Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664580 | AES59366.2 | 75.676 | 74 | 15 | 2 | 56 | 127 | 245 | 317 | 1.41e-24 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664580 | G7I297 | 75.676 | 74 | 15 | 2 | 56 | 127 | 245 | 317 | 6.71e-25 | 109 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0664580 | Msa0943270 | 0.816715 | 4.794547e-52 | -8.615850e-47 |
| Msa0664580 | Msa1314690 | 0.840170 | 1.021566e-57 | -8.615850e-47 |
| Msa0664580 | Msa1454450 | 0.800837 | 1.194992e-48 | -8.615850e-47 |
| Msa0276260 | Msa0664580 | 0.852742 | 3.780006e-61 | -8.615850e-47 |
| Msa0318860 | Msa0664580 | 0.916154 | 2.506102e-85 | -8.615850e-47 |
| Msa0320900 | Msa0664580 | 0.874853 | 4.882045e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664580 | MtrunA17_Chr1g0152861 | 75.676 | 74 | 15 | 2 | 56 | 127 | 246 | 318 | 1.29e-28 | 109 |
| Msa0664580 | MtrunA17_Chr2g0333531 | 86.047 | 43 | 6 | 0 | 119 | 161 | 26 | 68 | 1.23e-19 | 80.1 |
| Msa0664580 | MtrunA17_Chr4g0007301 | 86.047 | 43 | 6 | 0 | 119 | 161 | 26 | 68 | 1.42e-19 | 79.7 |
| Msa0664580 | MtrunA17_Chr1g0179821 | 55.294 | 85 | 25 | 3 | 87 | 171 | 120 | 191 | 3.81e-17 | 78.2 |
| Msa0664580 | MtrunA17_Chr1g0203821 | 88.235 | 34 | 4 | 0 | 22 | 55 | 224 | 257 | 2.23e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAGGGATGCTTTCATTT+TGG | 0.195668 | 4_4:+3596429 | Msa0664580:five_prime_UTR |
| GGATTAGTTCTGATTGCTTT+AGG | 0.217667 | 4_4:+3596413 | Msa0664580:five_prime_UTR |
| GGGAAACAAATCTCATTTAA+AGG | 0.291448 | 4_4:+3599119 | Msa0664580:CDS |
| AAATGCCTTGGAGCTGATTA+TGG | 0.312317 | 4_4:+3598572 | Msa0664580:CDS |
| ACCATAGTTTCAACTTCTTC+AGG | 0.316823 | 4_4:-3599252 | None:intergenic |
| GATTAGTTCTGATTGCTTTA+GGG | 0.349730 | 4_4:+3596414 | Msa0664580:five_prime_UTR |
| ACCTGAAGAAGTTGAAACTA+TGG | 0.384871 | 4_4:+3599251 | Msa0664580:exon |
| GAGCATGGAAGGCTTTGAAT+TGG | 0.390401 | 4_4:+3597635 | Msa0664580:CDS |
| GAAACTGCTGAGGAGCTTCT+TGG | 0.401555 | 4_4:+3597016 | Msa0664580:CDS |
| TATGAGTGGGTTGTGTTATG+AGG | 0.422892 | 4_4:+3599389 | Msa0664580:three_prime_UTR |
| AGTAAACTCTGCCACTGAAA+TGG | 0.424624 | 4_4:-3596517 | None:intergenic |
| ATCTTCCTTTGTTGCTGATG+TGG | 0.424788 | 4_4:+3599215 | Msa0664580:CDS |
| AAGTTATTGTCAAGTCAAAT+AGG | 0.435586 | 4_4:+3599163 | Msa0664580:CDS |
| TTTATGATATTGAAATGCCT+TGG | 0.464439 | 4_4:+3598560 | Msa0664580:CDS |
| TGAGGGCAACTTACATATCC+AGG | 0.488191 | 4_4:+3599407 | Msa0664580:three_prime_UTR |
| GTGGCAGAGTTTACTTCTCA+TGG | 0.498609 | 4_4:+3596525 | Msa0664580:five_prime_UTR |
