AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0233570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0233570 MtrunA17_Chr2g0281341 99.615 520 2 0 64 583 1 520 0.0 1048
Msa0233570 MtrunA17_Chr5g0406351 56.167 527 203 5 74 583 19 534 0.0 599
Msa0233570 MtrunA17_Chr5g0406331 57.455 503 196 3 88 583 21 512 0.0 594
Msa0233570 MtrunA17_Chr3g0143701 54.111 523 223 7 64 582 1 510 0.0 565
Msa0233570 MtrunA17_Chr4g0038711 50.339 443 213 3 147 582 59 501 6.78e-163 474
Msa0233570 MtrunA17_Chr6g0458931 39.583 432 249 6 150 580 34 454 1.98e-101 315
Msa0233570 MtrunA17_Chr2g0331721 38.653 401 235 5 150 549 39 429 9.33e-98 305
Msa0233570 MtrunA17_Chr1g0198531 38.372 430 248 7 157 580 18 436 1.94e-91 288
Msa0233570 MtrunA17_Chr7g0230011 37.358 439 263 5 143 580 15 442 2.60e-91 288
Msa0233570 MtrunA17_Chr8g0376991 35.945 434 262 6 150 580 15 435 2.91e-91 288
Msa0233570 MtrunA17_Chr6g0459021 36.574 432 262 5 150 580 26 446 6.85e-91 287
Msa0233570 MtrunA17_Chr5g0422741 37.875 433 257 5 149 580 17 438 1.66e-90 286
Msa0233570 MtrunA17_Chr1g0198541 37.264 424 254 5 158 580 24 436 2.43e-90 285
Msa0233570 MtrunA17_Chr3g0122921 35.092 436 255 5 145 580 20 427 2.72e-87 277
Msa0233570 MtrunA17_Chr6g0458921 37.327 434 259 7 149 580 5 427 8.87e-87 276
Msa0233570 MtrunA17_Chr4g0057851 33.726 424 269 4 157 579 9 421 3.32e-86 274
Msa0233570 MtrunA17_Chr6g0459031 36.866 434 261 7 149 580 5 427 1.49e-85 273
Msa0233570 MtrunA17_Chr6g0459001 35.332 467 261 7 150 580 14 475 4.48e-82 265
Msa0233570 MtrunA17_Chr2g0328081 36.364 429 260 7 154 580 10 427 5.25e-79 255
Msa0233570 MtrunA17_Chr6g0459011 37.157 401 240 5 175 574 2 391 1.24e-78 253
Msa0233570 MtrunA17_Chr3g0077651 33.486 436 274 5 150 580 44 468 1.75e-71 237
Msa0233570 MtrunA17_Chr8g0387941 26.623 462 301 13 138 581 7 448 3.23e-33 132
Msa0233570 MtrunA17_Chr4g0027241 25.227 440 284 12 139 566 32 438 1.69e-25 109
Msa0233570 MtrunA17_Chr3g0125101 25.435 460 290 16 158 582 34 475 7.17e-23 102
Msa0233570 MtrunA17_Chr3g0125081 25.054 459 292 15 158 582 34 474 4.37e-22 99.8
Msa0233570 MtrunA17_Chr1g0184721 26.942 412 269 15 182 581 47 438 2.55e-21 97.1
Msa0233570 MtrunA17_Chr1g0198081 24.336 452 311 13 140 578 40 473 3.94e-21 96.7
Msa0233570 MtrunA17_Chr3g0130641 25.052 483 289 18 144 582 19 472 4.28e-21 96.7
Msa0233570 MtrunA17_Chr3g0125091 24.078 461 295 17 158 582 34 475 2.07e-20 94.7
Msa0233570 MtrunA17_Chr3g0140761 23.210 461 307 13 158 583 33 481 1.36e-19 92.0
Msa0233570 MtrunA17_Chr1g0146391 24.307 469 282 14 158 580 12 453 5.67e-19 90.1
Msa0233570 MtrunA17_Chr1g0146491 24.353 464 293 17 158 582 23 467 1.00e-18 89.4
Msa0233570 MtrunA17_Chr3g0103231 23.261 417 281 10 158 545 23 429 7.70e-18 86.7
Msa0233570 MtrunA17_Chr4g0058161 24.691 405 264 14 189 580 71 447 4.19e-17 84.3
Msa0233570 MtrunA17_Chr3g0103271 22.148 447 299 12 159 569 28 461 6.23e-17 83.6
Msa0233570 MtrunA17_Chr3g0140531 22.757 457 306 13 158 580 24 467 3.18e-16 81.6
Msa0233570 MtrunA17_Chr3g0140541 24.045 445 287 13 158 567 25 453 3.25e-16 81.6
Msa0233570 MtrunA17_Chr3g0130651 22.779 439 277 15 144 545 16 429 1.15e-15 79.7
Msa0233570 MtrunA17_Chr5g0447231 23.620 453 294 16 159 575 26 462 5.87e-15 77.4
Msa0233570 MtrunA17_Chr8g0384661 22.296 453 309 12 159 582 51 489 8.93e-15 77.0
Msa0233570 MtrunA17_Chr1g0159761 24.292 424 271 16 158 545 27 436 5.36e-14 74.7
Msa0233570 MtrunA17_Chr1g0146331 22.826 460 301 14 158 580 20 462 1.08e-13 73.6
Msa0233570 MtrunA17_Chr5g0447221 23.585 424 269 15 159 545 30 435 1.48e-13 73.2
Msa0233570 MtrunA17_Chr1g0146411 23.282 451 306 13 158 581 33 470 2.11e-13 72.8
Msa0233570 MtrunA17_Chr2g0293331 22.366 465 296 18 158 580 12 453 2.20e-13 72.8
Msa0233570 MtrunA17_Chr3g0103221 21.903 452 310 12 158 578 30 469 2.36e-13 72.4
Msa0233570 MtrunA17_Chr1g0206851 22.922 397 236 15 221 583 20 380 5.71e-12 67.8
Msa0233570 MtrunA17_Chr3g0103211 24.641 418 255 15 158 555 23 400 5.77e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0233570 AT1G47670.1 89.210 519 54 1 64 582 1 517 0.0 921
Msa0233570 AT4G35180.1 44.419 439 233 4 148 582 47 478 1.89e-128 385
Msa0233570 AT1G24400.1 37.529 437 261 5 145 580 15 440 7.54e-96 300
Msa0233570 AT5G40780.1 37.731 432 257 5 150 580 25 445 2.96e-95 298
Msa0233570 AT1G61270.1 38.588 425 249 6 150 572 25 439 7.96e-94 295
Msa0233570 AT1G48640.1 37.838 444 264 5 138 580 20 452 7.79e-93 293
Msa0233570 AT1G67640.1 36.986 438 264 5 144 580 14 440 4.77e-89 282
Msa0233570 AT3G01760.1 36.795 443 265 7 136 573 7 439 4.28e-88 280
Msa0233570 AT1G25530.1 37.273 440 260 6 144 580 13 439 4.48e-87 277
Msa0233570 AT4G35180.2 47.670 279 136 3 148 423 47 318 5.47e-87 273
Msa0233570 AT5G40780.3 36.609 407 246 5 175 580 2 397 3.71e-84 268
Msa0233570 AT5G40780.2 36.609 407 246 5 175 580 2 397 3.71e-84 268
Msa0233570 AT1G71680.1 33.481 451 282 7 134 580 11 447 6.55e-70 233
Msa0233570 AT1G71680.2 36.443 343 201 6 134 473 11 339 1.17e-62 211
Msa0233570 AT5G41800.1 25.333 450 309 12 143 580 12 446 1.14e-27 116
Msa0233570 AT1G08230.2 25.962 416 282 10 165 571 34 432 1.49e-25 110
Msa0233570 AT5G09220.1 24.691 486 305 18 139 582 22 488 1.35e-17 86.3
Msa0233570 AT1G08230.3 24.923 325 220 9 254 571 25 332 1.55e-16 82.0
Msa0233570 AT1G08230.4 25.231 325 219 10 254 571 6 313 2.04e-16 81.3
Msa0233570 AT1G08230.6 25.231 325 219 10 254 571 6 313 2.04e-16 81.3
Msa0233570 AT1G08230.5 25.231 325 219 10 254 571 6 313 2.04e-16 81.3
Msa0233570 AT1G10010.1 23.418 474 286 17 157 582 26 470 6.60e-16 80.9
Msa0233570 AT1G10010.2 23.418 474 286 17 157 582 27 471 7.18e-16 80.9
Msa0233570 AT1G58360.1 22.689 476 287 16 157 582 35 479 8.13e-16 80.9
Msa0233570 AT5G49630.1 24.066 482 309 19 138 582 16 477 8.22e-16 80.9
Msa0233570 AT5G63850.1 21.888 466 301 17 158 582 18 461 4.74e-14 75.1
Msa0233570 AT1G77380.1 23.585 424 275 16 157 545 28 437 8.04e-14 74.3
Msa0233570 AT2G36590.1 23.056 373 250 13 189 550 57 403 6.93e-11 65.1

Find 194 sgRNAs with CRISPR-Local

Find 465 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCATACTTAAAACTTAAT+TGG 0.067919 2_2:-5934632 None:intergenic
ACTTTACACCTTATGGATTT+TGG 0.133687 2_2:+5932643 Msa0233570:CDS
TATAAACATGAAGGGTTATT+TGG 0.161352 2_2:+5930781 Msa0233570:CDS
CTATGGCCATTGGAGGCTTT+TGG 0.191651 2_2:+5933639 Msa0233570:CDS
TGATAATAATTTGTGAAAAT+AGG 0.222667 2_2:-5934727 None:intergenic
CCATTCCGAGACTCAGTTAT+AGG 0.223334 2_2:-5930851 None:intergenic
CCATTCCTCTCAAGTCTTGC+TGG 0.240146 2_2:+5934406 Msa0233570:CDS
TCAAGTCTTGCTGGTTTGTT+AGG 0.242328 2_2:+5934415 Msa0233570:CDS
CAAACCGTCCTTGCTCAATA+TGG 0.245713 2_2:+5934323 Msa0233570:CDS
GTTGGCAACTTTACACCTTA+TGG 0.246435 2_2:+5932636 Msa0233570:CDS
CAAAACCTTTGGCCGTAATA+TGG 0.258454 2_2:-5928976 None:intergenic
CAATTTGGTCCTAGAAATTC+AGG 0.265863 2_2:+5933430 Msa0233570:CDS
TGGTATTTCAATTGGATTCT+TGG 0.269679 2_2:+5934520 Msa0233570:CDS
TACCACTCCACCGTTGTTAA+AGG 0.272449 2_2:-5933164 None:intergenic
TACTTACTCCACCATGGTTT+GGG 0.272577 2_2:+5933280 Msa0233570:CDS
TTCCTTTCAGTGGCCTATCT+TGG 0.295692 2_2:+5928928 Msa0233570:CDS
GTTGACACTCTTGGTGTTGC+TGG 0.296934 2_2:-5930617 None:intergenic
GAAATTTACTCTGTTAGTTT+TGG 0.300338 2_2:+5928897 Msa0233570:CDS
