AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0276260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0276260 MtrunA17_Chr1g0152861 46.053 152 64 4 46 185 173 318 3.00e-28 110
Msa0276260 MtrunA17_Chr4g0007301 88.372 43 5 0 177 219 26 68 8.11e-20 82.0
Msa0276260 MtrunA17_Chr2g0333531 88.372 43 5 0 177 219 26 68 8.37e-20 82.0
Msa0276260 MtrunA17_Chr1g0179821 56.471 85 24 3 145 229 120 191 8.76e-17 79.0
Msa0276260 MtrunA17_Chr1g0203821 58.209 67 21 2 47 113 198 257 5.78e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 92 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAATGTTTGATTGTATTCT+AGG 0.171441 2_3:-8512584 Msa0276260:three_prime_UTR
TTGTAGTTCTTGGAGGTTTA+TGG 0.186325 2_3:-8512797 Msa0276260:three_prime_UTR
AGATGCAGGGCTGTTGTATT+TGG 0.221313 2_3:+8518995 None:intergenic
GTCAAAATTTACACATTTCT+TGG 0.229453 2_3:+8512659 None:intergenic
TTGACGTTTAGTTCTATAAA+TGG 0.231240 2_3:-8512504 Msa0276260:three_prime_UTR
GACTTGGATTCTTTGGTAAT+TGG 0.240802 2_3:-8512549 Msa0276260:three_prime_UTR
GAATTACCTTCTGCAGAATT+TGG 0.243166 2_3:+8518971 None:intergenic
GGTCACTCTGTTGTAGTTCT+TGG 0.244075 2_3:-8512807 Msa0276260:three_prime_UTR
TTGATTGGACTTGGATTCTT+TGG 0.249753 2_3:-8512556 Msa0276260:three_prime_UTR
CTGACAGTTTCGACACAATT+AGG 0.262315 2_3:-8517873 Msa0276260:intron
GGGAAACAAATCTCATTTAA+AGG 0.291448 2_3:-8514492 Msa0276260:CDS
ACCAAAGTTTCAACTTCTTC+AGG 0.303452 2_3:+8514359 None:intergenic
AAATGCCTTGGAGCTGATTA+TGG 0.312317 2_3:-8515039 Msa0276260:CDS
CTGGAATTTGAAGACATATA+TGG 0.318108 2_3:-8513847 Msa0276260:three_prime_UTR
GAAAGGGTTGGCTTTCTCTA+AGG 0.326027 2_3:-8518345 Msa0276260:intron
GATGCAGGGCTGTTGTATTT+GGG 0.335482 2_3:+8518996 None:intergenic
GAAATTGTTGAGGAGCTTCT+TGG 0.339458 2_3:-8516600 Msa0276260:CDS
AGAACATGAGAAGAACAATA+TGG 0.358822 2_3:-8517958 Msa0276260:five_prime_UTR
TTTCCACCATCTCAGCATAT+TGG 0.372188 2_3:-8513900 Msa0276260:three_prime_UTR
GCGAAATGTCACCATTGTTC+AGG 0.377282 2_3:-8513152 Msa0276260:intron
GTATTTGGGTCACCTTCATA+TGG 0.381405 2_3:+8519010 None:intergenic
CTGCAGAATTTGGCAGATGC+AGG 0.386507 2_3:+8518981 None:intergenic
GAGCATGGAAGGCTTTGAAT+TGG 0.390401 2_3:-8515979 Msa0276260:CDS
GTTGGAATACAAGTTGTTGT+AGG 0.390451 2_3:-8519160 Msa0276260:intron
CACTCTGTTGTAGTTCTTGG+AGG 0.392190 2_3:-8512804 Msa0276260:three_prime_UTR
ATCCGCCTGACCAGCTTATA+CGG 0.398573 2_3:+8519041 None:intergenic
GTATTCTAGGAGAATTTGAT+TGG 0.403456 2_3:-8512571 Msa0276260:three_prime_UTR
TAGGAGAATTTGATTGGACT+TGG 0.411989 2_3:-8512565 Msa0276260:three_prime_UTR
CATTACATTATATTCAAGTA+AGG 0.418443 2_3:-8512627 Msa0276260:three_prime_UTR
TATGAGTGGGTTGTGTTATG+AGG 0.422892 2_3:-8514222 Msa0276260:three_prime_UTR
AAGGGCAACACCATACTCTT+TGG 0.424346 2_3:+8513204 None:intergenic
ATCTTCCTTTGTTGCTGATG+TGG 0.424788 2_3:-8514396 Msa0276260:CDS
ACCTGAAGAAGTTGAAACTT+TGG 0.427515 2_3:-8514360 Msa0276260:three_prime_UTR
AAGTTATTGTCAAGTCAAAT+AGG 0.442406 2_3:-8514448 Msa0276260:CDS
GTTCCAGCTGCAAGTGGTAC+TGG 0.450027 2_3:-8512828 Msa0276260:three_prime_UTR
AGTAGCAGTTAAGTTGTTGT+GGG 0.451554 2_3:-8519274 Msa0276260:five_prime_UTR
ATGGTCCGTATAAGCTGGTC+AGG 0.456036 2_3:-8519046 Msa0276260:five_prime_UTR
AAGTAGCAGTTAAGTTGTTG+TGG 0.463675 2_3:-8519275 Msa0276260:five_prime_UTR
TTTATGATATTGAAATGCCT+TGG 0.464439 2_3:-8515051 Msa0276260:CDS
ACCTGATGAAATCCTCACTT+TGG 0.468216 2_3:-8518396 Msa0276260:five_prime_UTR
AGTAAACTCTGCCACTGAAA+TGG 0.470878 2_3:+8517100 None:intergenic
TCCAAAGTGAGGATTTCATC+AGG 0.470978 2_3:+8518395 None:intergenic
ATCAAACATTACAAATCAAA+GGG 0.474368 2_3:+8512595 None:intergenic
ATGATGATGATAATGATTCA+TGG 0.483461 2_3:-8515245 Msa0276260:CDS
TGAGGGCAACTTACATATCC+AGG 0.488191 2_3:-8514204 Msa0276260:intron
AAACTTTGGTAAAATTTCAA+AGG 0.510648 2_3:-8514346 Msa0276260:intron
GGTACCTAATAGAATTATGC+AGG 0.514795 2_3:+8515188 None:intergenic
AATCAAACATTACAAATCAA+AGG 0.515244 2_3:+8512594 None:intergenic
GACAATTTCAGGATATGTTG+AGG 0.519087 2_3:-8518453 Msa0276260:intron
TACTCTTTGGCAAAACATGT+TGG 0.522651 2_3:+8513217 None:intergenic
GAACATGAGAAGAACAATAT+GGG 0.524942 2_3:-8517957 Msa0276260:five_prime_UTR
GTGGCAGAGTTTACTGCTCC+CGG 0.525626 2_3:-8517092 Msa0276260:intron
GAGTCATTGTATTGTTCTTG+AGG 0.529959 2_3:+8512771 None:intergenic
CTAATAAACAACAATTGAAG+TGG 0.533165 2_3:+8512469 None:intergenic
TGCAGAATTTGGCAGATGCA+GGG 0.537199 2_3:+8518982 None:intergenic
TTTCAGGGATTAAGAATCAA+GGG 0.540034 2_3:-8514512 Msa0276260:intron
CTCTTCCAAAGGTGATAGCA+TGG 0.542728 2_3:-8512751 Msa0276260:three_prime_UTR
AACTGTCAGTTGCGTTTCAG+AGG 0.548651 2_3:+8517887 None:intergenic
TTTGGCAAAACATGTTGGAA+TGG 0.551867 2_3:+8513222 None:intergenic
TTTATTGTGTAGGTATGAAG+AGG 0.552831 2_3:-8516629 Msa0276260:intron
TGACCAGTACCACTTGCAGC+TGG 0.553337 2_3:+8512825 None:intergenic
TTATTGTGTAGGTATGAAGA+GGG 0.556937 2_3:-8516628 Msa0276260:intron
TCATCACCAATATGCTGAGA+TGG 0.559689 2_3:+8513894 None:intergenic
