Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0320900 | XP_024634957.2 | 50.388 | 129 | 56 | 3 | 68 | 194 | 178 | 300 | 1.05e-22 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0276260 | Msa0320900 | 0.922236 | 1.278060e-88 | -8.615850e-47 |
| Msa0318860 | Msa0320900 | 0.916628 | 1.417187e-85 | -8.615850e-47 |
| Msa0320900 | Msa0664580 | 0.874853 | 4.882045e-68 | -8.615850e-47 |
| Msa0320900 | Msa1314690 | 0.923806 | 1.633994e-89 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0320900 | MtrunA17_Chr1g0152861 | 50.388 | 129 | 56 | 3 | 68 | 194 | 196 | 318 | 1.05e-26 | 108 |
| Msa0320900 | MtrunA17_Chr4g0045361 | 58.537 | 82 | 7 | 1 | 232 | 286 | 322 | 403 | 2.16e-21 | 94.0 |
| Msa0320900 | MtrunA17_Chr2g0333531 | 55.263 | 76 | 7 | 1 | 186 | 234 | 26 | 101 | 2.08e-17 | 77.4 |
| Msa0320900 | MtrunA17_Chr4g0007301 | 55.263 | 76 | 7 | 1 | 186 | 234 | 26 | 101 | 2.13e-17 | 77.4 |
| Msa0320900 | MtrunA17_Chr1g0203821 | 58.209 | 67 | 21 | 2 | 56 | 122 | 198 | 257 | 1.08e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 77 sgRNAs with CRISPR-Local
Find 362 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAATGTTTGATTGTATTCT+AGG | 0.171441 | 2_4:+21799626 | Msa0320900:three_prime_UTR |
| AGATGCAGGGCTGTTGTATT+TGG | 0.221313 | 2_4:-21793232 | None:intergenic |
| TTGTAGTTCTTGGAGATTTA+TGG | 0.225338 | 2_4:+21799413 | Msa0320900:CDS |
| GTCAAAATTTACACATTTCT+TGG | 0.229453 | 2_4:-21799551 | None:intergenic |
| TTGACGTTTAGTTCTATAAA+TGG | 0.231240 | 2_4:+21799706 | Msa0320900:three_prime_UTR |
| GACTTGGATTCTTTGGTAAT+TGG | 0.240802 | 2_4:+21799661 | Msa0320900:three_prime_UTR |
| GAATTACCTTCTGCAGAATT+TGG | 0.243166 | 2_4:-21793256 | None:intergenic |
| TTGATTGGACTTGGATTCTT+TGG | 0.249753 | 2_4:+21799654 | Msa0320900:three_prime_UTR |
| CTGACAGTTTCGACACAATT+AGG | 0.262315 | 2_4:+21794348 | Msa0320900:CDS |
| GGTCACTCTGTTGTAGTTCT+TGG | 0.286493 | 2_4:+21799403 | Msa0320900:CDS |
| GGGAAACAAATCTCATTTAA+AGG | 0.291448 | 2_4:+21797726 | Msa0320900:CDS |
| AAATGCCTTGGAGCTGATTA+TGG | 0.312317 | 2_4:+21797179 | Msa0320900:CDS |
| GAAAGGGTTGGCTTTCTCTA+AGG | 0.326027 | 2_4:+21793882 | Msa0320900:five_prime_UTR |
| GATGCAGGGCTGTTGTATTT+GGG | 0.335482 | 2_4:-21793231 | None:intergenic |
| GAAACTGTTGAGGAGCTTCT+TGG | 0.346657 | 2_4:+21795620 | Msa0320900:CDS |
| AGAACATGAGAAGAACAATA+TGG | 0.358822 | 2_4:+21794263 | Msa0320900:intron |
| GTATTTGGGTCACCTTCATA+TGG | 0.381405 | 2_4:-21793217 | None:intergenic |
| CTGCAGAATTTGGCAGATGC+AGG | 0.386507 | 2_4:-21793246 | None:intergenic |
| GAGCATGGAAGGCTTTGAAT+TGG | 0.390401 | 2_4:+21796242 | Msa0320900:CDS |
| GTTGGAATACAAGTTGTTGT+AGG | 0.390451 | 2_4:+21793067 | Msa0320900:five_prime_UTR |
| ATCCGCCTGACCAGCTTATA+CGG | 0.398573 | 2_4:-21793186 | None:intergenic |
| GTATTCTAGGAGAATTTGAT+TGG | 0.403456 | 2_4:+21799639 | Msa0320900:three_prime_UTR |
| TAGGAGAATTTGATTGGACT+TGG | 0.411989 | 2_4:+21799645 | Msa0320900:three_prime_UTR |
| CATTACATTATATTCAAGTA+AGG | 0.418443 | 2_4:+21799583 | Msa0320900:CDS |
| TATGAGTGGGTTGTGTTATG+AGG | 0.422892 | 2_4:+21797988 | Msa0320900:CDS |
| AAGTTATTGTCAAGTCAAAT+AGG | 0.442406 | 2_4:+21797770 | Msa0320900:CDS |
| GTTCCAGCTGCAAGTGGTAC+TGG | 0.450027 | 2_4:+21799382 | Msa0320900:CDS |
| AGTAGCAGTTAAGTTGTTGT+GGG | 0.451554 | 2_4:+21792953 | Msa0320900:five_prime_UTR |
| ATGGTCCGTATAAGCTGGTC+AGG | 0.456036 | 2_4:+21793181 | Msa0320900:five_prime_UTR |
| AAGTAGCAGTTAAGTTGTTG+TGG | 0.463675 | 2_4:+21792952 | Msa0320900:five_prime_UTR |
| TTTATGATATTGAAATGCCT+TGG | 0.464439 | 2_4:+21797167 | Msa0320900:CDS |
| ACCTGATGAAATCCTCACTT+TGG | 0.468216 | 2_4:+21793831 | Msa0320900:five_prime_UTR |
| TCTGTCAATTCAACAACCTA+TGG | 0.470702 | 2_4:+21795157 | Msa0320900:CDS |
| AGTAAACTCTGCCACTGAAA+TGG | 0.470878 | 2_4:-21795122 | None:intergenic |
| TCCAAAGTGAGGATTTCATC+AGG | 0.470978 | 2_4:-21793832 | None:intergenic |
| ATCAAACATTACAAATCAAA+GGG | 0.474368 | 2_4:-21799615 | None:intergenic |
| TGAGGGCAACTTACATATCC+AGG | 0.488191 | 2_4:+21798006 | Msa0320900:CDS |
| AGGCGCTCACCAAGTGTTTG+AGG | 0.514089 | 2_4:+21792857 | None:intergenic |
| GGTACCTAATAGAATTATGC+AGG | 0.514795 | 2_4:-21797033 | None:intergenic |
| AATCAAACATTACAAATCAA+AGG | 0.515244 | 2_4:-21799616 | None:intergenic |
| GACAATTTCAGGATATGTTG+AGG | 0.519087 | 2_4:+21793774 | Msa0320900:intron |
| GAACATGAGAAGAACAATAT+GGG | 0.524942 | 2_4:+21794264 | Msa0320900:intron |
| TGTTGAATTGACAGACTCAT+CGG | 0.526358 | 2_4:-21795149 | None:intergenic |
| GAGTCATTGTATTGTTCTTG+AGG | 0.529959 | 2_4:-21799439 | None:intergenic |
| CTAATAAACAACAATTGAAG+TGG | 0.533165 | 2_4:-21799741 | None:intergenic |
| GTTGAATTGACAGACTCATC+GGG | 0.535637 | 2_4:-21795148 | None:intergenic |
| TGCAGAATTTGGCAGATGCA+GGG | 0.537199 | 2_4:-21793245 | None:intergenic |
| TTTCAGGGATTAAGAATCAA+GGG | 0.540034 | 2_4:+21797706 | Msa0320900:intron |
| CTCTTCCAAAGGTGATAGCA+TGG | 0.542728 | 2_4:+21799459 | Msa0320900:CDS |
| AACTGTCAGTTGCGTTTCAG+AGG | 0.548651 | 2_4:-21794334 | None:intergenic |
| TTTATTGTGTAGGTATGAAG+AGG | 0.552831 | 2_4:+21795591 | Msa0320900:intron |
| TGACCAGTACCACTTGCAGC+TGG | 0.553337 | 2_4:-21799385 | None:intergenic |
| TTATTGTGTAGGTATGAAGA+GGG | 0.556937 | 2_4:+21795592 | Msa0320900:intron |
| GAACTCTCCGCGTATGAAGT+CGG | 0.562568 | 2_4:-21799363 | None:intergenic |
| GTAGCATCAGAGAGCATGGA+AGG | 0.563587 | 2_4:+21796231 | Msa0320900:intron |
| TTAGATGCAGCATGTAATTG+AGG | 0.564532 | 2_4:-21796016 | None:intergenic |
| ATGAGTGGGTTGTGTTATGA+GGG | 0.574980 | 2_4:+21797989 | Msa0320900:CDS |