| GGTACCTAATAGAATTATGC+AGG | 0.514795 | 4_4:-3598426 | None:intergenic |
| AAACTATGGTAAAATTTCAA+AGG | 0.539665 | 4_4:+3599265 | Msa0664580:three_prime_UTR |
| TTTCAGGGATTAAGAATCAA+GGG | 0.540034 | 4_4:+3599099 | Msa0664580:intron |
| TTTATTGTGTAGGTATGAAG+AGG | 0.552831 | 4_4:+3596987 | Msa0664580:intron |
| TTATTGTGTAGGTATGAAGA+GGG | 0.556937 | 4_4:+3596988 | Msa0664580:intron |
| TTGTAGCATCAGAGCATGGA+AGG | 0.573891 | 4_4:+3597624 | Msa0664580:intron |
| ATGAGTGGGTTGTGTTATGA+GGG | 0.574980 | 4_4:+3599390 | Msa0664580:three_prime_UTR |
| GATTTCTACAAATAAGCTTG+AGG | 0.582194 | 4_4:+3597714 | Msa0664580:CDS |
| AGGTTGCGAGATTATATGAG+TGG | 0.605845 | 4_4:+3599375 | Msa0664580:intron |
| TGTTGATTCGTCCATTTCAG+TGG | 0.613839 | 4_4:+3596506 | Msa0664580:five_prime_UTR |
| AGAGTCCACATCAGCAACAA+AGG | 0.619740 | 4_4:-3599220 | None:intergenic |
| AGGTTTATGAAGGAAACCAA+AGG | 0.629007 | 4_4:+3597139 | Msa0664580:intron |
| TTTCGCCATAATCAGCTCCA+AGG | 0.635005 | 4_4:-3598577 | None:intergenic |
| TTATTGACGATAGTTATCTG+TGG | 0.643786 | 4_4:+3597673 | Msa0664580:CDS |
| ATGATGATGATAATGATGCA+TGG | 0.665315 | 4_4:+3598369 | Msa0664580:CDS |
| GGTTGCGAGATTATATGAGT+GGG | 0.681349 | 4_4:+3599376 | Msa0664580:intron |
| GAGGGTTAAAGAAACTGCTG+AGG | 0.698512 | 4_4:+3597006 | Msa0664580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAACTCTATAAATTATATT+TGG | + | chr4_4:3597932-3597951 | Msa0664580:intron | 10.0% |
| !!! | AACAATAATAGTTTATTTTA+AGG | - | chr4_4:3598450-3598469 | None:intergenic | 10.0% |
| !! | TTAAACTAAGTAATACTTTA+AGG | - | chr4_4:3596774-3596793 | None:intergenic | 15.0% |
| !!! | TTTGATTTTATTTGTTTTTC+AGG | + | chr4_4:3597119-3597138 | Msa0664580:intron | 15.0% |
| !!! | ACTAAATATCATTTTAAAAG+GGG | - | chr4_4:3597817-3597836 | None:intergenic | 15.0% |
| !!! | GACTAAATATCATTTTAAAA+GGG | - | chr4_4:3597818-3597837 | None:intergenic | 15.0% |
| !!! | AATTGGTAAATTTTTATACA+GGG | + | chr4_4:3598032-3598051 | Msa0664580:intron | 15.0% |
| !! | TTTAAAAACCATAAGAAATT+TGG | - | chr4_4:3598226-3598245 | None:intergenic | 15.0% |
| !!! | TTACTTAATCATACATTTTT+TGG | - | chr4_4:3598266-3598285 | None:intergenic | 15.0% |
| !!! | TTTTCAATGTATATTCATTA+TGG | + | chr4_4:3598322-3598341 | Msa0664580:intron | 15.0% |
| !! | ATGTGAAAATATACAAAAAT+TGG | - | chr4_4:3599662-3599681 | None:intergenic | 15.0% |
| !! | AAGAACAAAAGTAACAATAA+CGG | - | chr4_4:3596673-3596692 | None:intergenic | 20.0% |
| !!! | GTTAAAAGAGTTTACTTTTT+AGG | - | chr4_4:3596938-3596957 | None:intergenic | 20.0% |