ACAATGGTGACATTTCGCTT+CGG 0.561001 2_3:+8513157 None:intergenic
GAACTCTCCGCGTATGAAGT+CGG 0.562568 2_3:+8512847 None:intergenic
GTAGCATCAGAGAGCATGGA+AGG 0.563587 2_3:-8515990 Msa0276260:intron
TTAGATGCAGCATGTAATTG+AGG 0.564532 2_3:+8516205 None:intergenic
GCAACATTACGTAGTCGTCA+AGG 0.568608 2_3:+8513185 None:intergenic
CAACATTACGTAGTCGTCAA+GGG 0.570337 2_3:+8513186 None:intergenic
AGGCGCTCATCAAGTGTTTG+AGG 0.573893 2_3:-8519370 None:intergenic
ATGAGTGGGTTGTGTTATGA+GGG 0.574980 2_3:-8514221 Msa0276260:three_prime_UTR
GATTTCTACAAATAAGCTTG+AGG 0.582194 2_3:-8515900 Msa0276260:intron
TGAGAAGAACAATATGGGAC+TGG 0.593652 2_3:-8517952 Msa0276260:five_prime_UTR
CATCTGCCAAATTCTGCAGA+AGG 0.595213 2_3:-8518977 Msa0276260:intron
TAATTTGCTAGGACAAGGCA+AGG 0.597697 2_3:-8513248 Msa0276260:intron
TCACCAATATGCTGAGATGG+TGG 0.601205 2_3:+8513897 None:intergenic
AGGTTGCGAGATTATATGAG+TGG 0.605845 2_3:-8514236 Msa0276260:three_prime_UTR
CTTTGGACAATGCTGATCGT+CGG 0.610336 2_3:-8518379 Msa0276260:five_prime_UTR
TGTTGATTCGTCCATTTCAG+TGG 0.613839 2_3:-8517111 Msa0276260:CDS
AGAGTCCACATCAGCAACAA+AGG 0.619740 2_3:+8514391 None:intergenic
GAGGGTTAAAGAAATTGTTG+AGG 0.621800 2_3:-8516610 Msa0276260:CDS
GGATAGCTGAAACCATATGA+AGG 0.625801 2_3:-8519022 Msa0276260:five_prime_UTR
TTTCGCCATAATCAGCTCCA+AGG 0.635005 2_3:+8515034 None:intergenic
CAATACAATGACTCTTCCAA+AGG 0.638042 2_3:-8512762 Msa0276260:three_prime_UTR
CGGAGAGTTCCAGCTGCAAG+TGG 0.640628 2_3:-8512834 Msa0276260:three_prime_UTR
TTATTGACGATAGTTATCTG+TGG 0.643786 2_3:-8515941 Msa0276260:CDS
GTAGCAGTTAAGTTGTTGTG+GGG 0.651574 2_3:-8519273 Msa0276260:five_prime_UTR
GTCCGTATAAGCTGGTCAGG+CGG 0.653266 2_3:-8519043 Msa0276260:five_prime_UTR
AGAAATACCGACTTCATACG+CGG 0.663561 2_3:-8512854 Msa0276260:three_prime_UTR
GATCAGCATTGTCCAAAGTG+AGG 0.674747 2_3:+8518384 None:intergenic
GGTTGCGAGATTATATGAGT+GGG 0.681349 2_3:-8514235 Msa0276260:three_prime_UTR
TAAGAGATTCGACATTCACG+TGG 0.724071 2_3:-8516185 Msa0276260:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAACTCTATAAATTATATT+TGG - chr2_3:8516131-8516150 Msa0276260:intron 10.0%
!!! AACAATAATAGTTTATTTTA+AGG + chr2_3:8516649-8516668 None:intergenic 10.0%
!! AATTTAATTGTTTCAAATTC+TGG - chr2_3:8514077-8514096 Msa0276260:intron 15.0%
!! TTAAACTAAGTAATACTTTA+AGG + chr2_3:8514970-8514989 None:intergenic 15.0%
!!! TTTGATTTTATTTGTTTTTC+AGG - chr2_3:8515316-8515335 Msa0276260:intron 15.0%
!!! ACTAAATATCATTTTAAAAG+GGG + chr2_3:8516016-8516035 None:intergenic 15.0%
!!! GACTAAATATCATTTTAAAA+GGG + chr2_3:8516017-8516036 None:intergenic 15.0%
!!! AATTGGTAAATTTTTATACA+GGG - chr2_3:8516231-8516250 Msa0276260:intron 15.0%
!! TTTAAAAACCATAAGAAATT+TGG + chr2_3:8516425-8516444 None:intergenic 15.0%
!!! TTACTTAATCATACATTTTT+TGG + chr2_3:8516465-8516484 None:intergenic 15.0%
!!! TTTTCAATGTATATTCATTA+TGG - chr2_3:8516521-8516540 Msa0276260:intron 15.0%
!! AATAAAAAAAAATGTAACGT+AGG + chr2_3:8516689-8516708 None:intergenic 15.0%
!!! ATAAAAGAAGACTATTTTTA+GGG + chr2_3:8517824-8517843 None:intergenic 15.0%
!!! AATAAAAGAAGACTATTTTT+AGG + chr2_3:8517825-8517844 None:intergenic 15.0%
!! ATGTGAAAATATACAAAAAT+TGG + chr2_3:8517864-8517883 None:intergenic 15.0%
!! AAAAACAAAGTTATAATGTA+AGG + chr2_3:8518712-8518731 None:intergenic 15.0%
!! TGGTTATTTGTTCTTTATAT+TGG - chr2_3:8512678-8512697 Msa0276260:three_prime_UTR 20.0%
!! ATTATATCTGGAAATTCAAA+CGG + chr2_3:8513171-8513190 None:intergenic 20.0%
!! AGAAATAAAATATGAAAGCT+TGG + chr2_3:8513520-8513539 None:intergenic 20.0%
!! TTTCTCTCATATATAGTTAT+AGG + chr2_3:8513551-8513570 None:intergenic 20.0%
!!! AATCTGTAATTTTGATTCAA+TGG - chr2_3:8513634-8513653 Msa0276260:intron 20.0%
!! TATATATTAAAACTTAAGCG+AGG + chr2_3:8514282-8514301 None:intergenic 20.0%
!! AAGAACAAAAGTAACAATAA+CGG + chr2_3:8514869-8514888 None:intergenic 20.0%
!!! GTTAAAAGAGTTTACTTTTT+AGG + chr2_3:8515135-8515154 None:intergenic 20.0%
!! GAATTAAATCAAACTTTACA+TGG + chr2_3:8515157-8515176 None:intergenic 20.0%
!!! TTAGTGAAATTTTGAAACAA+TGG - chr2_3:8515711-8515730 Msa0276260:intron 20.0%
!!! TAGTGAAATTTTGAAACAAT+GGG - chr2_3:8515712-8515731 Msa0276260:intron 20.0%
!!! GGACTAAATATCATTTTAAA+AGG + chr2_3:8516018-8516037 None:intergenic 20.0%
!! TATGTAAAACTATATGCATT+AGG - chr2_3:8516094-8516113 Msa0276260:intron 20.0%
!!! GAATTGGTAAATTTTTATAC+AGG - chr2_3:8516230-8516249 Msa0276260:intron 20.0%
!!! GTTTGTTGAAATTTCTTTTA+TGG - chr2_3:8516590-8516609 Msa0276260:intron 20.0%
!!! TTTTACCTTTTTCATTTTGA+AGG - chr2_3:8516720-8516739 Msa0276260:intron 20.0%
!!! GAATTTCAAAATTTGTTCAA+TGG + chr2_3:8517146-8517165 None:intergenic 20.0%
!! AAACTTTGGTAAAATTTCAA+AGG - chr2_3:8517467-8517486 Msa0276260:intron 20.0%
!! AAAAATGATGTAAAGAAATC+AGG + chr2_3:8517555-8517574 None:intergenic 20.0%
!!! AATCCTTTTTATCTAACATT+AGG - chr2_3:8518041-8518060 Msa0276260:intron 20.0%
!! AAACCTAATGTTAGATAAAA+AGG + chr2_3:8518047-8518066 None:intergenic 20.0%
!! TTTATCTAACATTAGGTTTA+TGG - chr2_3:8518048-8518067 Msa0276260:intron 20.0%
