AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1314690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1314690 MtrunA17_Chr1g0152861 46.053 152 64 4 46 185 173 318 3.00e-28 110
Msa1314690 MtrunA17_Chr4g0007301 88.372 43 5 0 177 219 26 68 8.11e-20 82.0
Msa1314690 MtrunA17_Chr2g0333531 88.372 43 5 0 177 219 26 68 8.37e-20 82.0
Msa1314690 MtrunA17_Chr1g0179821 56.471 85 24 3 145 229 120 191 8.76e-17 79.0
Msa1314690 MtrunA17_Chr1g0203821 58.209 67 21 2 47 113 198 257 5.78e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 92 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAATGTTTGATTGTATTCT+AGG 0.171441 8_4:+13733280 Msa1314690:three_prime_UTR
TTGTAGTTCTTGGAGGTTTA+TGG 0.186325 8_4:+13733067 Msa1314690:three_prime_UTR
AGATGCAGGGCTGTTGTATT+TGG 0.221313 8_4:-13726868 None:intergenic
GTCAAAATTTACACATTTCT+TGG 0.229453 8_4:-13733205 None:intergenic
TTGACGTTTAGTTCTATAAA+TGG 0.231240 8_4:+13733360 Msa1314690:three_prime_UTR
GACTTGGATTCTTTGGTAAT+TGG 0.240802 8_4:+13733315 Msa1314690:three_prime_UTR
GAATTACCTTCTGCAGAATT+TGG 0.243166 8_4:-13726892 None:intergenic
GGTCACTCTGTTGTAGTTCT+TGG 0.244075 8_4:+13733057 Msa1314690:three_prime_UTR
TTGATTGGACTTGGATTCTT+TGG 0.249753 8_4:+13733308 Msa1314690:three_prime_UTR
CTGACAGTTTCGACACAATT+AGG 0.262315 8_4:+13727990 Msa1314690:CDS
GGGAAACAAATCTCATTTAA+AGG 0.291448 8_4:+13731372 Msa1314690:CDS
ACCAAAGTTTCAACTTCTTC+AGG 0.303452 8_4:-13731505 None:intergenic
AAATGCCTTGGAGCTGATTA+TGG 0.312317 8_4:+13730825 Msa1314690:CDS
CTGGAATTTGAAGACATATA+TGG 0.318108 8_4:+13732017 Msa1314690:three_prime_UTR
GAAAGGGTTGGCTTTCTCTA+AGG 0.326027 8_4:+13727518 Msa1314690:five_prime_UTR
GATGCAGGGCTGTTGTATTT+GGG 0.335482 8_4:-13726867 None:intergenic
GAAATTGTTGAGGAGCTTCT+TGG 0.339458 8_4:+13729264 Msa1314690:CDS
AGAACATGAGAAGAACAATA+TGG 0.358822 8_4:+13727905 Msa1314690:intron
TTTCCACCATCTCAGCATAT+TGG 0.372188 8_4:+13731964 Msa1314690:three_prime_UTR
GCGAAATGTCACCATTGTTC+AGG 0.377282 8_4:+13732712 Msa1314690:three_prime_UTR
GTATTTGGGTCACCTTCATA+TGG 0.381405 8_4:-13726853 None:intergenic
CTGCAGAATTTGGCAGATGC+AGG 0.386507 8_4:-13726882 None:intergenic
GAGCATGGAAGGCTTTGAAT+TGG 0.390401 8_4:+13729885 Msa1314690:CDS
GTTGGAATACAAGTTGTTGT+AGG 0.390451 8_4:+13726703 Msa1314690:five_prime_UTR
CACTCTGTTGTAGTTCTTGG+AGG 0.392190 8_4:+13733060 Msa1314690:three_prime_UTR
ATCCGCCTGACCAGCTTATA+CGG 0.398573 8_4:-13726822 None:intergenic
GTATTCTAGGAGAATTTGAT+TGG 0.403456 8_4:+13733293 Msa1314690:three_prime_UTR
TAGGAGAATTTGATTGGACT+TGG 0.411989 8_4:+13733299 Msa1314690:three_prime_UTR
CATTACATTATATTCAAGTA+AGG 0.418443 8_4:+13733237 Msa1314690:three_prime_UTR
TATGAGTGGGTTGTGTTATG+AGG 0.422892 8_4:+13731642 Msa1314690:three_prime_UTR
AAGGGCAACACCATACTCTT+TGG 0.424346 8_4:-13732660 None:intergenic
ATCTTCCTTTGTTGCTGATG+TGG 0.424788 8_4:+13731468 Msa1314690:CDS
ACCTGAAGAAGTTGAAACTT+TGG 0.427515 8_4:+13731504 Msa1314690:exon
AAGTTATTGTCAAGTCAAAT+AGG 0.442406 8_4:+13731416 Msa1314690:CDS
GTTCCAGCTGCAAGTGGTAC+TGG 0.450027 8_4:+13733036 Msa1314690:three_prime_UTR
AGTAGCAGTTAAGTTGTTGT+GGG 0.451554 8_4:+13726589 Msa1314690:five_prime_UTR
ATGGTCCGTATAAGCTGGTC+AGG 0.456036 8_4:+13726817 Msa1314690:five_prime_UTR
AAGTAGCAGTTAAGTTGTTG+TGG 0.463675 8_4:+13726588 Msa1314690:five_prime_UTR
TTTATGATATTGAAATGCCT+TGG 0.464439 8_4:+13730813 Msa1314690:CDS
ACCTGATGAAATCCTCACTT+TGG 0.468216 8_4:+13727467 Msa1314690:five_prime_UTR
AGTAAACTCTGCCACTGAAA+TGG 0.470878 8_4:-13728764 None:intergenic
TCCAAAGTGAGGATTTCATC+AGG 0.470978 8_4:-13727468 None:intergenic
ATCAAACATTACAAATCAAA+GGG 0.474368 8_4:-13733269 None:intergenic
ATGATGATGATAATGATTCA+TGG 0.483461 8_4:+13730619 Msa1314690:CDS
TGAGGGCAACTTACATATCC+AGG 0.488191 8_4:+13731660 Msa1314690:three_prime_UTR
AAACTTTGGTAAAATTTCAA+AGG 0.510648 8_4:+13731518 Msa1314690:three_prime_UTR
GGTACCTAATAGAATTATGC+AGG 0.514795 8_4:-13730676 None:intergenic
AATCAAACATTACAAATCAA+AGG 0.515244 8_4:-13733270 None:intergenic
GACAATTTCAGGATATGTTG+AGG 0.519087 8_4:+13727410 Msa1314690:intron
TACTCTTTGGCAAAACATGT+TGG 0.522651 8_4:-13732647 None:intergenic
GAACATGAGAAGAACAATAT+GGG 0.524942 8_4:+13727906 Msa1314690:intron
GTGGCAGAGTTTACTGCTCC+CGG 0.525626 8_4:+13728772 Msa1314690:CDS
GAGTCATTGTATTGTTCTTG+AGG 0.529959 8_4:-13733093 None:intergenic
CTAATAAACAACAATTGAAG+TGG 0.533165 8_4:-13733395 None:intergenic
TGCAGAATTTGGCAGATGCA+GGG 0.537199 8_4:-13726881 None:intergenic
TTTCAGGGATTAAGAATCAA+GGG 0.540034 8_4:+13731352 Msa1314690:intron
CTCTTCCAAAGGTGATAGCA+TGG 0.542728 8_4:+13733113 Msa1314690:three_prime_UTR
AACTGTCAGTTGCGTTTCAG+AGG 0.548651 8_4:-13727976 None:intergenic
TTTGGCAAAACATGTTGGAA+TGG 0.551867 8_4:-13732642 None:intergenic
TTTATTGTGTAGGTATGAAG+AGG 0.552831 8_4:+13729235 Msa1314690:intron
TGACCAGTACCACTTGCAGC+TGG 0.553337 8_4:-13733039 None:intergenic
TTATTGTGTAGGTATGAAGA+GGG 0.556937 8_4:+13729236 Msa1314690:intron
TCATCACCAATATGCTGAGA+TGG 0.559689 8_4:-13731970 None:intergenic
ACAATGGTGACATTTCGCTT+CGG 0.561001 8_4:-13732707 None:intergenic