| !! | GAATTAAATCAAACTTTACA+TGG | - | chr4_4:3596960-3596979 | None:intergenic | 20.0% |
| !!! | TTAGTGAAATTTTGAAACAA+TGG | + | chr4_4:3597514-3597533 | Msa0664580:intron | 20.0% |
| !!! | TAGTGAAATTTTGAAACAAT+GGG | + | chr4_4:3597515-3597534 | Msa0664580:intron | 20.0% |
| !!! | GGACTAAATATCATTTTAAA+AGG | - | chr4_4:3597819-3597838 | None:intergenic | 20.0% |
| !! | TATGTAAAACTATATGCATT+AGG | + | chr4_4:3597895-3597914 | Msa0664580:intron | 20.0% |
| !!! | GAATTGGTAAATTTTTATAC+AGG | + | chr4_4:3598031-3598050 | Msa0664580:intron | 20.0% |
| !!! | GTTTGTTGAAATTTCTTTTA+TGG | + | chr4_4:3598391-3598410 | Msa0664580:CDS | 20.0% |
| !! | GATAAAAAAAAATGTAACGT+AGG | - | chr4_4:3598490-3598509 | None:intergenic | 20.0% |
| !!! | TTTTACCTTTTTCATTTTGA+AGG | + | chr4_4:3598518-3598537 | Msa0664580:intron | 20.0% |
| !!! | GAATTTCAAAATTTGTTCAA+TGG | - | chr4_4:3598944-3598963 | None:intergenic | 20.0% |
| !!! | TTTATGATTATTTTCACTCA+TGG | - | chr4_4:3599145-3599164 | None:intergenic | 20.0% |
| !! | AAACTATGGTAAAATTTCAA+AGG | + | chr4_4:3599265-3599284 | Msa0664580:three_prime_UTR | 20.0% |
| !! | AAAAATGATGTAAAGAAATC+AGG | - | chr4_4:3599353-3599372 | None:intergenic | 20.0% |
| !!! | ATAAAAGAAGACCATTTTTA+GGG | - | chr4_4:3599622-3599641 | None:intergenic | 20.0% |
| !!! | AATAAAAGAAGACCATTTTT+AGG | - | chr4_4:3599623-3599642 | None:intergenic | 20.0% |
| !!! | TATGGTTTGAGATTTTTCTT+GGG | + | chr4_4:3596570-3596589 | Msa0664580:intron | 25.0% |
| !! | AAGTCTAACAATATCTTTTC+AGG | + | chr4_4:3596601-3596620 | Msa0664580:intron | 25.0% |
| !!! | AGAAAATCAATCATTTTTGC+AGG | - | chr4_4:3596632-3596651 | None:intergenic | 25.0% |
| !!! | GTTTACTTTTTAGGTTGAAA+TGG | - | chr4_4:3596929-3596948 | None:intergenic | 25.0% |
| !! | TTCTGTGATTTTTATTGTGT+AGG | + | chr4_4:3596977-3596996 | Msa0664580:intron | 25.0% |
| ! | TTCAATGTAAAGCAAAACAA+TGG | - | chr4_4:3597092-3597111 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTCAGGTTTATGA+AGG | + | chr4_4:3597129-3597148 | Msa0664580:intron | 25.0% |
| ! | TAAGAACCCTCTTTAATAAA+GGG | - | chr4_4:3597169-3597188 | None:intergenic | 25.0% |
| ! | GTTCTCATGATATTCATAAA+TGG | + | chr4_4:3597265-3597284 | Msa0664580:intron | 25.0% |
| !! | GAAGTATTATGTATGTTCTT+TGG | + | chr4_4:3597546-3597565 | Msa0664580:intron | 25.0% |
| ! | AAAATTGAGATTGACATTCT+AGG | - | chr4_4:3597752-3597771 | None:intergenic | 25.0% |
| ! | TCTATAGCTAGATTATGAAT+TGG | + | chr4_4:3597971-3597990 | Msa0664580:intron | 25.0% |
| ! | TAACCTTTCCAAATTTCTTA+TGG | + | chr4_4:3598215-3598234 | Msa0664580:intron | 25.0% |