!!! ATGAAATATATGGATTACTT+AGG + chr2_3:8518262-8518281 None:intergenic 20.0%
!!! TTTTGATAAATTTAAACCGA+TGG + chr2_3:8518400-8518419 None:intergenic 20.0%
!! GGTTTAAATTTATCAAAAGT+TGG - chr2_3:8518402-8518421 Msa0276260:five_prime_UTR 20.0%
!! ATGAAAAATCTGAGAATTAT+AGG - chr2_3:8519097-8519116 Msa0276260:intron 20.0%
!! CATTACATTATATTCAAGTA+AGG - chr2_3:8519186-8519205 Msa0276260:five_prime_UTR 20.0%
!! ATCAAACATTACAAATCAAA+GGG + chr2_3:8519221-8519240 None:intergenic 20.0%
!! AATCAAACATTACAAATCAA+AGG + chr2_3:8519222-8519241 None:intergenic 20.0%
!!! TGAATTGATGTTTTAGTGTT+TGG - chr2_3:8512569-8512588 Msa0276260:three_prime_UTR 25.0%
!!! GAATTGATGTTTTAGTGTTT+GGG - chr2_3:8512570-8512589 Msa0276260:three_prime_UTR 25.0%
! TCAGATGCCAAAATTAAATA+CGG + chr2_3:8512723-8512742 None:intergenic 25.0%
!! GAAATATAAGACATTTTGTG+CGG - chr2_3:8512950-8512969 Msa0276260:intron 25.0%
!! GTGAAAATTTTCAATATGCA+AGG - chr2_3:8513008-8513027 Msa0276260:intron 25.0%
!!! ATTTTCTTCTCATACTGATT+TGG + chr2_3:8513708-8513727 None:intergenic 25.0%
! AGTATGAGAAGAAAATGATA+TGG - chr2_3:8513712-8513731 Msa0276260:intron 25.0%
! ACTATGATGTACTAATTAGT+TGG + chr2_3:8513741-8513760 None:intergenic 25.0%
!!! TCATTTGTTGATTCAAATTC+TGG - chr2_3:8514027-8514046 Msa0276260:intron 25.0%
!! TTTTTAACGAATAAGTTACC+TGG - chr2_3:8514198-8514217 Msa0276260:intron 25.0%
!! TAACTTGTAAATCTTCAAGA+GGG + chr2_3:8514358-8514377 None:intergenic 25.0%
!! ATAACTTGTAAATCTTCAAG+AGG + chr2_3:8514359-8514378 None:intergenic 25.0%
!! GTAAAGAAAGCACATATTTA+TGG + chr2_3:8514489-8514508 None:intergenic 25.0%
!!! TATGGTTTGAGATTTTTCTT+GGG - chr2_3:8514766-8514785 Msa0276260:intron 25.0%
!! AAGTCTAACAATATCTTTTC+AGG - chr2_3:8514797-8514816 Msa0276260:intron 25.0%
!!! AGAAAATCAATCATTTTTGC+AGG + chr2_3:8514828-8514847 None:intergenic 25.0%
!!! GTTTACTTTTTAGGTTGAAA+TGG + chr2_3:8515126-8515145 None:intergenic 25.0%
!! TTCTGTGATTTTTATTGTGT+AGG - chr2_3:8515174-8515193 Msa0276260:intron 25.0%
! TTCAATGTAAAGCAAAACAA+TGG + chr2_3:8515289-8515308 None:intergenic 25.0%
!!! TTTGTTTTTCAGGTTTATGA+AGG - chr2_3:8515326-8515345 Msa0276260:intron 25.0%
! TAAGAACCCTCTTTAATAAA+GGG + chr2_3:8515366-8515385 None:intergenic 25.0%
! GTTCTCATGATATTCATAAA+TGG - chr2_3:8515462-8515481 Msa0276260:intron 25.0%
!! GAAGTATTATGTATGTTCTT+TGG - chr2_3:8515743-8515762 Msa0276260:intron 25.0%
! AAAATTGAGATTGACATTCT+AGG + chr2_3:8515951-8515970 None:intergenic 25.0%
! TAACCTTTCCAAATTTCTTA+TGG - chr2_3:8516414-8516433 Msa0276260:intron 25.0%
! AAACCATAAGAAATTTGGAA+AGG + chr2_3:8516420-8516439 None:intergenic 25.0%
!! ATGATGATGATAATGATTCA+TGG - chr2_3:8516568-8516587 Msa0276260:intron 25.0%
!! TTTTCCTGCATAATTCTATT+AGG - chr2_3:8516621-8516640 Msa0276260:intron 25.0%
! AAAGTCCTTCAAAATGAAAA+AGG + chr2_3:8516728-8516747 None:intergenic 25.0%
! TTTATGATATTGAAATGCCT+TGG - chr2_3:8516762-8516781 Msa0276260:intron 25.0%
! CTATGTATTATGTGCATAAA+AGG - chr2_3:8516971-8516990 Msa0276260:intron 25.0%
! AGATATACACCTATGTATTT+AGG - chr2_3:8517096-8517115 Msa0276260:CDS 25.0%
!!! GAACAAATTTTGAAATTCAG+TGG - chr2_3:8517148-8517167 Msa0276260:CDS 25.0%
!! TTCATGATTATTTTCACTCA+TGG + chr2_3:8517347-8517366 None:intergenic 25.0%
! AAGTTATTGTCAAGTCAAAT+AGG - chr2_3:8517365-8517384 Msa0276260:intron 25.0%
! GATATTTATGAGTTTAGATG+TGG - chr2_3:8517491-8517510 Msa0276260:intron 25.0%
! TAAAGAAATCAGGAAAATGA+AGG + chr2_3:8517545-8517564 None:intergenic 25.0%
!!! TTTCTTTACATCATTTTTGC+AGG - chr2_3:8517557-8517576 Msa0276260:intron 25.0%
! AAAAATAATAGAAGCTAACC+TGG + chr2_3:8517630-8517649 None:intergenic 25.0%
!!! GGTTAGCTTCTATTATTTTT+TGG - chr2_3:8517630-8517649 Msa0276260:intron 25.0%
! ATCATCTACAAAGAAACAAA+AGG + chr2_3:8517668-8517687 None:intergenic 25.0%
!! TGCCTCTTTAATGATTTTAA+TGG - chr2_3:8517696-8517715 Msa0276260:intron 25.0%
! CACCATTAAAATCATTAAAG+AGG + chr2_3:8517701-8517720 None:intergenic 25.0%
! ATGTTAGATAAAAAGGATTG+AGG + chr2_3:8518040-8518059 None:intergenic 25.0%
! ACTATATGTAAAAATAACCC+TGG + chr2_3:8518339-8518358 None:intergenic 25.0%
! AAAGCTATGAAACTGTTATA+AGG + chr2_3:8518428-8518447 None:intergenic 25.0%
! ATGAACAATGAGTGATAAAT+TGG + chr2_3:8518481-8518500 None:intergenic 25.0%
! TTAGCAGTGAAAATATAGTT+TGG + chr2_3:8518517-8518536 None:intergenic 25.0%
!!! ACATTATTTGCTAATTTGCT+AGG - chr2_3:8518554-8518573 Msa0276260:intron 25.0%
! AATAAGAGAAACTGTGAAAT+TGG + chr2_3:8518833-8518852 None:intergenic 25.0%
! AAGGAAAATATCGATAAGTA+AGG - chr2_3:8518856-8518875 Msa0276260:intron 25.0%
!! ATGAATTTTACATCATGCTT+TGG - chr2_3:8518888-8518907 Msa0276260:intron 25.0%
! GTCAAAATTTACACATTTCT+TGG + chr2_3:8519157-8519176 None:intergenic 25.0%
! GTAATGTTTGATTGTATTCT+AGG - chr2_3:8519229-8519248 Msa0276260:five_prime_UTR 25.0%
!!! TTGACGTTTAGTTCTATAAA+TGG - chr2_3:8519309-8519328 Msa0276260:five_prime_UTR 25.0%
! CTAATAAACAACAATTGAAG+TGG + chr2_3:8519347-8519366 None:intergenic 25.0%