GAACTCTCCGCGTATGAAGT+CGG 0.562568 8_4:-13733017 None:intergenic
GTAGCATCAGAGAGCATGGA+AGG 0.563587 8_4:+13729874 Msa1314690:intron
TTAGATGCAGCATGTAATTG+AGG 0.564532 8_4:-13729659 None:intergenic
GCAACATTACGTAGTCGTCA+AGG 0.568608 8_4:-13732679 None:intergenic
CAACATTACGTAGTCGTCAA+GGG 0.570337 8_4:-13732678 None:intergenic
AGGCGCTCATCAAGTGTTTG+AGG 0.573893 8_4:+13726493 None:intergenic
ATGAGTGGGTTGTGTTATGA+GGG 0.574980 8_4:+13731643 Msa1314690:three_prime_UTR
GATTTCTACAAATAAGCTTG+AGG 0.582194 8_4:+13729964 Msa1314690:CDS
TGAGAAGAACAATATGGGAC+TGG 0.593652 8_4:+13727911 Msa1314690:five_prime_UTR
CATCTGCCAAATTCTGCAGA+AGG 0.595213 8_4:+13726886 Msa1314690:five_prime_UTR
TAATTTGCTAGGACAAGGCA+AGG 0.597697 8_4:+13732616 Msa1314690:intron
TCACCAATATGCTGAGATGG+TGG 0.601205 8_4:-13731967 None:intergenic
AGGTTGCGAGATTATATGAG+TGG 0.605845 8_4:+13731628 Msa1314690:intron
CTTTGGACAATGCTGATCGT+CGG 0.610336 8_4:+13727484 Msa1314690:five_prime_UTR
TGTTGATTCGTCCATTTCAG+TGG 0.613839 8_4:+13728753 Msa1314690:CDS
AGAGTCCACATCAGCAACAA+AGG 0.619740 8_4:-13731473 None:intergenic
GAGGGTTAAAGAAATTGTTG+AGG 0.621800 8_4:+13729254 Msa1314690:CDS
GGATAGCTGAAACCATATGA+AGG 0.625801 8_4:+13726841 Msa1314690:five_prime_UTR
TTTCGCCATAATCAGCTCCA+AGG 0.635005 8_4:-13730830 None:intergenic
CAATACAATGACTCTTCCAA+AGG 0.638042 8_4:+13733102 Msa1314690:three_prime_UTR
CGGAGAGTTCCAGCTGCAAG+TGG 0.640628 8_4:+13733030 Msa1314690:three_prime_UTR
TTATTGACGATAGTTATCTG+TGG 0.643786 8_4:+13729923 Msa1314690:CDS
GTAGCAGTTAAGTTGTTGTG+GGG 0.651574 8_4:+13726590 Msa1314690:five_prime_UTR
GTCCGTATAAGCTGGTCAGG+CGG 0.653266 8_4:+13726820 Msa1314690:five_prime_UTR
AGAAATACCGACTTCATACG+CGG 0.663561 8_4:+13733010 Msa1314690:intron
GATCAGCATTGTCCAAAGTG+AGG 0.674747 8_4:-13727479 None:intergenic
GGTTGCGAGATTATATGAGT+GGG 0.681349 8_4:+13731629 Msa1314690:intron
TAAGAGATTCGACATTCACG+TGG 0.724071 8_4:+13729679 Msa1314690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAACTCTATAAATTATATT+TGG + chr8_4:13730182-13730201 Msa1314690:intron 10.0%
!!! AACAATAATAGTTTATTTTA+AGG - chr8_4:13730700-13730719 None:intergenic 10.0%
!! AATTTAATTGTTTCAAATTC+TGG + chr8_4:13728127-13728146 Msa1314690:intron 15.0%
!! TTAAACTAAGTAATACTTTA+AGG - chr8_4:13729021-13729040 None:intergenic 15.0%
!!! TTTGATTTTATTTGTTTTTC+AGG + chr8_4:13729367-13729386 Msa1314690:intron 15.0%
!!! ACTAAATATCATTTTAAAAG+GGG - chr8_4:13730067-13730086 None:intergenic 15.0%
!!! GACTAAATATCATTTTAAAA+GGG - chr8_4:13730068-13730087 None:intergenic 15.0%
!!! AATTGGTAAATTTTTATACA+GGG + chr8_4:13730282-13730301 Msa1314690:intron 15.0%
!! TTTAAAAACCATAAGAAATT+TGG - chr8_4:13730476-13730495 None:intergenic 15.0%
!!! TTACTTAATCATACATTTTT+TGG - chr8_4:13730516-13730535 None:intergenic 15.0%
!!! TTTTCAATGTATATTCATTA+TGG + chr8_4:13730572-13730591 Msa1314690:intron 15.0%
!! AATAAAAAAAAATGTAACGT+AGG - chr8_4:13730740-13730759 None:intergenic 15.0%
!!! ATAAAAGAAGACTATTTTTA+GGG - chr8_4:13731875-13731894 None:intergenic 15.0%
!!! AATAAAAGAAGACTATTTTT+AGG - chr8_4:13731876-13731895 None:intergenic 15.0%
!! ATGTGAAAATATACAAAAAT+TGG - chr8_4:13731915-13731934 None:intergenic 15.0%
!! AAAAACAAAGTTATAATGTA+AGG - chr8_4:13732763-13732782 None:intergenic 15.0%
!! TGGTTATTTGTTCTTTATAT+TGG + chr8_4:13726728-13726747 Msa1314690:intron 20.0%
!! ATTATATCTGGAAATTCAAA+CGG - chr8_4:13727221-13727240 None:intergenic 20.0%
!! AGAAATAAAATATGAAAGCT+TGG - chr8_4:13727570-13727589 None:intergenic 20.0%
!! TTTCTCTCATATATAGTTAT+AGG - chr8_4:13727601-13727620 None:intergenic 20.0%
!!! AATCTGTAATTTTGATTCAA+TGG + chr8_4:13727684-13727703 Msa1314690:intron 20.0%
!! TATATATTAAAACTTAAGCG+AGG - chr8_4:13728333-13728352 None:intergenic 20.0%
!! AAGAACAAAAGTAACAATAA+CGG - chr8_4:13728920-13728939 None:intergenic 20.0%
!!! GTTAAAAGAGTTTACTTTTT+AGG - chr8_4:13729186-13729205 None:intergenic 20.0%
!! GAATTAAATCAAACTTTACA+TGG - chr8_4:13729208-13729227 None:intergenic 20.0%
!!! TTAGTGAAATTTTGAAACAA+TGG + chr8_4:13729762-13729781 Msa1314690:intron 20.0%
!!! TAGTGAAATTTTGAAACAAT+GGG + chr8_4:13729763-13729782 Msa1314690:intron 20.0%
!!! GGACTAAATATCATTTTAAA+AGG - chr8_4:13730069-13730088 None:intergenic 20.0%
!! TATGTAAAACTATATGCATT+AGG + chr8_4:13730145-13730164 Msa1314690:intron 20.0%
!!! GAATTGGTAAATTTTTATAC+AGG + chr8_4:13730281-13730300 Msa1314690:intron 20.0%
!!! GTTTGTTGAAATTTCTTTTA+TGG + chr8_4:13730641-13730660 Msa1314690:CDS 20.0%
!!! TTTTACCTTTTTCATTTTGA+AGG + chr8_4:13730771-13730790 Msa1314690:intron 20.0%
!!! GAATTTCAAAATTTGTTCAA+TGG - chr8_4:13731197-13731216 None:intergenic 20.0%
!! AAACTTTGGTAAAATTTCAA+AGG + chr8_4:13731518-13731537 Msa1314690:three_prime_UTR 20.0%
!! AAAAATGATGTAAAGAAATC+AGG - chr8_4:13731606-13731625 None:intergenic 20.0%
!!! AATCCTTTTTATCTAACATT+AGG + chr8_4:13732092-13732111 Msa1314690:intron 20.0%
!! AAACCTAATGTTAGATAAAA+AGG - chr8_4:13732098-13732117 None:intergenic 20.0%
!! TTTATCTAACATTAGGTTTA+TGG + chr8_4:13732099-13732118 Msa1314690:intron 20.0%
!!! ATGAAATATATGGATTACTT+AGG - chr8_4:13732313-13732332 None:intergenic 20.0%
