AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0318860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0318860 MtrunA17_Chr1g0152861 45.333 150 74 3 38 185 175 318 2.25e-28 110
Msa0318860 MtrunA17_Chr4g0007301 88.372 43 5 0 177 219 26 68 8.46e-20 82.0
Msa0318860 MtrunA17_Chr2g0333531 88.372 43 5 0 177 219 26 68 8.64e-20 82.0
Msa0318860 MtrunA17_Chr1g0179821 56.471 85 24 3 145 229 120 191 8.19e-17 79.0
Msa0318860 MtrunA17_Chr1g0203821 58.209 67 21 2 47 113 198 257 3.39e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 92 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAATGTTTGATTGTATTCT+AGG 0.171441 2_4:-18002059 Msa0318860:three_prime_UTR
TTGTAGTTCTTGGAGGTTTA+TGG 0.186325 2_4:-18002272 Msa0318860:three_prime_UTR
AGATGCAGGGCTGTTGTATT+TGG 0.221313 2_4:+18008449 None:intergenic
GTCAAAATTTACACATTTCT+TGG 0.229453 2_4:+18002134 None:intergenic
TTGACGTTTAGTTCTATAAA+TGG 0.231240 2_4:-18001979 Msa0318860:three_prime_UTR
GACTTGGATTCTTTGGTAAT+TGG 0.240802 2_4:-18002024 Msa0318860:three_prime_UTR
GAATTACCTTCTGCAGAATT+TGG 0.243166 2_4:+18008425 None:intergenic
TTGATTGGACTTGGATTCTT+TGG 0.249753 2_4:-18002031 Msa0318860:three_prime_UTR
CTGACAGTTTCGACACAATT+AGG 0.262315 2_4:-18007333 Msa0318860:intron
AGTCACTCTGTTGTAGTTCT+TGG 0.286493 2_4:-18002282 Msa0318860:three_prime_UTR
GGGAAACAAATCTCATTTAA+AGG 0.291448 2_4:-18003959 Msa0318860:CDS
AAATGCCTTGGAGCTGATTA+TGG 0.312317 2_4:-18004506 Msa0318860:CDS
ACCATAGTTTCAACTTCTTC+AGG 0.316823 2_4:+18003826 None:intergenic
CTGGAATTTGAAGACATATA+TGG 0.318108 2_4:-18003315 Msa0318860:three_prime_UTR
GAAAGGGTTGGCTTTCTCTA+AGG 0.326027 2_4:-18007799 Msa0318860:intron
GATGCAGGGCTGTTGTATTT+GGG 0.335482 2_4:+18008450 None:intergenic
GAAACTGTTGAGGAGCTTCT+TGG 0.346657 2_4:-18006064 Msa0318860:CDS
AGAACATGAGAAGAACAATA+TGG 0.358822 2_4:-18007418 Msa0318860:five_prime_UTR
TTTCCACCATCTCAGCATAT+TGG 0.372188 2_4:-18003368 Msa0318860:three_prime_UTR
CACTCTGTTGTAGTTCTTGG+AGG 0.375629 2_4:-18002279 Msa0318860:three_prime_UTR
GCGAAATGTCACCATTGTTC+AGG 0.377282 2_4:-18002627 Msa0318860:intron
GTATTTGGGTCACCTTCATA+TGG 0.381405 2_4:+18008464 None:intergenic
ACCTGAAGAAGTTGAAACTA+TGG 0.384871 2_4:-18003827 Msa0318860:three_prime_UTR
CTGCAGAATTTGGCAGATGC+AGG 0.386507 2_4:+18008435 None:intergenic
ATCCGCCTAACCAGCTTATA+CGG 0.389595 2_4:+18008495 None:intergenic
GAGCATGGAAGGCTTTGAAT+TGG 0.390401 2_4:-18005443 Msa0318860:CDS
GTTGGAATACAAGTTGTTGT+AGG 0.390451 2_4:-18008614 Msa0318860:intron
GTATTCTAGGAGAATTTGAT+TGG 0.403456 2_4:-18002046 Msa0318860:three_prime_UTR
TAGGAGAATTTGATTGGACT+TGG 0.411989 2_4:-18002040 Msa0318860:three_prime_UTR
ATGGTCCGTATAAGCTGGTT+AGG 0.412611 2_4:-18008500 Msa0318860:five_prime_UTR
CATTACATTATATTCAAGTA+AGG 0.418443 2_4:-18002102 Msa0318860:three_prime_UTR
TATGAGTGGGTTGTGTTATG+AGG 0.422892 2_4:-18003689 Msa0318860:three_prime_UTR
AAGGGCAACACCATACTCTT+TGG 0.424346 2_4:+18002679 None:intergenic
ATCTTCCTTTGTTGCTGATG+TGG 0.424788 2_4:-18003863 Msa0318860:CDS
AAGTTATTGTCAAGTCAAAT+AGG 0.442406 2_4:-18003915 Msa0318860:CDS
AGTAGCAGTTAAGTTGTTGT+GGG 0.451554 2_4:-18008728 Msa0318860:five_prime_UTR
GTGGCAGAGTTTACTGCTCC+TGG 0.452576 2_4:-18006552 Msa0318860:intron
AAGTAGCAGTTAAGTTGTTG+TGG 0.463675 2_4:-18008729 Msa0318860:five_prime_UTR
TTTATGATATTGAAATGCCT+TGG 0.464439 2_4:-18004518 Msa0318860:CDS
ACCTGATGAAATCCTCACTT+TGG 0.468216 2_4:-18007850 Msa0318860:five_prime_UTR
TCCAAAGTGAGGATTTCATC+AGG 0.470978 2_4:+18007849 None:intergenic
AGTAAACTCTGCCACTGAAA+TGG 0.471978 2_4:+18006560 None:intergenic
ATCAAACATTACAAATCAAA+GGG 0.474368 2_4:+18002070 None:intergenic
TTATTGACGATAGTTATTTG+TGG 0.483735 2_4:-18005405 Msa0318860:CDS
TGAGGGCAACTTACATATCC+AGG 0.488191 2_4:-18003671 Msa0318860:intron
AGGCGCTCACCAAGTGTTTG+AGG 0.514089 2_4:-18008824 None:intergenic
GGTACCTAATAGAATTATGC+AGG 0.514795 2_4:+18004652 None:intergenic
AATCAAACATTACAAATCAA+AGG 0.515244 2_4:+18002069 None:intergenic
GACAATTTCAGGATATGTTG+AGG 0.519087 2_4:-18007907 Msa0318860:intron
TACTCTTTGGCAAAACATGT+TGG 0.522651 2_4:+18002692 None:intergenic
GAACATGAGAAGAACAATAT+GGG 0.524942 2_4:-18007417 Msa0318860:five_prime_UTR
CTAATAAACAACAATTGAAG+TGG 0.533165 2_4:+18001944 None:intergenic
GAGTCATTATATTGTTCTTG+AGG 0.535777 2_4:+18002246 None:intergenic
TGCAGAATTTGGCAGATGCA+GGG 0.537199 2_4:+18008436 None:intergenic
AAACTATGGTAAAATTTCAA+AGG 0.539665 2_4:-18003813 Msa0318860:intron
TTTCAGGGATTAAGAATCAA+GGG 0.540034 2_4:-18003979 Msa0318860:intron
CTCTTCCAAAGGTGATAGCA+TGG 0.542728 2_4:-18002226 Msa0318860:three_prime_UTR
AACTGTCAGTTGCGTTTCAG+AGG 0.548651 2_4:+18007347 None:intergenic
TTTGGCAAAACATGTTGGAA+TGG 0.551867 2_4:+18002697 None:intergenic
TTTATTGTGTAGGTATGAAG+AGG 0.552831 2_4:-18006093 Msa0318860:intron
TTATTGTGTAGGTATGAAGA+GGG 0.556937 2_4:-18006092 Msa0318860:intron
AGTGACTGTCAACTATGGCT+AGG 0.558297 2_4:-18007380 Msa0318860:exon
TCATCACCAATATGCTGAGA+TGG 0.559689 2_4:+18003362 None:intergenic
ACAATGGTGACATTTCGCTT+CGG 0.561001 2_4:+18002632 None:intergenic
GTAGCATCAGAGAGCATGGA+AGG 0.563587 2_4:-18005454 Msa0318860:intron