AATACAAGTTGTTGTAGGTA+TGG - chr2_3:8512658-8512677 Msa0276260:three_prime_UTR 30.0%
TCTAATCCAGAACTTGTAAA+GGG + chr2_3:8512880-8512899 None:intergenic 30.0%
TTCTAATCCAGAACTTGTAA+AGG + chr2_3:8512881-8512900 None:intergenic 30.0%
!! TTTACAAGTTCTGGATTAGA+AGG - chr2_3:8512880-8512899 Msa0276260:intron 30.0%
GATTAGAAGGATATCTCTAA+TGG - chr2_3:8512893-8512912 Msa0276260:intron 30.0%
TGATGTACTAATTATGCATC+AGG - chr2_3:8513041-8513060 Msa0276260:intron 30.0%
CTTAAGCGCTTAATTATATC+TGG + chr2_3:8513183-8513202 None:intergenic 30.0%
TGAAGCAAAGTTACAGAAAA+AGG + chr2_3:8513276-8513295 None:intergenic 30.0%
TGTGTGAATTTGACAATTTC+AGG - chr2_3:8513349-8513368 Msa0276260:intron 30.0%
ACAGATTATGATGCTAAGTA+GGG + chr2_3:8513621-8513640 None:intergenic 30.0%
TACAGATTATGATGCTAAGT+AGG + chr2_3:8513622-8513641 None:intergenic 30.0%
ACTGAAACTTCAATAAATGC+AGG + chr2_3:8513666-8513685 None:intergenic 30.0%
AGAACATGAGAAGAACAATA+TGG - chr2_3:8513855-8513874 Msa0276260:three_prime_UTR 30.0%
GAACATGAGAAGAACAATAT+GGG - chr2_3:8513856-8513875 Msa0276260:three_prime_UTR 30.0%
!! ATTTTAGTGACTGTCAACTA+TGG - chr2_3:8513888-8513907 Msa0276260:three_prime_UTR 30.0%
!! AAGTTACCTGGTTTTCATTT+TGG - chr2_3:8514210-8514229 Msa0276260:three_prime_UTR 30.0%
TTTCAACCAAAATGAAAACC+AGG + chr2_3:8514219-8514238 None:intergenic 30.0%
GGTTGAAAATATATGTGCAA+TGG - chr2_3:8514231-8514250 Msa0276260:three_prime_UTR 30.0%
TGGAACATAAAGTCAGAATT+TGG + chr2_3:8514335-8514354 None:intergenic 30.0%
! TGACATTCAATTGATTCTCT+TGG - chr2_3:8514389-8514408 Msa0276260:CDS 30.0%
! AAGCCTTTTCATTATCAGTA+TGG - chr2_3:8514556-8514575 Msa0276260:intron 30.0%
! TGTCCATACTGATAATGAAA+AGG + chr2_3:8514562-8514581 None:intergenic 30.0%
!!! ATGGTCATTTTTTGTTGATG+TGG - chr2_3:8514588-8514607 Msa0276260:intron 30.0%
!! GATTAGTTCTGATTGCTTTA+GGG - chr2_3:8514610-8514629 Msa0276260:intron 30.0%
CAAGAAAAATCTCAAACCAT+AGG + chr2_3:8514767-8514786 None:intergenic 30.0%
!! CTATGGTTTGAGATTTTTCT+TGG - chr2_3:8514765-8514784 Msa0276260:intron 30.0%
!! ATGGTTTGAGATTTTTCTTG+GGG - chr2_3:8514767-8514786 Msa0276260:intron 30.0%
TTTATTGTGTAGGTATGAAG+AGG - chr2_3:8515184-8515203 Msa0276260:intron 30.0%
TTATTGTGTAGGTATGAAGA+GGG - chr2_3:8515185-8515204 Msa0276260:intron 30.0%
TTATGAAGGAAACCAAATGT+TGG - chr2_3:8515340-8515359 Msa0276260:intron 30.0%
TTTAATAAAGGGCCAACATT+TGG + chr2_3:8515355-8515374 None:intergenic 30.0%
GTAAGAACCCTCTTTAATAA+AGG + chr2_3:8515367-8515386 None:intergenic 30.0%
! CAAATGATAATGAACGTGTT+AGG + chr2_3:8515567-8515586 None:intergenic 30.0%
ACACGTTCATTATCATTTGT+AGG - chr2_3:8515568-8515587 Msa0276260:intron 30.0%
!! TATCGTCTCGATATTTTTGT+GGG - chr2_3:8515659-8515678 Msa0276260:intron 30.0%
!! ATATTTTTGTGGGGGAATAA+GGG - chr2_3:8515669-8515688 Msa0276260:intron 30.0%
! GAGGTATTATGTATGATCTT+AGG - chr2_3:8515774-8515793 Msa0276260:intron 30.0%
TATGTATGATCTTAGGATGA+TGG - chr2_3:8515781-8515800 Msa0276260:intron 30.0%
TTATTGACGATAGTTATCTG+TGG - chr2_3:8515872-8515891 Msa0276260:intron 30.0%
GATTTCTACAAATAAGCTTG+AGG - chr2_3:8515913-8515932 Msa0276260:CDS 30.0%
! TTACATGTCCTCCTTTTATA+TGG - chr2_3:8515985-8516004 Msa0276260:CDS 30.0%
AATGATATTTAGTCCTGTTC+TGG - chr2_3:8516023-8516042 Msa0276260:intron 30.0%
ATGATATTTAGTCCTGTTCT+GGG - chr2_3:8516024-8516043 Msa0276260:intron 30.0%
GTAAAACTATATGCATTAGG+TGG - chr2_3:8516097-8516116 Msa0276260:intron 30.0%
CATAATCTAGCTACAGAATA+TGG + chr2_3:8516167-8516186 None:intergenic 30.0%
TCTGTAGCTAGATTATGAAT+TGG - chr2_3:8516170-8516189 Msa0276260:intron 30.0%
! ATGACTGAAGTATTACAAGT+TGG - chr2_3:8516198-8516217 Msa0276260:CDS 30.0%
!! AAGTTGGTCTTATGATGAAT+TGG - chr2_3:8516214-8516233 Msa0276260:CDS 30.0%
!! TCGTTTCTAGCTATCAATAA+GGG + chr2_3:8516376-8516395 None:intergenic 30.0%
GTTCCTATGAATTGATTACA+GGG - chr2_3:8516543-8516562 Msa0276260:intron 30.0%
TTTCCCTGTAATCAATTCAT+AGG + chr2_3:8516549-8516568 None:intergenic 30.0%
! AACTGAAGCATTATAAAGAG+AGG - chr2_3:8516836-8516855 Msa0276260:intron 30.0%
TTATTTAGTGGGATTGAAAG+TGG + chr2_3:8516906-8516925 None:intergenic 30.0%
CATGGTTTCACTTATTTAGT+GGG + chr2_3:8516917-8516936 None:intergenic 30.0%
CACTAAATAAGTGAAACCAT+GGG - chr2_3:8516916-8516935 Msa0276260:intron 30.0%
! GCATTTTCTGTCAAATTTGA+GGG - chr2_3:8516993-8517012 Msa0276260:intron 30.0%
ATACACCTATGTATTTAGGT+AGG - chr2_3:8517100-8517119 Msa0276260:CDS 30.0%
!!! GAGTTTTTTTTCTTGGTGTA+AGG + chr2_3:8517203-8517222 None:intergenic 30.0%
TACACCAAGAAAAAAAACTC+AGG - chr2_3:8517203-8517222 Msa0276260:intron 30.0%
!!! CAAACCTGAGTTTTTTTTCT+TGG + chr2_3:8517210-8517229 None:intergenic 30.0%
AAAACTCAGGTTTGTATTGA+AGG - chr2_3:8517216-8517235 Msa0276260:intron 30.0%
AAACTCAGGTTTGTATTGAA+GGG - chr2_3:8517217-8517236 Msa0276260:intron 30.0%
! TGATCTCTTGCAAATTTTCA+GGG - chr2_3:8517286-8517305 Msa0276260:intron 30.0%
!! TTTTCAGGGATTAAGAATCA+AGG - chr2_3:8517300-8517319 Msa0276260:intron 30.0%