!!! TTTTGATAAATTTAAACCGA+TGG - chr8_4:13732451-13732470 None:intergenic 20.0%
!! GGTTTAAATTTATCAAAAGT+TGG + chr8_4:13732453-13732472 Msa1314690:intron 20.0%
!! ATGAAAAATCTGAGAATTAT+AGG + chr8_4:13733148-13733167 Msa1314690:three_prime_UTR 20.0%
!! CATTACATTATATTCAAGTA+AGG + chr8_4:13733237-13733256 Msa1314690:three_prime_UTR 20.0%
!! ATCAAACATTACAAATCAAA+GGG - chr8_4:13733272-13733291 None:intergenic 20.0%
!! AATCAAACATTACAAATCAA+AGG - chr8_4:13733273-13733292 None:intergenic 20.0%
!!! TGAATTGATGTTTTAGTGTT+TGG + chr8_4:13726619-13726638 Msa1314690:five_prime_UTR 25.0%
!!! GAATTGATGTTTTAGTGTTT+GGG + chr8_4:13726620-13726639 Msa1314690:five_prime_UTR 25.0%
! TCAGATGCCAAAATTAAATA+CGG - chr8_4:13726773-13726792 None:intergenic 25.0%
!! GAAATATAAGACATTTTGTG+CGG + chr8_4:13727000-13727019 Msa1314690:intron 25.0%
!! GTGAAAATTTTCAATATGCA+AGG + chr8_4:13727058-13727077 Msa1314690:five_prime_UTR 25.0%
!!! ATTTTCTTCTCATACTGATT+TGG - chr8_4:13727758-13727777 None:intergenic 25.0%
! AGTATGAGAAGAAAATGATA+TGG + chr8_4:13727762-13727781 Msa1314690:intron 25.0%
! ACTATGATGTACTAATTAGT+TGG - chr8_4:13727791-13727810 None:intergenic 25.0%
!!! TCATTTGTTGATTCAAATTC+TGG + chr8_4:13728077-13728096 Msa1314690:intron 25.0%
!! TTTTTAACGAATAAGTTACC+TGG + chr8_4:13728249-13728268 Msa1314690:intron 25.0%
!! TAACTTGTAAATCTTCAAGA+GGG - chr8_4:13728409-13728428 None:intergenic 25.0%
!! ATAACTTGTAAATCTTCAAG+AGG - chr8_4:13728410-13728429 None:intergenic 25.0%
!! GTAAAGAAAGCACATATTTA+TGG - chr8_4:13728540-13728559 None:intergenic 25.0%
!!! TATGGTTTGAGATTTTTCTT+GGG + chr8_4:13728817-13728836 Msa1314690:intron 25.0%
!! AAGTCTAACAATATCTTTTC+AGG + chr8_4:13728848-13728867 Msa1314690:intron 25.0%
!!! AGAAAATCAATCATTTTTGC+AGG - chr8_4:13728879-13728898 None:intergenic 25.0%
!!! GTTTACTTTTTAGGTTGAAA+TGG - chr8_4:13729177-13729196 None:intergenic 25.0%
!! TTCTGTGATTTTTATTGTGT+AGG + chr8_4:13729225-13729244 Msa1314690:intron 25.0%
! TTCAATGTAAAGCAAAACAA+TGG - chr8_4:13729340-13729359 None:intergenic 25.0%
!!! TTTGTTTTTCAGGTTTATGA+AGG + chr8_4:13729377-13729396 Msa1314690:intron 25.0%
! TAAGAACCCTCTTTAATAAA+GGG - chr8_4:13729417-13729436 None:intergenic 25.0%
! GTTCTCATGATATTCATAAA+TGG + chr8_4:13729513-13729532 Msa1314690:intron 25.0%
!! GAAGTATTATGTATGTTCTT+TGG + chr8_4:13729794-13729813 Msa1314690:intron 25.0%
! AAAATTGAGATTGACATTCT+AGG - chr8_4:13730002-13730021 None:intergenic 25.0%
! TAACCTTTCCAAATTTCTTA+TGG + chr8_4:13730465-13730484 Msa1314690:intron 25.0%
! AAACCATAAGAAATTTGGAA+AGG - chr8_4:13730471-13730490 None:intergenic 25.0%
!! ATGATGATGATAATGATTCA+TGG + chr8_4:13730619-13730638 Msa1314690:CDS 25.0%
!! TTTTCCTGCATAATTCTATT+AGG + chr8_4:13730672-13730691 Msa1314690:CDS 25.0%
! AAAGTCCTTCAAAATGAAAA+AGG - chr8_4:13730779-13730798 None:intergenic 25.0%
! TTTATGATATTGAAATGCCT+TGG + chr8_4:13730813-13730832 Msa1314690:CDS 25.0%
! CTATGTATTATGTGCATAAA+AGG + chr8_4:13731022-13731041 Msa1314690:intron 25.0%
! AGATATACACCTATGTATTT+AGG + chr8_4:13731147-13731166 Msa1314690:intron 25.0%
!!! GAACAAATTTTGAAATTCAG+TGG + chr8_4:13731199-13731218 Msa1314690:intron 25.0%
!! TTCATGATTATTTTCACTCA+TGG - chr8_4:13731398-13731417 None:intergenic 25.0%
! AAGTTATTGTCAAGTCAAAT+AGG + chr8_4:13731416-13731435 Msa1314690:CDS 25.0%
! GATATTTATGAGTTTAGATG+TGG + chr8_4:13731542-13731561 Msa1314690:intron 25.0%
! TAAAGAAATCAGGAAAATGA+AGG - chr8_4:13731596-13731615 None:intergenic 25.0%
!!! TTTCTTTACATCATTTTTGC+AGG + chr8_4:13731608-13731627 Msa1314690:intron 25.0%
! AAAAATAATAGAAGCTAACC+TGG - chr8_4:13731681-13731700 None:intergenic 25.0%
!!! GGTTAGCTTCTATTATTTTT+TGG + chr8_4:13731681-13731700 Msa1314690:intron 25.0%
! ATCATCTACAAAGAAACAAA+AGG - chr8_4:13731719-13731738 None:intergenic 25.0%
!! TGCCTCTTTAATGATTTTAA+TGG + chr8_4:13731747-13731766 Msa1314690:intron 25.0%
! CACCATTAAAATCATTAAAG+AGG - chr8_4:13731752-13731771 None:intergenic 25.0%
! ATGTTAGATAAAAAGGATTG+AGG - chr8_4:13732091-13732110 None:intergenic 25.0%
! ACTATATGTAAAAATAACCC+TGG - chr8_4:13732390-13732409 None:intergenic 25.0%
! AAAGCTATGAAACTGTTATA+AGG - chr8_4:13732479-13732498 None:intergenic 25.0%
! ATGAACAATGAGTGATAAAT+TGG - chr8_4:13732532-13732551 None:intergenic 25.0%
! TTAGCAGTGAAAATATAGTT+TGG - chr8_4:13732568-13732587 None:intergenic 25.0%
!!! ACATTATTTGCTAATTTGCT+AGG + chr8_4:13732605-13732624 Msa1314690:intron 25.0%
! AATAAGAGAAACTGTGAAAT+TGG - chr8_4:13732884-13732903 None:intergenic 25.0%
! AAGGAAAATATCGATAAGTA+AGG + chr8_4:13732907-13732926 Msa1314690:intron 25.0%
!! ATGAATTTTACATCATGCTT+TGG + chr8_4:13732939-13732958 Msa1314690:intron 25.0%
! GTCAAAATTTACACATTTCT+TGG - chr8_4:13733208-13733227 None:intergenic 25.0%
! GTAATGTTTGATTGTATTCT+AGG + chr8_4:13733280-13733299 Msa1314690:three_prime_UTR 25.0%
!!! TTGACGTTTAGTTCTATAAA+TGG + chr8_4:13733360-13733379 Msa1314690:three_prime_UTR 25.0%
! CTAATAAACAACAATTGAAG+TGG - chr8_4:13733398-13733417 None:intergenic 25.0%
AATACAAGTTGTTGTAGGTA+TGG + chr8_4:13726708-13726727 Msa1314690:intron 30.0%