| GATTTCTACAAATAAGCTTG+AGG | 0.582194 | 2_4:+21796321 | Msa0320900:CDS |
| TGAGAAGAACAATATGGGAC+TGG | 0.593652 | 2_4:+21794269 | Msa0320900:five_prime_UTR |
| CATCTGCCAAATTCTGCAGA+AGG | 0.595213 | 2_4:+21793250 | Msa0320900:five_prime_UTR |
| GAGACATTACCTCAAACACT+TGG | 0.601792 | 2_4:-21792866 | None:intergenic |
| AGGTTGCAAGATTATATGAG+TGG | 0.607865 | 2_4:+21797974 | Msa0320900:intron |
| CTTTGGACAATGCTGATCGT+CGG | 0.610336 | 2_4:+21793848 | Msa0320900:five_prime_UTR |
| TGTTGATTCGTCCATTTCAG+TGG | 0.613839 | 2_4:+21795111 | Msa0320900:CDS |
| GGATAGCTGAAACCATATGA+AGG | 0.625801 | 2_4:+21793205 | Msa0320900:five_prime_UTR |
| TTTCGCCATAATCAGCTCCA+AGG | 0.635005 | 2_4:-21797184 | None:intergenic |
| CAATACAATGACTCTTCCAA+AGG | 0.638042 | 2_4:+21799448 | Msa0320900:CDS |
| CGGAGAGTTCCAGCTGCAAG+TGG | 0.640628 | 2_4:+21799376 | Msa0320900:CDS |
| TTATTGACGATAGTTATCTG+TGG | 0.643786 | 2_4:+21796280 | Msa0320900:CDS |
| GTAGCAGTTAAGTTGTTGTG+GGG | 0.651574 | 2_4:+21792954 | Msa0320900:five_prime_UTR |
| GTCCGTATAAGCTGGTCAGG+CGG | 0.653266 | 2_4:+21793184 | Msa0320900:five_prime_UTR |
| AGAAATACCGACTTCATACG+CGG | 0.663561 | 2_4:+21799356 | Msa0320900:intron |
| ATGATGATGATAATGATGCA+TGG | 0.665315 | 2_4:+21796976 | Msa0320900:CDS |
| GATCAGCATTGTCCAAAGTG+AGG | 0.674747 | 2_4:-21793843 | None:intergenic |
| GGTTGCAAGATTATATGAGT+GGG | 0.684134 | 2_4:+21797975 | Msa0320900:intron |
| GAGGGTTAAAGAAACTGTTG+AGG | 0.709667 | 2_4:+21795610 | Msa0320900:CDS |
| TAAGAGATTCGACATTCACG+TGG | 0.724071 | 2_4:+21796036 | Msa0320900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAACTCTATAAATTATATT+TGG | + | chr2_4:21796539-21796558 | Msa0320900:intron | 10.0% |
| !!! | AACAATAATAGTTTATTTTA+AGG | - | chr2_4:21797057-21797076 | None:intergenic | 10.0% |
| !! | AATTTAATTGTTTCAAATTC+TGG | + | chr2_4:21794485-21794504 | Msa0320900:intron | 15.0% |
| !!! | TTTTTAAAGAATAAGTTACT+TGG | + | chr2_4:21794607-21794626 | Msa0320900:intron | 15.0% |
| !! | TTAAACTAAGTAATACTTTA+AGG | - | chr2_4:21795379-21795398 | None:intergenic | 15.0% |
| !!! | TTTGATTTTATTTGTTTTTC+AGG | + | chr2_4:21795723-21795742 | Msa0320900:intron | 15.0% |
| !!! | ACTAAATATCATTTTAAAAG+GGG | - | chr2_4:21796424-21796443 | None:intergenic | 15.0% |
| !!! | GACTAAATATCATTTTAAAA+GGG | - | chr2_4:21796425-21796444 | None:intergenic | 15.0% |
| !!! | AATTGGTAAATTTTTATACA+GGG | + | chr2_4:21796639-21796658 | Msa0320900:intron | 15.0% |
| !! | TTTAAAAACCATAAGAAATT+TGG | - | chr2_4:21796833-21796852 | None:intergenic | 15.0% |
| !!! | TTACTTAATCATACATTTTT+TGG | - | chr2_4:21796873-21796892 | None:intergenic | 15.0% |
| !!! | TTTTCAATGTATATTCATTA+TGG | + | chr2_4:21796929-21796948 | Msa0320900:intron | 15.0% |
| !!! | ATAAAAGAAGACTATTTTTA+GGG | - | chr2_4:21798221-21798240 | None:intergenic | 15.0% |
| !!! | AATAAAAGAAGACTATTTTT+AGG | - | chr2_4:21798222-21798241 | None:intergenic | 15.0% |
| !! | ATGTGAAAATATACAAAAAT+TGG | - | chr2_4:21798261-21798280 | None:intergenic | 15.0% |
| !! | AAAAACAAAGTTATAATGTA+AGG | - | chr2_4:21799109-21799128 | None:intergenic | 15.0% |
| !! | TGGTTATTTGTTCTTTATAT+TGG | + | chr2_4:21793092-21793111 | Msa0320900:intron | 20.0% |
| !! | ATTATATCTGGAAATTCAAA+CGG | - | chr2_4:21793585-21793604 | None:intergenic | 20.0% |
| !! | AGAAATAAAATATGAAAGCT+TGG | - | chr2_4:21793934-21793953 | None:intergenic | 20.0% |
| !! | TTTCTCTCATATATAGTTAT+AGG | - | chr2_4:21793965-21793984 | None:intergenic | 20.0% |
| !!! | TAATCTGTAATTTTGATTCA+AGG | + | chr2_4:21794047-21794066 | Msa0320900:intron | 20.0% |
| !!! | AATCTGTAATTTTGATTCAA+GGG | + | chr2_4:21794048-21794067 | Msa0320900:intron | 20.0% |
| !! | TATATATTAAAACTTAAGCG+AGG | - | chr2_4:21794691-21794710 | None:intergenic | 20.0% |
| !! | AAGAACAAAAGTAACAATAA+CGG | - | chr2_4:21795278-21795297 | None:intergenic | 20.0% |
| !!! | GTTAAAAGAGTTTACTTTTT+AGG | - | chr2_4:21795542-21795561 | None:intergenic | 20.0% |
| !! | GAATTAAATCAAACTTTACA+TGG | - | chr2_4:21795564-21795583 | None:intergenic | 20.0% |
| !!! | TTAGTGAAATTTTGAAACAA+TGG | + | chr2_4:21796119-21796138 | Msa0320900:intron | 20.0% |
| !!! | TAGTGAAATTTTGAAACAAT+GGG | + | chr2_4:21796120-21796139 | Msa0320900:intron | 20.0% |
| !!! | GGACTAAATATCATTTTAAA+AGG | - | chr2_4:21796426-21796445 | None:intergenic | 20.0% |
| !! | TATGTAAAACTATATGCATT+AGG | + | chr2_4:21796502-21796521 | Msa0320900:intron | 20.0% |
| !!! | GAATTGGTAAATTTTTATAC+AGG | + | chr2_4:21796638-21796657 | Msa0320900:intron | 20.0% |
| !!! | GTTTGTTGAAATTTCTTTTA+TGG | + | chr2_4:21796998-21797017 | Msa0320900:CDS | 20.0% |
| !! | GATAAAAAAAAATGTAACGT+AGG | - | chr2_4:21797097-21797116 | None:intergenic | 20.0% |
| !!! | TTTTACCTTTTTCATTTTGA+AGG | + | chr2_4:21797125-21797144 | Msa0320900:intron | 20.0% |
| !!! | GAATTTCAAAATTTGTTCAA+TGG | - | chr2_4:21797551-21797570 | None:intergenic | 20.0% |
| !! | AAACTATGGTAAAATTTCAA+AGG | + | chr2_4:21797872-21797891 | Msa0320900:intron | 20.0% |
| !!! | AATCCTTTTTATCTAACATT+AGG | + | chr2_4:21798438-21798457 | Msa0320900:intron | 20.0% |
| !! | AAACCTAATGTTAGATAAAA+AGG | - | chr2_4:21798444-21798463 | None:intergenic | 20.0% |
| !! | TTTATCTAACATTAGGTTTA+TGG | + | chr2_4:21798445-21798464 | Msa0320900:intron | 20.0% |
| !!! | ATGAAATATATGGATTACTT+AGG | - | chr2_4:21798659-21798678 | None:intergenic | 20.0% |
| !!! | TTTTGATAAATTTAAACCGA+TGG | - | chr2_4:21798797-21798816 | None:intergenic | 20.0% |
| !! | GGTTTAAATTTATCAAAAGT+TGG | + | chr2_4:21798799-21798818 | Msa0320900:intron | 20.0% |