TTAGATGCAGCATGTAATTG+AGG 0.564532 2_4:+18005669 None:intergenic
GAACTCTCCGCGTATGAAGT+CGG 0.566760 2_4:+18002322 None:intergenic
GCAACATTACGTAGTCGTCA+AGG 0.568608 2_4:+18002660 None:intergenic
CAACATTACGTAGTCGTCAA+GGG 0.570337 2_4:+18002661 None:intergenic
ATGAGTGGGTTGTGTTATGA+GGG 0.574980 2_4:-18003688 Msa0318860:three_prime_UTR
GATTTCTACAAATAAGCTTG+AGG 0.582194 2_4:-18005364 Msa0318860:intron
TGAGAAGAACAATATGGGAC+TGG 0.593652 2_4:-18007412 Msa0318860:five_prime_UTR
CGGAGAGTTCTTGCTGCAAG+TGG 0.594736 2_4:-18002309 Msa0318860:three_prime_UTR
CATCTGCCAAATTCTGCAGA+AGG 0.595213 2_4:-18008431 Msa0318860:intron
TAATTTGCTAGGACAAGGCA+AGG 0.597697 2_4:-18002723 Msa0318860:intron
TCACCAATATGCTGAGATGG+TGG 0.601205 2_4:+18003365 None:intergenic
GAGACATTACCTCAAACACT+TGG 0.601792 2_4:+18008815 None:intergenic
AGGTTGCGAGATTATATGAG+TGG 0.605845 2_4:-18003703 Msa0318860:three_prime_UTR
CTTTGGACAATGCTGATCGT+CGG 0.610336 2_4:-18007833 Msa0318860:five_prime_UTR
TGTTGATTCATCCATTTCAG+TGG 0.613474 2_4:-18006571 Msa0318860:CDS
AGAGTCCACATCAGCAACAA+AGG 0.619740 2_4:+18003858 None:intergenic
CAATATAATGACTCTTCCAA+AGG 0.621941 2_4:-18002237 Msa0318860:three_prime_UTR
GGATAGCTGAAACCATATGA+AGG 0.625801 2_4:-18008476 Msa0318860:five_prime_UTR
TTTCGCCATAATCAGCTCCA+AGG 0.635005 2_4:+18004501 None:intergenic
GTCCGTATAAGCTGGTTAGG+CGG 0.648620 2_4:-18008497 Msa0318860:five_prime_UTR
GTAGCAGTTAAGTTGTTGTG+GGG 0.651574 2_4:-18008727 Msa0318860:five_prime_UTR
AGAAATACCGACTTCATACG+CGG 0.663561 2_4:-18002329 Msa0318860:three_prime_UTR
ATGATGATGATAATGATGCA+TGG 0.665315 2_4:-18004709 Msa0318860:CDS
GATCAGCATTGTCCAAAGTG+AGG 0.674747 2_4:+18007838 None:intergenic
GGTTGCGAGATTATATGAGT+GGG 0.681349 2_4:-18003702 Msa0318860:three_prime_UTR
GAGGGTTAAAGAAACTGTTG+AGG 0.709667 2_4:-18006074 Msa0318860:CDS
TAAGAGATTCGACATTCACG+TGG 0.724071 2_4:-18005649 Msa0318860:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAACTCTATAAATTATATT+TGG - chr2_4:18005596-18005615 Msa0318860:intron 10.0%
!!! AACAATAATAGTTTATTTTA+AGG + chr2_4:18006114-18006133 None:intergenic 10.0%
!!! AATAAACTATTATTGTTTTA+TGG - chr2_4:18006117-18006136 Msa0318860:intron 10.0%
!! AATTTAATTGTTTCAAATTC+TGG - chr2_4:18003544-18003563 Msa0318860:intron 15.0%
!!! TTTTTAAAGAATAAGTTACT+TGG - chr2_4:18003666-18003685 Msa0318860:intron 15.0%
!! TTAAACTAAGTAATACTTTA+AGG + chr2_4:18004438-18004457 None:intergenic 15.0%
!!! TTTGATTTTATTTGTTTTTC+AGG - chr2_4:18004781-18004800 Msa0318860:intron 15.0%
!!! ACTAAATATCATTTTAAAAG+GGG + chr2_4:18005481-18005500 None:intergenic 15.0%
!!! GACTAAATATCATTTTAAAA+GGG + chr2_4:18005482-18005501 None:intergenic 15.0%
!!! AATTGGTAAATTTTTATACA+GGG - chr2_4:18005696-18005715 Msa0318860:intron 15.0%
!! TTTAAAAACCATAAGAAATT+TGG + chr2_4:18005890-18005909 None:intergenic 15.0%
!!! TTACTTAATCATACATTTTT+TGG + chr2_4:18005930-18005949 None:intergenic 15.0%
!!! TTTTCAATGTATATTCATTA+TGG - chr2_4:18005986-18006005 Msa0318860:intron 15.0%
!!! ATAAAAGAAGACTATTTTTA+GGG + chr2_4:18007285-18007304 None:intergenic 15.0%
!!! AATAAAAGAAGACTATTTTT+AGG + chr2_4:18007286-18007305 None:intergenic 15.0%
!! ATGTGAAAATATACAAAAAT+TGG + chr2_4:18007325-18007344 None:intergenic 15.0%
!! AAAAACAAAGTTATAATGTA+AGG + chr2_4:18008166-18008185 None:intergenic 15.0%
!! TGGTTATTTGTTCTTTATAT+TGG - chr2_4:18002153-18002172 Msa0318860:three_prime_UTR 20.0%
!! ATTATATCTGGAAATTCAAA+CGG + chr2_4:18002646-18002665 None:intergenic 20.0%
!! AGAAATAAAATATGAAAGCT+TGG + chr2_4:18002995-18003014 None:intergenic 20.0%
!! TTTCTCTCATATATAGTTAT+AGG + chr2_4:18003026-18003045 None:intergenic 20.0%
!!! TAATCTGTAATTTTGATTCA+AGG - chr2_4:18003108-18003127 Msa0318860:intron 20.0%
!!! AATCTGTAATTTTGATTCAA+GGG - chr2_4:18003109-18003128 Msa0318860:intron 20.0%
!! TATATATTAAAACTTAAGCG+AGG + chr2_4:18003750-18003769 None:intergenic 20.0%
!! AAGAACAAAAGTAACAATAA+CGG + chr2_4:18004338-18004357 None:intergenic 20.0%
!!! GTTAAAAGAGTTTACTTTTT+AGG + chr2_4:18004600-18004619 None:intergenic 20.0%
!!! TTAGTGAAATTTTGAAACAA+TGG - chr2_4:18005176-18005195 Msa0318860:intron 20.0%
!!! TAGTGAAATTTTGAAACAAT+GGG - chr2_4:18005177-18005196 Msa0318860:intron 20.0%
!!! GGACTAAATATCATTTTAAA+AGG + chr2_4:18005483-18005502 None:intergenic 20.0%
!! TATGTAAAACTATATGCATT+AGG - chr2_4:18005559-18005578 Msa0318860:intron 20.0%
!!! GAATTGGTAAATTTTTATAC+AGG - chr2_4:18005695-18005714 Msa0318860:intron 20.0%
!!! GTTTGTTGAAATTTCTTTTA+TGG - chr2_4:18006055-18006074 Msa0318860:intron 20.0%
!! GATAAAAAAAAATGTAACGT+AGG + chr2_4:18006154-18006173 None:intergenic 20.0%
!!! TTTTACCTTTTTCATTTTGA+AGG - chr2_4:18006182-18006201 Msa0318860:intron 20.0%
!!! GAATTTCAAAATTTGTTCAA+TGG + chr2_4:18006608-18006627 None:intergenic 20.0%
!! AAACTATGGTAAAATTTCAA+AGG - chr2_4:18006929-18006948 Msa0318860:intron 20.0%
!! AAAAATGATGTAAAGAAATC+AGG + chr2_4:18007017-18007036 None:intergenic 20.0%
!!! AATCCTTTTTATCTAACATT+AGG - chr2_4:18007502-18007521 Msa0318860:intron 20.0%
!! AAACCTAATGTTAGATAAAA+AGG + chr2_4:18007508-18007527 None:intergenic 20.0%