| ! | AAACCATAAGAAATTTGGAA+AGG | - | chr4_4:3598221-3598240 | None:intergenic | 25.0% |
| !! | TTTTCCTGCATAATTCTATT+AGG | + | chr4_4:3598422-3598441 | Msa0664580:CDS | 25.0% |
| ! | AAAGTCCTTCAAAATGAAAA+AGG | - | chr4_4:3598526-3598545 | None:intergenic | 25.0% |
| ! | TTTATGATATTGAAATGCCT+TGG | + | chr4_4:3598560-3598579 | Msa0664580:CDS | 25.0% |
| ! | CTATGTATTATGTGCATAAA+AGG | + | chr4_4:3598769-3598788 | Msa0664580:intron | 25.0% |
| ! | AGATATAGACCTATGTATTT+AGG | + | chr4_4:3598894-3598913 | Msa0664580:intron | 25.0% |
| !!! | GAACAAATTTTGAAATTCAG+TGG | + | chr4_4:3598946-3598965 | Msa0664580:intron | 25.0% |
| ! | AAGTTATTGTCAAGTCAAAT+AGG | + | chr4_4:3599163-3599182 | Msa0664580:CDS | 25.0% |
| ! | GATATTTATGAGTTTAGATG+TGG | + | chr4_4:3599289-3599308 | Msa0664580:intron | 25.0% |
| ! | TAAAGAAATCAGGAAAATGA+AGG | - | chr4_4:3599343-3599362 | None:intergenic | 25.0% |
| !!! | TTTCTTTACATCATTTTTGC+AGG | + | chr4_4:3599355-3599374 | Msa0664580:intron | 25.0% |
| ! | AAAAATAATAGAAGCTAACC+TGG | - | chr4_4:3599428-3599447 | None:intergenic | 25.0% |
| !!! | GGTTAGCTTCTATTATTTTT+TGG | + | chr4_4:3599428-3599447 | Msa0664580:intron | 25.0% |
| !! | TGCCTCTTTAATGATTTTAA+TGG | + | chr4_4:3599494-3599513 | Msa0664580:intron | 25.0% |
| ! | CACCATTAAAATCATTAAAG+AGG | - | chr4_4:3599499-3599518 | None:intergenic | 25.0% |
| !!! | ATTGTTTTGTTCCCTAAAAA+TGG | + | chr4_4:3599608-3599627 | Msa0664580:intron | 25.0% |
| !!! | ATGGTCATTTTTTGTTGATG+TGG | + | chr4_4:3596392-3596411 | Msa0664580:five_prime_UTR | 30.0% |
| !! | GATTAGTTCTGATTGCTTTA+GGG | + | chr4_4:3596414-3596433 | Msa0664580:five_prime_UTR | 30.0% |
| CAAGAAAAATCTCAAACCAT+AGG | - | chr4_4:3596571-3596590 | None:intergenic | 30.0% | |
| !! | CTATGGTTTGAGATTTTTCT+TGG | + | chr4_4:3596569-3596588 | Msa0664580:intron | 30.0% |
| !! | ATGGTTTGAGATTTTTCTTG+GGG | + | chr4_4:3596571-3596590 | Msa0664580:intron | 30.0% |
| TTTATTGTGTAGGTATGAAG+AGG | + | chr4_4:3596987-3597006 | Msa0664580:intron | 30.0% | |
| TTATTGTGTAGGTATGAAGA+GGG | + | chr4_4:3596988-3597007 | Msa0664580:intron | 30.0% | |
| GTAAGAACCCTCTTTAATAA+AGG | - | chr4_4:3597170-3597189 | None:intergenic | 30.0% | |
| ! | CAAATGATAATGAACGTGTT+AGG | - | chr4_4:3597370-3597389 | None:intergenic | 30.0% |
| ACACGTTCATTATCATTTGT+AGG | + | chr4_4:3597371-3597390 | Msa0664580:intron | 30.0% | |
| !! | TATCGTCTCGATATTTTTGT+GGG | + | chr4_4:3597462-3597481 | Msa0664580:intron | 30.0% |
| !! | ATATTTTTGTGGGGGAATAA+GGG | + | chr4_4:3597472-3597491 | Msa0664580:intron | 30.0% |