TTACTTACTCCACCATGGTT+TGG 0.321058 2_2:+5933279 Msa0233570:CDS
CCAAACCTCAATTCAATTGC+AGG 0.324520 2_2:+5933227 Msa0233570:CDS
TACTATATATAGATTGAGTT+TGG 0.332172 2_2:+5935361 Msa0233570:three_prime_UTR
CCGGTCTTGGAAGTTTGACT+TGG 0.332369 2_2:+5928872 Msa0233570:CDS
ATGAAGCAGTTCCAGGTAAA+AGG 0.340688 2_2:+5932675 Msa0233570:CDS
CATTGGAGGTATTTGGAGTA+TGG 0.343372 2_2:+5934576 Msa0233570:CDS
AATTGGATTCTTGGTTGGTT+AGG 0.350163 2_2:+5934529 Msa0233570:CDS
CTTGGTGACCTTTGTCCTGA+TGG 0.353129 2_2:-5930656 None:intergenic
ATCATACTTAAAACTTAATT+GGG 0.358041 2_2:-5934631 None:intergenic
CAAGGATATGCAAAAGTAAC+TGG 0.358509 2_2:-5934451 None:intergenic
ACCTGACCCCGCTTCGGAAT+CGG 0.359302 2_2:+5935141 Msa0233570:three_prime_UTR
TCATTGATACCTGAATTTCT+AGG 0.362599 2_2:-5933439 None:intergenic
TATTTGAAAGAACAGTTTCA+TGG 0.363355 2_2:-5933114 None:intergenic
GCTTCAGTTGGTATTTCAAT+TGG 0.364746 2_2:+5934512 Msa0233570:CDS
ATTGCAGGACTGTCACTAAT+AGG 0.370043 2_2:+5933242 Msa0233570:CDS
GGATTTGTCTCATTCTTCAT+AGG 0.373458 2_2:+5934373 Msa0233570:CDS
GCTTCCTTTGATCCTTGTCT+TGG 0.383396 2_2:-5930674 None:intergenic
CAGGGGAAAGATTAGGAGTA+TGG 0.387882 2_2:+5933021 Msa0233570:intron
CAGCTGCATGAAGCAGTTCC+AGG 0.392594 2_2:+5932668 Msa0233570:CDS
CCTGATGGTGTCAGTATCTC+TGG 0.393699 2_2:-5930641 None:intergenic
CTGTTCTTTCAAATAGTTTG+TGG 0.403350 2_2:+5933122 Msa0233570:CDS
TGGCCGTCCGATTCCGAAGC+GGG 0.404628 2_2:-5935148 Msa0233580:CDS
CCTGCAATTGAATTGAGGTT+TGG 0.408191 2_2:-5933227 None:intergenic
CCAAATGTTCTGCAGGAGTT+GGG 0.409982 2_2:+5932586 Msa0233570:intron
TGCAATGTGCTTATTCCCTA+TGG 0.414072 2_2:+5933622 Msa0233570:CDS
TGTTGGTTTCCCTCCAAGAT+AGG 0.417758 2_2:-5928941 None:intergenic
TGCATATCCTTGTTTCATGT+GGG 0.419315 2_2:+5934462 Msa0233570:CDS
AAGATAGTGACTTCCGGTCT+TGG 0.422629 2_2:+5928859 Msa0233570:CDS
TCCGATTCCGAAGCGGGGTC+AGG 0.425545 2_2:-5935142 Msa0233580:CDS
TTTGCTGCAGGGGAAAGATT+AGG 0.425658 2_2:+5933014 Msa0233570:intron
CCAACAGTATGCCACGGTTA+AGG 0.431522 2_2:-5932618 None:intergenic
CTTTCAGTGGCCTATCTTGG+AGG 0.435362 2_2:+5928931 Msa0233570:CDS
ATTTCAATTGGATTCTTGGT+TGG 0.436068 2_2:+5934524 Msa0233570:CDS
CCAAGATAAGCAAAAGCAAC+AGG 0.437347 2_2:-5930938 None:intergenic
TTCCACATTGGCACACGAGC+CGG 0.438598 2_2:-5933572 None:intergenic
CACCGTTGTTAAAGGATTTG+AGG 0.440502 2_2:-5933156 None:intergenic
TTGCATATCCTTGTTTCATG+TGG 0.441112 2_2:+5934461 Msa0233570:CDS
GAACTTTAGAAGCAAAATAC+TGG 0.441341 2_2:+5934911 Msa0233570:three_prime_UTR
TGCTTATTCCCTATGGCCAT+TGG 0.441666 2_2:+5933629 Msa0233570:CDS
CATAATCTCAATGCTGGTGT+TGG 0.445259 2_2:+5930896 Msa0233570:CDS
TGGAGCGAGATTTCGTTACT+TGG 0.445710 2_2:+5928538 Msa0233570:CDS
CTATAGGGACACCAATGAAA+AGG 0.450434 2_2:+5930753 Msa0233570:CDS
CCAACTGTTTATTTATCAGC+AGG 0.453151 2_2:+5933056 Msa0233570:CDS
TCCACATTGGCACACGAGCC+GGG 0.458379 2_2:-5933571 None:intergenic
ATTGATATCAGCTCTGTCTC+TGG 0.458540 2_2:-5930593 None:intergenic
TGCTCAATATGGGTTCGGTC+AGG 0.460267 2_2:+5934334 Msa0233570:CDS
AAGACCGGAAGTCACTATCT+TGG 0.464549 2_2:-5928857 None:intergenic
GTTAGGTGTTGCTTTCAGCT+TGG 0.466303 2_2:+5934546 Msa0233570:CDS
GTCACTAATAGGAGCTGTTA+CGG 0.468833 2_2:+5933253 Msa0233570:CDS
TACTAAACTGCCCCACGACT+TGG 0.472145 2_2:+5935408 Msa0233570:three_prime_UTR
GTGAAGCTTGGAATTGTGTT+GGG 0.472766 2_2:-5935120 Msa0233580:CDS
TTCACTTCTCAAACTCATAG+AGG 0.473464 2_2:-5934956 None:intergenic
GCAAGGACGGTTTGTTCGAC+TGG 0.473490 2_2:-5934314 None:intergenic
GTCCTTGCTCAATATGGGTT+CGG 0.473519 2_2:+5934329 Msa0233570:CDS
TTTCTAGCATTGAATGCACT+TGG 0.474920 2_2:+5933380 Msa0233570:CDS
GCTGTCAAAATCCCTCCATT+AGG 0.476540 2_2:-5934157 None:intergenic
ATCTCTGGTGTTGACACTCT+TGG 0.477161 2_2:-5930626 None:intergenic
AGCTTCACCTGACCCCGCTT+CGG 0.478402 2_2:+5935135 Msa0233570:three_prime_UTR
AGACCGGAAGTCACTATCTT+GGG 0.479602 2_2:-5928856 None:intergenic
TTATTCCCTATGGCCATTGG+AGG 0.481227 2_2:+5933632 Msa0233570:CDS
AGTCTTGCTGGTTTGTTAGG+AGG 0.481463 2_2:+5934418 Msa0233570:CDS
CGAGGATGAGATCCATATTA+CGG 0.481580 2_2:+5928964 Msa0233570:CDS
AAACCGTCCTTGCTCAATAT+GGG 0.484778 2_2:+5934324 Msa0233570:CDS
GCAACAGCTTTGATTCTCGT+TGG 0.487059 2_2:+5933083 Msa0233570:CDS
CAGCTTTGATTCTCGTTGGA+GGG 0.490595 2_2:+5933087 Msa0233570:CDS
TTAGATCAATGTCGTCTTGG+TGG 0.491192 2_2:+5928518 None:intergenic
GGCATATTCGTTCCTTTCAG+TGG 0.492523 2_2:+5928918 Msa0233570:CDS
CGGTCTTGGAAGTTTGACTT+GGG 0.494868 2_2:+5928873 Msa0233570:CDS
CCAAATACCTCCAATGGAAA+AGG 0.497847 2_2:-5934569 None:intergenic
CTGCTGATAAATAAACAGTT+GGG 0.498242 2_2:-5933055 None:intergenic
GTTCCCAAGATAGTGACTTC+CGG 0.498827 2_2:+5928853 Msa0233570:CDS
TAGGAAGCCATGCATCTTGA+GGG 0.499200 2_2:-5930832 None:intergenic
CCTGCTGATAAATAAACAGT+TGG 0.503649 2_2:-5933056 None:intergenic
AAGCGGGGTCAGGTGAAGCT+TGG 0.504424 2_2:-5935132 Msa0233580:CDS
AACAACGGTGGAGTGGTACC+TGG 0.505900 2_2:+5933169 Msa0233570:CDS
AAGGGTTATTTGGAAGATGT+TGG 0.506682 2_2:+5930791 Msa0233570:CDS
CACAGTCATGACATTTCAAG+AGG 0.509078 2_2:+5934193 Msa0233570:CDS
CCAGAGATACTGACACCATC+AGG 0.509945 2_2:+5930641 Msa0233570:CDS
CAAAACAAAGAGAAGATGAA+TGG 0.513465 2_2:-5935225 Msa0233580:CDS
GAGCTAGCACAAGCAGCATT+CGG 0.516115 2_2:+5932713 Msa0233570:CDS
GTTTGTTCGACTGGTGTAGC+CGG 0.517936 2_2:-5934305 None:intergenic
CAAAAGCCTCCAATGGCCAT+AGG 0.518071 2_2:-5933638 None:intergenic
CATGTGTTGGTGTTGGACAC+TGG 0.520528 2_2:-5934687 None:intergenic
ACAGCTTTGATTCTCGTTGG+AGG 0.520949 2_2:+5933086 Msa0233570:CDS
CGTGGGGCAGTTTAGTAACA+TGG 0.520963 2_2:-5935402 Msa0233580:intron
AGCTTTGATTCTCGTTGGAG+GGG 0.521908 2_2:+5933088 Msa0233570:CDS
CTCTTATGAACCCTTATCGC+TGG 0.523938 2_2:+5933337 Msa0233570:CDS
GCTAGAAATAATGAAGAAGA+AGG 0.525988 2_2:-5933365 None:intergenic
AAGGGTACTTATAAACATGA+AGG 0.529171 2_2:+5930772 Msa0233570:CDS
TAAGGGTTCATAAGAGATAG+AGG 0.529501 2_2:-5933330 None:intergenic
GCTTCAAAACTGTCGAAAGC+AGG 0.530785 2_2:-5934283 None:intergenic
TATAGGGACACCAATGAAAA+GGG 0.530966 2_2:+5930754 Msa0233570:CDS
CAGCTGAACCAAAATCCATA+AGG 0.533298 2_2:-5932651 None:intergenic
AATAAAGAAATAAGCAACCT+TGG 0.534081 2_2:-5933600 None:intergenic
CCTTAACCGTGGCATACTGT+TGG 0.535416 2_2:+5932618 Msa0233570:CDS
AAAGGATTTGAGGTACATGT+TGG 0.535417 2_2:-5933146 None:intergenic
AAGCTAAATCATCAAATGCA+TGG 0.537484 2_2:+5930693 Msa0233570:CDS
ATAGGAAGCCATGCATCTTG+AGG 0.543503 2_2:-5930833 None:intergenic
GCCGGGTGCTTAAACGTTGA+CGG 0.544247 2_2:-5933554 None:intergenic
GCTATAATTGACCAAGTCGT+GGG 0.545185 2_2:-5935419 Msa0233580:intron
TGTCTCATTCTTCATAGGAG+TGG 0.547795 2_2:+5934378 Msa0233570:CDS
GGTGAAGCTTGGAATTGTGT+TGG 0.548778 2_2:-5935121 Msa0233580:CDS
GGAGCGAGATTTCGTTACTT+GGG 0.550040 2_2:+5928539 Msa0233570:CDS
CCAAGTCAAACTTCCAAGAC+CGG 0.551049 2_2:-5928872 None:intergenic
CCAGCAAGACTTGAGAGGAA+TGG 0.553384 2_2:-5934406 None:intergenic
CATACTCCAAATACCTCCAA+TGG 0.554754 2_2:-5934575 None:intergenic
ACCTTGGCTCCTTTCCACAT+TGG 0.554906 2_2:-5933584 None:intergenic
TTTCAGTGGCCTATCTTGGA+GGG 0.555323 2_2:+5928932 Msa0233570:CDS
TATGGATCTCATCCTCGTGT+TGG 0.557909 2_2:-5928958 None:intergenic
AAAAGCCTCCAATGGCCATA+GGG 0.559594 2_2:-5933637 None:intergenic
CAAATGTTCTGCAGGAGTTG+GGG 0.559671 2_2:+5932587 Msa0233570:intron
TGAAACAGATGCCTAATGGA+GGG 0.564181 2_2:+5934146 Msa0233570:intron
ACAGTCCTGCAATTGAATTG+AGG 0.566649 2_2:-5933232 None:intergenic