TCTAATCCAGAACTTGTAAA+GGG - chr8_4:13726930-13726949 None:intergenic 30.0%
TTCTAATCCAGAACTTGTAA+AGG - chr8_4:13726931-13726950 None:intergenic 30.0%
!! TTTACAAGTTCTGGATTAGA+AGG + chr8_4:13726930-13726949 Msa1314690:intron 30.0%
GATTAGAAGGATATCTCTAA+TGG + chr8_4:13726943-13726962 Msa1314690:intron 30.0%
TGATGTACTAATTATGCATC+AGG + chr8_4:13727091-13727110 Msa1314690:intron 30.0%
CTTAAGCGCTTAATTATATC+TGG - chr8_4:13727233-13727252 None:intergenic 30.0%
TGAAGCAAAGTTACAGAAAA+AGG - chr8_4:13727326-13727345 None:intergenic 30.0%
TGTGTGAATTTGACAATTTC+AGG + chr8_4:13727399-13727418 Msa1314690:intron 30.0%
ACAGATTATGATGCTAAGTA+GGG - chr8_4:13727671-13727690 None:intergenic 30.0%
TACAGATTATGATGCTAAGT+AGG - chr8_4:13727672-13727691 None:intergenic 30.0%
ACTGAAACTTCAATAAATGC+AGG - chr8_4:13727716-13727735 None:intergenic 30.0%
AGAACATGAGAAGAACAATA+TGG + chr8_4:13727905-13727924 Msa1314690:intron 30.0%
GAACATGAGAAGAACAATAT+GGG + chr8_4:13727906-13727925 Msa1314690:intron 30.0%
!! ATTTTAGTGACTGTCAACTA+TGG + chr8_4:13727938-13727957 Msa1314690:exon 30.0%
ACGCTGTTAAAATTGTTGAA+GGG - chr8_4:13728195-13728214 None:intergenic 30.0%
!! AAGTTACCTGGTTTTCATTT+TGG + chr8_4:13728261-13728280 Msa1314690:intron 30.0%
TTTCAACCAAAATGAAAACC+AGG - chr8_4:13728270-13728289 None:intergenic 30.0%
GGTTGAAAATATATGTGCAA+TGG + chr8_4:13728282-13728301 Msa1314690:intron 30.0%
TGGAACATAAAGTCAGAATT+TGG - chr8_4:13728386-13728405 None:intergenic 30.0%
! TGACATTCAATTGATTCTCT+TGG + chr8_4:13728440-13728459 Msa1314690:intron 30.0%
! AAGCCTTTTCATTATCAGTA+TGG + chr8_4:13728607-13728626 Msa1314690:intron 30.0%
! TGTCCATACTGATAATGAAA+AGG - chr8_4:13728613-13728632 None:intergenic 30.0%
!!! ATGGTCATTTTTTGTTGATG+TGG + chr8_4:13728639-13728658 Msa1314690:intron 30.0%
!! GATTAGTTCTGATTGCTTTA+GGG + chr8_4:13728661-13728680 Msa1314690:intron 30.0%
CAAGAAAAATCTCAAACCAT+AGG - chr8_4:13728818-13728837 None:intergenic 30.0%
!! CTATGGTTTGAGATTTTTCT+TGG + chr8_4:13728816-13728835 Msa1314690:intron 30.0%
!! ATGGTTTGAGATTTTTCTTG+GGG + chr8_4:13728818-13728837 Msa1314690:intron 30.0%
TTTATTGTGTAGGTATGAAG+AGG + chr8_4:13729235-13729254 Msa1314690:intron 30.0%
TTATTGTGTAGGTATGAAGA+GGG + chr8_4:13729236-13729255 Msa1314690:intron 30.0%
TTATGAAGGAAACCAAATGT+TGG + chr8_4:13729391-13729410 Msa1314690:intron 30.0%
TTTAATAAAGGGCCAACATT+TGG - chr8_4:13729406-13729425 None:intergenic 30.0%
GTAAGAACCCTCTTTAATAA+AGG - chr8_4:13729418-13729437 None:intergenic 30.0%
! CAAATGATAATGAACGTGTT+AGG - chr8_4:13729618-13729637 None:intergenic 30.0%
ACACGTTCATTATCATTTGT+AGG + chr8_4:13729619-13729638 Msa1314690:intron 30.0%
!! TATCGTCTCGATATTTTTGT+GGG + chr8_4:13729710-13729729 Msa1314690:intron 30.0%
!! ATATTTTTGTGGGGGAATAA+GGG + chr8_4:13729720-13729739 Msa1314690:intron 30.0%
! GAGGTATTATGTATGATCTT+AGG + chr8_4:13729825-13729844 Msa1314690:intron 30.0%
TATGTATGATCTTAGGATGA+TGG + chr8_4:13729832-13729851 Msa1314690:intron 30.0%
TTATTGACGATAGTTATCTG+TGG + chr8_4:13729923-13729942 Msa1314690:CDS 30.0%
GATTTCTACAAATAAGCTTG+AGG + chr8_4:13729964-13729983 Msa1314690:CDS 30.0%
! TTACATGTCCTCCTTTTATA+TGG + chr8_4:13730036-13730055 Msa1314690:intron 30.0%
AATGATATTTAGTCCTGTTC+TGG + chr8_4:13730074-13730093 Msa1314690:intron 30.0%
ATGATATTTAGTCCTGTTCT+GGG + chr8_4:13730075-13730094 Msa1314690:intron 30.0%
GTAAAACTATATGCATTAGG+TGG + chr8_4:13730148-13730167 Msa1314690:intron 30.0%
CATAATCTAGCTACAGAATA+TGG - chr8_4:13730218-13730237 None:intergenic 30.0%
TCTGTAGCTAGATTATGAAT+TGG + chr8_4:13730221-13730240 Msa1314690:intron 30.0%
! ATGACTGAAGTATTACAAGT+TGG + chr8_4:13730249-13730268 Msa1314690:intron 30.0%
!! AAGTTGGTCTTATGATGAAT+TGG + chr8_4:13730265-13730284 Msa1314690:intron 30.0%
!! TCGTTTCTAGCTATCAATAA+GGG - chr8_4:13730427-13730446 None:intergenic 30.0%
GTTCCTATGAATTGATTACA+GGG + chr8_4:13730594-13730613 Msa1314690:intron 30.0%
TTTCCCTGTAATCAATTCAT+AGG - chr8_4:13730600-13730619 None:intergenic 30.0%
! AACTGAAGCATTATAAAGAG+AGG + chr8_4:13730887-13730906 Msa1314690:intron 30.0%
TTATTTAGTGGGATTGAAAG+TGG - chr8_4:13730957-13730976 None:intergenic 30.0%
CATGGTTTCACTTATTTAGT+GGG - chr8_4:13730968-13730987 None:intergenic 30.0%
CACTAAATAAGTGAAACCAT+GGG + chr8_4:13730967-13730986 Msa1314690:intron 30.0%
! GCATTTTCTGTCAAATTTGA+GGG + chr8_4:13731044-13731063 Msa1314690:intron 30.0%
ATACACCTATGTATTTAGGT+AGG + chr8_4:13731151-13731170 Msa1314690:intron 30.0%
!!! GAGTTTTTTTTCTTGGTGTA+AGG - chr8_4:13731254-13731273 None:intergenic 30.0%
TACACCAAGAAAAAAAACTC+AGG + chr8_4:13731254-13731273 Msa1314690:CDS 30.0%
!!! CAAACCTGAGTTTTTTTTCT+TGG - chr8_4:13731261-13731280 None:intergenic 30.0%
AAAACTCAGGTTTGTATTGA+AGG + chr8_4:13731267-13731286 Msa1314690:intron 30.0%
AAACTCAGGTTTGTATTGAA+GGG + chr8_4:13731268-13731287 Msa1314690:intron 30.0%
! TGATCTCTTGCAAATTTTCA+GGG + chr8_4:13731337-13731356 Msa1314690:intron 30.0%
!! TTTTCAGGGATTAAGAATCA+AGG + chr8_4:13731351-13731370 Msa1314690:intron 30.0%
TTTCAGGGATTAAGAATCAA+GGG + chr8_4:13731352-13731371 Msa1314690:intron 30.0%