| !! | ATGAAAAATCTGAGAATTAT+AGG | + | chr2_4:21799494-21799513 | Msa0320900:CDS | 20.0% |
| !! | CATTACATTATATTCAAGTA+AGG | + | chr2_4:21799583-21799602 | Msa0320900:CDS | 20.0% |
| !! | ATCAAACATTACAAATCAAA+GGG | - | chr2_4:21799618-21799637 | None:intergenic | 20.0% |
| !! | AATCAAACATTACAAATCAA+AGG | - | chr2_4:21799619-21799638 | None:intergenic | 20.0% |
| !!! | TGAATTGATGTTTTAGTGTT+TGG | + | chr2_4:21792983-21793002 | Msa0320900:five_prime_UTR | 25.0% |
| !!! | GAATTGATGTTTTAGTGTTT+GGG | + | chr2_4:21792984-21793003 | Msa0320900:five_prime_UTR | 25.0% |
| ! | TCAGATGCCAAAATTAAATA+CGG | - | chr2_4:21793137-21793156 | None:intergenic | 25.0% |
| !! | GAAATATAAGACATTTTGTG+CGG | + | chr2_4:21793364-21793383 | Msa0320900:intron | 25.0% |
| !! | GTGAAAATTTTCATTATGCA+AGG | + | chr2_4:21793422-21793441 | Msa0320900:five_prime_UTR | 25.0% |
| !!! | ATTTTCTTCTCATACTGATT+TGG | - | chr2_4:21794122-21794141 | None:intergenic | 25.0% |
| ! | AGTATGAGAAGAAAATGATA+TGG | + | chr2_4:21794126-21794145 | Msa0320900:intron | 25.0% |
| ! | ACTATGATGTACTAATTAGT+TGG | - | chr2_4:21794155-21794174 | None:intergenic | 25.0% |
| !!! | TCATTTGTTGATTCAAATTC+TGG | + | chr2_4:21794435-21794454 | Msa0320900:intron | 25.0% |
| !!! | AAGTTACTTGGTTTTCATTT+TGG | + | chr2_4:21794619-21794638 | Msa0320900:intron | 25.0% |
| ! | ATAAAAATTCATGTTCAGTG+AGG | + | chr2_4:21794708-21794727 | Msa0320900:intron | 25.0% |
| !! | TAACTTGTAAATCTTCAAGA+GGG | - | chr2_4:21794767-21794786 | None:intergenic | 25.0% |
| !! | ATAACTTGTAAATCTTCAAG+AGG | - | chr2_4:21794768-21794787 | None:intergenic | 25.0% |
| !! | GTAAAGAAAGCACATATTTA+TGG | - | chr2_4:21794898-21794917 | None:intergenic | 25.0% |
| !!! | TATGGTTTGAGATTTTTCTT+GGG | + | chr2_4:21795175-21795194 | Msa0320900:intron | 25.0% |
| !! | AAGTCTAACAATATCTTTTC+AGG | + | chr2_4:21795206-21795225 | Msa0320900:intron | 25.0% |
| !!! | AGAAAATCAATCATTTTTGC+AGG | - | chr2_4:21795237-21795256 | None:intergenic | 25.0% |
| !!! | GTTTACTTTTTAGGTTGAAA+TGG | - | chr2_4:21795533-21795552 | None:intergenic | 25.0% |
| !! | TTCTGTGATTTTTATTGTGT+AGG | + | chr2_4:21795581-21795600 | Msa0320900:intron | 25.0% |
| ! | TTCAATGTAAAGCAAAACAA+TGG | - | chr2_4:21795696-21795715 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTCAGGTTTATGA+AGG | + | chr2_4:21795733-21795752 | Msa0320900:intron | 25.0% |
| ! | TAAGAACCCTCTTTAATAAA+GGG | - | chr2_4:21795773-21795792 | None:intergenic | 25.0% |
| ! | GTTCTCATGATATTCATAAA+TGG | + | chr2_4:21795869-21795888 | Msa0320900:intron | 25.0% |
| !! | GAAGTATTATGTATGTTCTT+TGG | + | chr2_4:21796151-21796170 | Msa0320900:intron | 25.0% |
| ! | AAAATTGAGATTGACATTCT+AGG | - | chr2_4:21796359-21796378 | None:intergenic | 25.0% |
| ! | TAACCTTTCCAAATTTCTTA+TGG | + | chr2_4:21796822-21796841 | Msa0320900:intron | 25.0% |
| ! | AAACCATAAGAAATTTGGAA+AGG | - | chr2_4:21796828-21796847 | None:intergenic | 25.0% |
| !! | TTTTCCTGCATAATTCTATT+AGG | + | chr2_4:21797029-21797048 | Msa0320900:CDS | 25.0% |
| ! | AAAGTCCTTCAAAATGAAAA+AGG | - | chr2_4:21797133-21797152 | None:intergenic | 25.0% |
| ! | TTTATGATATTGAAATGCCT+TGG | + | chr2_4:21797167-21797186 | Msa0320900:CDS | 25.0% |
| ! | CTATGTATTATGTGCATAAA+AGG | + | chr2_4:21797376-21797395 | Msa0320900:intron | 25.0% |
| ! | AGATATACACCTATGTATTT+AGG | + | chr2_4:21797501-21797520 | Msa0320900:intron | 25.0% |
| !!! | GAACAAATTTTGAAATTCAG+TGG | + | chr2_4:21797553-21797572 | Msa0320900:intron | 25.0% |
| !! | TTCATGATTATTTTCACTCA+TGG | - | chr2_4:21797752-21797771 | None:intergenic | 25.0% |
| ! | AAGTTATTGTCAAGTCAAAT+AGG | + | chr2_4:21797770-21797789 | Msa0320900:CDS | 25.0% |
| ! | GATATTTATGAGTTTAGATG+TGG | + | chr2_4:21797896-21797915 | Msa0320900:intron | 25.0% |
| ! | AAATGAAATCAGGAAAATGA+AGG | - | chr2_4:21797950-21797969 | None:intergenic | 25.0% |
| ! | AAAAATAATAGAAGCTAACC+TGG | - | chr2_4:21798027-21798046 | None:intergenic | 25.0% |
| !!! | GGTTAGCTTCTATTATTTTT+TGG | + | chr2_4:21798027-21798046 | Msa0320900:intron | 25.0% |
| !! | TGCCTCTTTAATGATTTTAA+TGG | + | chr2_4:21798093-21798112 | Msa0320900:intron | 25.0% |
| ! | CACCATTAAAATCATTAAAG+AGG | - | chr2_4:21798098-21798117 | None:intergenic | 25.0% |
| ! | ATGTTAGATAAAAAGGATTG+AGG | - | chr2_4:21798437-21798456 | None:intergenic | 25.0% |
| ! | ACTATATGTAAAAATAACCC+TGG | - | chr2_4:21798736-21798755 | None:intergenic | 25.0% |
| ! | AAAGCTATGAAACTGTTATA+AGG | - | chr2_4:21798825-21798844 | None:intergenic | 25.0% |
| ! | ATGAACAATGAGTGATAAAT+TGG | - | chr2_4:21798878-21798897 | None:intergenic | 25.0% |
| ! | TTAGCAGTGAAAATATAGTT+TGG | - | chr2_4:21798914-21798933 | None:intergenic | 25.0% |
| !!! | ACATTATTTGCTAATTTGCT+AGG | + | chr2_4:21798951-21798970 | Msa0320900:intron | 25.0% |
| ! | AATAAGAGAAACTGTGAAAT+TGG | - | chr2_4:21799230-21799249 | None:intergenic | 25.0% |
| ! | AAGGAAAATATCGATAAGTA+AGG | + | chr2_4:21799253-21799272 | Msa0320900:intron | 25.0% |
| !! | ATGAATTTTACATCATGCTT+TGG | + | chr2_4:21799285-21799304 | Msa0320900:intron | 25.0% |
| ! | GTCAAAATTTACACATTTCT+TGG | - | chr2_4:21799554-21799573 | None:intergenic | 25.0% |
| ! | GTAATGTTTGATTGTATTCT+AGG | + | chr2_4:21799626-21799645 | Msa0320900:three_prime_UTR | 25.0% |
| !!! | TTGACGTTTAGTTCTATAAA+TGG | + | chr2_4:21799706-21799725 | Msa0320900:three_prime_UTR | 25.0% |
| ! | CTAATAAACAACAATTGAAG+TGG | - | chr2_4:21799744-21799763 | None:intergenic | 25.0% |
| AATACAAGTTGTTGTAGGTA+TGG | + | chr2_4:21793072-21793091 | Msa0320900:intron | 30.0% | |
| TCTAATCCAGAACTTGTAAA+GGG | - | chr2_4:21793294-21793313 | None:intergenic | 30.0% | |