TGCATCTTGAGGGTTAAGCT+TGG 0.568084 2_2:-5930822 None:intergenic
TGCTATAATTGACCAAGTCG+TGG 0.568291 2_2:-5935420 Msa0233580:intron
TGAAAATCAATGGTGGAGGA+AGG 0.569078 2_2:-5935179 Msa0233580:CDS
CAACAAAATATAGCTTCAGT+TGG 0.569968 2_2:+5934500 Msa0233570:CDS
CCTATAACTGAGTCTCGGAA+TGG 0.574063 2_2:+5930851 Msa0233570:CDS
GGCTTCCTATAACTGAGTCT+CGG 0.575832 2_2:+5930846 Msa0233570:CDS
TAAAAGGTACAACAGATATG+TGG 0.576006 2_2:+5932691 Msa0233570:CDS
AACAGCTGAACACTACAAGA+AGG 0.580965 2_2:-5934234 None:intergenic
ATCCTGAAAATCAATGGTGG+AGG 0.581002 2_2:-5935183 Msa0233580:CDS
GTCACCAAGACAAGGATCAA+AGG 0.582418 2_2:+5930670 Msa0233570:CDS
GCTCGTGTGCCAATGTGGAA+AGG 0.586353 2_2:+5933575 Msa0233570:CDS
AGTCTAATCAAATTTCCTTG+AGG 0.586548 2_2:-5934989 None:intergenic
AGATAGAGGATGGCCTCTGT+TGG 0.586725 2_2:-5933316 None:intergenic
GGGAATTATTTCCTTAACCG+TGG 0.591369 2_2:+5932607 Msa0233570:CDS
CTTAAACGTTGACGGCATTG+TGG 0.591396 2_2:-5933546 None:intergenic
TACCTCAAATCCTTTAACAA+CGG 0.593017 2_2:+5933154 Msa0233570:CDS
GCCGTCAACGTTTAAGCACC+CGG 0.594315 2_2:+5933553 Msa0233570:CDS
CTCCAAGATAGGCCACTGAA+AGG 0.594692 2_2:-5928930 None:intergenic
AGCTTAACCCTCAAGATGCA+TGG 0.597758 2_2:+5930825 Msa0233570:CDS
CTTGGTGATATAAAAGATGT+TGG 0.598132 2_2:-5930719 None:intergenic
TGCTCTCTGTGAGCCAACAG+AGG 0.598618 2_2:+5933303 Msa0233570:CDS
CACTACAAGAAGGAATGCTA+AGG 0.599756 2_2:-5934224 None:intergenic
GAGATCCATATTACGGCCAA+AGG 0.600184 2_2:+5928971 Msa0233570:CDS
GCTTAATGTGTGAGATGAGA+AGG 0.601037 2_2:+5935051 Msa0233570:three_prime_UTR
GCTGCAATCCTGAAAATCAA+TGG 0.601831 2_2:-5935189 Msa0233580:CDS
GTGAAAGATAAAATTCCTCA+AGG 0.604480 2_2:+5934974 Msa0233570:three_prime_UTR
GTAACCACATGTGTTGGTGT+TGG 0.608050 2_2:-5934694 None:intergenic
GGCCGTCCGATTCCGAAGCG+GGG 0.609322 2_2:-5935147 Msa0233580:CDS
CTCAAATCCTTTAACAACGG+TGG 0.611417 2_2:+5933157 Msa0233570:CDS
ATCCTTTAACAACGGTGGAG+TGG 0.612729 2_2:+5933162 Msa0233570:CDS
AACCATGGTGGAGTAAGTAA+TGG 0.613563 2_2:-5933276 None:intergenic
TTGAAACAGATGCCTAATGG+AGG 0.614131 2_2:+5934145 Msa0233570:intron
ACAAACCAGCAAGACTTGAG+AGG 0.615997 2_2:-5934411 None:intergenic
GTAGGCCCAAAAGCCTCCAA+TGG 0.617051 2_2:-5933645 None:intergenic
TTTACTTACTTGGTTCCCGT+AGG 0.618030 2_2:-5933663 None:intergenic
GGTTCATAAGAGATAGAGGA+TGG 0.619677 2_2:-5933326 None:intergenic
ATAAGAACCCACATGAAACA+AGG 0.620606 2_2:-5934469 None:intergenic
GAAGATGCAAACAACTGAGT+TGG 0.620854 2_2:+5935092 Msa0233570:three_prime_UTR
ACCCGGCTCGTGTGCCAATG+TGG 0.622723 2_2:+5933570 Msa0233570:CDS
GGCCATTACTTACTCCACCA+TGG 0.627805 2_2:+5933274 Msa0233570:CDS
CACAGAGAGCACCCAAACCA+TGG 0.629148 2_2:-5933291 None:intergenic
AGGGTACTTATAAACATGAA+GGG 0.632324 2_2:+5930773 Msa0233570:CDS
GACCGAACCCATATTGAGCA+AGG 0.634891 2_2:-5934331 None:intergenic
TTTCTGTTCAACAAGAGCAG+AGG 0.638339 2_2:-5935261 Msa0233580:intron
GCAATCCTGAAAATCAATGG+TGG 0.643367 2_2:-5935186 Msa0233580:CDS
TACTGACACCATCAGGACAA+AGG 0.644095 2_2:+5930648 Msa0233570:CDS
GGACAAAGGTCACCAAGACA+AGG 0.644542 2_2:+5930662 Msa0233570:CDS
CTATAATTGACCAAGTCGTG+GGG 0.648977 2_2:-5935418 Msa0233580:intron
TAGATAGAGAAGTGAAAACC+AGG 0.650870 2_2:-5933187 None:intergenic
GCCAATGTGGAAAGGAGCCA+AGG 0.651565 2_2:+5933583 Msa0233570:CDS
GTGGCCGTCCGATTCCGAAG+CGG 0.652522 2_2:-5935149 Msa0233580:CDS
GAACCCATATTGAGCAAGGA+CGG 0.653502 2_2:-5934327 None:intergenic
TGTCATGCAAATGTACATGA+TGG 0.655329 2_2:+5934785 Msa0233570:three_prime_UTR
GTGTCCAACACCAACACATG+TGG 0.665308 2_2:+5934690 Msa0233570:three_prime_UTR
AGAAGGTGCAGCACATGATG+TGG 0.666849 2_2:+5935068 Msa0233570:three_prime_UTR
GACCCCGCTTCGGAATCGGA+CGG 0.670096 2_2:+5935145 Msa0233570:three_prime_UTR
ATTTGGAGTATGGTCAACGA+TGG 0.678414 2_2:+5934586 Msa0233570:CDS
TTGAATGTAACCACATGTGT+TGG 0.680577 2_2:-5934700 None:intergenic
AAGTTGCCAACAGTATGCCA+CGG 0.685540 2_2:-5932624 None:intergenic
GGTGGAGGAAGGATCATCTG+TGG 0.691421 2_2:-5935168 Msa0233580:CDS
AGAGAGCACCCAAACCATGG+TGG 0.713013 2_2:-5933288 None:intergenic
CTTGGAGGGAAACCAACACG+AGG 0.730983 2_2:+5928946 Msa0233570:CDS
TATGTACAGATACTAACACG+TGG 0.745954 2_2:-5934754 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTAAACAAATTTAATTTAA+TGG - chr2_2:5929428-5929447 None:intergenic 10.0%
!! TTAAACAATAAAAAGAAATT+TGG - chr2_2:5929533-5929552 None:intergenic 10.0%
!! CATTAAAAAATTAAGTAGTA+AGG - chr2_2:5928626-5928645 None:intergenic 15.0%
!!! TTAATTTTTTAATGATCCTT+GGG + chr2_2:5928632-5928651 Msa0233570:intron 15.0%
!! CTCAAATAAAAAATATTTCA+TGG + chr2_2:5928701-5928720 Msa0233570:intron 15.0%
!!! TAAATTAAATTTGTTTAGTG+TGG + chr2_2:5929429-5929448 Msa0233570:intron 15.0%
!!! AAATTAAATTTGTTTAGTGT+GGG + chr2_2:5929430-5929449 Msa0233570:intron 15.0%
!! TAAATCAAAATCATTATCAA+TGG + chr2_2:5929641-5929660 Msa0233570:intron 15.0%
!! ATAAATCTTCAAAATTGTTT+AGG - chr2_2:5929701-5929720 None:intergenic 15.0%
!!! AAGATGTTTTGAATTATTAA+TGG - chr2_2:5930186-5930205 None:intergenic 15.0%
!!! TTTGTTTGTTGAAAATATTA+AGG - chr2_2:5930221-5930240 None:intergenic 15.0%
!!! ATTGATGTGTTTTTAATTTA+TGG + chr2_2:5931009-5931028 Msa0233570:intron 15.0%
!! GGTTAAGAAATTAAAATAAA+TGG - chr2_2:5931260-5931279 None:intergenic 15.0%
!! TATATAATTGTTCATGTTAT+AGG - chr2_2:5931290-5931309 None:intergenic 15.0%
!! AATATCAAAAAGAGAAAATA+TGG - chr2_2:5931783-5931802 None:intergenic 15.0%
!!! ATATTTTCTCTTTTTGATAT+TGG + chr2_2:5931782-5931801 Msa0233570:intron 15.0%
!! TGGATGAAATTTAATAAATA+AGG + chr2_2:5931984-5932003 Msa0233570:intron 15.0%
!! GGATGAAATTTAATAAATAA+GGG + chr2_2:5931985-5932004 Msa0233570:intron 15.0%
!!! TTTAATAAATAAGGGTATAA+TGG + chr2_2:5931993-5932012 Msa0233570:intron 15.0%
!!! TAAAGAGATTTTGAATTATA+AGG - chr2_2:5933491-5933510 None:intergenic 15.0%
!!! ATAAAGATGAAAATTTGTTT+TGG + chr2_2:5933737-5933756 Msa0233570:intron 15.0%
!! ATCATACTTAAAACTTAATT+GGG - chr2_2:5934634-5934653 None:intergenic 15.0%
!!! TGATAATAATTTGTGAAAAT+AGG - chr2_2:5934730-5934749 None:intergenic 15.0%
!!! CTTAATTTTTTAATGATCCT+TGG + chr2_2:5928631-5928650 Msa0233570:intron 20.0%
!! TGAATCAAATTCAACATATT+AGG + chr2_2:5929382-5929401 Msa0233570:intron 20.0%
!! TAAAACAAAGATGAAGAAAA+AGG - chr2_2:5929476-5929495 None:intergenic 20.0%
!!! TCCAAAGAATATTAAGATTT+TGG + chr2_2:5929582-5929601 Msa0233570:intron 20.0%
!! TCCAAAATCTTAATATTCTT+TGG - chr2_2:5929586-5929605 None:intergenic 20.0%
!!! TAAAAAATATTGATTGGGTT+GGG - chr2_2:5929668-5929687 None:intergenic 20.0%
!!! ATAAAAAATATTGATTGGGT+TGG - chr2_2:5929669-5929688 None:intergenic 20.0%
!!! ACCCAATCAATATTTTTTAT+AGG + chr2_2:5929669-5929688 Msa0233570:intron 20.0%
!!! GCCTATAAAAAATATTGATT+GGG - chr2_2:5929673-5929692 None:intergenic 20.0%
!! TGCCTATAAAAAATATTGAT+TGG - chr2_2:5929674-5929693 None:intergenic 20.0%
!! ATTAATGGTGTATTTAACAT+TGG - chr2_2:5930171-5930190 None:intergenic 20.0%
!!! TTATAGTTTTTGCAAAATCA+CGG + chr2_2:5930464-5930483 Msa0233570:intron 20.0%
!!! TTGATTATATTTTTTGGATC+AGG + chr2_2:5930547-5930566 Msa0233570:intron 20.0%
!! TTTATTTGACATAAAAGGAA+GGG + chr2_2:5931614-5931633 Msa0233570:intron 20.0%
!!! ATTAATTGTGTTGATTTCAA+TGG + chr2_2:5931905-5931924 Msa0233570:intron 20.0%
!! TCCACTAACATAATTAATAA+GGG - chr2_2:5931957-5931976 None:intergenic 20.0%