GGGAAACAAATCTCATTTAA+AGG + chr8_4:13731372-13731391 Msa1314690:CDS 30.0%
GTTTCTTTGTAGATGATCTT+AGG + chr8_4:13731722-13731741 Msa1314690:intron 30.0%
AAGAACCAGCATATTGTAAA+CGG - chr8_4:13731816-13731835 None:intergenic 30.0%
!! TGATATTGCTTTTGTTGGAA+AGG + chr8_4:13731990-13732009 Msa1314690:three_prime_UTR 30.0%
CTGGAATTTGAAGACATATA+TGG + chr8_4:13732017-13732036 Msa1314690:three_prime_UTR 30.0%
AATCCATATATTTCATCCAG+TGG + chr8_4:13732317-13732336 Msa1314690:intron 30.0%
!! TTTCTTTTTAGTATGCTCCA+GGG + chr8_4:13732370-13732389 Msa1314690:intron 30.0%
!! TTCAGGTTGAAAAGAAGAAT+GGG + chr8_4:13732729-13732748 Msa1314690:intron 30.0%
!! GTGTAAATTTTGACGTCAAA+TGG + chr8_4:13733214-13733233 Msa1314690:three_prime_UTR 30.0%
! GTATTCTAGGAGAATTTGAT+TGG + chr8_4:13733293-13733312 Msa1314690:three_prime_UTR 30.0%
! AAGTAGCAGTTAAGTTGTTG+TGG + chr8_4:13726588-13726607 Msa1314690:five_prime_UTR 35.0%
! AGTAGCAGTTAAGTTGTTGT+GGG + chr8_4:13726589-13726608 Msa1314690:five_prime_UTR 35.0%
! TGTTTTGCAGAAGCTTAAGT+TGG + chr8_4:13726685-13726704 Msa1314690:five_prime_UTR 35.0%
GTTGGAATACAAGTTGTTGT+AGG + chr8_4:13726703-13726722 Msa1314690:five_prime_UTR 35.0%
! TTTTTATGGTCCGTATAAGC+TGG + chr8_4:13726812-13726831 Msa1314690:five_prime_UTR 35.0%
GAATTACCTTCTGCAGAATT+TGG - chr8_4:13726895-13726914 None:intergenic 35.0%
AGAAGGATATCTCTAATGGA+TGG + chr8_4:13726947-13726966 Msa1314690:intron 35.0%
! TTTTGTGCGGTTTGAATTTC+AGG + chr8_4:13727013-13727032 Msa1314690:intron 35.0%
TCCAAAAAGAAAGTCTGGAA+CGG - chr8_4:13727299-13727318 None:intergenic 35.0%
GTTCTTCCAAAAAGAAAGTC+TGG - chr8_4:13727304-13727323 None:intergenic 35.0%
CTGAAAAGAAAACAGACACA+GGG + chr8_4:13727348-13727367 Msa1314690:intron 35.0%
TGAAAAGAAAACAGACACAG+GGG + chr8_4:13727349-13727368 Msa1314690:intron 35.0%
GACAATTTCAGGATATGTTG+AGG + chr8_4:13727410-13727429 Msa1314690:intron 35.0%
TGTTCCTCTCATATGTTGAA+CGG - chr8_4:13727844-13727863 None:intergenic 35.0%
CGCTGTTAAAATTGTTGAAG+GGG - chr8_4:13728194-13728213 None:intergenic 35.0%
CACGCTGTTAAAATTGTTGA+AGG - chr8_4:13728196-13728215 None:intergenic 35.0%
GACTTAAGAATTACCTCAGT+TGG - chr8_4:13728497-13728516 None:intergenic 35.0%
GCTTTCTTTACAACTCTACT+TGG + chr8_4:13728549-13728568 Msa1314690:intron 35.0%
TACAACTCTACTTGGTAAAG+AGG + chr8_4:13728557-13728576 Msa1314690:intron 35.0%
ATCAGTATGGACAACATCAA+TGG + chr8_4:13728620-13728639 Msa1314690:intron 35.0%
!! GGATTAGTTCTGATTGCTTT+AGG + chr8_4:13728660-13728679 Msa1314690:intron 35.0%
!! CTTTAGGGATGCTTTCATTT+TGG + chr8_4:13728676-13728695 Msa1314690:intron 35.0%
! GCAATTTTTGACACAATGCA+GGG + chr8_4:13728698-13728717 Msa1314690:intron 35.0%
TCTGTCAATTCAACAACCTA+TGG + chr8_4:13728799-13728818 Msa1314690:intron 35.0%
CCTGTTTACAACTCATTCTA+GGG + chr8_4:13729140-13729159 Msa1314690:intron 35.0%
GAGGGTTAAAGAAATTGTTG+AGG + chr8_4:13729254-13729273 Msa1314690:CDS 35.0%
ATGTTGGCCCTTTATTAAAG+AGG + chr8_4:13729407-13729426 Msa1314690:intron 35.0%
TGTTGGCCCTTTATTAAAGA+GGG + chr8_4:13729408-13729427 Msa1314690:intron 35.0%
CGTTCATTATCATTTGTAGG+CGG + chr8_4:13729622-13729641 Msa1314690:intron 35.0%
TTAGATGCAGCATGTAATTG+AGG - chr8_4:13729662-13729681 None:intergenic 35.0%
!! CTATCGTCTCGATATTTTTG+TGG + chr8_4:13729709-13729728 Msa1314690:intron 35.0%
!! ATCGTCTCGATATTTTTGTG+GGG + chr8_4:13729711-13729730 Msa1314690:intron 35.0%
!! GATATTTTTGTGGGGGAATA+AGG + chr8_4:13729719-13729738 Msa1314690:intron 35.0%
AAGGGGATCAACCATATAAA+AGG - chr8_4:13730050-13730069 None:intergenic 35.0%
! TTTTTATACAGGGTTCTCAG+TGG + chr8_4:13730292-13730311 Msa1314690:intron 35.0%
!! GTCGTTTCTAGCTATCAATA+AGG - chr8_4:13730428-13730447 None:intergenic 35.0%
! ATTGATAGCTAGAAACGACT+TGG + chr8_4:13730429-13730448 Msa1314690:intron 35.0%
GGTTCCTATGAATTGATTAC+AGG + chr8_4:13730593-13730612 Msa1314690:intron 35.0%
GGTACCTAATAGAATTATGC+AGG - chr8_4:13730679-13730698 None:intergenic 35.0%
ATAGCTGGTCATACTAACTA+TGG - chr8_4:13730913-13730932 None:intergenic 35.0%
CCATGGTTTCACTTATTTAG+TGG - chr8_4:13730969-13730988 None:intergenic 35.0%
CCACTAAATAAGTGAAACCA+TGG + chr8_4:13730966-13730985 Msa1314690:intron 35.0%
TCACATTCAAAATTGTCCCA+TGG - chr8_4:13730986-13731005 None:intergenic 35.0%
! GGCATTTTCTGTCAAATTTG+AGG + chr8_4:13731043-13731062 Msa1314690:intron 35.0%
GCATTCCTACCTAAATACAT+AGG - chr8_4:13731159-13731178 None:intergenic 35.0%
! TCAGTGGTTATGTATTTTGC+AGG + chr8_4:13731215-13731234 Msa1314690:intron 35.0%
! GTGATCTCTTGCAAATTTTC+AGG + chr8_4:13731336-13731355 Msa1314690:intron 35.0%
ACCTGAAGAAGTTGAAACTT+TGG + chr8_4:13731504-13731523 Msa1314690:exon 35.0%
ACCAAAGTTTCAACTTCTTC+AGG - chr8_4:13731508-13731527 None:intergenic 35.0%
GGTTGTAAAATGTCTTGCTT+TGG + chr8_4:13731563-13731582 Msa1314690:intron 35.0%
ATATTGTAAACGGAATGAGC+TGG - chr8_4:13731806-13731825 None:intergenic 35.0%
TCATTCCGTTTACAATATGC+TGG + chr8_4:13731808-13731827 Msa1314690:intron 35.0%
!! GGTGATGATATTGCTTTTGT+TGG + chr8_4:13731985-13732004 Msa1314690:three_prime_UTR 35.0%
! GGTTGAATTTGAAATCGCAT+TGG + chr8_4:13732120-13732139 Msa1314690:intron 35.0%