TTTCAGGGATTAAGAATCAA+GGG - chr2_3:8517301-8517320 Msa0276260:intron 30.0%
GGGAAACAAATCTCATTTAA+AGG - chr2_3:8517321-8517340 Msa0276260:intron 30.0%
GTTTCTTTGTAGATGATCTT+AGG - chr2_3:8517671-8517690 Msa0276260:intron 30.0%
AAGAACCAGCATATTGTAAA+CGG + chr2_3:8517765-8517784 None:intergenic 30.0%
!! TGATATTGCTTTTGTTGGAA+AGG - chr2_3:8517939-8517958 Msa0276260:five_prime_UTR 30.0%
CTGGAATTTGAAGACATATA+TGG - chr2_3:8517966-8517985 Msa0276260:intron 30.0%
AATCCATATATTTCATCCAG+TGG - chr2_3:8518266-8518285 Msa0276260:intron 30.0%
!! TTTCTTTTTAGTATGCTCCA+GGG - chr2_3:8518319-8518338 Msa0276260:intron 30.0%
!! TTCAGGTTGAAAAGAAGAAT+GGG - chr2_3:8518678-8518697 Msa0276260:intron 30.0%
!! GTGTAAATTTTGACGTCAAA+TGG - chr2_3:8519163-8519182 Msa0276260:five_prime_UTR 30.0%
! GTATTCTAGGAGAATTTGAT+TGG - chr2_3:8519242-8519261 Msa0276260:five_prime_UTR 30.0%
! AAGTAGCAGTTAAGTTGTTG+TGG - chr2_3:8512538-8512557 Msa0276260:three_prime_UTR 35.0%
! AGTAGCAGTTAAGTTGTTGT+GGG - chr2_3:8512539-8512558 Msa0276260:three_prime_UTR 35.0%
! TGTTTTGCAGAAGCTTAAGT+TGG - chr2_3:8512635-8512654 Msa0276260:three_prime_UTR 35.0%
GTTGGAATACAAGTTGTTGT+AGG - chr2_3:8512653-8512672 Msa0276260:three_prime_UTR 35.0%
! TTTTTATGGTCCGTATAAGC+TGG - chr2_3:8512762-8512781 Msa0276260:three_prime_UTR 35.0%
GAATTACCTTCTGCAGAATT+TGG + chr2_3:8512845-8512864 None:intergenic 35.0%
AGAAGGATATCTCTAATGGA+TGG - chr2_3:8512897-8512916 Msa0276260:intron 35.0%
! TTTTGTGCGGTTTGAATTTC+AGG - chr2_3:8512963-8512982 Msa0276260:intron 35.0%
TCCAAAAAGAAAGTCTGGAA+CGG + chr2_3:8513249-8513268 None:intergenic 35.0%
GTTCTTCCAAAAAGAAAGTC+TGG + chr2_3:8513254-8513273 None:intergenic 35.0%
CTGAAAAGAAAACAGACACA+GGG - chr2_3:8513298-8513317 Msa0276260:intron 35.0%
TGAAAAGAAAACAGACACAG+GGG - chr2_3:8513299-8513318 Msa0276260:intron 35.0%
GACAATTTCAGGATATGTTG+AGG - chr2_3:8513360-8513379 Msa0276260:intron 35.0%
TGTTCCTCTCATATGTTGAA+CGG + chr2_3:8513794-8513813 None:intergenic 35.0%
ACGCTGTTAAATTGTTGAAG+GGG + chr2_3:8514144-8514163 None:intergenic 35.0%
CACGCTGTTAAATTGTTGAA+GGG + chr2_3:8514145-8514164 None:intergenic 35.0%
GACTTAAGAATTACCTCAGT+TGG + chr2_3:8514446-8514465 None:intergenic 35.0%
GCTTTCTTTACAACTCTACT+TGG - chr2_3:8514498-8514517 Msa0276260:CDS 35.0%
TACAACTCTACTTGGTAAAG+AGG - chr2_3:8514506-8514525 Msa0276260:CDS 35.0%
ATCAGTATGGACAACATCAA+TGG - chr2_3:8514569-8514588 Msa0276260:intron 35.0%
!! GGATTAGTTCTGATTGCTTT+AGG - chr2_3:8514609-8514628 Msa0276260:intron 35.0%
!! CTTTAGGGATGCTTTCATTT+TGG - chr2_3:8514625-8514644 Msa0276260:CDS 35.0%
! GCAATTTTTGACACAATGCA+GGG - chr2_3:8514647-8514666 Msa0276260:intron 35.0%
TCTGTCAATTCAACAACCTA+TGG - chr2_3:8514748-8514767 Msa0276260:intron 35.0%
CCTGTTTACAACTCATTCTA+GGG - chr2_3:8515089-8515108 Msa0276260:intron 35.0%
GAGGGTTAAAGAAATTGTTG+AGG - chr2_3:8515203-8515222 Msa0276260:CDS 35.0%
ATGTTGGCCCTTTATTAAAG+AGG - chr2_3:8515356-8515375 Msa0276260:intron 35.0%
TGTTGGCCCTTTATTAAAGA+GGG - chr2_3:8515357-8515376 Msa0276260:intron 35.0%
CGTTCATTATCATTTGTAGG+CGG - chr2_3:8515571-8515590 Msa0276260:intron 35.0%
TTAGATGCAGCATGTAATTG+AGG + chr2_3:8515611-8515630 None:intergenic 35.0%
!! CTATCGTCTCGATATTTTTG+TGG - chr2_3:8515658-8515677 Msa0276260:intron 35.0%
!! ATCGTCTCGATATTTTTGTG+GGG - chr2_3:8515660-8515679 Msa0276260:intron 35.0%
!! GATATTTTTGTGGGGGAATA+AGG - chr2_3:8515668-8515687 Msa0276260:intron 35.0%
AAGGGGATCAACCATATAAA+AGG + chr2_3:8515999-8516018 None:intergenic 35.0%
! TTTTTATACAGGGTTCTCAG+TGG - chr2_3:8516241-8516260 Msa0276260:intron 35.0%
!! GTCGTTTCTAGCTATCAATA+AGG + chr2_3:8516377-8516396 None:intergenic 35.0%
! ATTGATAGCTAGAAACGACT+TGG - chr2_3:8516378-8516397 Msa0276260:intron 35.0%
GGTTCCTATGAATTGATTAC+AGG - chr2_3:8516542-8516561 Msa0276260:intron 35.0%
GGTACCTAATAGAATTATGC+AGG + chr2_3:8516628-8516647 None:intergenic 35.0%
ATAGCTGGTCATACTAACTA+TGG + chr2_3:8516862-8516881 None:intergenic 35.0%
CCATGGTTTCACTTATTTAG+TGG + chr2_3:8516918-8516937 None:intergenic 35.0%
CCACTAAATAAGTGAAACCA+TGG - chr2_3:8516915-8516934 Msa0276260:intron 35.0%
TCACATTCAAAATTGTCCCA+TGG + chr2_3:8516935-8516954 None:intergenic 35.0%
! GGCATTTTCTGTCAAATTTG+AGG - chr2_3:8516992-8517011 Msa0276260:intron 35.0%
GCATTCCTACCTAAATACAT+AGG + chr2_3:8517108-8517127 None:intergenic 35.0%
! TCAGTGGTTATGTATTTTGC+AGG - chr2_3:8517164-8517183 Msa0276260:intron 35.0%
! GTGATCTCTTGCAAATTTTC+AGG - chr2_3:8517285-8517304 Msa0276260:intron 35.0%
ACCTGAAGAAGTTGAAACTT+TGG - chr2_3:8517453-8517472 Msa0276260:intron 35.0%
ACCAAAGTTTCAACTTCTTC+AGG + chr2_3:8517457-8517476 None:intergenic 35.0%
GGTTGTAAAATGTCTTGCTT+TGG - chr2_3:8517512-8517531 Msa0276260:intron 35.0%
ATATTGTAAACGGAATGAGC+TGG + chr2_3:8517755-8517774 None:intergenic 35.0%
TCATTCCGTTTACAATATGC+TGG - chr2_3:8517757-8517776 Msa0276260:intron 35.0%
!! GGTGATGATATTGCTTTTGT+TGG - chr2_3:8517934-8517953 Msa0276260:five_prime_UTR 35.0%
! GGTTGAATTTGAAATCGCAT+TGG - chr2_3:8518069-8518088 Msa0276260:intron 35.0%