!! TTCCACTAACATAATTAATA+AGG - chr2_2:5931958-5931977 None:intergenic 20.0%
!!! AATAAGTTGAAAACAAGTTA+TGG - chr2_2:5932272-5932291 None:intergenic 20.0%
!! ATATAAAACTGTTTCCTATA+TGG + chr2_2:5932845-5932864 Msa0233570:intron 20.0%
!!! ATTATAGCATTTTCTTTTAG+AGG + chr2_2:5933404-5933423 Msa0233570:CDS 20.0%
!! AAACATTTGTAAGACTATTT+CGG - chr2_2:5933961-5933980 None:intergenic 20.0%
!! GTTAACAATATGAATATGAA+GGG - chr2_2:5934018-5934037 None:intergenic 20.0%
!! TGTTAACAATATGAATATGA+AGG - chr2_2:5934019-5934038 None:intergenic 20.0%
!! CATCATACTTAAAACTTAAT+TGG - chr2_2:5934635-5934654 None:intergenic 20.0%
!! GCTATAACACTAAAAAAATA+AGG - chr2_2:5934844-5934863 None:intergenic 20.0%
!!! ATTTTTTTAGTGTTATAGCT+AGG + chr2_2:5934845-5934864 Msa0233570:three_prime_UTR 20.0%
!! TACTATATATAGATTGAGTT+TGG + chr2_2:5935361-5935380 Msa0233570:three_prime_UTR 20.0%
!!! AGTTTGGATATTTTTTACAT+TGG + chr2_2:5935377-5935396 Msa0233570:three_prime_UTR 20.0%
!!! TTGCTTTGGGATTTTTTTAT+CGG + chr2_2:5928764-5928783 Msa0233570:intron 25.0%
!!! GAAATTTACTCTGTTAGTTT+TGG + chr2_2:5928897-5928916 Msa0233570:CDS 25.0%
! TTCATCTAAATAGGTTATGA+CGG - chr2_2:5929067-5929086 None:intergenic 25.0%
! AAATGATCCTTCATCTAAAT+AGG - chr2_2:5929076-5929095 None:intergenic 25.0%
!!! ACACAAGTTATGTCTTATTT+GGG + chr2_2:5929107-5929126 Msa0233570:intron 25.0%
! GAGATCCAAAAATAAGAAAA+AGG - chr2_2:5929189-5929208 None:intergenic 25.0%
!!! TTTCTTATTTTTGGATCTCT+AGG + chr2_2:5929190-5929209 Msa0233570:intron 25.0%
!! AAAGATGAAGAAAAAGGTAT+GGG - chr2_2:5929470-5929489 None:intergenic 25.0%
! TAATTTGAGAGATGATTGTT+GGG - chr2_2:5929798-5929817 None:intergenic 25.0%
! ATGTATGATATATTGAATGG+TGG - chr2_2:5929838-5929857 None:intergenic 25.0%
! ACCATTCAATATATCATACA+TGG + chr2_2:5929837-5929856 Msa0233570:intron 25.0%
! CAAAGTCATACATATCATTA+TGG + chr2_2:5930069-5930088 Msa0233570:intron 25.0%
!! GGGTATATAAAATGATTTGT+GGG - chr2_2:5930104-5930123 None:intergenic 25.0%
! TGGGTATATAAAATGATTTG+TGG - chr2_2:5930105-5930124 None:intergenic 25.0%
! ATATAGCAAGCAAAGTAATA+AGG - chr2_2:5930329-5930348 None:intergenic 25.0%
!! TTTATAAGTACCCTTTTCAT+TGG - chr2_2:5930767-5930786 None:intergenic 25.0%
! TATAAACATGAAGGGTTATT+TGG + chr2_2:5930781-5930800 Msa0233570:CDS 25.0%
! ACACATCAATTATTGTAGAA+GGG - chr2_2:5930999-5931018 None:intergenic 25.0%
! AACACATCAATTATTGTAGA+AGG - chr2_2:5931000-5931019 None:intergenic 25.0%
! GCTATAAGTGGTTAATTATT+TGG + chr2_2:5931194-5931213 Msa0233570:intron 25.0%
!! ATGTCTCTTTATTTCATTTC+TGG + chr2_2:5931532-5931551 Msa0233570:intron 25.0%
!! TGTCCTTTATTTGACATAAA+AGG + chr2_2:5931609-5931628 Msa0233570:intron 25.0%
!! CTTCCTTTTATGTCAAATAA+AGG - chr2_2:5931615-5931634 None:intergenic 25.0%
!! CTTTATTTGACATAAAAGGA+AGG + chr2_2:5931613-5931632 Msa0233570:intron 25.0%
!! TTTGAAACTCAAAAGATGAA+GGG - chr2_2:5931716-5931735 None:intergenic 25.0%
!!! TTTTGAAACTCAAAAGATGA+AGG - chr2_2:5931717-5931736 None:intergenic 25.0%
! TAAAAAAGTTGCTTAAAGCA+AGG - chr2_2:5931753-5931772 None:intergenic 25.0%
! ACCCTTATTAATTATGTTAG+TGG + chr2_2:5931953-5931972 Msa0233570:intron 25.0%
! TTATGTTAGTGGAATTAAGT+TGG + chr2_2:5931964-5931983 Msa0233570:intron 25.0%
!! AATAAATAAGGGTATAATGG+TGG + chr2_2:5931996-5932015 Msa0233570:intron 25.0%
! ACTATTCTAATCAGTTCAAT+TGG - chr2_2:5932502-5932521 None:intergenic 25.0%
! TATTTGAAAGAACAGTTTCA+TGG - chr2_2:5933117-5933136 None:intergenic 25.0%
! AATAAAGAAATAAGCAACCT+TGG - chr2_2:5933603-5933622 None:intergenic 25.0%
! CAGTATTCAATTTACTTACT+TGG - chr2_2:5933676-5933695 None:intergenic 25.0%
! AAGTAAATTGAATACTGTAC+TGG + chr2_2:5933679-5933698 Msa0233570:intron 25.0%
! AACTTATGAAAACAGCTAAT+AGG - chr2_2:5933905-5933924 None:intergenic 25.0%
!!! TTAGCTGTTTTCATAAGTTA+TGG + chr2_2:5933906-5933925 Msa0233570:intron 25.0%
! ATAAGTTATGGACATGTTAT+AGG + chr2_2:5933918-5933937 Msa0233570:intron 25.0%
AATTCATAGAGGAGTAGATA+GGG + chr2_2:5928587-5928606 Msa0233570:intron 30.0%
TTAAGTAGTAAGGCTATTAC+AGG - chr2_2:5928616-5928635 None:intergenic 30.0%
GGTTTATGTTGTTCCTTTAA+GGG + chr2_2:5928653-5928672 Msa0233570:intron 30.0%
! TGACAGGTTTGAAATTCTTA+TGG + chr2_2:5928808-5928827 Msa0233570:intron 30.0%
GTAAGAATCTTATCTAGAAG+CGG - chr2_2:5929044-5929063 None:intergenic 30.0%
TCATCTAAATAGGTTATGAC+GGG - chr2_2:5929066-5929085 None:intergenic 30.0%
GTCATAACCTATTTAGATGA+AGG + chr2_2:5929066-5929085 Msa0233570:intron 30.0%
! AAGACATAACTTGTGTCATT+GGG - chr2_2:5929103-5929122 None:intergenic 30.0%
! TAAGACATAACTTGTGTCAT+TGG - chr2_2:5929104-5929123 None:intergenic 30.0%
! GACACAAGTTATGTCTTATT+TGG + chr2_2:5929106-5929125 Msa0233570:intron 30.0%
!!! GTGGTCCTTTTTCTTATTTT+TGG + chr2_2:5929181-5929200 Msa0233570:intron 30.0%
TATATGTTGTGTGGTTCATT+TGG + chr2_2:5929254-5929273 Msa0233570:intron 30.0%
AATTTGATCTTCTATGTCAG+CGG - chr2_2:5929328-5929347 None:intergenic 30.0%
AACTTACACACAAATTGAAC+GGG - chr2_2:5929354-5929373 None:intergenic 30.0%
GAACTTACACACAAATTGAA+CGG - chr2_2:5929355-5929374 None:intergenic 30.0%
CAAAGATGAAGAAAAAGGTA+TGG - chr2_2:5929471-5929490 None:intergenic 30.0%
GAAGATAGAAAACATTTGTG+AGG + chr2_2:5929604-5929623 Msa0233570:intron 30.0%
GATGATACATCAAAATGGAA+TGG - chr2_2:5929736-5929755 None:intergenic 30.0%
CTTGTGATGATACATCAAAA+TGG - chr2_2:5929741-5929760 None:intergenic 30.0%
AATTTGAGAGATGATTGTTG+GGG - chr2_2:5929797-5929816 None:intergenic 30.0%
GTAATTTGAGAGATGATTGT+TGG - chr2_2:5929799-5929818 None:intergenic 30.0%
GCCATGTATGATATATTGAA+TGG - chr2_2:5929841-5929860 None:intergenic 30.0%
! TTTGATTACTTTCTTTGAGG+TGG - chr2_2:5930053-5930072 None:intergenic 30.0%
GACTTTGATTACTTTCTTTG+AGG - chr2_2:5930056-5930075 None:intergenic 30.0%
GTGTATTTAACATTGGAACT+AGG - chr2_2:5930164-5930183 None:intergenic 30.0%
!! ACTTTGCTTGCTATATTTCA+AGG + chr2_2:5930333-5930352 Msa0233570:intron 30.0%
!!! TGTTTTAATTAGTGCATGTC+TGG + chr2_2:5930401-5930420 Msa0233570:intron 30.0%
CATTAACGAAACTAAATGCA+TGG - chr2_2:5930515-5930534 None:intergenic 30.0%
AAGCTAAATCATCAAATGCA+TGG + chr2_2:5930693-5930712 Msa0233570:CDS 30.0%
! CTTGGTGATATAAAAGATGT+TGG - chr2_2:5930722-5930741 None:intergenic 30.0%
! CAACATCTTTTATATCACCA+AGG + chr2_2:5930720-5930739 Msa0233570:CDS 30.0%
!! AAGGGTACTTATAAACATGA+AGG + chr2_2:5930772-5930791 Msa0233570:CDS 30.0%
! AGGGTACTTATAAACATGAA+GGG + chr2_2:5930773-5930792 Msa0233570:CDS 30.0%
! ACTTTTCATAATCTCAATGC+TGG + chr2_2:5930890-5930909 Msa0233570:CDS 30.0%
AAACTATCGTGTATAGCTTA+CGG - chr2_2:5931077-5931096 None:intergenic 30.0%
ATAAGCACTTATGCTATAAG+TGG + chr2_2:5931182-5931201 Msa0233570:intron 30.0%
!!! TTTTGACTTTCAAGTCTTGA+AGG + chr2_2:5931225-5931244 Msa0233570:intron 30.0%
! TTTGACTTTCAAGTCTTGAA+GGG + chr2_2:5931226-5931245 Msa0233570:intron 30.0%
GTTCATGTTATAGGTATGAT+TGG - chr2_2:5931281-5931300 None:intergenic 30.0%
! TATCTTGTGTTTTCCATTAG+TGG + chr2_2:5931440-5931459 Msa0233570:intron 30.0%
! TCTCTTTTTGATATTGGCAA+AGG + chr2_2:5931788-5931807 Msa0233570:intron 30.0%
! CTCTTTTTGATATTGGCAAA+GGG + chr2_2:5931789-5931808 Msa0233570:intron 30.0%
! TCTTTTTGATATTGGCAAAG+GGG + chr2_2:5931790-5931809 Msa0233570:intron 30.0%
TAAGGTTTGTGCGATTATTA+AGG + chr2_2:5931878-5931897 Msa0233570:intron 30.0%
AGACAATAATTATGAGACAG+AGG + chr2_2:5932084-5932103 Msa0233570:intron 30.0%