| ! | GAGGTATTATGTATGATCTT+AGG | + | chr4_4:3597577-3597596 | Msa0664580:intron | 30.0% |
| TATGTATGATCTTAGGATGA+TGG | + | chr4_4:3597584-3597603 | Msa0664580:intron | 30.0% | |
| TTATTGACGATAGTTATCTG+TGG | + | chr4_4:3597673-3597692 | Msa0664580:CDS | 30.0% | |
| GATTTCTACAAATAAGCTTG+AGG | + | chr4_4:3597714-3597733 | Msa0664580:CDS | 30.0% | |
| ! | TTACATGTCCTCCTTTTATA+TGG | + | chr4_4:3597786-3597805 | Msa0664580:intron | 30.0% |
| AATGATATTTAGTCCTGTTC+CGG | + | chr4_4:3597824-3597843 | Msa0664580:intron | 30.0% | |
| GTAAAACTATATGCATTAGG+TGG | + | chr4_4:3597898-3597917 | Msa0664580:intron | 30.0% | |
| ! | ATGACTGAAGTATTACAAGT+TGG | + | chr4_4:3597999-3598018 | Msa0664580:intron | 30.0% |
| !! | AAGTTGGTCTTATGATGAAT+TGG | + | chr4_4:3598015-3598034 | Msa0664580:intron | 30.0% |
| !! | TCGTTTCTAGCTATCAATAA+GGG | - | chr4_4:3598177-3598196 | None:intergenic | 30.0% |
| GTTCCTATGAATTGATTACA+GGG | + | chr4_4:3598344-3598363 | Msa0664580:intron | 30.0% | |
| TTTCCCTGTAATCAATTCAT+AGG | - | chr4_4:3598350-3598369 | None:intergenic | 30.0% | |
| ! | ATGATGATGATAATGATGCA+TGG | + | chr4_4:3598369-3598388 | Msa0664580:CDS | 30.0% |
| TTATTTAGTGGGATTGAAAG+TGG | - | chr4_4:3598704-3598723 | None:intergenic | 30.0% | |
| CATGGTTTCACTTATTTAGT+GGG | - | chr4_4:3598715-3598734 | None:intergenic | 30.0% | |
| CACTAAATAAGTGAAACCAT+GGG | + | chr4_4:3598714-3598733 | Msa0664580:intron | 30.0% | |
| ! | GCATTTTCTGTCAAATTTGA+GGG | + | chr4_4:3598791-3598810 | Msa0664580:intron | 30.0% |
| ATAGACCTATGTATTTAGGT+AGG | + | chr4_4:3598898-3598917 | Msa0664580:intron | 30.0% | |
| !!! | GAGTTTTTTTTCTTGGTGTA+AGG | - | chr4_4:3599001-3599020 | None:intergenic | 30.0% |
| TACACCAAGAAAAAAAACTC+AGG | + | chr4_4:3599001-3599020 | Msa0664580:CDS | 30.0% | |
| !!! | CAAACCTGAGTTTTTTTTCT+TGG | - | chr4_4:3599008-3599027 | None:intergenic | 30.0% |
| AAAACTCAGGTTTGTATTGA+AGG | + | chr4_4:3599014-3599033 | Msa0664580:intron | 30.0% | |
| AAACTCAGGTTTGTATTGAA+GGG | + | chr4_4:3599015-3599034 | Msa0664580:intron | 30.0% | |
| ! | TGATCTCTTGCAAATTTTCA+GGG | + | chr4_4:3599084-3599103 | Msa0664580:intron | 30.0% |
| !! | TTTTCAGGGATTAAGAATCA+AGG | + | chr4_4:3599098-3599117 | Msa0664580:intron | 30.0% |
| TTTCAGGGATTAAGAATCAA+GGG | + | chr4_4:3599099-3599118 | Msa0664580:intron | 30.0% | |
| GGGAAACAAATCTCATTTAA+AGG | + | chr4_4:3599119-3599138 | Msa0664580:CDS | 30.0% | |
| GTTTCTTTGTAGATGATCTT+AGG | + | chr4_4:3599469-3599488 | Msa0664580:intron | 30.0% | |
| AAGAACCAGCATATTGTAAA+CGG | - | chr4_4:3599563-3599582 | None:intergenic | 30.0% | |