!! TTTATCTAACATTAGGTTTA+TGG - chr2_4:18007509-18007528 Msa0318860:intron 20.0%
!!! ATGAAATATATGGATTACTT+AGG + chr2_4:18007716-18007735 None:intergenic 20.0%
!! ACTATATGTAAAAATAACCT+TGG + chr2_4:18007793-18007812 None:intergenic 20.0%
!!! TTTTGATAAATTTAAACCGA+TGG + chr2_4:18007854-18007873 None:intergenic 20.0%
!! GGTTTAAATTTATCAAAAGT+TGG - chr2_4:18007856-18007875 Msa0318860:five_prime_UTR 20.0%
!! ATGAAAAATCTGAGAATTAT+AGG - chr2_4:18008551-18008570 Msa0318860:intron 20.0%
!! CATTACATTATATTCAAGTA+AGG - chr2_4:18008640-18008659 Msa0318860:five_prime_UTR 20.0%
!! ATCAAACATTACAAATCAAA+GGG + chr2_4:18008675-18008694 None:intergenic 20.0%
!! AATCAAACATTACAAATCAA+AGG + chr2_4:18008676-18008695 None:intergenic 20.0%
!!! TGAATTGATGTTTTAGTGTT+TGG - chr2_4:18002044-18002063 Msa0318860:three_prime_UTR 25.0%
!!! GAATTGATGTTTTAGTGTTT+GGG - chr2_4:18002045-18002064 Msa0318860:three_prime_UTR 25.0%
! TCAGATGCCAAAATTAAATA+CGG + chr2_4:18002198-18002217 None:intergenic 25.0%
!! GAAATATAAGACATTTTGTG+CGG - chr2_4:18002425-18002444 Msa0318860:intron 25.0%
!! GTGAAAATTTTCAATATGCA+AGG - chr2_4:18002483-18002502 Msa0318860:intron 25.0%
!!! ATTTTCTTCTCATACTGATT+TGG + chr2_4:18003183-18003202 None:intergenic 25.0%
! AGTATGAGAAGAAAATGATA+TGG - chr2_4:18003187-18003206 Msa0318860:intron 25.0%
! ACTATGATGTACTAATTAGT+TGG + chr2_4:18003216-18003235 None:intergenic 25.0%
!!! TCATTTGTTGATTCAAATTC+TGG - chr2_4:18003494-18003513 Msa0318860:intron 25.0%
!!! AAGTTACTTGGTTTTCATTT+TGG - chr2_4:18003678-18003697 Msa0318860:three_prime_UTR 25.0%
! ATAAAAATTCATGTTCAGTG+AGG - chr2_4:18003767-18003786 Msa0318860:intron 25.0%
!! TAACTTGTAAATCTTCAAGA+GGG + chr2_4:18003826-18003845 None:intergenic 25.0%
!! ATAACTTGTAAATCTTCAAG+AGG + chr2_4:18003827-18003846 None:intergenic 25.0%
!! GTAAAGAAAGCACATATTTA+TGG + chr2_4:18003957-18003976 None:intergenic 25.0%
!!! TATGGTTTGAGATTTTTCTT+GGG - chr2_4:18004235-18004254 Msa0318860:intron 25.0%
!! AAGTCTAACAATATCTTTTC+AGG - chr2_4:18004266-18004285 Msa0318860:intron 25.0%
!!! AGAAAATCAATCATTTTTGC+AGG + chr2_4:18004297-18004316 None:intergenic 25.0%
!!! GTTTACTTTTTAGGTTGAAA+TGG + chr2_4:18004591-18004610 None:intergenic 25.0%
! GAACTAAATCAAACTTTACA+TGG + chr2_4:18004622-18004641 None:intergenic 25.0%
!! TTCTGTGATTTTTATTGTGT+AGG - chr2_4:18004639-18004658 Msa0318860:intron 25.0%
! TTCAATGTAAAGCAAAACAA+TGG + chr2_4:18004754-18004773 None:intergenic 25.0%
!!! TTTGTTTTTCAGGTTTATGA+AGG - chr2_4:18004791-18004810 Msa0318860:intron 25.0%
! TAAGAACCCTCTTTAATAAA+GGG + chr2_4:18004831-18004850 None:intergenic 25.0%
! GTTCTCATGATATTCATAAA+TGG - chr2_4:18004927-18004946 Msa0318860:intron 25.0%
!!! TATTGTCTCGATATTTTTGT+GGG - chr2_4:18005124-18005143 Msa0318860:intron 25.0%
!! GAAGTATTATGTATGTTCTT+TGG - chr2_4:18005208-18005227 Msa0318860:intron 25.0%
! TTATTGACGATAGTTATTTG+TGG - chr2_4:18005337-18005356 Msa0318860:intron 25.0%
! AAAATTGAGATTGACATTCT+AGG + chr2_4:18005416-18005435 None:intergenic 25.0%
! TAACCTTTCCAAATTTCTTA+TGG - chr2_4:18005879-18005898 Msa0318860:intron 25.0%
! AAACCATAAGAAATTTGGAA+AGG + chr2_4:18005885-18005904 None:intergenic 25.0%
!! TTTTCCTGCATAATTCTATT+AGG - chr2_4:18006086-18006105 Msa0318860:intron 25.0%
! AAAGTCCTTCAAAATGAAAA+AGG + chr2_4:18006190-18006209 None:intergenic 25.0%
! TTTATGATATTGAAATGCCT+TGG - chr2_4:18006224-18006243 Msa0318860:intron 25.0%
! CTATGTATTATGTGCATAAA+AGG - chr2_4:18006433-18006452 Msa0318860:intron 25.0%
! AGATATACACCTATGTATTT+AGG - chr2_4:18006558-18006577 Msa0318860:CDS 25.0%
!!! GAACAAATTTTGAAATTCAG+TGG - chr2_4:18006610-18006629 Msa0318860:intron 25.0%
!! TTCATGATTATTTTCACTCA+TGG + chr2_4:18006809-18006828 None:intergenic 25.0%
! AAGTTATTGTCAAGTCAAAT+AGG - chr2_4:18006827-18006846 Msa0318860:intron 25.0%
! GATATTTATGAGTTTAGATG+TGG - chr2_4:18006953-18006972 Msa0318860:intron 25.0%
! TAAAGAAATCAGGAAAATGA+AGG + chr2_4:18007007-18007026 None:intergenic 25.0%
!!! TTTCTTTACATCATTTTTGC+AGG - chr2_4:18007019-18007038 Msa0318860:intron 25.0%
! AAAAATAATAGAAGCTAACC+TGG + chr2_4:18007092-18007111 None:intergenic 25.0%
!!! GGTTAGCTTCTATTATTTTT+TGG - chr2_4:18007092-18007111 Msa0318860:intron 25.0%
! TTGCCTCTTTAATGATTTAA+TGG - chr2_4:18007157-18007176 Msa0318860:intron 25.0%
! ACACCATTAAATCATTAAAG+AGG + chr2_4:18007163-18007182 None:intergenic 25.0%
! ATGTTAGATAAAAAGGATTG+AGG + chr2_4:18007501-18007520 None:intergenic 25.0%
! AAAGCTATGAAACTGTTATA+AGG + chr2_4:18007882-18007901 None:intergenic 25.0%
! ATGAACAATGAGTGATAAAT+TGG + chr2_4:18007935-18007954 None:intergenic 25.0%
! TTAGCAGTGAAAATATAGTT+TGG + chr2_4:18007971-18007990 None:intergenic 25.0%
!!! ACATTATTTGCTAATTTGCT+AGG - chr2_4:18008008-18008027 Msa0318860:intron 25.0%
! AATAAGAGAAACTGTGAAAT+TGG + chr2_4:18008287-18008306 None:intergenic 25.0%
! AAGGAAAATATCGATAAGTA+AGG - chr2_4:18008310-18008329 Msa0318860:intron 25.0%
!! ATGAATTTTACATCATGCTT+TGG - chr2_4:18008342-18008361 Msa0318860:intron 25.0%
! GTCAAAATTTACACATTTCT+TGG + chr2_4:18008611-18008630 None:intergenic 25.0%