GACAATAATTATGAGACAGA+GGG + chr2_2:5932085-5932104 Msa0233570:intron 30.0%
!! CATAATTTCTAGTACTGTTC+TGG + chr2_2:5932121-5932140 Msa0233570:intron 30.0%
! CTTTTTGTGCAAGTTCTTTT+TGG + chr2_2:5932149-5932168 Msa0233570:intron 30.0%
TTATGGAAATAACCTATGAC+AGG + chr2_2:5932245-5932264 Msa0233570:intron 30.0%
TCATATAAGTGCTTGTGTAT+AGG - chr2_2:5932381-5932400 None:intergenic 30.0%
! ACATCTAGAAATAGAAGCAT+AGG - chr2_2:5932453-5932472 None:intergenic 30.0%
TGAAAAACAGTTCAATCTCA+TGG + chr2_2:5932542-5932561 Msa0233570:intron 30.0%
! ACTTTACACCTTATGGATTT+TGG + chr2_2:5932643-5932662 Msa0233570:CDS 30.0%
! TAAAAGGTACAACAGATATG+TGG + chr2_2:5932691-5932710 Msa0233570:CDS 30.0%
! ATATTTTGTACTTTTGCTGC+AGG + chr2_2:5933002-5933021 Msa0233570:intron 30.0%
! TATTTTGTACTTTTGCTGCA+GGG + chr2_2:5933003-5933022 Msa0233570:intron 30.0%
CTGCTGATAAATAAACAGTT+GGG - chr2_2:5933058-5933077 None:intergenic 30.0%
CTGTTCTTTCAAATAGTTTG+TGG + chr2_2:5933122-5933141 Msa0233570:CDS 30.0%
TACCTCAAATCCTTTAACAA+CGG + chr2_2:5933154-5933173 Msa0233570:CDS 30.0%
GCTAGAAATAATGAAGAAGA+AGG - chr2_2:5933368-5933387 None:intergenic 30.0%
!! TTCTTTTAGAGGTCACAATT+TGG + chr2_2:5933415-5933434 Msa0233570:CDS 30.0%
TCATTGATACCTGAATTTCT+AGG - chr2_2:5933442-5933461 None:intergenic 30.0%
ATAAAGCTGTTTATCCAAAC+AGG - chr2_2:5933786-5933805 None:intergenic 30.0%
CTTACAAATGTTTATGTGAG+CGG + chr2_2:5933968-5933987 Msa0233570:intron 30.0%
!!! ATTTTGAAACAGATGCCTAA+TGG + chr2_2:5934142-5934161 Msa0233570:intron 30.0%
!!! TCAGGTTTTAGAGTTTTCTT+TGG + chr2_2:5934352-5934371 Msa0233570:CDS 30.0%
! CAACTGAAGCTATATTTTGT+TGG - chr2_2:5934502-5934521 None:intergenic 30.0%
CAACAAAATATAGCTTCAGT+TGG + chr2_2:5934500-5934519 Msa0233570:CDS 30.0%
TGGTATTTCAATTGGATTCT+TGG + chr2_2:5934520-5934539 Msa0233570:CDS 30.0%
ATTTCAATTGGATTCTTGGT+TGG + chr2_2:5934524-5934543 Msa0233570:CDS 30.0%
! GAACTTTAGAAGCAAAATAC+TGG + chr2_2:5934911-5934930 Msa0233570:three_prime_UTR 30.0%
GTGAAAGATAAAATTCCTCA+AGG + chr2_2:5934974-5934993 Msa0233570:three_prime_UTR 30.0%
AGTCTAATCAAATTTCCTTG+AGG - chr2_2:5934992-5935011 None:intergenic 30.0%
CAAAACAAAGAGAAGATGAA+TGG - chr2_2:5935228-5935247 Msa0233580:CDS 30.0%
GATTTCGTTACTTGGGTATA+TGG + chr2_2:5928546-5928565 Msa0233570:intron 35.0%
CTATCTACTCCTCTATGAAT+TGG - chr2_2:5928588-5928607 None:intergenic 35.0%
CAATTCATAGAGGAGTAGAT+AGG + chr2_2:5928586-5928605 Msa0233570:intron 35.0%
AAAGGAACAACATAAACCCA+AGG - chr2_2:5928651-5928670 None:intergenic 35.0%
GGGTTTATGTTGTTCCTTTA+AGG + chr2_2:5928652-5928671 Msa0233570:intron 35.0%
TATCGAAAGCTTTCCCTTAA+AGG - chr2_2:5928669-5928688 None:intergenic 35.0%
! CAGGTTTGAAATTCTTATGG+TGG + chr2_2:5928811-5928830 Msa0233570:intron 35.0%
! ATTTGGGAAGTGAGTTGAAT+CGG + chr2_2:5929123-5929142 Msa0233570:intron 35.0%
! CACTTGCACTTTTACTTATG+TGG + chr2_2:5929162-5929181 Msa0233570:intron 35.0%
TACCTTCTCCAGAAAAACAA+TGG + chr2_2:5929294-5929313 Msa0233570:intron 35.0%
!! TTGAACCTCCATTGTTTTTC+TGG - chr2_2:5929305-5929324 None:intergenic 35.0%
ACTTACACACAAATTGAACG+GGG - chr2_2:5929353-5929372 None:intergenic 35.0%
! AATTTGTTTAGTGTGGGTTG+TGG + chr2_2:5929436-5929455 Msa0233570:intron 35.0%
TTCATGCATTGCATTCCTTT+CGG + chr2_2:5929895-5929914 Msa0233570:intron 35.0%
ATTGGAACTAGGTACTAATG+CGG - chr2_2:5930153-5930172 None:intergenic 35.0%
TAAGAAGAAGATGTGAGCTA+AGG - chr2_2:5930261-5930280 None:intergenic 35.0%
GTAATAAGGTTGGAATGAGA+AGG - chr2_2:5930315-5930334 None:intergenic 35.0%
AGCAAGCAAAGTAATAAGGT+TGG - chr2_2:5930325-5930344 None:intergenic 35.0%
GTAGTGTTACAAAATCACGA+TGG - chr2_2:5930439-5930458 None:intergenic 35.0%
!!! CAAGGTTTTTGAGTCCTATA+GGG + chr2_2:5930738-5930757 Msa0233570:CDS 35.0%
TATAGGGACACCAATGAAAA+GGG + chr2_2:5930754-5930773 Msa0233570:CDS 35.0%
AAGGGTTATTTGGAAGATGT+TGG + chr2_2:5930791-5930810 Msa0233570:CDS 35.0%
!!! AAGGAAGGGATTTTGAAATG+CGG + chr2_2:5931628-5931647 Msa0233570:intron 35.0%
GTGGAAAAAAAATGCTGCAT+TGG + chr2_2:5932015-5932034 Msa0233570:intron 35.0%
!! CTTATTTTCATCAACTCTCG+AGG + chr2_2:5932286-5932305 Msa0233570:intron 35.0%
TTGAGTAGTTTACCCAAACA+AGG + chr2_2:5932427-5932446 Msa0233570:intron 35.0%
! TATCTGTTGTACCTTTTACC+TGG - chr2_2:5932689-5932708 None:intergenic 35.0%
! GCAGTTTTACATCGTTAATC+AGG - chr2_2:5932810-5932829 None:intergenic 35.0%
ACATGTTCTTTGAGCCATAT+AGG - chr2_2:5932862-5932881 None:intergenic 35.0%
CTAAACATTACTACACCACA+AGG - chr2_2:5932979-5932998 None:intergenic 35.0%
! ATTTTGTACTTTTGCTGCAG+GGG + chr2_2:5933004-5933023 Msa0233570:intron 35.0%
CCTGCTGATAAATAAACAGT+TGG - chr2_2:5933059-5933078 None:intergenic 35.0%
CCAACTGTTTATTTATCAGC+AGG + chr2_2:5933056-5933075 Msa0233570:CDS 35.0%
! AAAGGATTTGAGGTACATGT+TGG - chr2_2:5933149-5933168 None:intergenic 35.0%
TAGATAGAGAAGTGAAAACC+AGG - chr2_2:5933190-5933209 None:intergenic 35.0%
TAAGGGTTCATAAGAGATAG+AGG - chr2_2:5933333-5933352 None:intergenic 35.0%
! TTTCTAGCATTGAATGCACT+TGG + chr2_2:5933380-5933399 Msa0233570:CDS 35.0%
CAATTTGGTCCTAGAAATTC+AGG + chr2_2:5933430-5933449 Msa0233570:CDS 35.0%
GCAACACAAGAACAATTTCT+GGG - chr2_2:5933469-5933488 None:intergenic 35.0%
TCACAAAACTTCAACCTGTT+TGG + chr2_2:5933769-5933788 Msa0233570:intron 35.0%
GGATTTGTCTCATTCTTCAT+AGG + chr2_2:5934373-5934392 Msa0233570:CDS 35.0%
CAAGGATATGCAAAAGTAAC+TGG - chr2_2:5934454-5934473 None:intergenic 35.0%
! TTGCATATCCTTGTTTCATG+TGG + chr2_2:5934461-5934480 Msa0233570:CDS 35.0%
! TGCATATCCTTGTTTCATGT+GGG + chr2_2:5934462-5934481 Msa0233570:CDS 35.0%
ATAAGAACCCACATGAAACA+AGG - chr2_2:5934472-5934491 None:intergenic 35.0%
! GCTTCAGTTGGTATTTCAAT+TGG + chr2_2:5934512-5934531 Msa0233570:CDS 35.0%
! AATTGGATTCTTGGTTGGTT+AGG + chr2_2:5934529-5934548 Msa0233570:CDS 35.0%
TTGAATGTAACCACATGTGT+TGG - chr2_2:5934703-5934722 None:intergenic 35.0%
TATGTACAGATACTAACACG+TGG - chr2_2:5934757-5934776 None:intergenic 35.0%
TGTCATGCAAATGTACATGA+TGG + chr2_2:5934785-5934804 Msa0233570:three_prime_UTR 35.0%
TTCACTTCTCAAACTCATAG+AGG - chr2_2:5934959-5934978 None:intergenic 35.0%
CTCTATGAATTGGTCAATCG+TGG - chr2_2:5928578-5928597 None:intergenic 40.0%
CACGATTGACCAATTCATAG+AGG + chr2_2:5928576-5928595 Msa0233570:intron 40.0%
!! TTATCGGAGAGAGCTTTGTT+TGG + chr2_2:5928780-5928799 Msa0233570:intron 40.0%
!! TATCGGAGAGAGCTTTGTTT+GGG + chr2_2:5928781-5928800 Msa0233570:intron 40.0%
CGAGGATGAGATCCATATTA+CGG + chr2_2:5928964-5928983 Msa0233570:CDS 40.0%
CAAAACCTTTGGCCGTAATA+TGG - chr2_2:5928979-5928998 None:intergenic 40.0%
! TATTACGGCCAAAGGTTTTG+AGG + chr2_2:5928979-5928998 Msa0233570:intron 40.0%
TCTCAACTCCTCAAAACCTT+TGG - chr2_2:5928990-5929009 None:intergenic 40.0%
! TTTGGGAAGTGAGTTGAATC+GGG + chr2_2:5929124-5929143 Msa0233570:intron 40.0%
AGATAAGTTTGACCTCGATG+TGG + chr2_2:5929230-5929249 Msa0233570:intron 40.0%
!! CTCCATTGTTTTTCTGGAGA+AGG - chr2_2:5929299-5929318 None:intergenic 40.0%
CTTCTCCAGAAAAACAATGG+AGG + chr2_2:5929297-5929316 Msa0233570:intron 40.0%
ATGATTGTTGGGGTCATTAG+GGG - chr2_2:5929787-5929806 None:intergenic 40.0%
GATGATTGTTGGGGTCATTA+GGG - chr2_2:5929788-5929807 None:intergenic 40.0%
AGATGATTGTTGGGGTCATT+AGG - chr2_2:5929789-5929808 None:intergenic 40.0%
TGGTAACAAAAGTAGCCGAA+AGG - chr2_2:5929913-5929932 None:intergenic 40.0%