ATGTGTGTCATATGTGTGTT+TGG + chr8_4:13732227-13732246 Msa1314690:intron 35.0%
TGTCCACTGGATGAAATATA+TGG - chr8_4:13732323-13732342 None:intergenic 35.0%
TATTTCATCCAGTGGACATT+TGG + chr8_4:13732325-13732344 Msa1314690:intron 35.0%
!! GTTTCTTTTTAGTATGCTCC+AGG + chr8_4:13732369-13732388 Msa1314690:intron 35.0%
! CAAAGTGTTTACCTATAAGC+AGG - chr8_4:13732420-13732439 None:intergenic 35.0%
ACACTTTGTATAGACACCAT+CGG + chr8_4:13732432-13732451 Msa1314690:intron 35.0%
GATAAATTGGATTACTGCCT+TGG - chr8_4:13732519-13732538 None:intergenic 35.0%
!! TTTGCTAATTTGCTAGGACA+AGG + chr8_4:13732611-13732630 Msa1314690:intron 35.0%
TTTGGCAAAACATGTTGGAA+TGG - chr8_4:13732645-13732664 None:intergenic 35.0%
TACTCTTTGGCAAAACATGT+TGG - chr8_4:13732650-13732669 None:intergenic 35.0%
! ACATGTTTTGCCAAAGAGTA+TGG + chr8_4:13732650-13732669 Msa1314690:three_prime_UTR 35.0%
! CTTCTTTTCAACCTGAACAA+TGG - chr8_4:13732726-13732745 None:intergenic 35.0%
!! GTTCAGGTTGAAAAGAAGAA+TGG + chr8_4:13732728-13732747 Msa1314690:intron 35.0%
TCCTCTCATCACAATGATAT+TGG - chr8_4:13732787-13732806 None:intergenic 35.0%
GTGATGAGAGGAAAAAAACT+CGG + chr8_4:13732795-13732814 Msa1314690:intron 35.0%
CACAGTTTCTCTTATTGTGA+AGG + chr8_4:13732888-13732907 Msa1314690:intron 35.0%
TTGTAGTTCTTGGAGGTTTA+TGG + chr8_4:13733067-13733086 Msa1314690:three_prime_UTR 35.0%
GAGTCATTGTATTGTTCTTG+AGG - chr8_4:13733096-13733115 None:intergenic 35.0%
CAATACAATGACTCTTCCAA+AGG + chr8_4:13733102-13733121 Msa1314690:three_prime_UTR 35.0%
TAGGAGAATTTGATTGGACT+TGG + chr8_4:13733299-13733318 Msa1314690:three_prime_UTR 35.0%
TTGATTGGACTTGGATTCTT+TGG + chr8_4:13733308-13733327 Msa1314690:three_prime_UTR 35.0%
! GACTTGGATTCTTTGGTAAT+TGG + chr8_4:13733315-13733334 Msa1314690:three_prime_UTR 35.0%
! GTAGCAGTTAAGTTGTTGTG+GGG + chr8_4:13726590-13726609 Msa1314690:five_prime_UTR 40.0%
! TTGGAGTTTTTGTCTTGCTG+CGG + chr8_4:13726747-13726766 Msa1314690:intron 40.0%
! AAGCTTGCCAAGCGTTTTTA+TGG + chr8_4:13726798-13726817 Msa1314690:five_prime_UTR 40.0%
ATACGGACCATAAAAACGCT+TGG - chr8_4:13726808-13726827 None:intergenic 40.0%
GGATAGCTGAAACCATATGA+AGG + chr8_4:13726841-13726860 Msa1314690:five_prime_UTR 40.0%
GTATTTGGGTCACCTTCATA+TGG - chr8_4:13726856-13726875 None:intergenic 40.0%
GATTCACCCTTTACAAGTTC+TGG + chr8_4:13726921-13726940 Msa1314690:intron 40.0%
TCCAAGCACTTGGAATTAGT+AGG + chr8_4:13727186-13727205 Msa1314690:intron 40.0%
! TCCGTTCCAGACTTTCTTTT+TGG + chr8_4:13727295-13727314 Msa1314690:intron 40.0%
! CCTGTGTCTGTTTTCTTTTC+AGG - chr8_4:13727350-13727369 None:intergenic 40.0%
CCTGAAAAGAAAACAGACAC+AGG + chr8_4:13727347-13727366 Msa1314690:intron 40.0%
ACACACAACACAGCAATTAC+GGG - chr8_4:13727384-13727403 None:intergenic 40.0%
CACACACAACACAGCAATTA+CGG - chr8_4:13727385-13727404 None:intergenic 40.0%
ACCTGATGAAATCCTCACTT+TGG + chr8_4:13727467-13727486 Msa1314690:five_prime_UTR 40.0%
TCCAAAGTGAGGATTTCATC+AGG - chr8_4:13727471-13727490 None:intergenic 40.0%
GTCGGTGTAAAAAGCTGAAA+GGG + chr8_4:13727502-13727521 Msa1314690:five_prime_UTR 40.0%
GTGTAAAAAGCTGAAAGGGT+TGG + chr8_4:13727506-13727525 Msa1314690:five_prime_UTR 40.0%
GCTAAGTAGGGATAGAGATT+GGG - chr8_4:13727659-13727678 None:intergenic 40.0%
TGCTAAGTAGGGATAGAGAT+TGG - chr8_4:13727660-13727679 None:intergenic 40.0%
CTCTCATATGTTGAACGGAA+TGG - chr8_4:13727839-13727858 None:intergenic 40.0%
CATTCCGTTCAACATATGAG+AGG + chr8_4:13727837-13727856 Msa1314690:intron 40.0%
TGAGAAGAACAATATGGGAC+TGG + chr8_4:13727911-13727930 Msa1314690:five_prime_UTR 40.0%
CTGACAGTTTCGACACAATT+AGG + chr8_4:13727990-13728009 Msa1314690:CDS 40.0%
TGGACTATACTTTGAGCACA+AGG + chr8_4:13728147-13728166 Msa1314690:intron 40.0%
ATACTTTGAGCACAAGGTTG+TGG + chr8_4:13728153-13728172 Msa1314690:intron 40.0%
CTTGTAAATCTTCAAGAGGG+TGG - chr8_4:13728406-13728425 None:intergenic 40.0%
! AGATTGTTCTGAACCAACTG+AGG + chr8_4:13728481-13728500 Msa1314690:intron 40.0%
TAAAGAGGTCAATCCGAAGT+TGG + chr8_4:13728572-13728591 Msa1314690:intron 40.0%
! GGCAATTTTTGACACAATGC+AGG + chr8_4:13728697-13728716 Msa1314690:intron 40.0%
!! TGTTGATTCGTCCATTTCAG+TGG + chr8_4:13728753-13728772 Msa1314690:CDS 40.0%
AGTAAACTCTGCCACTGAAA+TGG - chr8_4:13728767-13728786 None:intergenic 40.0%
TGTTGAATTGACAGACTCAC+CGG - chr8_4:13728794-13728813 None:intergenic 40.0%
GAATGAGTTGTAAACAGGCA+TGG - chr8_4:13729138-13729157 None:intergenic 40.0%
GCCTGTTTACAACTCATTCT+AGG + chr8_4:13729139-13729158 Msa1314690:intron 40.0%
CCCTAGAATGAGTTGTAAAC+AGG - chr8_4:13729143-13729162 None:intergenic 40.0%
GAAATTGTTGAGGAGCTTCT+TGG + chr8_4:13729264-13729283 Msa1314690:CDS 40.0%
TTCAGCGCAAAACTTCAGTT+TGG - chr8_4:13729569-13729588 None:intergenic 40.0%
TAAGAGATTCGACATTCACG+TGG + chr8_4:13729679-13729698 Msa1314690:CDS 40.0%
!! TCGTCTCGATATTTTTGTGG+GGG + chr8_4:13729712-13729731 Msa1314690:intron 40.0%
! ATGTTCTTTGGAAACAGCTG+AGG + chr8_4:13729806-13729825 Msa1314690:intron 40.0%
! TTTTGTAGCATCAGAGAGCA+TGG + chr8_4:13729870-13729889 Msa1314690:intron 40.0%
GGGATCAACCATATAAAAGG+AGG - chr8_4:13730047-13730066 None:intergenic 40.0%