| !! | GGATTAGTTCTGATTGCTTT+AGG | + | chr4_4:3596413-3596432 | Msa0664580:five_prime_UTR | 35.0% |
| !! | CTTTAGGGATGCTTTCATTT+TGG | + | chr4_4:3596429-3596448 | Msa0664580:five_prime_UTR | 35.0% |
| ! | GCAATTTTTGACACAATGCA+GGG | + | chr4_4:3596451-3596470 | Msa0664580:five_prime_UTR | 35.0% |
| TCTGTCAATTCAACAACCTA+TGG | + | chr4_4:3596552-3596571 | Msa0664580:intron | 35.0% | |
| CCTGTTTACAACTCATTCTA+GGG | + | chr4_4:3596892-3596911 | Msa0664580:intron | 35.0% | |
| AGGTTTATGAAGGAAACCAA+AGG | + | chr4_4:3597139-3597158 | Msa0664580:intron | 35.0% | |
| TTATGAAGGAAACCAAAGGT+TGG | + | chr4_4:3597143-3597162 | Msa0664580:intron | 35.0% | |
| TTTAATAAAGGGCCAACCTT+TGG | - | chr4_4:3597158-3597177 | None:intergenic | 35.0% | |
| CGTTCATTATCATTTGTAGG+CGG | + | chr4_4:3597374-3597393 | Msa0664580:intron | 35.0% | |
| TTAGATGCAGCATGTAATTG+AGG | - | chr4_4:3597414-3597433 | None:intergenic | 35.0% | |
| !! | CTATCGTCTCGATATTTTTG+TGG | + | chr4_4:3597461-3597480 | Msa0664580:intron | 35.0% |
| !! | ATCGTCTCGATATTTTTGTG+GGG | + | chr4_4:3597463-3597482 | Msa0664580:intron | 35.0% |
| !! | GATATTTTTGTGGGGGAATA+AGG | + | chr4_4:3597471-3597490 | Msa0664580:intron | 35.0% |
| AAGGGGATCAACCATATAAA+AGG | - | chr4_4:3597800-3597819 | None:intergenic | 35.0% | |
| ATGATATTTAGTCCTGTTCC+GGG | + | chr4_4:3597825-3597844 | Msa0664580:intron | 35.0% | |
| ! | TTTTTATACAGGGTTCTCAG+TGG | + | chr4_4:3598042-3598061 | Msa0664580:intron | 35.0% |
| !! | GTCGTTTCTAGCTATCAATA+AGG | - | chr4_4:3598178-3598197 | None:intergenic | 35.0% |
| ! | ATTGATAGCTAGAAACGACT+TGG | + | chr4_4:3598179-3598198 | Msa0664580:intron | 35.0% |
| GGTTCCTATGAATTGATTAC+AGG | + | chr4_4:3598343-3598362 | Msa0664580:intron | 35.0% | |
| GGTACCTAATAGAATTATGC+AGG | - | chr4_4:3598429-3598448 | None:intergenic | 35.0% | |
| ! | AACCGAAGCATTATAAAGAG+AGG | + | chr4_4:3598634-3598653 | Msa0664580:intron | 35.0% |
| ATAGCTGGTCATACTAACTA+TGG | - | chr4_4:3598660-3598679 | None:intergenic | 35.0% | |
| CCATGGTTTCACTTATTTAG+TGG | - | chr4_4:3598716-3598735 | None:intergenic | 35.0% | |
| CCACTAAATAAGTGAAACCA+TGG | + | chr4_4:3598713-3598732 | Msa0664580:intron | 35.0% | |
| TCACATTCAAAATTGTCCCA+TGG | - | chr4_4:3598733-3598752 | None:intergenic | 35.0% | |
| ! | GGCATTTTCTGTCAAATTTG+AGG | + | chr4_4:3598790-3598809 | Msa0664580:intron | 35.0% |
| GCATTCCTACCTAAATACAT+AGG | - | chr4_4:3598906-3598925 | None:intergenic | 35.0% | |
| ! | TCAGTGGTTATGTATTTTGC+AGG | + | chr4_4:3598962-3598981 | Msa0664580:intron | 35.0% |