! GTAATGTTTGATTGTATTCT+AGG - chr2_4:18008683-18008702 Msa0318860:five_prime_UTR 25.0%
!!! TTGACGTTTAGTTCTATAAA+TGG - chr2_4:18008763-18008782 Msa0318860:five_prime_UTR 25.0%
! CTAATAAACAACAATTGAAG+TGG + chr2_4:18008801-18008820 None:intergenic 25.0%
AATACAAGTTGTTGTAGGTA+TGG - chr2_4:18002133-18002152 Msa0318860:three_prime_UTR 30.0%
TCTAATCCAGAACTTGTAAA+GGG + chr2_4:18002355-18002374 None:intergenic 30.0%
TTCTAATCCAGAACTTGTAA+AGG + chr2_4:18002356-18002375 None:intergenic 30.0%
!! TTTACAAGTTCTGGATTAGA+AGG - chr2_4:18002355-18002374 Msa0318860:intron 30.0%
GATTAGAAGGATATCTCTAA+TGG - chr2_4:18002368-18002387 Msa0318860:intron 30.0%
TGATGTACTAATTATGCATC+AGG - chr2_4:18002516-18002535 Msa0318860:intron 30.0%
CTTAAGCGCTTAATTATATC+TGG + chr2_4:18002658-18002677 None:intergenic 30.0%
TGAAGCAAAGTTACAGAAAA+AGG + chr2_4:18002751-18002770 None:intergenic 30.0%
TGTGTGAATTTGACAATTTC+AGG - chr2_4:18002824-18002843 Msa0318860:intron 30.0%
ACAGATTATGATGCTAAGTA+GGG + chr2_4:18003096-18003115 None:intergenic 30.0%
TACAGATTATGATGCTAAGT+AGG + chr2_4:18003097-18003116 None:intergenic 30.0%
ACTGAAACTTCAATAAATGC+AGG + chr2_4:18003141-18003160 None:intergenic 30.0%
AGAACATGAGAAGAACAATA+TGG - chr2_4:18003324-18003343 Msa0318860:three_prime_UTR 30.0%
GAACATGAGAAGAACAATAT+GGG - chr2_4:18003325-18003344 Msa0318860:three_prime_UTR 30.0%
!! ATTTTAGTGACTGTCAACTA+TGG - chr2_4:18003357-18003376 Msa0318860:three_prime_UTR 30.0%
ACGCTGTTAAAATTGTTGAA+GGG + chr2_4:18003612-18003631 None:intergenic 30.0%
GGTTGAAAATATATGTGCAA+TGG - chr2_4:18003699-18003718 Msa0318860:three_prime_UTR 30.0%
TGGAACATAAAGTCAGAATT+TGG + chr2_4:18003803-18003822 None:intergenic 30.0%
! TGACATTCAATTGATTCTCT+TGG - chr2_4:18003857-18003876 Msa0318860:CDS 30.0%
! AAGCCTTTTCATTATCAGTA+TGG - chr2_4:18004024-18004043 Msa0318860:intron 30.0%
! TGTCCATACTGATAATGAAA+AGG + chr2_4:18004030-18004049 None:intergenic 30.0%
!!! TGGTCATTTTTTTGTTGATG+TGG - chr2_4:18004057-18004076 Msa0318860:intron 30.0%
!! GATTAGTTCTGATTGCTTTA+GGG - chr2_4:18004079-18004098 Msa0318860:CDS 30.0%
CAAGAAAAATCTCAAACCAT+AGG + chr2_4:18004236-18004255 None:intergenic 30.0%
!! CTATGGTTTGAGATTTTTCT+TGG - chr2_4:18004234-18004253 Msa0318860:intron 30.0%
!! ATGGTTTGAGATTTTTCTTG+GGG - chr2_4:18004236-18004255 Msa0318860:intron 30.0%
TTTATTGTGTAGGTATGAAG+AGG - chr2_4:18004649-18004668 Msa0318860:intron 30.0%
TTATTGTGTAGGTATGAAGA+GGG - chr2_4:18004650-18004669 Msa0318860:intron 30.0%
GTAAGAACCCTCTTTAATAA+AGG + chr2_4:18004832-18004851 None:intergenic 30.0%
! CAAATGATAATGAACGTGTT+AGG + chr2_4:18005032-18005051 None:intergenic 30.0%
ACACGTTCATTATCATTTGT+AGG - chr2_4:18005033-18005052 Msa0318860:intron 30.0%
!! CTATTGTCTCGATATTTTTG+TGG - chr2_4:18005123-18005142 Msa0318860:intron 30.0%
!! ATTGTCTCGATATTTTTGTG+GGG - chr2_4:18005125-18005144 Msa0318860:intron 30.0%
!! ATATTTTTGTGGGGGAATAA+GGG - chr2_4:18005134-18005153 Msa0318860:intron 30.0%
! GAGGTATTATGTATGATCTT+AGG - chr2_4:18005239-18005258 Msa0318860:intron 30.0%
TATGTATGATCTTAGGATGA+TGG - chr2_4:18005246-18005265 Msa0318860:intron 30.0%
GATTTCTACAAATAAGCTTG+AGG - chr2_4:18005378-18005397 Msa0318860:CDS 30.0%
! TTACATGTCCTCCTTTTATA+TGG - chr2_4:18005450-18005469 Msa0318860:CDS 30.0%
AATGATATTTAGTCCTGTTC+CGG - chr2_4:18005488-18005507 Msa0318860:intron 30.0%
GTAAAACTATATGCATTAGG+TGG - chr2_4:18005562-18005581 Msa0318860:intron 30.0%
CATAATCTAGCTACAGAATA+TGG + chr2_4:18005632-18005651 None:intergenic 30.0%
TCTGTAGCTAGATTATGAAT+TGG - chr2_4:18005635-18005654 Msa0318860:intron 30.0%
! ATGACTGAAGTATTACAAGT+TGG - chr2_4:18005663-18005682 Msa0318860:CDS 30.0%
!! AAGTTGGTCTTATGATGAAT+TGG - chr2_4:18005679-18005698 Msa0318860:CDS 30.0%
!! TCGTTTCTAGCTATCAATAA+GGG + chr2_4:18005841-18005860 None:intergenic 30.0%
GTTCCTATGAATTGATTACA+GGG - chr2_4:18006008-18006027 Msa0318860:intron 30.0%
TTTCCCTGTAATCAATTCAT+AGG + chr2_4:18006014-18006033 None:intergenic 30.0%
! ATGATGATGATAATGATGCA+TGG - chr2_4:18006033-18006052 Msa0318860:intron 30.0%
TTATTTAGTGGGATTGAAAG+TGG + chr2_4:18006368-18006387 None:intergenic 30.0%
CATGGTTTCACTTATTTAGT+GGG + chr2_4:18006379-18006398 None:intergenic 30.0%
CACTAAATAAGTGAAACCAT+GGG - chr2_4:18006378-18006397 Msa0318860:intron 30.0%
! GCATTTTCTGTCAAATTTGA+GGG - chr2_4:18006455-18006474 Msa0318860:intron 30.0%
ATACACCTATGTATTTAGGT+AGG - chr2_4:18006562-18006581 Msa0318860:CDS 30.0%
!!! GAGTTTTTTTTCTTGGTGTA+AGG + chr2_4:18006665-18006684 None:intergenic 30.0%
TACACCAAGAAAAAAAACTC+AGG - chr2_4:18006665-18006684 Msa0318860:intron 30.0%
!!! CAAACCTGAGTTTTTTTTCT+TGG + chr2_4:18006672-18006691 None:intergenic 30.0%
AAAACTCAGGTTTGTATTGA+AGG - chr2_4:18006678-18006697 Msa0318860:intron 30.0%
AAACTCAGGTTTGTATTGAA+GGG - chr2_4:18006679-18006698 Msa0318860:intron 30.0%
! TGATCTCTTGCAAATTTTCA+GGG - chr2_4:18006748-18006767 Msa0318860:intron 30.0%
!! TTTTCAGGGATTAAGAATCA+AGG - chr2_4:18006762-18006781 Msa0318860:intron 30.0%
TTTCAGGGATTAAGAATCAA+GGG - chr2_4:18006763-18006782 Msa0318860:intron 30.0%