ATGTGTGTCATATGTGTGTT+TGG - chr2_3:8518176-8518195 Msa0276260:intron 35.0%
TGTCCACTGGATGAAATATA+TGG + chr2_3:8518272-8518291 None:intergenic 35.0%
TATTTCATCCAGTGGACATT+TGG - chr2_3:8518274-8518293 Msa0276260:intron 35.0%
!! GTTTCTTTTTAGTATGCTCC+AGG - chr2_3:8518318-8518337 Msa0276260:intron 35.0%
! CAAAGTGTTTACCTATAAGC+AGG + chr2_3:8518369-8518388 None:intergenic 35.0%
ACACTTTGTATAGACACCAT+CGG - chr2_3:8518381-8518400 Msa0276260:five_prime_UTR 35.0%
GATAAATTGGATTACTGCCT+TGG + chr2_3:8518468-8518487 None:intergenic 35.0%
!! TTTGCTAATTTGCTAGGACA+AGG - chr2_3:8518560-8518579 Msa0276260:intron 35.0%
TTTGGCAAAACATGTTGGAA+TGG + chr2_3:8518594-8518613 None:intergenic 35.0%
TACTCTTTGGCAAAACATGT+TGG + chr2_3:8518599-8518618 None:intergenic 35.0%
! ACATGTTTTGCCAAAGAGTA+TGG - chr2_3:8518599-8518618 Msa0276260:intron 35.0%
! CTTCTTTTCAACCTGAACAA+TGG + chr2_3:8518675-8518694 None:intergenic 35.0%
!! GTTCAGGTTGAAAAGAAGAA+TGG - chr2_3:8518677-8518696 Msa0276260:intron 35.0%
TCCTCTCATCACAATGATAT+TGG + chr2_3:8518736-8518755 None:intergenic 35.0%
GTGATGAGAGGAAAAAAACT+CGG - chr2_3:8518744-8518763 Msa0276260:intron 35.0%
CACAGTTTCTCTTATTGTGA+AGG - chr2_3:8518837-8518856 Msa0276260:intron 35.0%
TTGTAGTTCTTGGAGGTTTA+TGG - chr2_3:8519016-8519035 Msa0276260:five_prime_UTR 35.0%
GAGTCATTGTATTGTTCTTG+AGG + chr2_3:8519045-8519064 None:intergenic 35.0%
CAATACAATGACTCTTCCAA+AGG - chr2_3:8519051-8519070 Msa0276260:five_prime_UTR 35.0%
TAGGAGAATTTGATTGGACT+TGG - chr2_3:8519248-8519267 Msa0276260:five_prime_UTR 35.0%
TTGATTGGACTTGGATTCTT+TGG - chr2_3:8519257-8519276 Msa0276260:five_prime_UTR 35.0%
! GACTTGGATTCTTTGGTAAT+TGG - chr2_3:8519264-8519283 Msa0276260:five_prime_UTR 35.0%
! GTAGCAGTTAAGTTGTTGTG+GGG - chr2_3:8512540-8512559 Msa0276260:three_prime_UTR 40.0%
! TTGGAGTTTTTGTCTTGCTG+CGG - chr2_3:8512697-8512716 Msa0276260:three_prime_UTR 40.0%
! AAGCTTGCCAAGCGTTTTTA+TGG - chr2_3:8512748-8512767 Msa0276260:three_prime_UTR 40.0%
ATACGGACCATAAAAACGCT+TGG + chr2_3:8512758-8512777 None:intergenic 40.0%
GGATAGCTGAAACCATATGA+AGG - chr2_3:8512791-8512810 Msa0276260:three_prime_UTR 40.0%
GTATTTGGGTCACCTTCATA+TGG + chr2_3:8512806-8512825 None:intergenic 40.0%
GATTCACCCTTTACAAGTTC+TGG - chr2_3:8512871-8512890 Msa0276260:intron 40.0%
TCCAAGCACTTGGAATTAGT+AGG - chr2_3:8513136-8513155 Msa0276260:intron 40.0%
! TCCGTTCCAGACTTTCTTTT+TGG - chr2_3:8513245-8513264 Msa0276260:intron 40.0%
! CCTGTGTCTGTTTTCTTTTC+AGG + chr2_3:8513300-8513319 None:intergenic 40.0%
CCTGAAAAGAAAACAGACAC+AGG - chr2_3:8513297-8513316 Msa0276260:intron 40.0%
ACACACAACACAGCAATTAC+GGG + chr2_3:8513334-8513353 None:intergenic 40.0%
CACACACAACACAGCAATTA+CGG + chr2_3:8513335-8513354 None:intergenic 40.0%
ACCTGATGAAATCCTCACTT+TGG - chr2_3:8513417-8513436 Msa0276260:intron 40.0%
TCCAAAGTGAGGATTTCATC+AGG + chr2_3:8513421-8513440 None:intergenic 40.0%
GTCGGTGTAAAAAGCTGAAA+GGG - chr2_3:8513452-8513471 Msa0276260:intron 40.0%
GTGTAAAAAGCTGAAAGGGT+TGG - chr2_3:8513456-8513475 Msa0276260:intron 40.0%
GCTAAGTAGGGATAGAGATT+GGG + chr2_3:8513609-8513628 None:intergenic 40.0%
TGCTAAGTAGGGATAGAGAT+TGG + chr2_3:8513610-8513629 None:intergenic 40.0%
CTCTCATATGTTGAACGGAA+TGG + chr2_3:8513789-8513808 None:intergenic 40.0%
CATTCCGTTCAACATATGAG+AGG - chr2_3:8513787-8513806 Msa0276260:intron 40.0%
TGAGAAGAACAATATGGGAC+TGG - chr2_3:8513861-8513880 Msa0276260:three_prime_UTR 40.0%
CTGACAGTTTCGACACAATT+AGG - chr2_3:8513940-8513959 Msa0276260:three_prime_UTR 40.0%
TGGACTATACTTTGAGCACA+AGG - chr2_3:8514097-8514116 Msa0276260:intron 40.0%
ATACTTTGAGCACAAGGTTG+TGG - chr2_3:8514103-8514122 Msa0276260:intron 40.0%
GCACGCTGTTAAATTGTTGA+AGG + chr2_3:8514146-8514165 None:intergenic 40.0%
CTTGTAAATCTTCAAGAGGG+TGG + chr2_3:8514355-8514374 None:intergenic 40.0%
! AGATTGTTCTGAACCAACTG+AGG - chr2_3:8514430-8514449 Msa0276260:CDS 40.0%
TAAAGAGGTCAATCCGAAGT+TGG - chr2_3:8514521-8514540 Msa0276260:intron 40.0%
! GGCAATTTTTGACACAATGC+AGG - chr2_3:8514646-8514665 Msa0276260:intron 40.0%
!! TGTTGATTCGTCCATTTCAG+TGG - chr2_3:8514702-8514721 Msa0276260:intron 40.0%
AGTAAACTCTGCCACTGAAA+TGG + chr2_3:8514716-8514735 None:intergenic 40.0%
TGTTGAATTGACAGACTCAC+CGG + chr2_3:8514743-8514762 None:intergenic 40.0%
GAATGAGTTGTAAACAGGCA+TGG + chr2_3:8515087-8515106 None:intergenic 40.0%
GCCTGTTTACAACTCATTCT+AGG - chr2_3:8515088-8515107 Msa0276260:intron 40.0%
CCCTAGAATGAGTTGTAAAC+AGG + chr2_3:8515092-8515111 None:intergenic 40.0%
GAAATTGTTGAGGAGCTTCT+TGG - chr2_3:8515213-8515232 Msa0276260:CDS 40.0%
TTCAGCGCAAAACTTCAGTT+TGG + chr2_3:8515518-8515537 None:intergenic 40.0%
TAAGAGATTCGACATTCACG+TGG - chr2_3:8515628-8515647 Msa0276260:intron 40.0%
!! TCGTCTCGATATTTTTGTGG+GGG - chr2_3:8515661-8515680 Msa0276260:intron 40.0%
! ATGTTCTTTGGAAACAGCTG+AGG - chr2_3:8515755-8515774 Msa0276260:intron 40.0%
! TTTTGTAGCATCAGAGAGCA+TGG - chr2_3:8515819-8515838 Msa0276260:intron 40.0%