! CTATCAATAAGGGCATGGTT+TGG - chr8_4:13730417-13730436 None:intergenic 40.0%
TCTAGCTATCAATAAGGGCA+TGG - chr8_4:13730422-13730441 None:intergenic 40.0%
AAATGCCTTGGAGCTGATTA+TGG + chr8_4:13730825-13730844 Msa1314690:CDS 40.0%
ATCTTCCTTTGTTGCTGATG+TGG + chr8_4:13731468-13731487 Msa1314690:CDS 40.0%
AGGTTGCGAGATTATATGAG+TGG + chr8_4:13731628-13731647 Msa1314690:intron 40.0%
GGTTGCGAGATTATATGAGT+GGG + chr8_4:13731629-13731648 Msa1314690:intron 40.0%
!! TATGAGTGGGTTGTGTTATG+AGG + chr8_4:13731642-13731661 Msa1314690:three_prime_UTR 40.0%
!! ATGAGTGGGTTGTGTTATGA+GGG + chr8_4:13731643-13731662 Msa1314690:three_prime_UTR 40.0%
TTTCCACCATCTCAGCATAT+TGG + chr8_4:13731964-13731983 Msa1314690:three_prime_UTR 40.0%
TCATCACCAATATGCTGAGA+TGG - chr8_4:13731973-13731992 None:intergenic 40.0%
! CTTTTGTTGGAAAGGACATC+TGG + chr8_4:13731998-13732017 Msa1314690:three_prime_UTR 40.0%
AAAAGGATTGAGGTTCTCAG+TGG - chr8_4:13732081-13732100 None:intergenic 40.0%
AATTGCAACCAAATGTCCAC+TGG - chr8_4:13732336-13732355 None:intergenic 40.0%
TAGTTTCATCGCCTGCTTAT+AGG + chr8_4:13732406-13732425 Msa1314690:intron 40.0%
! CATAGCTTTGCTTTGTATGC+TGG + chr8_4:13732490-13732509 Msa1314690:intron 40.0%
!! TAATTTGCTAGGACAAGGCA+AGG + chr8_4:13732616-13732635 Msa1314690:intron 40.0%
CAACATTACGTAGTCGTCAA+GGG - chr8_4:13732681-13732700 None:intergenic 40.0%
ACAATGGTGACATTTCGCTT+CGG - chr8_4:13732710-13732729 None:intergenic 40.0%
GCCAATATCATTGTGATGAG+AGG + chr8_4:13732783-13732802 Msa1314690:intron 40.0%
!! AGAAATACCGACTTCATACG+CGG + chr8_4:13733010-13733029 Msa1314690:intron 40.0%
! GTTTTCCATGCTATCACCTT+TGG - chr8_4:13733121-13733140 None:intergenic 40.0%
!! GCTGCGGCCGTATTTAATTT+TGG + chr8_4:13726763-13726782 Msa1314690:intron 45.0%
AAAAACGCTTGGCAAGCTTC+TGG - chr8_4:13726797-13726816 None:intergenic 45.0%
GATGCAGGGCTGTTGTATTT+GGG - chr8_4:13726870-13726889 None:intergenic 45.0%
AGATGCAGGGCTGTTGTATT+TGG - chr8_4:13726871-13726890 None:intergenic 45.0%
TGCAGAATTTGGCAGATGCA+GGG - chr8_4:13726884-13726903 None:intergenic 45.0%
CATCTGCCAAATTCTGCAGA+AGG + chr8_4:13726886-13726905 Msa1314690:five_prime_UTR 45.0%
GTTTGCAACTTCCAAGCACT+TGG + chr8_4:13727176-13727195 Msa1314690:intron 45.0%
GCCTACTAATTCCAAGTGCT+TGG - chr8_4:13727190-13727209 None:intergenic 45.0%
GATCAGCATTGTCCAAAGTG+AGG - chr8_4:13727482-13727501 None:intergenic 45.0%
CTTTGGACAATGCTGATCGT+CGG + chr8_4:13727484-13727503 Msa1314690:five_prime_UTR 45.0%
CGTCGGTGTAAAAAGCTGAA+AGG + chr8_4:13727501-13727520 Msa1314690:five_prime_UTR 45.0%
!! GAAAGGGTTGGCTTTCTCTA+AGG + chr8_4:13727518-13727537 Msa1314690:five_prime_UTR 45.0%
AACTGTCAGTTGCGTTTCAG+AGG - chr8_4:13727979-13727998 None:intergenic 45.0%
TTCTCAGTAGCTGCCAACTT+CGG - chr8_4:13728588-13728607 None:intergenic 45.0%
GTTGAATTGACAGACTCACC+GGG - chr8_4:13728793-13728812 None:intergenic 45.0%
!! GAGCATGGAAGGCTTTGAAT+TGG + chr8_4:13729885-13729904 Msa1314690:CDS 45.0%
AAATGACATGCACACACTGC+GGG - chr8_4:13730121-13730140 None:intergenic 45.0%
CAAATGACATGCACACACTG+CGG - chr8_4:13730122-13730141 None:intergenic 45.0%
TTTCGCCATAATCAGCTCCA+AGG - chr8_4:13730833-13730852 None:intergenic 45.0%
AGAGTCCACATCAGCAACAA+AGG - chr8_4:13731476-13731495 None:intergenic 45.0%
TGAGGGCAACTTACATATCC+AGG + chr8_4:13731660-13731679 Msa1314690:three_prime_UTR 45.0%
TCACCAATATGCTGAGATGG+TGG - chr8_4:13731970-13731989 None:intergenic 45.0%
GCTTTGTATGCTGGATACCA+AGG + chr8_4:13732499-13732518 Msa1314690:intron 45.0%
AAGGGCAACACCATACTCTT+TGG - chr8_4:13732663-13732682 None:intergenic 45.0%
GCAACATTACGTAGTCGTCA+AGG - chr8_4:13732682-13732701 None:intergenic 45.0%
GCGAAATGTCACCATTGTTC+AGG + chr8_4:13732712-13732731 Msa1314690:three_prime_UTR 45.0%
GCGTATGAAGTCGGTATTTC+TGG - chr8_4:13733011-13733030 None:intergenic 45.0%
GGTCACTCTGTTGTAGTTCT+TGG + chr8_4:13733057-13733076 Msa1314690:three_prime_UTR 45.0%
CACTCTGTTGTAGTTCTTGG+AGG + chr8_4:13733060-13733079 Msa1314690:three_prime_UTR 45.0%
CTCTTCCAAAGGTGATAGCA+TGG + chr8_4:13733113-13733132 Msa1314690:three_prime_UTR 45.0%
!! TTTAAAAAATTCTATTTAAA+AGG - chr8_4:13729053-13729072 None:intergenic 5.0%
ATGGTCCGTATAAGCTGGTC+AGG + chr8_4:13726817-13726836 Msa1314690:five_prime_UTR 50.0%
ATCCGCCTGACCAGCTTATA+CGG - chr8_4:13726825-13726844 None:intergenic 50.0%
CTGCAGAATTTGGCAGATGC+AGG - chr8_4:13726885-13726904 None:intergenic 50.0%
! GTAGCATCAGAGAGCATGGA+AGG + chr8_4:13729874-13729893 Msa1314690:intron 50.0%
CTAGAAGCTCTACCCAGAAC+AGG - chr8_4:13730090-13730109 None:intergenic 50.0%
! CTGTTCTGGGTAGAGCTTCT+AGG + chr8_4:13730088-13730107 Msa1314690:intron 50.0%
CGCAGTGTGTGCATGTCATT+TGG + chr8_4:13730120-13730139 Msa1314690:intron 50.0%
TGCATCTGAACTCGCATAGC+TGG - chr8_4:13730928-13730947 None:intergenic 50.0%
GAACTCTCCGCGTATGAAGT+CGG - chr8_4:13733020-13733039 None:intergenic 50.0%
GTCCGTATAAGCTGGTCAGG+CGG + chr8_4:13726820-13726839 Msa1314690:five_prime_UTR 55.0%
GTGGCAGAGTTTACTGCTCC+CGG + chr8_4:13728772-13728791 Msa1314690:CDS 55.0%