GGGAAACAAATCTCATTTAA+AGG - chr2_4:18006783-18006802 Msa0318860:intron 30.0%
GTTTCTTTGTAGATGATCTT+AGG - chr2_4:18007133-18007152 Msa0318860:intron 30.0%
AAGAACCAGCATATTGTAAA+CGG + chr2_4:18007226-18007245 None:intergenic 30.0%
!! TGATATTGCTTTTGTTGGAA+AGG - chr2_4:18007400-18007419 Msa0318860:five_prime_UTR 30.0%
CTGGAATTTGAAGACATATA+TGG - chr2_4:18007427-18007446 Msa0318860:intron 30.0%
AATCCATATATTTCATCCAG+TGG - chr2_4:18007720-18007739 Msa0318860:intron 30.0%
!! TTTCTTTTTAGTATGCTCCA+AGG - chr2_4:18007773-18007792 Msa0318860:intron 30.0%
!! TTCAGGTTGAAAAGAAGAAT+GGG - chr2_4:18008132-18008151 Msa0318860:intron 30.0%
GAGTCATTATATTGTTCTTG+AGG + chr2_4:18008499-18008518 None:intergenic 30.0%
CAATATAATGACTCTTCCAA+AGG - chr2_4:18008505-18008524 Msa0318860:five_prime_UTR 30.0%
!! GTGTAAATTTTGACGTCAAA+TGG - chr2_4:18008617-18008636 Msa0318860:five_prime_UTR 30.0%
! GTATTCTAGGAGAATTTGAT+TGG - chr2_4:18008696-18008715 Msa0318860:five_prime_UTR 30.0%
! AAGTAGCAGTTAAGTTGTTG+TGG - chr2_4:18002013-18002032 Msa0318860:three_prime_UTR 35.0%
! AGTAGCAGTTAAGTTGTTGT+GGG - chr2_4:18002014-18002033 Msa0318860:three_prime_UTR 35.0%
! TGTTTTGCAGAAGCTTAAGT+TGG - chr2_4:18002110-18002129 Msa0318860:three_prime_UTR 35.0%
GTTGGAATACAAGTTGTTGT+AGG - chr2_4:18002128-18002147 Msa0318860:three_prime_UTR 35.0%
! TTTTTATGGTCCGTATAAGC+TGG - chr2_4:18002237-18002256 Msa0318860:three_prime_UTR 35.0%
GAATTACCTTCTGCAGAATT+TGG + chr2_4:18002320-18002339 None:intergenic 35.0%
AGAAGGATATCTCTAATGGA+TGG - chr2_4:18002372-18002391 Msa0318860:intron 35.0%
! TTTTGTGCGGTTTGAATTTC+AGG - chr2_4:18002438-18002457 Msa0318860:intron 35.0%
TCCAAAAAGAAAGTCTGGAA+CGG + chr2_4:18002724-18002743 None:intergenic 35.0%
GTTCTTCCAAAAAGAAAGTC+TGG + chr2_4:18002729-18002748 None:intergenic 35.0%
CTGATAAGAAAACAGACACA+GGG - chr2_4:18002773-18002792 Msa0318860:intron 35.0%
TGATAAGAAAACAGACACAG+GGG - chr2_4:18002774-18002793 Msa0318860:intron 35.0%
GACAATTTCAGGATATGTTG+AGG - chr2_4:18002835-18002854 Msa0318860:intron 35.0%
TGTTCCTCTCATATGTTGAA+CGG + chr2_4:18003263-18003282 None:intergenic 35.0%
CGCTGTTAAAATTGTTGAAG+GGG + chr2_4:18003611-18003630 None:intergenic 35.0%
CACGCTGTTAAAATTGTTGA+AGG + chr2_4:18003613-18003632 None:intergenic 35.0%
GACTTAAGAATTACCTCAGT+TGG + chr2_4:18003914-18003933 None:intergenic 35.0%
GCTTTCTTTACAACTCTACT+TGG - chr2_4:18003966-18003985 Msa0318860:CDS 35.0%
TACAACTCTACTTGGTAAAG+AGG - chr2_4:18003974-18003993 Msa0318860:CDS 35.0%
ATCAGTATGGACAACATCAA+TGG - chr2_4:18004037-18004056 Msa0318860:intron 35.0%
!! GGATTAGTTCTGATTGCTTT+AGG - chr2_4:18004078-18004097 Msa0318860:CDS 35.0%
!! CTTTAGGGATGCTTTCATTT+TGG - chr2_4:18004094-18004113 Msa0318860:CDS 35.0%
! GCAATTTTTGACACAATGCA+GGG - chr2_4:18004116-18004135 Msa0318860:intron 35.0%
!! TGTTGATTCATCCATTTCAG+TGG - chr2_4:18004171-18004190 Msa0318860:intron 35.0%
TCTGTCAATTCAACAACCTA+TGG - chr2_4:18004217-18004236 Msa0318860:intron 35.0%
CCTGTTTACAACTCATTCTA+GGG - chr2_4:18004554-18004573 Msa0318860:intron 35.0%
AGGTTTATGAAGGAAACCAA+AGG - chr2_4:18004801-18004820 Msa0318860:intron 35.0%
TTATGAAGGAAACCAAAGGT+TGG - chr2_4:18004805-18004824 Msa0318860:intron 35.0%
TTTAATAAAGGGCCAACCTT+TGG + chr2_4:18004820-18004839 None:intergenic 35.0%
TTCAGTGCAAAACTTCAGTT+TGG + chr2_4:18004983-18005002 None:intergenic 35.0%
CGTTCATTATCATTTGTAGG+CGG - chr2_4:18005036-18005055 Msa0318860:intron 35.0%
TTAGATGCAGCATGTAATTG+AGG + chr2_4:18005076-18005095 None:intergenic 35.0%
!! TTGTCTCGATATTTTTGTGG+GGG - chr2_4:18005126-18005145 Msa0318860:intron 35.0%
!! GATATTTTTGTGGGGGAATA+AGG - chr2_4:18005133-18005152 Msa0318860:intron 35.0%
! ATGTTCTTTGGAAATAGCTG+AGG - chr2_4:18005220-18005239 Msa0318860:intron 35.0%
AAGGGGATCAACCATATAAA+AGG + chr2_4:18005464-18005483 None:intergenic 35.0%
ATGATATTTAGTCCTGTTCC+GGG - chr2_4:18005489-18005508 Msa0318860:intron 35.0%
! TTTTTATACAGGGTTCTCAG+TGG - chr2_4:18005706-18005725 Msa0318860:intron 35.0%
!! GTCGTTTCTAGCTATCAATA+AGG + chr2_4:18005842-18005861 None:intergenic 35.0%
! ATTGATAGCTAGAAACGACT+TGG - chr2_4:18005843-18005862 Msa0318860:intron 35.0%
GGTTCCTATGAATTGATTAC+AGG - chr2_4:18006007-18006026 Msa0318860:intron 35.0%
GGTACCTAATAGAATTATGC+AGG + chr2_4:18006093-18006112 None:intergenic 35.0%
! AACCGAAGCATTATAAAGAG+AGG - chr2_4:18006298-18006317 Msa0318860:intron 35.0%
ATAGCTGGTCATACTAACTA+TGG + chr2_4:18006324-18006343 None:intergenic 35.0%
CCATGGTTTCACTTATTTAG+TGG + chr2_4:18006380-18006399 None:intergenic 35.0%
CCACTAAATAAGTGAAACCA+TGG - chr2_4:18006377-18006396 Msa0318860:intron 35.0%
TCACATTCAAAATTGTCCCA+TGG + chr2_4:18006397-18006416 None:intergenic 35.0%
! GGCATTTTCTGTCAAATTTG+AGG - chr2_4:18006454-18006473 Msa0318860:intron 35.0%
GCATTCCTACCTAAATACAT+AGG + chr2_4:18006570-18006589 None:intergenic 35.0%
! TCAGTGGTTATGTATTTTGC+AGG - chr2_4:18006626-18006645 Msa0318860:intron 35.0%
! GTGATCTCTTGCAAATTTTC+AGG - chr2_4:18006747-18006766 Msa0318860:intron 35.0%
ACCTGAAGAAGTTGAAACTA+TGG - chr2_4:18006915-18006934 Msa0318860:intron 35.0%
ACCATAGTTTCAACTTCTTC+AGG + chr2_4:18006919-18006938 None:intergenic 35.0%