TTAGTACTTGTGGGTCTCTA+TGG - chr2_2:5929933-5929952 None:intergenic 40.0%
GTGAGTGTGTTAGTACTTGT+GGG - chr2_2:5929942-5929961 None:intergenic 40.0%
AGTGAGTGTGTTAGTACTTG+TGG - chr2_2:5929943-5929962 None:intergenic 40.0%
TAATGCGGATTCCTAGTGTT+TGG - chr2_2:5930138-5930157 None:intergenic 40.0%
! ATGCATGGTTGATATCACAG+TGG - chr2_2:5930500-5930519 None:intergenic 40.0%
!! GGATCAGGTGATTTTAGTGA+TGG + chr2_2:5930562-5930581 Msa0233570:intron 40.0%
!! TCAGGTGATTTTAGTGATGG+AGG + chr2_2:5930565-5930584 Msa0233570:intron 40.0%
ATTGATATCAGCTCTGTCTC+TGG - chr2_2:5930596-5930615 None:intergenic 40.0%
CCTATAGGACTCAAAAACCT+TGG - chr2_2:5930740-5930759 None:intergenic 40.0%
!!! CCAAGGTTTTTGAGTCCTAT+AGG + chr2_2:5930737-5930756 Msa0233570:CDS 40.0%
!! CTTTTCATTGGTGTCCCTAT+AGG - chr2_2:5930755-5930774 None:intergenic 40.0%
CTATAGGGACACCAATGAAA+AGG + chr2_2:5930753-5930772 Msa0233570:CDS 40.0%
CATAATCTCAATGCTGGTGT+TGG + chr2_2:5930896-5930915 Msa0233570:CDS 40.0%
CCAAGATAAGCAAAAGCAAC+AGG - chr2_2:5930941-5930960 None:intergenic 40.0%
!!! CCTGTTGCTTTTGCTTATCT+TGG + chr2_2:5930938-5930957 Msa0233570:CDS 40.0%
!! TTGCTTTTGCTTATCTTGGC+TGG + chr2_2:5930942-5930961 Msa0233570:CDS 40.0%
!! CCACTAAAAAGCACCACTAA+TGG - chr2_2:5931456-5931475 None:intergenic 40.0%
!! CCATTAGTGGTGCTTTTTAG+TGG + chr2_2:5931453-5931472 Msa0233570:intron 40.0%
!!! AGGAAGGGATTTTGAAATGC+GGG + chr2_2:5931629-5931648 Msa0233570:intron 40.0%
GTAACCACTAAGCAACTTGA+TGG - chr2_2:5931828-5931847 None:intergenic 40.0%
AGACGACTGATATTGTGAGA+CGG - chr2_2:5931859-5931878 None:intergenic 40.0%
CTCACAATATCAGTCGTCTA+AGG + chr2_2:5931860-5931879 Msa0233570:intron 40.0%
AGACTGTTCGAGAGAGTTTA+TGG + chr2_2:5932228-5932247 Msa0233570:intron 40.0%
ACAAGTTATGGACCTGTCAT+AGG - chr2_2:5932260-5932279 None:intergenic 40.0%
!! TAGAAGCATAGGCCTTGTTT+GGG - chr2_2:5932442-5932461 None:intergenic 40.0%
!! ATAGAAGCATAGGCCTTGTT+TGG - chr2_2:5932443-5932462 None:intergenic 40.0%
GTTTCATCCAAATGTTCTGC+AGG + chr2_2:5932579-5932598 Msa0233570:intron 40.0%
GGGAATTATTTCCTTAACCG+TGG + chr2_2:5932607-5932626 Msa0233570:CDS 40.0%
GTTGGCAACTTTACACCTTA+TGG + chr2_2:5932636-5932655 Msa0233570:CDS 40.0%
CAGCTGAACCAAAATCCATA+AGG - chr2_2:5932654-5932673 None:intergenic 40.0%
ATGAAGCAGTTCCAGGTAAA+AGG + chr2_2:5932675-5932694 Msa0233570:CDS 40.0%
TGTTAGTCACTCAGAAACCT+CGG + chr2_2:5932879-5932898 Msa0233570:intron 40.0%
TCTAACACATGCTATCCTTG+TGG + chr2_2:5932961-5932980 Msa0233570:intron 40.0%
CACCGTTGTTAAAGGATTTG+AGG - chr2_2:5933159-5933178 None:intergenic 40.0%
CTCAAATCCTTTAACAACGG+TGG + chr2_2:5933157-5933176 Msa0233570:CDS 40.0%
CCTGCAATTGAATTGAGGTT+TGG - chr2_2:5933230-5933249 None:intergenic 40.0%
CCAAACCTCAATTCAATTGC+AGG + chr2_2:5933227-5933246 Msa0233570:CDS 40.0%
ACAGTCCTGCAATTGAATTG+AGG - chr2_2:5933235-5933254 None:intergenic 40.0%
ATTGCAGGACTGTCACTAAT+AGG + chr2_2:5933242-5933261 Msa0233570:CDS 40.0%
GTCACTAATAGGAGCTGTTA+CGG + chr2_2:5933253-5933272 Msa0233570:CDS 40.0%
! AACCATGGTGGAGTAAGTAA+TGG - chr2_2:5933279-5933298 None:intergenic 40.0%
TTACTTACTCCACCATGGTT+TGG + chr2_2:5933279-5933298 Msa0233570:CDS 40.0%
TACTTACTCCACCATGGTTT+GGG + chr2_2:5933280-5933299 Msa0233570:CDS 40.0%
GGTTCATAAGAGATAGAGGA+TGG - chr2_2:5933329-5933348 None:intergenic 40.0%
GGCAACACAAGAACAATTTC+TGG - chr2_2:5933470-5933489 None:intergenic 40.0%
!!! TACGCACTTTGTTTTCATGC+AGG + chr2_2:5933523-5933542 Msa0233570:intron 40.0%
TGCAATGTGCTTATTCCCTA+TGG + chr2_2:5933622-5933641 Msa0233570:CDS 40.0%
TTTACTTACTTGGTTCCCGT+AGG - chr2_2:5933666-5933685 None:intergenic 40.0%
AGACTATTTCGGAGAACTTG+TGG - chr2_2:5933950-5933969 None:intergenic 40.0%
TTGAAACAGATGCCTAATGG+AGG + chr2_2:5934145-5934164 Msa0233570:intron 40.0%
TGAAACAGATGCCTAATGGA+GGG + chr2_2:5934146-5934165 Msa0233570:intron 40.0%
CACAGTCATGACATTTCAAG+AGG + chr2_2:5934193-5934212 Msa0233570:CDS 40.0%
CACTACAAGAAGGAATGCTA+AGG - chr2_2:5934227-5934246 None:intergenic 40.0%
AACAGCTGAACACTACAAGA+AGG - chr2_2:5934237-5934256 None:intergenic 40.0%
AAACCGTCCTTGCTCAATAT+GGG + chr2_2:5934324-5934343 Msa0233570:CDS 40.0%
TGTCTCATTCTTCATAGGAG+TGG + chr2_2:5934378-5934397 Msa0233570:CDS 40.0%
!! TCAAGTCTTGCTGGTTTGTT+AGG + chr2_2:5934415-5934434 Msa0233570:CDS 40.0%
CCAAATACCTCCAATGGAAA+AGG - chr2_2:5934572-5934591 None:intergenic 40.0%
!!! CCTTTTCCATTGGAGGTATT+TGG + chr2_2:5934569-5934588 Msa0233570:CDS 40.0%
CATACTCCAAATACCTCCAA+TGG - chr2_2:5934578-5934597 None:intergenic 40.0%
!! CATTGGAGGTATTTGGAGTA+TGG + chr2_2:5934576-5934595 Msa0233570:CDS 40.0%
! ATTTGGAGTATGGTCAACGA+TGG + chr2_2:5934586-5934605 Msa0233570:CDS 40.0%
GCTTAATGTGTGAGATGAGA+AGG + chr2_2:5935051-5935070 Msa0233570:three_prime_UTR 40.0%
GAAGATGCAAACAACTGAGT+TGG + chr2_2:5935092-5935111 Msa0233570:three_prime_UTR 40.0%
GTGAAGCTTGGAATTGTGTT+GGG - chr2_2:5935123-5935142 Msa0233580:CDS 40.0%
! TGAAAATCAATGGTGGAGGA+AGG - chr2_2:5935182-5935201 Msa0233580:CDS 40.0%
!!! TTCCTCCACCATTGATTTTC+AGG + chr2_2:5935181-5935200 Msa0233570:three_prime_UTR 40.0%
ATCCTGAAAATCAATGGTGG+AGG - chr2_2:5935186-5935205 Msa0233580:CDS 40.0%
GCAATCCTGAAAATCAATGG+TGG - chr2_2:5935189-5935208 Msa0233580:CDS 40.0%
GCTGCAATCCTGAAAATCAA+TGG - chr2_2:5935192-5935211 Msa0233580:CDS 40.0%
TTTCTGTTCAACAAGAGCAG+AGG - chr2_2:5935264-5935283 Msa0233580:intron 40.0%
CTATAATTGACCAAGTCGTG+GGG - chr2_2:5935421-5935440 Msa0233580:intron 40.0%
GCTATAATTGACCAAGTCGT+GGG - chr2_2:5935422-5935441 Msa0233580:intron 40.0%
TGCTATAATTGACCAAGTCG+TGG - chr2_2:5935423-5935442 Msa0233580:intron 40.0%
TGGAGCGAGATTTCGTTACT+TGG + chr2_2:5928538-5928557 Msa0233570:CDS 45.0%
GGAGCGAGATTTCGTTACTT+GGG + chr2_2:5928539-5928558 Msa0233570:CDS 45.0%
TGGTTGCTGATATGAGTACG+TGG + chr2_2:5928721-5928740 Msa0233570:intron 45.0%
CTGATATGAGTACGTGGTGT+GGG + chr2_2:5928727-5928746 Msa0233570:intron 45.0%
!! AGTGAGGGTGTGATTTGCTT+TGG + chr2_2:5928750-5928769 Msa0233570:intron 45.0%
!! GTGAGGGTGTGATTTGCTTT+GGG + chr2_2:5928751-5928770 Msa0233570:intron 45.0%
!! ATCGGAGAGAGCTTTGTTTG+GGG + chr2_2:5928782-5928801 Msa0233570:intron 45.0%
TGAAATTCTTATGGTGGCCC+TGG + chr2_2:5928817-5928836 Msa0233570:intron 45.0%
GAACACCTACAACCAATCCA+GGG - chr2_2:5928837-5928856 None:intergenic 45.0%
GTTCCCAAGATAGTGACTTC+CGG + chr2_2:5928853-5928872 Msa0233570:CDS 45.0%
AGACCGGAAGTCACTATCTT+GGG - chr2_2:5928859-5928878 None:intergenic 45.0%
AAGACCGGAAGTCACTATCT+TGG - chr2_2:5928860-5928879 None:intergenic 45.0%
AAGATAGTGACTTCCGGTCT+TGG + chr2_2:5928859-5928878 Msa0233570:CDS 45.0%
CCAAGTCAAACTTCCAAGAC+CGG - chr2_2:5928875-5928894 None:intergenic 45.0%
! CGGTCTTGGAAGTTTGACTT+GGG + chr2_2:5928873-5928892 Msa0233570:CDS 45.0%
GGCATATTCGTTCCTTTCAG+TGG + chr2_2:5928918-5928937 Msa0233570:CDS 45.0%
TTCCTTTCAGTGGCCTATCT+TGG + chr2_2:5928928-5928947 Msa0233570:CDS 45.0%
TTTCAGTGGCCTATCTTGGA+GGG + chr2_2:5928932-5928951 Msa0233570:CDS 45.0%
!! TGTTGGTTTCCCTCCAAGAT+AGG - chr2_2:5928944-5928963 None:intergenic 45.0%
TATGGATCTCATCCTCGTGT+TGG - chr2_2:5928961-5928980 None:intergenic 45.0%
GAGATCCATATTACGGCCAA+AGG + chr2_2:5928971-5928990 Msa0233570:CDS 45.0%
! TTGGGAAGTGAGTTGAATCG+GGG + chr2_2:5929125-5929144 Msa0233570:intron 45.0%
CACAACATATAGCCACATCG+AGG - chr2_2:5929245-5929264 None:intergenic 45.0%