| TTCTAATCCAGAACTTGTAA+AGG | - | chr2_4:21793295-21793314 | None:intergenic | 30.0% | |
| !! | TTTACAAGTTCTGGATTAGA+AGG | + | chr2_4:21793294-21793313 | Msa0320900:intron | 30.0% |
| GATTAGAAGGATATCTCTAA+TGG | + | chr2_4:21793307-21793326 | Msa0320900:intron | 30.0% | |
| TGATGTACTAATTATGCATC+AGG | + | chr2_4:21793455-21793474 | Msa0320900:intron | 30.0% | |
| CTTAAGCGCTTAATTATATC+TGG | - | chr2_4:21793597-21793616 | None:intergenic | 30.0% | |
| TGAAGCAAAGTTACAGAAAA+AGG | - | chr2_4:21793690-21793709 | None:intergenic | 30.0% | |
| TGTGTGAATTTGACAATTTC+AGG | + | chr2_4:21793763-21793782 | Msa0320900:intron | 30.0% | |
| ACAGATTATGATGCTAAGTA+GGG | - | chr2_4:21794035-21794054 | None:intergenic | 30.0% | |
| TACAGATTATGATGCTAAGT+AGG | - | chr2_4:21794036-21794055 | None:intergenic | 30.0% | |
| ACTGAAACTTCAATAAATGC+AGG | - | chr2_4:21794080-21794099 | None:intergenic | 30.0% | |
| AGAACATGAGAAGAACAATA+TGG | + | chr2_4:21794263-21794282 | Msa0320900:intron | 30.0% | |
| GAACATGAGAAGAACAATAT+GGG | + | chr2_4:21794264-21794283 | Msa0320900:intron | 30.0% | |
| !! | ATTTTAGTGACTGTCAACTA+TGG | + | chr2_4:21794296-21794315 | Msa0320900:exon | 30.0% |
| ACGCTGTTAAAATTGTTGAA+GGG | - | chr2_4:21794553-21794572 | None:intergenic | 30.0% | |
| GGTTGAAAATATATGTGCAA+TGG | + | chr2_4:21794640-21794659 | Msa0320900:intron | 30.0% | |
| TGGAACATAAAGTCAGAATT+TGG | - | chr2_4:21794744-21794763 | None:intergenic | 30.0% | |
| ! | TGACATTCAATTGATTCTCT+TGG | + | chr2_4:21794798-21794817 | Msa0320900:intron | 30.0% |
| ! | AAGCCTTTTCATTATCAGTA+TGG | + | chr2_4:21794965-21794984 | Msa0320900:intron | 30.0% |
| ! | TGTCCATACTGATAATGAAA+AGG | - | chr2_4:21794971-21794990 | None:intergenic | 30.0% |
| !!! | ATGGTCATTTTTTGTTGATG+TGG | + | chr2_4:21794997-21795016 | Msa0320900:intron | 30.0% |
| !! | GATTAGTTCTGATTGCTTTA+GGG | + | chr2_4:21795019-21795038 | Msa0320900:intron | 30.0% |
| CAAGAAAAATCTCAAACCAT+AGG | - | chr2_4:21795176-21795195 | None:intergenic | 30.0% | |
| !! | CTATGGTTTGAGATTTTTCT+TGG | + | chr2_4:21795174-21795193 | Msa0320900:intron | 30.0% |
| !! | ATGGTTTGAGATTTTTCTTG+GGG | + | chr2_4:21795176-21795195 | Msa0320900:intron | 30.0% |
| TTTATTGTGTAGGTATGAAG+AGG | + | chr2_4:21795591-21795610 | Msa0320900:intron | 30.0% | |
| TTATTGTGTAGGTATGAAGA+GGG | + | chr2_4:21795592-21795611 | Msa0320900:intron | 30.0% | |
| GTAAGAACCCTCTTTAATAA+AGG | - | chr2_4:21795774-21795793 | None:intergenic | 30.0% | |
| ! | CAAATGATAATGAACGTGTT+AGG | - | chr2_4:21795975-21795994 | None:intergenic | 30.0% |
| ACACGTTCATTATCATTTGT+AGG | + | chr2_4:21795976-21795995 | Msa0320900:intron | 30.0% | |
| !! | TATCGTCTCGATATTTTTGT+GGG | + | chr2_4:21796067-21796086 | Msa0320900:intron | 30.0% |
| !! | ATATTTTTGTGGGGGAATAA+GGG | + | chr2_4:21796077-21796096 | Msa0320900:intron | 30.0% |
| ! | GAGGTATTATGTATGATCTT+AGG | + | chr2_4:21796182-21796201 | Msa0320900:intron | 30.0% |
| TATGTATGATCTTAGGATGA+TGG | + | chr2_4:21796189-21796208 | Msa0320900:intron | 30.0% | |
| TTATTGACGATAGTTATCTG+TGG | + | chr2_4:21796280-21796299 | Msa0320900:CDS | 30.0% | |
| GATTTCTACAAATAAGCTTG+AGG | + | chr2_4:21796321-21796340 | Msa0320900:CDS | 30.0% | |
| ! | TTACATGTCCTCCTTTTATA+TGG | + | chr2_4:21796393-21796412 | Msa0320900:intron | 30.0% |
| AATGATATTTAGTCCTGTTC+CGG | + | chr2_4:21796431-21796450 | Msa0320900:intron | 30.0% | |
| GTAAAACTATATGCATTAGG+TGG | + | chr2_4:21796505-21796524 | Msa0320900:intron | 30.0% | |
| CATAATCTAGCTACAGAATA+TGG | - | chr2_4:21796575-21796594 | None:intergenic | 30.0% | |
| TCTGTAGCTAGATTATGAAT+TGG | + | chr2_4:21796578-21796597 | Msa0320900:intron | 30.0% | |
| ! | ATGACTGAAGTATTACAAGT+TGG | + | chr2_4:21796606-21796625 | Msa0320900:intron | 30.0% |
| !! | AAGTTGGTCTTATGATGAAT+TGG | + | chr2_4:21796622-21796641 | Msa0320900:intron | 30.0% |
| !! | TCGTTTCTAGCTATCAATAA+GGG | - | chr2_4:21796784-21796803 | None:intergenic | 30.0% |
| GTTCCTATGAATTGATTACA+GGG | + | chr2_4:21796951-21796970 | Msa0320900:intron | 30.0% | |
| TTTCCCTGTAATCAATTCAT+AGG | - | chr2_4:21796957-21796976 | None:intergenic | 30.0% | |
| ! | ATGATGATGATAATGATGCA+TGG | + | chr2_4:21796976-21796995 | Msa0320900:CDS | 30.0% |
| TTATTTAGTGGGATTGAAAG+TGG | - | chr2_4:21797311-21797330 | None:intergenic | 30.0% | |
| CATGGTTTCACTTATTTAGT+GGG | - | chr2_4:21797322-21797341 | None:intergenic | 30.0% | |
| CACTAAATAAGTGAAACCAT+GGG | + | chr2_4:21797321-21797340 | Msa0320900:intron | 30.0% | |
| ! | GCATTTTCTGTCAAATTTGA+GGG | + | chr2_4:21797398-21797417 | Msa0320900:intron | 30.0% |
| ATACACCTATGTATTTAGGT+AGG | + | chr2_4:21797505-21797524 | Msa0320900:intron | 30.0% | |
| !!! | GAGTTTTTTTTCTTGGTGTA+AGG | - | chr2_4:21797608-21797627 | None:intergenic | 30.0% |
| TACACCAAGAAAAAAAACTC+AGG | + | chr2_4:21797608-21797627 | Msa0320900:CDS | 30.0% | |
| !!! | CAAACCTGAGTTTTTTTTCT+TGG | - | chr2_4:21797615-21797634 | None:intergenic | 30.0% |
| AAAACTCAGGTTTGTATTGA+AGG | + | chr2_4:21797621-21797640 | Msa0320900:intron | 30.0% | |
| AAACTCAGGTTTGTATTGAA+GGG | + | chr2_4:21797622-21797641 | Msa0320900:intron | 30.0% | |
| ! | TGATCTCTTGCAAATTTTCA+GGG | + | chr2_4:21797691-21797710 | Msa0320900:intron | 30.0% |
| !! | TTTTCAGGGATTAAGAATCA+AGG | + | chr2_4:21797705-21797724 | Msa0320900:intron | 30.0% |
| TTTCAGGGATTAAGAATCAA+GGG | + | chr2_4:21797706-21797725 | Msa0320900:intron | 30.0% | |
| GGGAAACAAATCTCATTTAA+AGG | + | chr2_4:21797726-21797745 | Msa0320900:CDS | 30.0% | |