GGTTGTAAAATGTCTTGCTT+TGG - chr2_4:18006974-18006993 Msa0318860:intron 35.0%
ATATTGTAAACGGAATGAGC+TGG + chr2_4:18007216-18007235 None:intergenic 35.0%
TCATTCCGTTTACAATATGC+TGG - chr2_4:18007218-18007237 Msa0318860:intron 35.0%
!! GGTGATGATATTGCTTTTGT+TGG - chr2_4:18007395-18007414 Msa0318860:five_prime_UTR 35.0%
! GGTTGAATTTGAAATCGCAT+TGG - chr2_4:18007530-18007549 Msa0318860:intron 35.0%
ATGTGTGTCATATGTGTGTT+TGG - chr2_4:18007637-18007656 Msa0318860:intron 35.0%
TGTCCACTGGATGAAATATA+TGG + chr2_4:18007726-18007745 None:intergenic 35.0%
TATTTCATCCAGTGGACATT+TGG - chr2_4:18007728-18007747 Msa0318860:intron 35.0%
! CAAAGTGTTTACCTATAAGC+AGG + chr2_4:18007823-18007842 None:intergenic 35.0%
ACACTTTGTATAGACACCAT+CGG - chr2_4:18007835-18007854 Msa0318860:five_prime_UTR 35.0%
GATAAATTGGATTACTGCCT+TGG + chr2_4:18007922-18007941 None:intergenic 35.0%
!! TTTGCTAATTTGCTAGGACA+AGG - chr2_4:18008014-18008033 Msa0318860:intron 35.0%
TTTGGCAAAACATGTTGGAA+TGG + chr2_4:18008048-18008067 None:intergenic 35.0%
TACTCTTTGGCAAAACATGT+TGG + chr2_4:18008053-18008072 None:intergenic 35.0%
! ACATGTTTTGCCAAAGAGTA+TGG - chr2_4:18008053-18008072 Msa0318860:intron 35.0%
! CTTCTTTTCAACCTGAACAA+TGG + chr2_4:18008129-18008148 None:intergenic 35.0%
!! GTTCAGGTTGAAAAGAAGAA+TGG - chr2_4:18008131-18008150 Msa0318860:intron 35.0%
TCCTCTCATCACAATGATAT+TGG + chr2_4:18008190-18008209 None:intergenic 35.0%
GTGATGAGAGGAAAAAAACT+CGG - chr2_4:18008198-18008217 Msa0318860:intron 35.0%
CACAGTTTCTCTTATTGTGA+AGG - chr2_4:18008291-18008310 Msa0318860:intron 35.0%
TTGTAGTTCTTGGAGGTTTA+TGG - chr2_4:18008470-18008489 Msa0318860:five_prime_UTR 35.0%
TAGGAGAATTTGATTGGACT+TGG - chr2_4:18008702-18008721 Msa0318860:five_prime_UTR 35.0%
TTGATTGGACTTGGATTCTT+TGG - chr2_4:18008711-18008730 Msa0318860:five_prime_UTR 35.0%
! GACTTGGATTCTTTGGTAAT+TGG - chr2_4:18008718-18008737 Msa0318860:five_prime_UTR 35.0%
GAGACATTACCTCAAACACT+TGG + chr2_4:18001930-18001949 None:intergenic 40.0%
! GTAGCAGTTAAGTTGTTGTG+GGG - chr2_4:18002015-18002034 Msa0318860:three_prime_UTR 40.0%
! TTGGAGTTTTTGTCTTGCTG+CGG - chr2_4:18002172-18002191 Msa0318860:three_prime_UTR 40.0%
! AAGCTTGCCAAGCGTTTTTA+TGG - chr2_4:18002223-18002242 Msa0318860:three_prime_UTR 40.0%
ATACGGACCATAAAAACGCT+TGG + chr2_4:18002233-18002252 None:intergenic 40.0%
GGATAGCTGAAACCATATGA+AGG - chr2_4:18002266-18002285 Msa0318860:three_prime_UTR 40.0%
GTATTTGGGTCACCTTCATA+TGG + chr2_4:18002281-18002300 None:intergenic 40.0%
GATTCACCCTTTACAAGTTC+TGG - chr2_4:18002346-18002365 Msa0318860:intron 40.0%
TCCAAGCACTTGGAATTAGT+AGG - chr2_4:18002611-18002630 Msa0318860:intron 40.0%
! TCCGTTCCAGACTTTCTTTT+TGG - chr2_4:18002720-18002739 Msa0318860:intron 40.0%
! CCTGTGTCTGTTTTCTTATC+AGG + chr2_4:18002775-18002794 None:intergenic 40.0%
CCTGATAAGAAAACAGACAC+AGG - chr2_4:18002772-18002791 Msa0318860:intron 40.0%
ACACACATCACAGCAATTAC+GGG + chr2_4:18002809-18002828 None:intergenic 40.0%
CACACACATCACAGCAATTA+CGG + chr2_4:18002810-18002829 None:intergenic 40.0%
ACCTGATGAAATCCTCACTT+TGG - chr2_4:18002892-18002911 Msa0318860:intron 40.0%
TCCAAAGTGAGGATTTCATC+AGG + chr2_4:18002896-18002915 None:intergenic 40.0%
GTCGGTGTAAAAAGCTGAAA+GGG - chr2_4:18002927-18002946 Msa0318860:intron 40.0%
GTGTAAAAAGCTGAAAGGGT+TGG - chr2_4:18002931-18002950 Msa0318860:intron 40.0%
GCTAAGTAGGGATAGAGATT+GGG + chr2_4:18003084-18003103 None:intergenic 40.0%
TGCTAAGTAGGGATAGAGAT+TGG + chr2_4:18003085-18003104 None:intergenic 40.0%
CTCTCATATGTTGAACGGAA+TGG + chr2_4:18003258-18003277 None:intergenic 40.0%
CATTCCGTTCAACATATGAG+AGG - chr2_4:18003256-18003275 Msa0318860:intron 40.0%
TGAGAAGAACAATATGGGAC+TGG - chr2_4:18003330-18003349 Msa0318860:three_prime_UTR 40.0%
CTGACAGTTTCGACACAATT+AGG - chr2_4:18003409-18003428 Msa0318860:three_prime_UTR 40.0%
TGGACTATACTTTGAGCACA+AGG - chr2_4:18003564-18003583 Msa0318860:intron 40.0%
ATACTTTGAGCACAAGGTTG+TGG - chr2_4:18003570-18003589 Msa0318860:intron 40.0%
CTTGTAAATCTTCAAGAGGG+TGG + chr2_4:18003823-18003842 None:intergenic 40.0%
! AGATTGTTCTGAACCAACTG+AGG - chr2_4:18003898-18003917 Msa0318860:CDS 40.0%
TAAAGAGGTCAATCCGAAGT+TGG - chr2_4:18003989-18004008 Msa0318860:intron 40.0%
! GGCAATTTTTGACACAATGC+AGG - chr2_4:18004115-18004134 Msa0318860:intron 40.0%
AGTAAACTCTGCCACTGAAA+TGG + chr2_4:18004185-18004204 None:intergenic 40.0%
GCCTGTTTACAACTCATTCT+AGG - chr2_4:18004553-18004572 Msa0318860:intron 40.0%
CCCTAGAATGAGTTGTAAAC+AGG + chr2_4:18004557-18004576 None:intergenic 40.0%
GAGGGTTAAAGAAACTGTTG+AGG - chr2_4:18004668-18004687 Msa0318860:CDS 40.0%
! AGGTTGGCCCTTTATTAAAG+AGG - chr2_4:18004821-18004840 Msa0318860:intron 40.0%
! GGTTGGCCCTTTATTAAAGA+GGG - chr2_4:18004822-18004841 Msa0318860:intron 40.0%
TAAGAGATTCGACATTCACG+TGG - chr2_4:18005093-18005112 Msa0318860:intron 40.0%
! TTTTGTAGCATCAGAGAGCA+TGG - chr2_4:18005284-18005303 Msa0318860:intron 40.0%
GGGATCAACCATATAAAAGG+AGG + chr2_4:18005461-18005480 None:intergenic 40.0%
! CTATCAATAAGGGCATGGTT+TGG + chr2_4:18005831-18005850 None:intergenic 40.0%