GGGATCAACCATATAAAAGG+AGG + chr2_3:8515996-8516015 None:intergenic 40.0%
! CTATCAATAAGGGCATGGTT+TGG + chr2_3:8516366-8516385 None:intergenic 40.0%
TCTAGCTATCAATAAGGGCA+TGG + chr2_3:8516371-8516390 None:intergenic 40.0%
AAATGCCTTGGAGCTGATTA+TGG - chr2_3:8516774-8516793 Msa0276260:intron 40.0%
ATCTTCCTTTGTTGCTGATG+TGG - chr2_3:8517417-8517436 Msa0276260:intron 40.0%
AGGTTGCGAGATTATATGAG+TGG - chr2_3:8517577-8517596 Msa0276260:intron 40.0%
GGTTGCGAGATTATATGAGT+GGG - chr2_3:8517578-8517597 Msa0276260:intron 40.0%
!! TATGAGTGGGTTGTGTTATG+AGG - chr2_3:8517591-8517610 Msa0276260:intron 40.0%
!! ATGAGTGGGTTGTGTTATGA+GGG - chr2_3:8517592-8517611 Msa0276260:intron 40.0%
TTTCCACCATCTCAGCATAT+TGG - chr2_3:8517913-8517932 Msa0276260:exon 40.0%
TCATCACCAATATGCTGAGA+TGG + chr2_3:8517922-8517941 None:intergenic 40.0%
! CTTTTGTTGGAAAGGACATC+TGG - chr2_3:8517947-8517966 Msa0276260:five_prime_UTR 40.0%
AAAAGGATTGAGGTTCTCAG+TGG + chr2_3:8518030-8518049 None:intergenic 40.0%
AATTGCAACCAAATGTCCAC+TGG + chr2_3:8518285-8518304 None:intergenic 40.0%
TAGTTTCATCGCCTGCTTAT+AGG - chr2_3:8518355-8518374 Msa0276260:five_prime_UTR 40.0%
! CATAGCTTTGCTTTGTATGC+TGG - chr2_3:8518439-8518458 Msa0276260:five_prime_UTR 40.0%
!! TAATTTGCTAGGACAAGGCA+AGG - chr2_3:8518565-8518584 Msa0276260:intron 40.0%
CAACATTACGTAGTCGTCAA+GGG + chr2_3:8518630-8518649 None:intergenic 40.0%
ACAATGGTGACATTTCGCTT+CGG + chr2_3:8518659-8518678 None:intergenic 40.0%
GCCAATATCATTGTGATGAG+AGG - chr2_3:8518732-8518751 Msa0276260:intron 40.0%
!! AGAAATACCGACTTCATACG+CGG - chr2_3:8518959-8518978 Msa0276260:intron 40.0%
! GTTTTCCATGCTATCACCTT+TGG + chr2_3:8519070-8519089 None:intergenic 40.0%
!! GCTGCGGCCGTATTTAATTT+TGG - chr2_3:8512713-8512732 Msa0276260:three_prime_UTR 45.0%
AAAAACGCTTGGCAAGCTTC+TGG + chr2_3:8512747-8512766 None:intergenic 45.0%
GATGCAGGGCTGTTGTATTT+GGG + chr2_3:8512820-8512839 None:intergenic 45.0%
AGATGCAGGGCTGTTGTATT+TGG + chr2_3:8512821-8512840 None:intergenic 45.0%
TGCAGAATTTGGCAGATGCA+GGG + chr2_3:8512834-8512853 None:intergenic 45.0%
CATCTGCCAAATTCTGCAGA+AGG - chr2_3:8512836-8512855 Msa0276260:three_prime_UTR 45.0%
GTTTGCAACTTCCAAGCACT+TGG - chr2_3:8513126-8513145 Msa0276260:intron 45.0%
GCCTACTAATTCCAAGTGCT+TGG + chr2_3:8513140-8513159 None:intergenic 45.0%
GATCAGCATTGTCCAAAGTG+AGG + chr2_3:8513432-8513451 None:intergenic 45.0%
CTTTGGACAATGCTGATCGT+CGG - chr2_3:8513434-8513453 Msa0276260:intron 45.0%
CGTCGGTGTAAAAAGCTGAA+AGG - chr2_3:8513451-8513470 Msa0276260:intron 45.0%
!! GAAAGGGTTGGCTTTCTCTA+AGG - chr2_3:8513468-8513487 Msa0276260:intron 45.0%
AACTGTCAGTTGCGTTTCAG+AGG + chr2_3:8513929-8513948 None:intergenic 45.0%
TTCTCAGTAGCTGCCAACTT+CGG + chr2_3:8514537-8514556 None:intergenic 45.0%
GTTGAATTGACAGACTCACC+GGG + chr2_3:8514742-8514761 None:intergenic 45.0%
!! GAGCATGGAAGGCTTTGAAT+TGG - chr2_3:8515834-8515853 Msa0276260:intron 45.0%
AAATGACATGCACACACTGC+GGG + chr2_3:8516070-8516089 None:intergenic 45.0%
CAAATGACATGCACACACTG+CGG + chr2_3:8516071-8516090 None:intergenic 45.0%
TTTCGCCATAATCAGCTCCA+AGG + chr2_3:8516782-8516801 None:intergenic 45.0%
AGAGTCCACATCAGCAACAA+AGG + chr2_3:8517425-8517444 None:intergenic 45.0%
TGAGGGCAACTTACATATCC+AGG - chr2_3:8517609-8517628 Msa0276260:intron 45.0%
TCACCAATATGCTGAGATGG+TGG + chr2_3:8517919-8517938 None:intergenic 45.0%
GCTTTGTATGCTGGATACCA+AGG - chr2_3:8518448-8518467 Msa0276260:intron 45.0%
AAGGGCAACACCATACTCTT+TGG + chr2_3:8518612-8518631 None:intergenic 45.0%
GCAACATTACGTAGTCGTCA+AGG + chr2_3:8518631-8518650 None:intergenic 45.0%
GCGAAATGTCACCATTGTTC+AGG - chr2_3:8518661-8518680 Msa0276260:intron 45.0%
GCGTATGAAGTCGGTATTTC+TGG + chr2_3:8518960-8518979 None:intergenic 45.0%
GGTCACTCTGTTGTAGTTCT+TGG - chr2_3:8519006-8519025 Msa0276260:five_prime_UTR 45.0%
CACTCTGTTGTAGTTCTTGG+AGG - chr2_3:8519009-8519028 Msa0276260:five_prime_UTR 45.0%
CTCTTCCAAAGGTGATAGCA+TGG - chr2_3:8519062-8519081 Msa0276260:five_prime_UTR 45.0%
!! TTTAAAAAATTCTATTTAAA+AGG + chr2_3:8515002-8515021 None:intergenic 5.0%
ATGGTCCGTATAAGCTGGTC+AGG - chr2_3:8512767-8512786 Msa0276260:three_prime_UTR 50.0%
ATCCGCCTGACCAGCTTATA+CGG + chr2_3:8512775-8512794 None:intergenic 50.0%
CTGCAGAATTTGGCAGATGC+AGG + chr2_3:8512835-8512854 None:intergenic 50.0%
! GTAGCATCAGAGAGCATGGA+AGG - chr2_3:8515823-8515842 Msa0276260:intron 50.0%
CTAGAAGCTCTACCCAGAAC+AGG + chr2_3:8516039-8516058 None:intergenic 50.0%
! CTGTTCTGGGTAGAGCTTCT+AGG - chr2_3:8516037-8516056 Msa0276260:intron 50.0%
CGCAGTGTGTGCATGTCATT+TGG - chr2_3:8516069-8516088 Msa0276260:intron 50.0%
TGCATCTGAACTCGCATAGC+TGG + chr2_3:8516877-8516896 None:intergenic 50.0%
GAACTCTCCGCGTATGAAGT+CGG + chr2_3:8518969-8518988 None:intergenic 50.0%
GTCCGTATAAGCTGGTCAGG+CGG - chr2_3:8512770-8512789 Msa0276260:three_prime_UTR 55.0%
GTGGCAGAGTTTACTGCTCC+CGG - chr2_3:8514721-8514740 Msa0276260:intron 55.0%