| !! | TTTCCTGATTTCATTTTTGC+AGG | + | chr2_4:21797954-21797973 | Msa0320900:intron | 30.0% |
| GTTTCTTTGTAGATGATCTT+AGG | + | chr2_4:21798068-21798087 | Msa0320900:intron | 30.0% | |
| AAGAACCAGCATATTGTAAA+CGG | - | chr2_4:21798162-21798181 | None:intergenic | 30.0% | |
| CTGGAATTTGAAGACATATA+TGG | + | chr2_4:21798363-21798382 | Msa0320900:intron | 30.0% | |
| AATCCATATATTTCATCCAG+TGG | + | chr2_4:21798663-21798682 | Msa0320900:intron | 30.0% | |
| !! | TTTCTTTTTAGTATGCTCCA+GGG | + | chr2_4:21798716-21798735 | Msa0320900:intron | 30.0% |
| !! | TTCAGGTTGAAAAGAAGAAT+GGG | + | chr2_4:21799075-21799094 | Msa0320900:intron | 30.0% |
| TTGTAGTTCTTGGAGATTTA+TGG | + | chr2_4:21799413-21799432 | Msa0320900:CDS | 30.0% | |
| !! | GTGTAAATTTTGACGTCAAA+TGG | + | chr2_4:21799560-21799579 | Msa0320900:CDS | 30.0% |
| ! | GTATTCTAGGAGAATTTGAT+TGG | + | chr2_4:21799639-21799658 | Msa0320900:three_prime_UTR | 30.0% |
| ! | AAGTAGCAGTTAAGTTGTTG+TGG | + | chr2_4:21792952-21792971 | Msa0320900:five_prime_UTR | 35.0% |
| ! | AGTAGCAGTTAAGTTGTTGT+GGG | + | chr2_4:21792953-21792972 | Msa0320900:five_prime_UTR | 35.0% |
| ! | TGTTTTGCAGAAGCTTAAGT+TGG | + | chr2_4:21793049-21793068 | Msa0320900:five_prime_UTR | 35.0% |
| GTTGGAATACAAGTTGTTGT+AGG | + | chr2_4:21793067-21793086 | Msa0320900:five_prime_UTR | 35.0% | |
| ! | TTTTTATGGTCCGTATAAGC+TGG | + | chr2_4:21793176-21793195 | Msa0320900:five_prime_UTR | 35.0% |
| GAATTACCTTCTGCAGAATT+TGG | - | chr2_4:21793259-21793278 | None:intergenic | 35.0% | |
| AGAAGGATATCTCTAATGGA+TGG | + | chr2_4:21793311-21793330 | Msa0320900:intron | 35.0% | |
| ! | TTTTGTGCGGTTTGAATTTC+AGG | + | chr2_4:21793377-21793396 | Msa0320900:intron | 35.0% |
| TCCAAAAAGAAAGTCTGGAA+CGG | - | chr2_4:21793663-21793682 | None:intergenic | 35.0% | |
| GTTCTTCCAAAAAGAAAGTC+TGG | - | chr2_4:21793668-21793687 | None:intergenic | 35.0% | |
| CTGAAAAGAAAACAGACACA+GGG | + | chr2_4:21793712-21793731 | Msa0320900:intron | 35.0% | |
| TGAAAAGAAAACAGACACAG+GGG | + | chr2_4:21793713-21793732 | Msa0320900:intron | 35.0% | |
| GACAATTTCAGGATATGTTG+AGG | + | chr2_4:21793774-21793793 | Msa0320900:intron | 35.0% | |
| TGTTCCTCTCATATGTTGAA+CGG | - | chr2_4:21794202-21794221 | None:intergenic | 35.0% | |
| CGCTGTTAAAATTGTTGAAG+GGG | - | chr2_4:21794552-21794571 | None:intergenic | 35.0% | |
| CACGCTGTTAAAATTGTTGA+AGG | - | chr2_4:21794554-21794573 | None:intergenic | 35.0% | |
| GACTTAAGAATTACCTCAGT+TGG | - | chr2_4:21794855-21794874 | None:intergenic | 35.0% | |
| GCTTTCTTTACAACTCTACT+TGG | + | chr2_4:21794907-21794926 | Msa0320900:intron | 35.0% | |
| TACAACTCTACTTGGTAAAG+AGG | + | chr2_4:21794915-21794934 | Msa0320900:intron | 35.0% | |
| ATCAGTATGGACAACATCAA+TGG | + | chr2_4:21794978-21794997 | Msa0320900:intron | 35.0% | |
| !! | GGATTAGTTCTGATTGCTTT+AGG | + | chr2_4:21795018-21795037 | Msa0320900:intron | 35.0% |
| !! | CTTTAGGGATGCTTTCATTT+TGG | + | chr2_4:21795034-21795053 | Msa0320900:intron | 35.0% |
| ! | GCAATTTTTGACACAATGCA+GGG | + | chr2_4:21795056-21795075 | Msa0320900:intron | 35.0% |
| TGTTGAATTGACAGACTCAT+CGG | - | chr2_4:21795152-21795171 | None:intergenic | 35.0% | |
| TCTGTCAATTCAACAACCTA+TGG | + | chr2_4:21795157-21795176 | Msa0320900:CDS | 35.0% | |
| CCTGTTTACAACTCATTCTA+GGG | + | chr2_4:21795496-21795515 | Msa0320900:intron | 35.0% | |
| AGGTTTATGAAGGAAACCAA+AGG | + | chr2_4:21795743-21795762 | Msa0320900:intron | 35.0% | |
| TTATGAAGGAAACCAAAGGT+TGG | + | chr2_4:21795747-21795766 | Msa0320900:intron | 35.0% | |
| TTTAATAAAGGGCCAACCTT+TGG | - | chr2_4:21795762-21795781 | None:intergenic | 35.0% | |
| CGTTCATTATCATTTGTAGG+CGG | + | chr2_4:21795979-21795998 | Msa0320900:intron | 35.0% | |
| TTAGATGCAGCATGTAATTG+AGG | - | chr2_4:21796019-21796038 | None:intergenic | 35.0% | |
| !! | CTATCGTCTCGATATTTTTG+TGG | + | chr2_4:21796066-21796085 | Msa0320900:intron | 35.0% |
| !! | ATCGTCTCGATATTTTTGTG+GGG | + | chr2_4:21796068-21796087 | Msa0320900:intron | 35.0% |
| !! | GATATTTTTGTGGGGGAATA+AGG | + | chr2_4:21796076-21796095 | Msa0320900:intron | 35.0% |
| AAGGGGATCAACCATATAAA+AGG | - | chr2_4:21796407-21796426 | None:intergenic | 35.0% | |
| ATGATATTTAGTCCTGTTCC+GGG | + | chr2_4:21796432-21796451 | Msa0320900:intron | 35.0% | |
| ! | TTTTTATACAGGGTTCTCAG+TGG | + | chr2_4:21796649-21796668 | Msa0320900:intron | 35.0% |
| !! | GTCGTTTCTAGCTATCAATA+AGG | - | chr2_4:21796785-21796804 | None:intergenic | 35.0% |
| ! | ATTGATAGCTAGAAACGACT+TGG | + | chr2_4:21796786-21796805 | Msa0320900:intron | 35.0% |
| GGTTCCTATGAATTGATTAC+AGG | + | chr2_4:21796950-21796969 | Msa0320900:intron | 35.0% | |
| GGTACCTAATAGAATTATGC+AGG | - | chr2_4:21797036-21797055 | None:intergenic | 35.0% | |
| ! | AACCGAAGCATTATAAAGAG+AGG | + | chr2_4:21797241-21797260 | Msa0320900:intron | 35.0% |
| ATAGCTGGTCATACTAACTA+TGG | - | chr2_4:21797267-21797286 | None:intergenic | 35.0% | |
| CCATGGTTTCACTTATTTAG+TGG | - | chr2_4:21797323-21797342 | None:intergenic | 35.0% | |
| CCACTAAATAAGTGAAACCA+TGG | + | chr2_4:21797320-21797339 | Msa0320900:intron | 35.0% | |
| TCACATTCAAAATTGTCCCA+TGG | - | chr2_4:21797340-21797359 | None:intergenic | 35.0% | |
| ! | GGCATTTTCTGTCAAATTTG+AGG | + | chr2_4:21797397-21797416 | Msa0320900:intron | 35.0% |
| GCATTCCTACCTAAATACAT+AGG | - | chr2_4:21797513-21797532 | None:intergenic | 35.0% | |
| ! | TCAGTGGTTATGTATTTTGC+AGG | + | chr2_4:21797569-21797588 | Msa0320900:intron | 35.0% |
| ! | GTGATCTCTTGCAAATTTTC+AGG | + | chr2_4:21797690-21797709 | Msa0320900:intron | 35.0% |
| ACCTGAAGAAGTTGAAACTA+TGG | + | chr2_4:21797858-21797877 | Msa0320900:intron | 35.0% | |