TCTAGCTATCAATAAGGGCA+TGG + chr2_4:18005836-18005855 None:intergenic 40.0%
AAATGCCTTGGAGCTGATTA+TGG - chr2_4:18006236-18006255 Msa0318860:intron 40.0%
GGCCTCTCTTTATAATGCTT+CGG + chr2_4:18006303-18006322 None:intergenic 40.0%
ATCTTCCTTTGTTGCTGATG+TGG - chr2_4:18006879-18006898 Msa0318860:intron 40.0%
AGGTTGCGAGATTATATGAG+TGG - chr2_4:18007039-18007058 Msa0318860:intron 40.0%
GGTTGCGAGATTATATGAGT+GGG - chr2_4:18007040-18007059 Msa0318860:intron 40.0%
!! TATGAGTGGGTTGTGTTATG+AGG - chr2_4:18007053-18007072 Msa0318860:intron 40.0%
!! ATGAGTGGGTTGTGTTATGA+GGG - chr2_4:18007054-18007073 Msa0318860:intron 40.0%
TTTCCACCATCTCAGCATAT+TGG - chr2_4:18007374-18007393 Msa0318860:exon 40.0%
TCATCACCAATATGCTGAGA+TGG + chr2_4:18007383-18007402 None:intergenic 40.0%
! CTTTTGTTGGAAAGGACATC+TGG - chr2_4:18007408-18007427 Msa0318860:five_prime_UTR 40.0%
AAAAGGATTGAGGTTCTCAG+TGG + chr2_4:18007491-18007510 None:intergenic 40.0%
AATTGCAACCAAATGTCCAC+TGG + chr2_4:18007739-18007758 None:intergenic 40.0%
TAGTTTCATCGCCTGCTTAT+AGG - chr2_4:18007809-18007828 Msa0318860:five_prime_UTR 40.0%
! CATAGCTTTGCTTTGTATGC+TGG - chr2_4:18007893-18007912 Msa0318860:five_prime_UTR 40.0%
!! TAATTTGCTAGGACAAGGCA+AGG - chr2_4:18008019-18008038 Msa0318860:intron 40.0%
CAACATTACGTAGTCGTCAA+GGG + chr2_4:18008084-18008103 None:intergenic 40.0%
ACAATGGTGACATTTCGCTT+CGG + chr2_4:18008113-18008132 None:intergenic 40.0%
GCCAATATCATTGTGATGAG+AGG - chr2_4:18008186-18008205 Msa0318860:intron 40.0%
!! AGAAATACCGACTTCATACG+CGG - chr2_4:18008413-18008432 Msa0318860:intron 40.0%
AGTCACTCTGTTGTAGTTCT+TGG - chr2_4:18008460-18008479 Msa0318860:five_prime_UTR 40.0%
! GTTTTCCATGCTATCACCTT+TGG + chr2_4:18008524-18008543 None:intergenic 40.0%
!! GCTGCGGCCGTATTTAATTT+TGG - chr2_4:18002188-18002207 Msa0318860:three_prime_UTR 45.0%
AAAAACGCTTGGCAAGCTTC+TGG + chr2_4:18002222-18002241 None:intergenic 45.0%
ATGGTCCGTATAAGCTGGTT+AGG - chr2_4:18002242-18002261 Msa0318860:three_prime_UTR 45.0%
ATCCGCCTAACCAGCTTATA+CGG + chr2_4:18002250-18002269 None:intergenic 45.0%
GATGCAGGGCTGTTGTATTT+GGG + chr2_4:18002295-18002314 None:intergenic 45.0%
AGATGCAGGGCTGTTGTATT+TGG + chr2_4:18002296-18002315 None:intergenic 45.0%
TGCAGAATTTGGCAGATGCA+GGG + chr2_4:18002309-18002328 None:intergenic 45.0%
CATCTGCCAAATTCTGCAGA+AGG - chr2_4:18002311-18002330 Msa0318860:three_prime_UTR 45.0%
GTTTGCAACTTCCAAGCACT+TGG - chr2_4:18002601-18002620 Msa0318860:intron 45.0%
GCCTACTAATTCCAAGTGCT+TGG + chr2_4:18002615-18002634 None:intergenic 45.0%
GATCAGCATTGTCCAAAGTG+AGG + chr2_4:18002907-18002926 None:intergenic 45.0%
CTTTGGACAATGCTGATCGT+CGG - chr2_4:18002909-18002928 Msa0318860:intron 45.0%
CGTCGGTGTAAAAAGCTGAA+AGG - chr2_4:18002926-18002945 Msa0318860:intron 45.0%
!! GAAAGGGTTGGCTTTCTCTA+AGG - chr2_4:18002943-18002962 Msa0318860:intron 45.0%
AGTGACTGTCAACTATGGCT+AGG - chr2_4:18003362-18003381 Msa0318860:three_prime_UTR 45.0%
AACTGTCAGTTGCGTTTCAG+AGG + chr2_4:18003398-18003417 None:intergenic 45.0%
TTCTCAGTAGCTGCCAACTT+CGG + chr2_4:18004005-18004024 None:intergenic 45.0%
GTTGAATTGACAGACTCACC+AGG + chr2_4:18004211-18004230 None:intergenic 45.0%
GAAACTGTTGAGGAGCTTCT+TGG - chr2_4:18004678-18004697 Msa0318860:CDS 45.0%
!! GAGCATGGAAGGCTTTGAAT+TGG - chr2_4:18005299-18005318 Msa0318860:intron 45.0%
AAATGACATGCACACACTGC+GGG + chr2_4:18005535-18005554 None:intergenic 45.0%
CAAATGACATGCACACACTG+CGG + chr2_4:18005536-18005555 None:intergenic 45.0%
TTTCGCCATAATCAGCTCCA+AGG + chr2_4:18006244-18006263 None:intergenic 45.0%
AGAGTCCACATCAGCAACAA+AGG + chr2_4:18006887-18006906 None:intergenic 45.0%
TGAGGGCAACTTACATATCC+AGG - chr2_4:18007071-18007090 Msa0318860:intron 45.0%
TCACCAATATGCTGAGATGG+TGG + chr2_4:18007380-18007399 None:intergenic 45.0%
GCTTTGTATGCTGGATACCA+AGG - chr2_4:18007902-18007921 Msa0318860:intron 45.0%
AAGGGCAACACCATACTCTT+TGG + chr2_4:18008066-18008085 None:intergenic 45.0%
GCAACATTACGTAGTCGTCA+AGG + chr2_4:18008085-18008104 None:intergenic 45.0%
GCGAAATGTCACCATTGTTC+AGG - chr2_4:18008115-18008134 Msa0318860:intron 45.0%
GCGTATGAAGTCGGTATTTC+TGG + chr2_4:18008414-18008433 None:intergenic 45.0%
CACTCTGTTGTAGTTCTTGG+AGG - chr2_4:18008463-18008482 Msa0318860:five_prime_UTR 45.0%
CTCTTCCAAAGGTGATAGCA+TGG - chr2_4:18008516-18008535 Msa0318860:five_prime_UTR 45.0%
!!! TTTTTTAAATTCTATTTAAA+AGG + chr2_4:18004470-18004489 None:intergenic 5.0%
GTCCGTATAAGCTGGTTAGG+CGG - chr2_4:18002245-18002264 Msa0318860:three_prime_UTR 50.0%
CTGCAGAATTTGGCAGATGC+AGG + chr2_4:18002310-18002329 None:intergenic 50.0%
! GTAGCATCAGAGAGCATGGA+AGG - chr2_4:18005288-18005307 Msa0318860:intron 50.0%
GAGATCCTAGAAGCTCTACC+CGG + chr2_4:18005510-18005529 None:intergenic 50.0%
CGCAGTGTGTGCATGTCATT+TGG - chr2_4:18005534-18005553 Msa0318860:intron 50.0%
TGCATCTGAACTCGCATAGC+TGG + chr2_4:18006339-18006358 None:intergenic 50.0%
GAACTCTCCGCGTATGAAGT+CGG + chr2_4:18008423-18008442 None:intergenic 50.0%
GTGGCAGAGTTTACTGCTCC+TGG - chr2_4:18004190-18004209 Msa0318860:intron 55.0%