GTTCCAGCTGCAAGTGGTAC+TGG - chr2_3:8518985-8519004 Msa0276260:five_prime_UTR 55.0%
TGACCAGTACCACTTGCAGC+TGG + chr2_3:8518991-8519010 None:intergenic 55.0%
CGGAGAGTTCCAGCTGCAAG+TGG - chr2_3:8518979-8518998 Msa0276260:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 8512450 8519385 8512450 ID=Msa0276260;Name=Msa0276260
chr2_3 mRNA 8512450 8519385 8512450 ID=Msa0276260-mRNA-1;Parent=Msa0276260;Name=Msa0276260-mRNA-1;_AED=0.19;_eAED=0.19;_QI=549|0.87|0.94|1|0.56|0.64|17|772|229
chr2_3 exon 8512450 8512874 8512450 ID=Msa0276260-mRNA-1:exon:3852;Parent=Msa0276260-mRNA-1
chr2_3 exon 8513153 8513259 8513153 ID=Msa0276260-mRNA-1:exon:3851;Parent=Msa0276260-mRNA-1
chr2_3 exon 8513827 8513979 8513827 ID=Msa0276260-mRNA-1:exon:3850;Parent=Msa0276260-mRNA-1
chr2_3 exon 8514205 8514256 8514205 ID=Msa0276260-mRNA-1:exon:3849;Parent=Msa0276260-mRNA-1
chr2_3 exon 8514347 8514528 8514347 ID=Msa0276260-mRNA-1:exon:3848;Parent=Msa0276260-mRNA-1
chr2_3 exon 8514611 8514649 8514611 ID=Msa0276260-mRNA-1:exon:3847;Parent=Msa0276260-mRNA-1
chr2_3 exon 8515008 8515093 8515008 ID=Msa0276260-mRNA-1:exon:3846;Parent=Msa0276260-mRNA-1
chr2_3 exon 8515193 8515271 8515193 ID=Msa0276260-mRNA-1:exon:3845;Parent=Msa0276260-mRNA-1
chr2_3 exon 8515901 8516008 8515901 ID=Msa0276260-mRNA-1:exon:3844;Parent=Msa0276260-mRNA-1
chr2_3 exon 8516186 8516245 8516186 ID=Msa0276260-mRNA-1:exon:3843;Parent=Msa0276260-mRNA-1
chr2_3 exon 8516599 8516639 8516599 ID=Msa0276260-mRNA-1:exon:3842;Parent=Msa0276260-mRNA-1
chr2_3 exon 8517093 8517167 8517093 ID=Msa0276260-mRNA-1:exon:3841;Parent=Msa0276260-mRNA-1
chr2_3 exon 8517874 8517978 8517874 ID=Msa0276260-mRNA-1:exon:3840;Parent=Msa0276260-mRNA-1
chr2_3 exon 8518346 8518464 8518346 ID=Msa0276260-mRNA-1:exon:3839;Parent=Msa0276260-mRNA-1
chr2_3 exon 8518806 8518850 8518806 ID=Msa0276260-mRNA-1:exon:3838;Parent=Msa0276260-mRNA-1
chr2_3 exon 8518978 8519087 8518978 ID=Msa0276260-mRNA-1:exon:3837;Parent=Msa0276260-mRNA-1
chr2_3 exon 8519161 8519385 8519161 ID=Msa0276260-mRNA-1:exon:3836;Parent=Msa0276260-mRNA-1
chr2_3 five_prime_UTR 8519161 8519385 8519161 ID=Msa0276260-mRNA-1:five_prime_utr;Parent=Msa0276260-mRNA-1
chr2_3 five_prime_UTR 8518978 8519087 8518978 ID=Msa0276260-mRNA-1:five_prime_utr;Parent=Msa0276260-mRNA-1
chr2_3 five_prime_UTR 8518806 8518850 8518806 ID=Msa0276260-mRNA-1:five_prime_utr;Parent=Msa0276260-mRNA-1
chr2_3 five_prime_UTR 8518346 8518464 8518346 ID=Msa0276260-mRNA-1:five_prime_utr;Parent=Msa0276260-mRNA-1
chr2_3 five_prime_UTR 8517929 8517978 8517929 ID=Msa0276260-mRNA-1:five_prime_utr;Parent=Msa0276260-mRNA-1
chr2_3 CDS 8517874 8517928 8517874 ID=Msa0276260-mRNA-1:cds;Parent=Msa0276260-mRNA-1
chr2_3 CDS 8517093 8517167 8517093 ID=Msa0276260-mRNA-1:cds;Parent=Msa0276260-mRNA-1
chr2_3 CDS 8516599 8516639 8516599 ID=Msa0276260-mRNA-1:cds;Parent=Msa0276260-mRNA-1
chr2_3 CDS 8516186 8516245 8516186 ID=Msa0276260-mRNA-1:cds;Parent=Msa0276260-mRNA-1
chr2_3 CDS 8515901 8516008 8515901 ID=Msa0276260-mRNA-1:cds;Parent=Msa0276260-mRNA-1
chr2_3 CDS 8515193 8515271 8515193 ID=Msa0276260-mRNA-1:cds;Parent=Msa0276260-mRNA-1
chr2_3 CDS 8515008 8515093 8515008 ID=Msa0276260-mRNA-1:cds;Parent=Msa0276260-mRNA-1
chr2_3 CDS 8514611 8514649 8514611 ID=Msa0276260-mRNA-1:cds;Parent=Msa0276260-mRNA-1
chr2_3 CDS 8514382 8514528 8514382 ID=Msa0276260-mRNA-1:cds;Parent=Msa0276260-mRNA-1
chr2_3 three_prime_UTR 8514347 8514381 8514347 ID=Msa0276260-mRNA-1:three_prime_utr;Parent=Msa0276260-mRNA-1
chr2_3 three_prime_UTR 8514205 8514256 8514205 ID=Msa0276260-mRNA-1:three_prime_utr;Parent=Msa0276260-mRNA-1
chr2_3 three_prime_UTR 8513827 8513979 8513827 ID=Msa0276260-mRNA-1:three_prime_utr;Parent=Msa0276260-mRNA-1
chr2_3 three_prime_UTR 8513153 8513259 8513153 ID=Msa0276260-mRNA-1:three_prime_utr;Parent=Msa0276260-mRNA-1
chr2_3 three_prime_UTR 8512450 8512874 8512450 ID=Msa0276260-mRNA-1:three_prime_utr;Parent=Msa0276260-mRNA-1
Gene Sequence

>Msa0276260

ATGGCTGTGCATGCTCTTTCCTCTGAAACGCAACTGACAGTTTCGACACAATTAGGGTGTTCTATTTGTAGTAGTGCTTTGTCTTATACTGTTGATTCGTCCATTTCAGTGGCAGAGTTTACTGCTCCCGGTATGAAGAGGGTTAAAGAAATTGTTGAGGAGCTTCTTGGTGCGGATATATTTTTAGCACCTCAATTACATGCTGCATCTAAGAGATTCGACATTCACGTGCATCAGAGAGCATGGAAGGCTTTGAATTGGACTCAGAAGTTGAGTTTATTGACGATAGTTATCTGTGGAATAACATCTTCATCAGAGATTTCTACAAATAAGCTTGAGGGAAATGATGATGATAATGATTCATGGTTTGTTGAAATTTCTTTTATGGCTCGTGTTTTTTCCTGCATAATTCTATTAGGACTTTTCATGATTGTGAGTTTTATGATATTGAAATGCCTTGGAGCTGATTATGGCGAAATTCACAATGTCATTGAAGCGCAAGAAGAAACAGTGCAGTGCCTTACACCAAGAAAAAAAACTCAGGGATTAAGAATCAAGGGAAACAAATCTCATTTAAAGGCCATGAGTGAAAATAATCATGAAGTTATTGTCAAGTCAAATAGGTCTGATTGTTCATGTGTACAGAGTGTTGAATCTTCCTTTGTTGCTGATGTGGACTCTACATTATGA
Protein sequence

>Msa0276260

MAVHALSSETQLTVSTQLGCSICSSALSYTVDSSISVAEFTAPGMKRVKEIVEELLGADIFLAPQLHAASKRFDIHVHQRAWKALNWTQKLSLLTIVICGITSSSEISTNKLEGNDDDNDSWFVEISFMARVFSCIILLGLFMIVSFMILKCLGADYGEIHNVIEAQEETVQCLTPRKKTQGLRIKGNKSHLKAMSENNHEVIVKSNRSDCSCVQSVESSFVADVDSTL*