CGATGTGGCTATATGTTGTG+TGG + chr2_2:5929245-5929264 Msa0233570:intron 45.0%
TGATTGTTGGGGTCATTAGG+GGG - chr2_2:5929786-5929805 None:intergenic 45.0%
! CCGTTGATGAATGTAGTGGT+GGG - chr2_2:5929863-5929882 None:intergenic 45.0%
CCCACCACTACATTCATCAA+CGG + chr2_2:5929860-5929879 Msa0233570:intron 45.0%
! ACCGTTGATGAATGTAGTGG+TGG - chr2_2:5929864-5929883 None:intergenic 45.0%
! GTGACCGTTGATGAATGTAG+TGG - chr2_2:5929867-5929886 None:intergenic 45.0%
AGTGTTTGGTCGACAAGTGT+GGG - chr2_2:5930124-5930143 None:intergenic 45.0%
TAGTGTTTGGTCGACAAGTG+TGG - chr2_2:5930125-5930144 None:intergenic 45.0%
ACACTTGTCGACCAAACACT+AGG + chr2_2:5930124-5930143 Msa0233570:intron 45.0%
!! ATCTCTGGTGTTGACACTCT+TGG - chr2_2:5930629-5930648 None:intergenic 45.0%
TACTGACACCATCAGGACAA+AGG + chr2_2:5930648-5930667 Msa0233570:CDS 45.0%
GTCACCAAGACAAGGATCAA+AGG + chr2_2:5930670-5930689 Msa0233570:CDS 45.0%
GCTTCCTTTGATCCTTGTCT+TGG - chr2_2:5930677-5930696 None:intergenic 45.0%
TGCATCTTGAGGGTTAAGCT+TGG - chr2_2:5930825-5930844 None:intergenic 45.0%
AGCTTAACCCTCAAGATGCA+TGG + chr2_2:5930825-5930844 Msa0233570:CDS 45.0%
TAGGAAGCCATGCATCTTGA+GGG - chr2_2:5930835-5930854 None:intergenic 45.0%
ATAGGAAGCCATGCATCTTG+AGG - chr2_2:5930836-5930855 None:intergenic 45.0%
GGCTTCCTATAACTGAGTCT+CGG + chr2_2:5930846-5930865 Msa0233570:CDS 45.0%
CCATTCCGAGACTCAGTTAT+AGG - chr2_2:5930854-5930873 None:intergenic 45.0%
CCTATAACTGAGTCTCGGAA+TGG + chr2_2:5930851-5930870 Msa0233570:CDS 45.0%
!!! CAATGCTGGTGTTGGTTTTC+AGG + chr2_2:5930904-5930923 Msa0233570:CDS 45.0%
TTTCAACAAGCCTGCCTCAA+TGG + chr2_2:5931658-5931677 Msa0233570:intron 45.0%
CTGCCTCAATGGAAAGAGAT+GGG + chr2_2:5931669-5931688 Msa0233570:intron 45.0%
TGCCTCAATGGAAAGAGATG+GGG + chr2_2:5931670-5931689 Msa0233570:intron 45.0%
! CAACTTGATGGCCAACACAA+TGG - chr2_2:5931816-5931835 None:intergenic 45.0%
! TTGGCCATCAAGTTGCTTAG+TGG + chr2_2:5931821-5931840 Msa0233570:intron 45.0%
GACTGATATTGTGAGACGGA+GGG - chr2_2:5931855-5931874 None:intergenic 45.0%
TCCAAATGTTCTGCAGGAGT+TGG + chr2_2:5932585-5932604 Msa0233570:intron 45.0%
CCAAATGTTCTGCAGGAGTT+GGG + chr2_2:5932586-5932605 Msa0233570:intron 45.0%
CAAATGTTCTGCAGGAGTTG+GGG + chr2_2:5932587-5932606 Msa0233570:intron 45.0%
AAGTTGCCAACAGTATGCCA+CGG - chr2_2:5932627-5932646 None:intergenic 45.0%
CTCAGAAACCTCGGCAAAAT+TGG + chr2_2:5932888-5932907 Msa0233570:intron 45.0%
! AAGTTCAGCCAATTTTGCCG+AGG - chr2_2:5932899-5932918 None:intergenic 45.0%
TTTGCTGCAGGGGAAAGATT+AGG + chr2_2:5933014-5933033 Msa0233570:intron 45.0%
CAGGGGAAAGATTAGGAGTA+TGG + chr2_2:5933021-5933040 Msa0233570:intron 45.0%
! GCAACAGCTTTGATTCTCGT+TGG + chr2_2:5933083-5933102 Msa0233570:CDS 45.0%
! ACAGCTTTGATTCTCGTTGG+AGG + chr2_2:5933086-5933105 Msa0233570:CDS 45.0%
! CAGCTTTGATTCTCGTTGGA+GGG + chr2_2:5933087-5933106 Msa0233570:CDS 45.0%
! AGCTTTGATTCTCGTTGGAG+GGG + chr2_2:5933088-5933107 Msa0233570:CDS 45.0%
ATCCTTTAACAACGGTGGAG+TGG + chr2_2:5933162-5933181 Msa0233570:CDS 45.0%
TACCACTCCACCGTTGTTAA+AGG - chr2_2:5933167-5933186 None:intergenic 45.0%
CTCTTATGAACCCTTATCGC+TGG + chr2_2:5933337-5933356 Msa0233570:CDS 45.0%
! GAAGGTTTTGCCAGCGATAA+GGG - chr2_2:5933350-5933369 None:intergenic 45.0%
! AGAAGGTTTTGCCAGCGATA+AGG - chr2_2:5933351-5933370 None:intergenic 45.0%
CTTAAACGTTGACGGCATTG+TGG - chr2_2:5933549-5933568 None:intergenic 45.0%
TGCTTATTCCCTATGGCCAT+TGG + chr2_2:5933629-5933648 Msa0233570:CDS 45.0%
TTATTCCCTATGGCCATTGG+AGG + chr2_2:5933632-5933651 Msa0233570:CDS 45.0%
AAAAGCCTCCAATGGCCATA+GGG - chr2_2:5933640-5933659 None:intergenic 45.0%
! TATGGCCATTGGAGGCTTTT+GGG + chr2_2:5933640-5933659 Msa0233570:CDS 45.0%
ACTGTACTGGAGTGATAGAG+AGG + chr2_2:5933692-5933711 Msa0233570:intron 45.0%
GCTGTCAAAATCCCTCCATT+AGG - chr2_2:5934160-5934179 None:intergenic 45.0%
GCTTCAAAACTGTCGAAAGC+AGG - chr2_2:5934286-5934305 None:intergenic 45.0%
!!! GCTTTCGACAGTTTTGAAGC+CGG + chr2_2:5934286-5934305 Msa0233570:CDS 45.0%
CAAACCGTCCTTGCTCAATA+TGG + chr2_2:5934323-5934342 Msa0233570:CDS 45.0%
GAACCCATATTGAGCAAGGA+CGG - chr2_2:5934330-5934349 None:intergenic 45.0%
GTCCTTGCTCAATATGGGTT+CGG + chr2_2:5934329-5934348 Msa0233570:CDS 45.0%
ACAAACCAGCAAGACTTGAG+AGG - chr2_2:5934414-5934433 None:intergenic 45.0%
!! AGTCTTGCTGGTTTGTTAGG+AGG + chr2_2:5934418-5934437 Msa0233570:CDS 45.0%
!! GTTAGGTGTTGCTTTCAGCT+TGG + chr2_2:5934546-5934565 Msa0233570:CDS 45.0%
!! TTCAGCTTGGCCTTTTCCAT+TGG + chr2_2:5934559-5934578 Msa0233570:CDS 45.0%
! GTAACCACATGTGTTGGTGT+TGG - chr2_2:5934697-5934716 None:intergenic 45.0%
GGTGAAGCTTGGAATTGTGT+TGG - chr2_2:5935124-5935143 Msa0233580:CDS 45.0%
!!! AAAAATTTGATTATATTTTT+TGG + chr2_2:5930541-5930560 Msa0233570:intron 5.0%
!! TAAAATAAAATAAAGTAAAA+GGG - chr2_2:5931417-5931436 None:intergenic 5.0%
!! ATAAAATAAAATAAAGTAAA+AGG - chr2_2:5931418-5931437 None:intergenic 5.0%
GCTGATATGAGTACGTGGTG+TGG + chr2_2:5928726-5928745 Msa0233570:intron 50.0%
!! GCTTTGTTTGGGGACATGAC+AGG + chr2_2:5928792-5928811 Msa0233570:intron 50.0%
TTCTTATGGTGGCCCTGGAT+TGG + chr2_2:5928822-5928841 Msa0233570:intron 50.0%
GGAACACCTACAACCAATCC+AGG - chr2_2:5928838-5928857 None:intergenic 50.0%
CCGGTCTTGGAAGTTTGACT+TGG + chr2_2:5928872-5928891 Msa0233570:CDS 50.0%
CTCCAAGATAGGCCACTGAA+AGG - chr2_2:5928933-5928952 None:intergenic 50.0%
CTTTCAGTGGCCTATCTTGG+AGG + chr2_2:5928931-5928950 Msa0233570:CDS 50.0%
GAGGAGTTGAGACTCGTCTA+AGG + chr2_2:5928998-5929017 Msa0233570:intron 50.0%
!! GTTGACACTCTTGGTGTTGC+TGG - chr2_2:5930620-5930639 None:intergenic 50.0%
! CCTGATGGTGTCAGTATCTC+TGG - chr2_2:5930644-5930663 None:intergenic 50.0%
CCAGAGATACTGACACCATC+AGG + chr2_2:5930641-5930660 Msa0233570:CDS 50.0%
! CTTGGTGACCTTTGTCCTGA+TGG - chr2_2:5930659-5930678 None:intergenic 50.0%
GGACAAAGGTCACCAAGACA+AGG + chr2_2:5930662-5930681 Msa0233570:CDS 50.0%
CCATCTCTTTCCATTGAGGC+AGG - chr2_2:5931671-5931690 None:intergenic 50.0%
CCTGCCTCAATGGAAAGAGA+TGG + chr2_2:5931668-5931687 Msa0233570:intron 50.0%
GCCTCAATGGAAAGAGATGG+GGG + chr2_2:5931671-5931690 Msa0233570:intron 50.0%
TCCCCCATCTCTTTCCATTG+AGG - chr2_2:5931675-5931694 None:intergenic 50.0%
ATGGAAAGAGATGGGGGAGA+AGG + chr2_2:5931677-5931696 Msa0233570:intron 50.0%
CGACTGATATTGTGAGACGG+AGG - chr2_2:5931856-5931875 None:intergenic 50.0%
CTCTCGAACAGTCTCACAAC+TGG - chr2_2:5932222-5932241 None:intergenic 50.0%
CCCAACTCCTGCAGAACATT+TGG - chr2_2:5932589-5932608 None:intergenic 50.0%
CCAACAGTATGCCACGGTTA+AGG - chr2_2:5932621-5932640 None:intergenic 50.0%
CCTTAACCGTGGCATACTGT+TGG + chr2_2:5932618-5932637 Msa0233570:CDS 50.0%
GAGCTAGCACAAGCAGCATT+CGG + chr2_2:5932713-5932732 Msa0233570:CDS 50.0%
GGCCATTACTTACTCCACCA+TGG + chr2_2:5933274-5933293 Msa0233570:CDS 50.0%
AGATAGAGGATGGCCTCTGT+TGG - chr2_2:5933319-5933338 None:intergenic 50.0%
ACCTTGGCTCCTTTCCACAT+TGG - chr2_2:5933587-5933606 None:intergenic 50.0%
CAAAAGCCTCCAATGGCCAT+AGG - chr2_2:5933641-5933660 None:intergenic 50.0%
! CTATGGCCATTGGAGGCTTT+TGG + chr2_2:5933639-5933658 Msa0233570:CDS 50.0%
! ATTGGAGGCTTTTGGGCCTA+CGG + chr2_2:5933647-5933666 Msa0233570:CDS 50.0%
GTACTGGAGTGATAGAGAGG+AGG + chr2_2:5933695-5933714 Msa0233570:intron 50.0%
GTTTGTTCGACTGGTGTAGC+CGG - chr2_2:5934308-5934327 None:intergenic 50.0%