CTAGAAGCTCTACCCGGAAC+AGG + chr2_4:18005504-18005523 None:intergenic 55.0%
CTGTTCCGGGTAGAGCTTCT+AGG - chr2_4:18005502-18005521 Msa0318860:intron 55.0%
CGGAGAGTTCTTGCTGCAAG+TGG - chr2_4:18008433-18008452 Msa0318860:five_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 18001925 18008839 18001925 ID=Msa0318860;Name=Msa0318860
chr2_4 mRNA 18001925 18008839 18001925 ID=Msa0318860-mRNA-1;Parent=Msa0318860;Name=Msa0318860-mRNA-1;_AED=0.19;_eAED=0.19;_QI=549|0.87|0.94|1|0.62|0.64|17|772|229
chr2_4 exon 18001925 18002349 18001925 ID=Msa0318860-mRNA-1:exon:6774;Parent=Msa0318860-mRNA-1
chr2_4 exon 18002628 18002734 18002628 ID=Msa0318860-mRNA-1:exon:6773;Parent=Msa0318860-mRNA-1
chr2_4 exon 18003295 18003447 18003295 ID=Msa0318860-mRNA-1:exon:6772;Parent=Msa0318860-mRNA-1
chr2_4 exon 18003672 18003723 18003672 ID=Msa0318860-mRNA-1:exon:6771;Parent=Msa0318860-mRNA-1
chr2_4 exon 18003814 18003995 18003814 ID=Msa0318860-mRNA-1:exon:6770;Parent=Msa0318860-mRNA-1
chr2_4 exon 18004078 18004116 18004078 ID=Msa0318860-mRNA-1:exon:6769;Parent=Msa0318860-mRNA-1
chr2_4 exon 18004475 18004560 18004475 ID=Msa0318860-mRNA-1:exon:6768;Parent=Msa0318860-mRNA-1
chr2_4 exon 18004657 18004735 18004657 ID=Msa0318860-mRNA-1:exon:6767;Parent=Msa0318860-mRNA-1
chr2_4 exon 18005365 18005472 18005365 ID=Msa0318860-mRNA-1:exon:6766;Parent=Msa0318860-mRNA-1
chr2_4 exon 18005650 18005709 18005650 ID=Msa0318860-mRNA-1:exon:6765;Parent=Msa0318860-mRNA-1
chr2_4 exon 18006063 18006103 18006063 ID=Msa0318860-mRNA-1:exon:6764;Parent=Msa0318860-mRNA-1
chr2_4 exon 18006553 18006627 18006553 ID=Msa0318860-mRNA-1:exon:6763;Parent=Msa0318860-mRNA-1
chr2_4 exon 18007334 18007438 18007334 ID=Msa0318860-mRNA-1:exon:6762;Parent=Msa0318860-mRNA-1
chr2_4 exon 18007800 18007918 18007800 ID=Msa0318860-mRNA-1:exon:6761;Parent=Msa0318860-mRNA-1
chr2_4 exon 18008260 18008304 18008260 ID=Msa0318860-mRNA-1:exon:6760;Parent=Msa0318860-mRNA-1
chr2_4 exon 18008432 18008541 18008432 ID=Msa0318860-mRNA-1:exon:6759;Parent=Msa0318860-mRNA-1
chr2_4 exon 18008615 18008839 18008615 ID=Msa0318860-mRNA-1:exon:6758;Parent=Msa0318860-mRNA-1
chr2_4 five_prime_UTR 18008615 18008839 18008615 ID=Msa0318860-mRNA-1:five_prime_utr;Parent=Msa0318860-mRNA-1
chr2_4 five_prime_UTR 18008432 18008541 18008432 ID=Msa0318860-mRNA-1:five_prime_utr;Parent=Msa0318860-mRNA-1
chr2_4 five_prime_UTR 18008260 18008304 18008260 ID=Msa0318860-mRNA-1:five_prime_utr;Parent=Msa0318860-mRNA-1
chr2_4 five_prime_UTR 18007800 18007918 18007800 ID=Msa0318860-mRNA-1:five_prime_utr;Parent=Msa0318860-mRNA-1
chr2_4 five_prime_UTR 18007389 18007438 18007389 ID=Msa0318860-mRNA-1:five_prime_utr;Parent=Msa0318860-mRNA-1
chr2_4 CDS 18007334 18007388 18007334 ID=Msa0318860-mRNA-1:cds;Parent=Msa0318860-mRNA-1
chr2_4 CDS 18006553 18006627 18006553 ID=Msa0318860-mRNA-1:cds;Parent=Msa0318860-mRNA-1
chr2_4 CDS 18006063 18006103 18006063 ID=Msa0318860-mRNA-1:cds;Parent=Msa0318860-mRNA-1
chr2_4 CDS 18005650 18005709 18005650 ID=Msa0318860-mRNA-1:cds;Parent=Msa0318860-mRNA-1
chr2_4 CDS 18005365 18005472 18005365 ID=Msa0318860-mRNA-1:cds;Parent=Msa0318860-mRNA-1
chr2_4 CDS 18004657 18004735 18004657 ID=Msa0318860-mRNA-1:cds;Parent=Msa0318860-mRNA-1
chr2_4 CDS 18004475 18004560 18004475 ID=Msa0318860-mRNA-1:cds;Parent=Msa0318860-mRNA-1
chr2_4 CDS 18004078 18004116 18004078 ID=Msa0318860-mRNA-1:cds;Parent=Msa0318860-mRNA-1
chr2_4 CDS 18003849 18003995 18003849 ID=Msa0318860-mRNA-1:cds;Parent=Msa0318860-mRNA-1
chr2_4 three_prime_UTR 18003814 18003848 18003814 ID=Msa0318860-mRNA-1:three_prime_utr;Parent=Msa0318860-mRNA-1
chr2_4 three_prime_UTR 18003672 18003723 18003672 ID=Msa0318860-mRNA-1:three_prime_utr;Parent=Msa0318860-mRNA-1
chr2_4 three_prime_UTR 18003295 18003447 18003295 ID=Msa0318860-mRNA-1:three_prime_utr;Parent=Msa0318860-mRNA-1
chr2_4 three_prime_UTR 18002628 18002734 18002628 ID=Msa0318860-mRNA-1:three_prime_utr;Parent=Msa0318860-mRNA-1
chr2_4 three_prime_UTR 18001925 18002349 18001925 ID=Msa0318860-mRNA-1:three_prime_utr;Parent=Msa0318860-mRNA-1
Gene Sequence

>Msa0318860

ATGGCTAGGCATGCTCTTTCCTCTGAAACGCAACTGACAGTTTCGACACAATTAGGGTGTTCTATTTGTAGTAGTGCTTTGTCTTATACTGTTGATTCATCCATTTCAGTGGCAGAGTTTACTGCTCCTGGTATGAAGAGGGTTAAAGAAACTGTTGAGGAGCTTCTTGGTGCGGATATATTTTTAGCACCTCAATTACATGCTGCATCTAAGAGATTCGACATTCACGTGCATCAGAGAGCATGGAAGGCTTTGAATTGGACTCAGAAGTTGAGTTTATTGACGATAGTTATTTGTGGAATAACATCTTCATCAGAGATTTCTACAAATAAGCTTGAGGGAAATGATGATGATAATGATGCATGGTTTGTTGAAATTTCTTTTATGGCTCGTGTTTTTTCCTGCATAATTCTATTAGGACTTTTCATGATTGTGAGTTTTATGATATTGAAATGCCTTGGAGCTGATTATGGCGAAATTCACAATGTCATTGAAGCGCAAGAAGAAACAGTGCAGTGCCTTACACCAAGAAAAAAAACTCAGGGATTAAGAATCAAGGGAAACAAATCTCATTTAAAGGCCATGAGTGAAAATAATCATGAAGTTATTGTCAAGTCAAATAGGTCTGATTGTTCATGTGTACAGAGTGTTGAATCTTCCTTTGTTGCTGATGTGGACTCTACATTATGA
Protein sequence

>Msa0318860

MARHALSSETQLTVSTQLGCSICSSALSYTVDSSISVAEFTAPGMKRVKETVEELLGADIFLAPQLHAASKRFDIHVHQRAWKALNWTQKLSLLTIVICGITSSSEISTNKLEGNDDDNDAWFVEISFMARVFSCIILLGLFMIVSFMILKCLGADYGEIHNVIEAQEETVQCLTPRKKTQGLRIKGNKSHLKAMSENNHEVIVKSNRSDCSCVQSVESSFVADVDSTL*