GTTCCAGCTGCAAGTGGTAC+TGG + chr8_4:13733036-13733055 Msa1314690:three_prime_UTR 55.0%
TGACCAGTACCACTTGCAGC+TGG - chr8_4:13733042-13733061 None:intergenic 55.0%
CGGAGAGTTCCAGCTGCAAG+TGG + chr8_4:13733030-13733049 Msa1314690:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 13726500 13733436 13726500 ID=Msa1314690;Name=Msa1314690
chr8_4 mRNA 13726500 13733436 13726500 ID=Msa1314690-mRNA-1;Parent=Msa1314690;Name=Msa1314690-mRNA-1;_AED=0.19;_eAED=0.19;_QI=549|0.87|0.94|1|0.62|0.64|17|772|229
chr8_4 exon 13726500 13726724 13726500 ID=Msa1314690-mRNA-1:exon:5181;Parent=Msa1314690-mRNA-1
chr8_4 exon 13726798 13726907 13726798 ID=Msa1314690-mRNA-1:exon:5182;Parent=Msa1314690-mRNA-1
chr8_4 exon 13727035 13727079 13727035 ID=Msa1314690-mRNA-1:exon:5183;Parent=Msa1314690-mRNA-1
chr8_4 exon 13727421 13727539 13727421 ID=Msa1314690-mRNA-1:exon:5184;Parent=Msa1314690-mRNA-1
chr8_4 exon 13727907 13728011 13727907 ID=Msa1314690-mRNA-1:exon:5185;Parent=Msa1314690-mRNA-1
chr8_4 exon 13728719 13728793 13728719 ID=Msa1314690-mRNA-1:exon:5186;Parent=Msa1314690-mRNA-1
chr8_4 exon 13729247 13729287 13729247 ID=Msa1314690-mRNA-1:exon:5187;Parent=Msa1314690-mRNA-1
chr8_4 exon 13729641 13729700 13729641 ID=Msa1314690-mRNA-1:exon:5188;Parent=Msa1314690-mRNA-1
chr8_4 exon 13729878 13729985 13729878 ID=Msa1314690-mRNA-1:exon:5189;Parent=Msa1314690-mRNA-1
chr8_4 exon 13730615 13730693 13730615 ID=Msa1314690-mRNA-1:exon:5190;Parent=Msa1314690-mRNA-1
chr8_4 exon 13730793 13730878 13730793 ID=Msa1314690-mRNA-1:exon:5191;Parent=Msa1314690-mRNA-1
chr8_4 exon 13731237 13731275 13731237 ID=Msa1314690-mRNA-1:exon:5192;Parent=Msa1314690-mRNA-1
chr8_4 exon 13731358 13731539 13731358 ID=Msa1314690-mRNA-1:exon:5193;Parent=Msa1314690-mRNA-1
chr8_4 exon 13731630 13731681 13731630 ID=Msa1314690-mRNA-1:exon:5194;Parent=Msa1314690-mRNA-1
chr8_4 exon 13731907 13732059 13731907 ID=Msa1314690-mRNA-1:exon:5195;Parent=Msa1314690-mRNA-1
chr8_4 exon 13732627 13732733 13732627 ID=Msa1314690-mRNA-1:exon:5196;Parent=Msa1314690-mRNA-1
chr8_4 exon 13733012 13733436 13733012 ID=Msa1314690-mRNA-1:exon:5197;Parent=Msa1314690-mRNA-1
chr8_4 five_prime_UTR 13726500 13726724 13726500 ID=Msa1314690-mRNA-1:five_prime_utr;Parent=Msa1314690-mRNA-1
chr8_4 five_prime_UTR 13726798 13726907 13726798 ID=Msa1314690-mRNA-1:five_prime_utr;Parent=Msa1314690-mRNA-1
chr8_4 five_prime_UTR 13727035 13727079 13727035 ID=Msa1314690-mRNA-1:five_prime_utr;Parent=Msa1314690-mRNA-1
chr8_4 five_prime_UTR 13727421 13727539 13727421 ID=Msa1314690-mRNA-1:five_prime_utr;Parent=Msa1314690-mRNA-1
chr8_4 five_prime_UTR 13727907 13727956 13727907 ID=Msa1314690-mRNA-1:five_prime_utr;Parent=Msa1314690-mRNA-1
chr8_4 CDS 13727957 13728011 13727957 ID=Msa1314690-mRNA-1:cds;Parent=Msa1314690-mRNA-1
chr8_4 CDS 13728719 13728793 13728719 ID=Msa1314690-mRNA-1:cds;Parent=Msa1314690-mRNA-1
chr8_4 CDS 13729247 13729287 13729247 ID=Msa1314690-mRNA-1:cds;Parent=Msa1314690-mRNA-1
chr8_4 CDS 13729641 13729700 13729641 ID=Msa1314690-mRNA-1:cds;Parent=Msa1314690-mRNA-1
chr8_4 CDS 13729878 13729985 13729878 ID=Msa1314690-mRNA-1:cds;Parent=Msa1314690-mRNA-1
chr8_4 CDS 13730615 13730693 13730615 ID=Msa1314690-mRNA-1:cds;Parent=Msa1314690-mRNA-1
chr8_4 CDS 13730793 13730878 13730793 ID=Msa1314690-mRNA-1:cds;Parent=Msa1314690-mRNA-1
chr8_4 CDS 13731237 13731275 13731237 ID=Msa1314690-mRNA-1:cds;Parent=Msa1314690-mRNA-1
chr8_4 CDS 13731358 13731504 13731358 ID=Msa1314690-mRNA-1:cds;Parent=Msa1314690-mRNA-1
chr8_4 three_prime_UTR 13731505 13731539 13731505 ID=Msa1314690-mRNA-1:three_prime_utr;Parent=Msa1314690-mRNA-1
chr8_4 three_prime_UTR 13731630 13731681 13731630 ID=Msa1314690-mRNA-1:three_prime_utr;Parent=Msa1314690-mRNA-1
chr8_4 three_prime_UTR 13731907 13732059 13731907 ID=Msa1314690-mRNA-1:three_prime_utr;Parent=Msa1314690-mRNA-1
chr8_4 three_prime_UTR 13732627 13732733 13732627 ID=Msa1314690-mRNA-1:three_prime_utr;Parent=Msa1314690-mRNA-1
chr8_4 three_prime_UTR 13733012 13733436 13733012 ID=Msa1314690-mRNA-1:three_prime_utr;Parent=Msa1314690-mRNA-1
Gene Sequence

>Msa1314690

ATGGCTGTGCATGCTCTTTCCTCTGAAACGCAACTGACAGTTTCGACACAATTAGGGTGTTCTATTTGTAGTAGTGCTTTGTCTTATACTGTTGATTCGTCCATTTCAGTGGCAGAGTTTACTGCTCCCGGTATGAAGAGGGTTAAAGAAATTGTTGAGGAGCTTCTTGGTGCGGATATATTTTTAGCACCTCAATTACATGCTGCATCTAAGAGATTCGACATTCACGTGCATCAGAGAGCATGGAAGGCTTTGAATTGGACTCAGAAGTTGAGTTTATTGACGATAGTTATCTGTGGAATAACATCTTCATCAGAGATTTCTACAAATAAGCTTGAGGGAAATGATGATGATAATGATTCATGGTTTGTTGAAATTTCTTTTATGGCTCGTGTTTTTTCCTGCATAATTCTATTAGGACTTTTCATGATTGTGAGTTTTATGATATTGAAATGCCTTGGAGCTGATTATGGCGAAATTCACAATGTCATTGAAGCGCAAGAAGAAACAGTGCAGTGCCTTACACCAAGAAAAAAAACTCAGGGATTAAGAATCAAGGGAAACAAATCTCATTTAAAGGCCATGAGTGAAAATAATCATGAAGTTATTGTCAAGTCAAATAGGTCTGATTGTTCATGTGTACAGAGTGTTGAATCTTCCTTTGTTGCTGATGTGGACTCTACATTATGA
Protein sequence

>Msa1314690

MAVHALSSETQLTVSTQLGCSICSSALSYTVDSSISVAEFTAPGMKRVKEIVEELLGADIFLAPQLHAASKRFDIHVHQRAWKALNWTQKLSLLTIVICGITSSSEISTNKLEGNDDDNDSWFVEISFMARVFSCIILLGLFMIVSFMILKCLGADYGEIHNVIEAQEETVQCLTPRKKTQGLRIKGNKSHLKAMSENNHEVIVKSNRSDCSCVQSVESSFVADVDSTL*