GACCGAACCCATATTGAGCA+AGG - chr2_2:5934334-5934353 None:intergenic 50.0%
! TGCTCAATATGGGTTCGGTC+AGG + chr2_2:5934334-5934353 Msa0233570:CDS 50.0%
CCAGCAAGACTTGAGAGGAA+TGG - chr2_2:5934409-5934428 None:intergenic 50.0%
CCATTCCTCTCAAGTCTTGC+TGG + chr2_2:5934406-5934425 Msa0233570:CDS 50.0%
!! AGCTTGGCCTTTTCCATTGG+AGG + chr2_2:5934562-5934581 Msa0233570:CDS 50.0%
!! CATGTGTTGGTGTTGGACAC+TGG - chr2_2:5934690-5934709 None:intergenic 50.0%
GTGTCCAACACCAACACATG+TGG + chr2_2:5934690-5934709 Msa0233570:three_prime_UTR 50.0%
! AGAAGGTGCAGCACATGATG+TGG + chr2_2:5935068-5935087 Msa0233570:three_prime_UTR 50.0%
CGTGGGGCAGTTTAGTAACA+TGG - chr2_2:5935405-5935424 Msa0233580:intron 50.0%
TACTAAACTGCCCCACGACT+TGG + chr2_2:5935408-5935427 Msa0233570:three_prime_UTR 50.0%
AGTACGTGGTGTGGGAGTGA+GGG + chr2_2:5928735-5928754 Msa0233570:intron 55.0%
CTTGGAGGGAAACCAACACG+AGG + chr2_2:5928946-5928965 Msa0233570:CDS 55.0%
TGGCAAAGGGGCCATTGTGT+TGG + chr2_2:5931802-5931821 Msa0233570:intron 55.0%
CAGCTGCATGAAGCAGTTCC+AGG + chr2_2:5932668-5932687 Msa0233570:CDS 55.0%
AACAACGGTGGAGTGGTACC+TGG + chr2_2:5933169-5933188 Msa0233570:CDS 55.0%
!! AGAGAGCACCCAAACCATGG+TGG - chr2_2:5933291-5933310 None:intergenic 55.0%
!! CACAGAGAGCACCCAAACCA+TGG - chr2_2:5933294-5933313 None:intergenic 55.0%
TGCTCTCTGTGAGCCAACAG+AGG + chr2_2:5933303-5933322 Msa0233570:CDS 55.0%
GCCGTCAACGTTTAAGCACC+CGG + chr2_2:5933553-5933572 Msa0233570:CDS 55.0%
GCCGGGTGCTTAAACGTTGA+CGG - chr2_2:5933557-5933576 None:intergenic 55.0%
TTCCACATTGGCACACGAGC+CGG - chr2_2:5933575-5933594 None:intergenic 55.0%
GCTCGTGTGCCAATGTGGAA+AGG + chr2_2:5933575-5933594 Msa0233570:CDS 55.0%
GCCAATGTGGAAAGGAGCCA+AGG + chr2_2:5933583-5933602 Msa0233570:CDS 55.0%
GTAGGCCCAAAAGCCTCCAA+TGG - chr2_2:5933648-5933667 None:intergenic 55.0%
! TTGGAGGCTTTTGGGCCTAC+GGG + chr2_2:5933648-5933667 Msa0233570:CDS 55.0%
! GCAAGGACGGTTTGTTCGAC+TGG - chr2_2:5934317-5934336 None:intergenic 55.0%
GGTGGAGGAAGGATCATCTG+TGG - chr2_2:5935171-5935190 Msa0233580:CDS 55.0%
GAGTACGTGGTGTGGGAGTG+AGG + chr2_2:5928734-5928753 Msa0233570:intron 60.0%
!! GGTGGCCCTGGATTGGTTGT+AGG + chr2_2:5928829-5928848 Msa0233570:intron 60.0%
GGTCATTAGGGGGAGTGGAG+TGG - chr2_2:5929776-5929795 None:intergenic 60.0%
GTTGGGGTCATTAGGGGGAG+TGG - chr2_2:5929781-5929800 None:intergenic 60.0%
TCCACATTGGCACACGAGCC+GGG - chr2_2:5933574-5933593 None:intergenic 60.0%
AAGCGGGGTCAGGTGAAGCT+TGG - chr2_2:5935135-5935154 Msa0233580:CDS 60.0%
AGCTTCACCTGACCCCGCTT+CGG + chr2_2:5935135-5935154 Msa0233570:three_prime_UTR 60.0%
ACCTGACCCCGCTTCGGAAT+CGG + chr2_2:5935141-5935160 Msa0233570:three_prime_UTR 60.0%
! ACCCGGCTCGTGTGCCAATG+TGG + chr2_2:5933570-5933589 Msa0233570:CDS 65.0%
TCCGATTCCGAAGCGGGGTC+AGG - chr2_2:5935145-5935164 Msa0233580:CDS 65.0%
GACCCCGCTTCGGAATCGGA+CGG + chr2_2:5935145-5935164 Msa0233570:three_prime_UTR 65.0%
TGGCCGTCCGATTCCGAAGC+GGG - chr2_2:5935151-5935170 Msa0233580:CDS 65.0%
GTGGCCGTCCGATTCCGAAG+CGG - chr2_2:5935152-5935171 Msa0233580:CDS 65.0%
GGCCGTCCGATTCCGAAGCG+GGG - chr2_2:5935150-5935169 Msa0233580:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 5928526 5935476 5928526 ID=Msa0233570;Name=Msa0233570
chr2_2 mRNA 5928526 5935476 5928526 ID=Msa0233570-mRNA-1;Parent=Msa0233570;Name=Msa0233570-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.66|0.71|0.71|1|1|7|837|583
chr2_2 exon 5928526 5928560 5928526 ID=Msa0233570-mRNA-1:exon:2577;Parent=Msa0233570-mRNA-1
chr2_2 exon 5928851 5928992 5928851 ID=Msa0233570-mRNA-1:exon:2578;Parent=Msa0233570-mRNA-1
chr2_2 exon 5930569 5930963 5930569 ID=Msa0233570-mRNA-1:exon:2579;Parent=Msa0233570-mRNA-1
chr2_2 exon 5932601 5932734 5932601 ID=Msa0233570-mRNA-1:exon:2580;Parent=Msa0233570-mRNA-1
chr2_2 exon 5933024 5933451 5933024 ID=Msa0233570-mRNA-1:exon:2581;Parent=Msa0233570-mRNA-1
chr2_2 exon 5933545 5933676 5933545 ID=Msa0233570-mRNA-1:exon:2582;Parent=Msa0233570-mRNA-1
chr2_2 exon 5934154 5935476 5934154 ID=Msa0233570-mRNA-1:exon:2583;Parent=Msa0233570-mRNA-1
chr2_2 CDS 5928526 5928560 5928526 ID=Msa0233570-mRNA-1:cds;Parent=Msa0233570-mRNA-1
chr2_2 CDS 5928851 5928992 5928851 ID=Msa0233570-mRNA-1:cds;Parent=Msa0233570-mRNA-1
chr2_2 CDS 5930569 5930963 5930569 ID=Msa0233570-mRNA-1:cds;Parent=Msa0233570-mRNA-1
chr2_2 CDS 5932601 5932734 5932601 ID=Msa0233570-mRNA-1:cds;Parent=Msa0233570-mRNA-1
chr2_2 CDS 5933024 5933451 5933024 ID=Msa0233570-mRNA-1:cds;Parent=Msa0233570-mRNA-1
chr2_2 CDS 5933545 5933676 5933545 ID=Msa0233570-mRNA-1:cds;Parent=Msa0233570-mRNA-1
chr2_2 CDS 5934154 5934639 5934154 ID=Msa0233570-mRNA-1:cds;Parent=Msa0233570-mRNA-1
chr2_2 three_prime_UTR 5934640 5935476 5934640 ID=Msa0233570-mRNA-1:three_prime_utr;Parent=Msa0233570-mRNA-1
Gene Sequence

>Msa0233570

ATGTCGTCTTGGTGGAGCGAGATTTCGTTACTTGGGTGTTCCCAAGATAGTGACTTCCGGTCTTGGAAGTTTGACTTGGGCGAAATTTACTCTGTTAGTTTTGGCATATTCGTTCCTTTCAGTGGCCTATCTTGGAGGGAAACCAACACGAGGATGAGATCCATATTACGGCCAAAGGTGATTTTAGTGATGGAGGAGAGACCAGAGACAGAGCTGATATCAATACCAGCAACACCAAGAGTGTCAACACCAGAGATACTGACACCATCAGGACAAAGGTCACCAAGACAAGGATCAAAGGAAGCTAAATCATCAAATGCATGGACACCAACATCTTTTATATCACCAAGGTTTTTGAGTCCTATAGGGACACCAATGAAAAGGGTACTTATAAACATGAAGGGTTATTTGGAAGATGTTGGTCATCTTACCAAGCTTAACCCTCAAGATGCATGGCTTCCTATAACTGAGTCTCGGAATGGAAATGCTCATTATTCTACTTTTCATAATCTCAATGCTGGTGTTGGTTTTCAGGCTCTTGTTTTGCCTGTTGCTTTTGCTTATCTTGGCTGGAGTTGGGGAATTATTTCCTTAACCGTGGCATACTGTTGGCAACTTTACACCTTATGGATTTTGGTTCAGCTGCATGAAGCAGTTCCAGGTAAAAGGTACAACAGATATGTGGAGCTAGCACAAGCAGCATTCGGGGAAAGATTAGGAGTATGGCTTGCTCTTTTCCCAACTGTTTATTTATCAGCAGGAACTGCAACAGCTTTGATTCTCGTTGGAGGGGAGACCATGAAACTGTTCTTTCAAATAGTTTGTGGTCCAACATGTACCTCAAATCCTTTAACAACGGTGGAGTGGTACCTGGTTTTCACTTCTCTATCTATTGTTCTTTCTCAGCTTCCAAACCTCAATTCAATTGCAGGACTGTCACTAATAGGAGCTGTTACGGCCATTACTTACTCCACCATGGTTTGGGTGCTCTCTGTGAGCCAACAGAGGCCATCCTCTATCTCTTATGAACCCTTATCGCTGGCAAAACCTTCTTCTTCATTATTTCTAGCATTGAATGCACTTGGAATTATAGCATTTTCTTTTAGAGGTCACAATTTGGTCCTAGAAATTCAGGCCACAATGCCGTCAACGTTTAAGCACCCGGCTCGTGTGCCAATGTGGAAAGGAGCCAAGGTTGCTTATTTCTTTATTGCAATGTGCTTATTCCCTATGGCCATTGGAGGCTTTTGGGCCTACGGGAACCAAATGCCTAATGGAGGGATTTTGACAGCTCTATATGCATTTCACAGTCATGACATTTCAAGAGGAATTCTAGCCTTAGCATTCCTTCTTGTAGTGTTCAGCTGTTTGAGCAGTTTTCAGATATACTCAATGCCTGCTTTCGACAGTTTTGAAGCCGGCTACACCAGTCGAACAAACCGTCCTTGCTCAATATGGGTTCGGTCAGGTTTTAGAGTTTTCTTTGGATTTGTCTCATTCTTCATAGGAGTGGCACTTCCATTCCTCTCAAGTCTTGCTGGTTTGTTAGGAGGACTCACTCTTCCAGTTACTTTTGCATATCCTTGTTTCATGTGGGTTCTTATTAAACAGCCAACAAAATATAGCTTCAGTTGGTATTTCAATTGGATTCTTGGTTGGTTAGGTGTTGCTTTCAGCTTGGCCTTTTCCATTGGAGGTATTTGGAGTATGGTCAACGATGGACTCAAGTTGAAATTCTTCAAGCCCAATTAA
Protein sequence

>Msa0233570

MSSWWSEISLLGCSQDSDFRSWKFDLGEIYSVSFGIFVPFSGLSWRETNTRMRSILRPKVILVMEERPETELISIPATPRVSTPEILTPSGQRSPRQGSKEAKSSNAWTPTSFISPRFLSPIGTPMKRVLINMKGYLEDVGHLTKLNPQDAWLPITESRNGNAHYSTFHNLNAGVGFQALVLPVAFAYLGWSWGIISLTVAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATALILVGGETMKLFFQIVCGPTCTSNPLTTVEWYLVFTSLSIVLSQLPNLNSIAGLSLIGAVTAITYSTMVWVLSVSQQRPSSISYEPLSLAKPSSSLFLALNALGIIAFSFRGHNLVLEIQATMPSTFKHPARVPMWKGAKVAYFFIAMCLFPMAIGGFWAYGNQMPNGGILTALYAFHSHDISRGILALAFLLVVFSCLSSFQIYSMPAFDSFEAGYTSRTNRPCSIWVRSGFRVFFGFVSFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKQPTKYSFSWYFNWILGWLGVAFSLAFSIGGIWSMVNDGLKLKFFKPN*