| ACCATAGTTTCAACTTCTTC+AGG | - | chr2_4:21797862-21797881 | None:intergenic | 35.0% | |
| GGTTGTAAAATGTCTTGCTT+TGG | + | chr2_4:21797917-21797936 | Msa0320900:intron | 35.0% | |
| CAACCTGCAAAAATGAAATC+AGG | - | chr2_4:21797960-21797979 | None:intergenic | 35.0% | |
| AGGTTGCAAGATTATATGAG+TGG | + | chr2_4:21797974-21797993 | Msa0320900:intron | 35.0% | |
| GGTTGCAAGATTATATGAGT+GGG | + | chr2_4:21797975-21797994 | Msa0320900:intron | 35.0% | |
| ATATTGTAAACGGAATGAGC+TGG | - | chr2_4:21798152-21798171 | None:intergenic | 35.0% | |
| TCATTCCGTTTACAATATGC+TGG | + | chr2_4:21798154-21798173 | Msa0320900:intron | 35.0% | |
| !! | GGTGATGATATTGCTTTTGT+TGG | + | chr2_4:21798331-21798350 | Msa0320900:intron | 35.0% |
| ! | CTTTTGTTGGAAAAGACATC+TGG | + | chr2_4:21798344-21798363 | Msa0320900:intron | 35.0% |
| ! | GGTTGAATTTGAAATCGCAT+TGG | + | chr2_4:21798466-21798485 | Msa0320900:intron | 35.0% |
| ATGTGTGTCATATGTGTGTT+TGG | + | chr2_4:21798573-21798592 | Msa0320900:intron | 35.0% | |
| TGTCCACTGGATGAAATATA+TGG | - | chr2_4:21798669-21798688 | None:intergenic | 35.0% | |
| TATTTCATCCAGTGGACATT+TGG | + | chr2_4:21798671-21798690 | Msa0320900:intron | 35.0% | |
| !! | GTTTCTTTTTAGTATGCTCC+AGG | + | chr2_4:21798715-21798734 | Msa0320900:intron | 35.0% |
| ! | CAAAGTGTTTACCTATAAGC+AGG | - | chr2_4:21798766-21798785 | None:intergenic | 35.0% |
| ACACTTTGTATAGACACCAT+CGG | + | chr2_4:21798778-21798797 | Msa0320900:intron | 35.0% | |
| GATAAATTGGATTACTGCCT+TGG | - | chr2_4:21798865-21798884 | None:intergenic | 35.0% | |
| !! | TTTGCTAATTTGCTAGGACA+AGG | + | chr2_4:21798957-21798976 | Msa0320900:intron | 35.0% |
| TTTGGCAAAACATGTTGGAA+TGG | - | chr2_4:21798991-21799010 | None:intergenic | 35.0% | |
| TACTCTTTGGCAAAACATGT+TGG | - | chr2_4:21798996-21799015 | None:intergenic | 35.0% | |
| ! | ACATGTTTTGCCAAAGAGTA+TGG | + | chr2_4:21798996-21799015 | Msa0320900:intron | 35.0% |
| ! | CTTCTTTTCAACCTGAACAA+TGG | - | chr2_4:21799072-21799091 | None:intergenic | 35.0% |
| !! | GTTCAGGTTGAAAAGAAGAA+TGG | + | chr2_4:21799074-21799093 | Msa0320900:intron | 35.0% |
| TCCTCTCATCACAATGATAT+TGG | - | chr2_4:21799133-21799152 | None:intergenic | 35.0% | |
| GTGATGAGAGGAAAAAAACT+CGG | + | chr2_4:21799141-21799160 | Msa0320900:intron | 35.0% | |
| CACAGTTTCTCTTATTGTGA+AGG | + | chr2_4:21799234-21799253 | Msa0320900:intron | 35.0% | |
| GAGTCATTGTATTGTTCTTG+AGG | - | chr2_4:21799442-21799461 | None:intergenic | 35.0% | |
| CAATACAATGACTCTTCCAA+AGG | + | chr2_4:21799448-21799467 | Msa0320900:CDS | 35.0% | |
| TAGGAGAATTTGATTGGACT+TGG | + | chr2_4:21799645-21799664 | Msa0320900:three_prime_UTR | 35.0% | |
| TTGATTGGACTTGGATTCTT+TGG | + | chr2_4:21799654-21799673 | Msa0320900:three_prime_UTR | 35.0% | |
| ! | GACTTGGATTCTTTGGTAAT+TGG | + | chr2_4:21799661-21799680 | Msa0320900:three_prime_UTR | 35.0% |
| GAGACATTACCTCAAACACT+TGG | - | chr2_4:21792869-21792888 | None:intergenic | 40.0% | |
| ! | GTAGCAGTTAAGTTGTTGTG+GGG | + | chr2_4:21792954-21792973 | Msa0320900:five_prime_UTR | 40.0% |
| ! | TTGGAGTTTTTGTCTTGCTG+CGG | + | chr2_4:21793111-21793130 | Msa0320900:intron | 40.0% |
| ! | AAGCTTGCCAAGCGTTTTTA+TGG | + | chr2_4:21793162-21793181 | Msa0320900:five_prime_UTR | 40.0% |
| ATACGGACCATAAAAACGCT+TGG | - | chr2_4:21793172-21793191 | None:intergenic | 40.0% | |
| GGATAGCTGAAACCATATGA+AGG | + | chr2_4:21793205-21793224 | Msa0320900:five_prime_UTR | 40.0% | |
| GTATTTGGGTCACCTTCATA+TGG | - | chr2_4:21793220-21793239 | None:intergenic | 40.0% | |
| GATTCACCCTTTACAAGTTC+TGG | + | chr2_4:21793285-21793304 | Msa0320900:intron | 40.0% | |
| TCCAAGCACTTGGAATTAGT+AGG | + | chr2_4:21793550-21793569 | Msa0320900:intron | 40.0% | |
| ! | TCCGTTCCAGACTTTCTTTT+TGG | + | chr2_4:21793659-21793678 | Msa0320900:intron | 40.0% |
| ! | CCTGTGTCTGTTTTCTTTTC+AGG | - | chr2_4:21793714-21793733 | None:intergenic | 40.0% |
| CCTGAAAAGAAAACAGACAC+AGG | + | chr2_4:21793711-21793730 | Msa0320900:intron | 40.0% | |
| ACACACATCACAGCAATTAC+GGG | - | chr2_4:21793748-21793767 | None:intergenic | 40.0% | |
| CACACACATCACAGCAATTA+CGG | - | chr2_4:21793749-21793768 | None:intergenic | 40.0% | |
| ACCTGATGAAATCCTCACTT+TGG | + | chr2_4:21793831-21793850 | Msa0320900:five_prime_UTR | 40.0% | |
| TCCAAAGTGAGGATTTCATC+AGG | - | chr2_4:21793835-21793854 | None:intergenic | 40.0% | |
| GTCGGTGTAAAAAGCTGAAA+GGG | + | chr2_4:21793866-21793885 | Msa0320900:five_prime_UTR | 40.0% | |
| GTGTAAAAAGCTGAAAGGGT+TGG | + | chr2_4:21793870-21793889 | Msa0320900:five_prime_UTR | 40.0% | |
| GCTAAGTAGGGATAGAGATT+GGG | - | chr2_4:21794023-21794042 | None:intergenic | 40.0% | |
| TGCTAAGTAGGGATAGAGAT+TGG | - | chr2_4:21794024-21794043 | None:intergenic | 40.0% | |
| CTCTCATATGTTGAACGGAA+TGG | - | chr2_4:21794197-21794216 | None:intergenic | 40.0% | |
| CATTCCGTTCAACATATGAG+AGG | + | chr2_4:21794195-21794214 | Msa0320900:intron | 40.0% | |
| TGAGAAGAACAATATGGGAC+TGG | + | chr2_4:21794269-21794288 | Msa0320900:five_prime_UTR | 40.0% | |
| CTGACAGTTTCGACACAATT+AGG | + | chr2_4:21794348-21794367 | Msa0320900:CDS | 40.0% | |
| TGGACTATACTTTGAGCACA+AGG | + | chr2_4:21794505-21794524 | Msa0320900:intron | 40.0% | |
| ATACTTTGAGCACAAGGTTG+TGG | + | chr2_4:21794511-21794530 | Msa0320900:intron | 40.0% | |
| CTTGTAAATCTTCAAGAGGG+TGG | - | chr2_4:21794764-21794783 | None:intergenic | 40.0% | |
| ! | AGATTGTTCTGAACCAACTG+AGG | + | chr2_4:21794839-21794858 | Msa0320900:intron | 40.0% |
| TAAAGAGGTCAATCCGAAGT+TGG | + | chr2_4:21794930-21794949 | Msa0320900:intron | 40.0% | |
| ! | GGCAATTTTTGACACAATGC+AGG | + | chr2_4:21795055-21795074 | Msa0320900:intron | 40.0% |
| !! | TGTTGATTCGTCCATTTCAG+TGG | + | chr2_4:21795111-21795130 | Msa0320900:CDS | 40.0% |
| AGTAAACTCTGCCACTGAAA+TGG | - | chr2_4:21795125-21795144 | None:intergenic | 40.0% | |
| GTTGAATTGACAGACTCATC+GGG | - | chr2_4:21795151-21795170 | None:intergenic | 40.0% | |
| GCCTGTTTACAACTCATTCT+AGG | + | chr2_4:21795495-21795514 | Msa0320900:intron | 40.0% | |
| CCCTAGAATGAGTTGTAAAC+AGG | - | chr2_4:21795499-21795518 | None:intergenic | 40.0% | |
| GAGGGTTAAAGAAACTGTTG+AGG | + | chr2_4:21795610-21795629 | Msa0320900:CDS | 40.0% | |
| ! | AGGTTGGCCCTTTATTAAAG+AGG | + | chr2_4:21795763-21795782 | Msa0320900:intron | 40.0% |
| ! | GGTTGGCCCTTTATTAAAGA+GGG | + | chr2_4:21795764-21795783 | Msa0320900:intron | 40.0% |
| TTCAGCGCAAAACTTCAGTT+TGG | - | chr2_4:21795926-21795945 | None:intergenic | 40.0% | |
| TAAGAGATTCGACATTCACG+TGG | + | chr2_4:21796036-21796055 | Msa0320900:CDS | 40.0% | |
| !! | TCGTCTCGATATTTTTGTGG+GGG | + | chr2_4:21796069-21796088 | Msa0320900:intron | 40.0% |
| ! | ATGTTCTTTGGAAACAGCTG+AGG | + | chr2_4:21796163-21796182 | Msa0320900:intron | 40.0% |
| ! | TTTTGTAGCATCAGAGAGCA+TGG | + | chr2_4:21796227-21796246 | Msa0320900:intron | 40.0% |
| GGGATCAACCATATAAAAGG+AGG | - | chr2_4:21796404-21796423 | None:intergenic | 40.0% | |
| ! | CTATCAATAAGGGCATGGTT+TGG | - | chr2_4:21796774-21796793 | None:intergenic | 40.0% |
| TCTAGCTATCAATAAGGGCA+TGG | - | chr2_4:21796779-21796798 | None:intergenic | 40.0% | |
| AAATGCCTTGGAGCTGATTA+TGG | + | chr2_4:21797179-21797198 | Msa0320900:CDS | 40.0% | |
| GGCCTCTCTTTATAATGCTT+CGG | - | chr2_4:21797246-21797265 | None:intergenic | 40.0% | |
| !! | CAGAGTGTTGAATCTTCCTT+TGG | + | chr2_4:21797811-21797830 | Msa0320900:intron | 40.0% |
| !! | TATGAGTGGGTTGTGTTATG+AGG | + | chr2_4:21797988-21798007 | Msa0320900:CDS | 40.0% |
| !! | ATGAGTGGGTTGTGTTATGA+GGG | + | chr2_4:21797989-21798008 | Msa0320900:CDS | 40.0% |
| TTTCCACCATCTCAGCATAT+TGG | + | chr2_4:21798310-21798329 | Msa0320900:intron | 40.0% | |
| TCATCACCAATATGCTGAGA+TGG | - | chr2_4:21798319-21798338 | None:intergenic | 40.0% | |
| AAAAGGATTGAGGTTCTCAG+TGG | - | chr2_4:21798427-21798446 | None:intergenic | 40.0% | |
| AATTGCAACCAAATGTCCAC+TGG | - | chr2_4:21798682-21798701 | None:intergenic | 40.0% | |
| TAGTTTCATCGCCTGCTTAT+AGG | + | chr2_4:21798752-21798771 | Msa0320900:intron | 40.0% | |
| ! | CATAGCTTTGCTTTGTATGC+TGG | + | chr2_4:21798836-21798855 | Msa0320900:intron | 40.0% |
| !! | TAATTTGCTAGGACAAGGCA+AGG | + | chr2_4:21798962-21798981 | Msa0320900:intron | 40.0% |
| CAACATTACGTAGTCGTCAA+GGG | - | chr2_4:21799027-21799046 | None:intergenic | 40.0% | |
| ACAATGGTGACATTTCGCTT+CGG | - | chr2_4:21799056-21799075 | None:intergenic | 40.0% | |
| GCCAATATCATTGTGATGAG+AGG | + | chr2_4:21799129-21799148 | Msa0320900:intron | 40.0% | |
| !! | AGAAATACCGACTTCATACG+CGG | + | chr2_4:21799356-21799375 | Msa0320900:intron | 40.0% |
| ! | GTTTTCCATGCTATCACCTT+TGG | - | chr2_4:21799467-21799486 | None:intergenic | 40.0% |
| !! | GCTGCGGCCGTATTTAATTT+TGG | + | chr2_4:21793127-21793146 | Msa0320900:intron | 45.0% |
| AAAAACGCTTGGCAAGCTTC+TGG | - | chr2_4:21793161-21793180 | None:intergenic | 45.0% | |
| GATGCAGGGCTGTTGTATTT+GGG | - | chr2_4:21793234-21793253 | None:intergenic | 45.0% | |
| AGATGCAGGGCTGTTGTATT+TGG | - | chr2_4:21793235-21793254 | None:intergenic | 45.0% | |
| TGCAGAATTTGGCAGATGCA+GGG | - | chr2_4:21793248-21793267 | None:intergenic | 45.0% | |
| CATCTGCCAAATTCTGCAGA+AGG | + | chr2_4:21793250-21793269 | Msa0320900:five_prime_UTR | 45.0% | |
| GTTTGCAACTTCCAAGCACT+TGG | + | chr2_4:21793540-21793559 | Msa0320900:intron | 45.0% | |
| GCCTACTAATTCCAAGTGCT+TGG | - | chr2_4:21793554-21793573 | None:intergenic | 45.0% | |
| GATCAGCATTGTCCAAAGTG+AGG | - | chr2_4:21793846-21793865 | None:intergenic | 45.0% | |
| CTTTGGACAATGCTGATCGT+CGG | + | chr2_4:21793848-21793867 | Msa0320900:five_prime_UTR | 45.0% | |
| CGTCGGTGTAAAAAGCTGAA+AGG | + | chr2_4:21793865-21793884 | Msa0320900:five_prime_UTR | 45.0% | |
| !! | GAAAGGGTTGGCTTTCTCTA+AGG | + | chr2_4:21793882-21793901 | Msa0320900:five_prime_UTR | 45.0% |
| AACTGTCAGTTGCGTTTCAG+AGG | - | chr2_4:21794337-21794356 | None:intergenic | 45.0% | |
| TTCTCAGTAGCTGCCAACTT+CGG | - | chr2_4:21794946-21794965 | None:intergenic | 45.0% | |
| GAAACTGTTGAGGAGCTTCT+TGG | + | chr2_4:21795620-21795639 | Msa0320900:CDS | 45.0% | |
| !! | GAGCATGGAAGGCTTTGAAT+TGG | + | chr2_4:21796242-21796261 | Msa0320900:CDS | 45.0% |
| AAATGACATGCACACACTGC+GGG | - | chr2_4:21796478-21796497 | None:intergenic | 45.0% | |
| CAAATGACATGCACACACTG+CGG | - | chr2_4:21796479-21796498 | None:intergenic | 45.0% | |
| TTTCGCCATAATCAGCTCCA+AGG | - | chr2_4:21797187-21797206 | None:intergenic | 45.0% | |
| !! | ATCTTCCTTTGGTGCTGATG+TGG | + | chr2_4:21797822-21797841 | Msa0320900:intron | 45.0% |
| TGAGGGCAACTTACATATCC+AGG | + | chr2_4:21798006-21798025 | Msa0320900:CDS | 45.0% | |
| TCACCAATATGCTGAGATGG+TGG | - | chr2_4:21798316-21798335 | None:intergenic | 45.0% | |
| GCTTTGTATGCTGGATACCA+AGG | + | chr2_4:21798845-21798864 | Msa0320900:intron | 45.0% | |
| AAGGGCAACACCATACTCTT+TGG | - | chr2_4:21799009-21799028 | None:intergenic | 45.0% | |
| GCAACATTACGTAGTCGTCA+AGG | - | chr2_4:21799028-21799047 | None:intergenic | 45.0% | |
| GCGAAATGTCACCATTGTTC+AGG | + | chr2_4:21799058-21799077 | Msa0320900:intron | 45.0% | |
| GCGTATGAAGTCGGTATTTC+TGG | - | chr2_4:21799357-21799376 | None:intergenic | 45.0% | |
| GGTCACTCTGTTGTAGTTCT+TGG | + | chr2_4:21799403-21799422 | Msa0320900:CDS | 45.0% | |
| CTCTTCCAAAGGTGATAGCA+TGG | + | chr2_4:21799459-21799478 | Msa0320900:CDS | 45.0% | |
| !!! | TTTTTTAAATTCTATTTAAA+AGG | - | chr2_4:21795411-21795430 | None:intergenic | 5.0% |
| ATGGTCCGTATAAGCTGGTC+AGG | + | chr2_4:21793181-21793200 | Msa0320900:five_prime_UTR | 50.0% | |
| ATCCGCCTGACCAGCTTATA+CGG | - | chr2_4:21793189-21793208 | None:intergenic | 50.0% | |
| CTGCAGAATTTGGCAGATGC+AGG | - | chr2_4:21793249-21793268 | None:intergenic | 50.0% | |
| ! | GTAGCATCAGAGAGCATGGA+AGG | + | chr2_4:21796231-21796250 | Msa0320900:intron | 50.0% |
| GAGATCCTAGAAGCTCTACC+CGG | - | chr2_4:21796453-21796472 | None:intergenic | 50.0% | |
| CGCAGTGTGTGCATGTCATT+TGG | + | chr2_4:21796477-21796496 | Msa0320900:intron | 50.0% | |
| TGCATCTGAACTCGCATAGC+TGG | - | chr2_4:21797282-21797301 | None:intergenic | 50.0% | |
| AGAGTCCACATCAGCACCAA+AGG | - | chr2_4:21797830-21797849 | None:intergenic | 50.0% | |
| GAACTCTCCGCGTATGAAGT+CGG | - | chr2_4:21799366-21799385 | None:intergenic | 50.0% | |
| GTCCGTATAAGCTGGTCAGG+CGG | + | chr2_4:21793184-21793203 | Msa0320900:five_prime_UTR | 55.0% | |
| CTAGAAGCTCTACCCGGAAC+AGG | - | chr2_4:21796447-21796466 | None:intergenic | 55.0% | |
| CTGTTCCGGGTAGAGCTTCT+AGG | + | chr2_4:21796445-21796464 | Msa0320900:intron | 55.0% | |
| GTTCCAGCTGCAAGTGGTAC+TGG | + | chr2_4:21799382-21799401 | Msa0320900:CDS | 55.0% | |
| TGACCAGTACCACTTGCAGC+TGG | - | chr2_4:21799388-21799407 | None:intergenic | 55.0% | |
| CGGAGAGTTCCAGCTGCAAG+TGG | + | chr2_4:21799376-21799395 | Msa0320900:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 21792864 | 21799782 | 21792864 | ID=Msa0320900;Name=Msa0320900 |
| chr2_4 | mRNA | 21792864 | 21799782 | 21792864 | ID=Msa0320900-mRNA-1;Parent=Msa0320900;Name=Msa0320900-mRNA-1;_AED=0.23;_eAED=0.23;_QI=549|0.64|0.8|1|0.78|0.73|15|179|315 |
| chr2_4 | exon | 21792864 | 21793088 | 21792864 | ID=Msa0320900-mRNA-1:exon:8016;Parent=Msa0320900-mRNA-1 |
| chr2_4 | exon | 21793162 | 21793271 | 21793162 | ID=Msa0320900-mRNA-1:exon:8017;Parent=Msa0320900-mRNA-1 |
| chr2_4 | exon | 21793399 | 21793443 | 21793399 | ID=Msa0320900-mRNA-1:exon:8018;Parent=Msa0320900-mRNA-1 |
| chr2_4 | exon | 21793785 | 21793903 | 21793785 | ID=Msa0320900-mRNA-1:exon:8019;Parent=Msa0320900-mRNA-1 |
| chr2_4 | exon | 21794265 | 21794369 | 21794265 | ID=Msa0320900-mRNA-1:exon:8020;Parent=Msa0320900-mRNA-1 |
| chr2_4 | exon | 21795077 | 21795178 | 21795077 | ID=Msa0320900-mRNA-1:exon:8021;Parent=Msa0320900-mRNA-1 |
| chr2_4 | exon | 21795603 | 21795643 | 21795603 | ID=Msa0320900-mRNA-1:exon:8022;Parent=Msa0320900-mRNA-1 |
| chr2_4 | exon | 21795998 | 21796057 | 21795998 | ID=Msa0320900-mRNA-1:exon:8023;Parent=Msa0320900-mRNA-1 |
| chr2_4 | exon | 21796235 | 21796342 | 21796235 | ID=Msa0320900-mRNA-1:exon:8024;Parent=Msa0320900-mRNA-1 |
| chr2_4 | exon | 21796972 | 21797050 | 21796972 | ID=Msa0320900-mRNA-1:exon:8025;Parent=Msa0320900-mRNA-1 |
| chr2_4 | exon | 21797147 | 21797232 | 21797147 | ID=Msa0320900-mRNA-1:exon:8026;Parent=Msa0320900-mRNA-1 |
| chr2_4 | exon | 21797591 | 21797629 | 21797591 | ID=Msa0320900-mRNA-1:exon:8027;Parent=Msa0320900-mRNA-1 |
| chr2_4 | exon | 21797712 | 21797791 | 21797712 | ID=Msa0320900-mRNA-1:exon:8028;Parent=Msa0320900-mRNA-1 |
| chr2_4 | exon | 21797976 | 21798027 | 21797976 | ID=Msa0320900-mRNA-1:exon:8029;Parent=Msa0320900-mRNA-1 |
| chr2_4 | exon | 21799358 | 21799782 | 21799358 | ID=Msa0320900-mRNA-1:exon:8030;Parent=Msa0320900-mRNA-1 |
| chr2_4 | five_prime_UTR | 21792864 | 21793088 | 21792864 | ID=Msa0320900-mRNA-1:five_prime_utr;Parent=Msa0320900-mRNA-1 |
| chr2_4 | five_prime_UTR | 21793162 | 21793271 | 21793162 | ID=Msa0320900-mRNA-1:five_prime_utr;Parent=Msa0320900-mRNA-1 |
| chr2_4 | five_prime_UTR | 21793399 | 21793443 | 21793399 | ID=Msa0320900-mRNA-1:five_prime_utr;Parent=Msa0320900-mRNA-1 |
| chr2_4 | five_prime_UTR | 21793785 | 21793903 | 21793785 | ID=Msa0320900-mRNA-1:five_prime_utr;Parent=Msa0320900-mRNA-1 |
| chr2_4 | five_prime_UTR | 21794265 | 21794314 | 21794265 | ID=Msa0320900-mRNA-1:five_prime_utr;Parent=Msa0320900-mRNA-1 |
| chr2_4 | CDS | 21794315 | 21794369 | 21794315 | ID=Msa0320900-mRNA-1:cds;Parent=Msa0320900-mRNA-1 |
| chr2_4 | CDS | 21795077 | 21795178 | 21795077 | ID=Msa0320900-mRNA-1:cds;Parent=Msa0320900-mRNA-1 |
| chr2_4 | CDS | 21795603 | 21795643 | 21795603 | ID=Msa0320900-mRNA-1:cds;Parent=Msa0320900-mRNA-1 |
| chr2_4 | CDS | 21795998 | 21796057 | 21795998 | ID=Msa0320900-mRNA-1:cds;Parent=Msa0320900-mRNA-1 |
| chr2_4 | CDS | 21796235 | 21796342 | 21796235 | ID=Msa0320900-mRNA-1:cds;Parent=Msa0320900-mRNA-1 |
| chr2_4 | CDS | 21796972 | 21797050 | 21796972 | ID=Msa0320900-mRNA-1:cds;Parent=Msa0320900-mRNA-1 |
| chr2_4 | CDS | 21797147 | 21797232 | 21797147 | ID=Msa0320900-mRNA-1:cds;Parent=Msa0320900-mRNA-1 |
| chr2_4 | CDS | 21797591 | 21797629 | 21797591 | ID=Msa0320900-mRNA-1:cds;Parent=Msa0320900-mRNA-1 |
| chr2_4 | CDS | 21797712 | 21797791 | 21797712 | ID=Msa0320900-mRNA-1:cds;Parent=Msa0320900-mRNA-1 |
| chr2_4 | CDS | 21797976 | 21798027 | 21797976 | ID=Msa0320900-mRNA-1:cds;Parent=Msa0320900-mRNA-1 |
| chr2_4 | CDS | 21799358 | 21799603 | 21799358 | ID=Msa0320900-mRNA-1:cds;Parent=Msa0320900-mRNA-1 |
| chr2_4 | three_prime_UTR | 21799604 | 21799782 | 21799604 | ID=Msa0320900-mRNA-1:three_prime_utr;Parent=Msa0320900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