| ! | GTGATCTCTTGCAAATTTTC+AGG | + | chr4_4:3599083-3599102 | Msa0664580:intron | 35.0% |
| ACCTGAAGAAGTTGAAACTA+TGG | + | chr4_4:3599251-3599270 | Msa0664580:exon | 35.0% | |
| ACCATAGTTTCAACTTCTTC+AGG | - | chr4_4:3599255-3599274 | None:intergenic | 35.0% | |
| GGTTGTAAAATGTCTTGCTT+TGG | + | chr4_4:3599310-3599329 | Msa0664580:intron | 35.0% | |
| ATATTGTAAACGGAATGAGC+TGG | - | chr4_4:3599553-3599572 | None:intergenic | 35.0% | |
| TCATTCCGTTTACAATATGC+TGG | + | chr4_4:3599555-3599574 | Msa0664580:intron | 35.0% | |
| ! | GGCAATTTTTGACACAATGC+AGG | + | chr4_4:3596450-3596469 | Msa0664580:five_prime_UTR | 40.0% |
| !! | TGTTGATTCGTCCATTTCAG+TGG | + | chr4_4:3596506-3596525 | Msa0664580:five_prime_UTR | 40.0% |
| AGTAAACTCTGCCACTGAAA+TGG | - | chr4_4:3596520-3596539 | None:intergenic | 40.0% | |
| GCCTGTTTACAACTCATTCT+AGG | + | chr4_4:3596891-3596910 | Msa0664580:intron | 40.0% | |
| CCCTAGAATGAGTTGTAAAC+AGG | - | chr4_4:3596895-3596914 | None:intergenic | 40.0% | |
| ! | AGGTTGGCCCTTTATTAAAG+AGG | + | chr4_4:3597159-3597178 | Msa0664580:intron | 40.0% |
| ! | GGTTGGCCCTTTATTAAAGA+GGG | + | chr4_4:3597160-3597179 | Msa0664580:intron | 40.0% |
| TTCAGCGCAAAACTTCAGTT+TGG | - | chr4_4:3597321-3597340 | None:intergenic | 40.0% | |
| TAAGAGATTCGACATTCACG+TGG | + | chr4_4:3597431-3597450 | Msa0664580:intron | 40.0% | |
| !! | TCGTCTCGATATTTTTGTGG+GGG | + | chr4_4:3597464-3597483 | Msa0664580:intron | 40.0% |
| ! | ATGTTCTTTGGAAACAGCTG+AGG | + | chr4_4:3597558-3597577 | Msa0664580:intron | 40.0% |
| ! | TGTTTTGTAGCATCAGAGCA+TGG | + | chr4_4:3597620-3597639 | Msa0664580:intron | 40.0% |
| GGGATCAACCATATAAAAGG+AGG | - | chr4_4:3597797-3597816 | None:intergenic | 40.0% | |
| ! | CTATCAATAAGGGCATGGTT+TGG | - | chr4_4:3598167-3598186 | None:intergenic | 40.0% |
| TCTAGCTATCAATAAGGGCA+TGG | - | chr4_4:3598172-3598191 | None:intergenic | 40.0% | |
| AAATGCCTTGGAGCTGATTA+TGG | + | chr4_4:3598572-3598591 | Msa0664580:CDS | 40.0% | |
| GGCCTCTCTTTATAATGCTT+CGG | - | chr4_4:3598639-3598658 | None:intergenic | 40.0% | |
| ATCTTCCTTTGTTGCTGATG+TGG | + | chr4_4:3599215-3599234 | Msa0664580:CDS | 40.0% | |
| AGGTTGCGAGATTATATGAG+TGG | + | chr4_4:3599375-3599394 | Msa0664580:intron | 40.0% | |
| GGTTGCGAGATTATATGAGT+GGG | + | chr4_4:3599376-3599395 | Msa0664580:intron | 40.0% | |
| !! | TATGAGTGGGTTGTGTTATG+AGG | + | chr4_4:3599389-3599408 | Msa0664580:three_prime_UTR | 40.0% |
| !! | ATGAGTGGGTTGTGTTATGA+GGG | + | chr4_4:3599390-3599409 | Msa0664580:three_prime_UTR | 40.0% |
| GTGGCAGAGTTTACTTCTCA+TGG | + | chr4_4:3596525-3596544 | Msa0664580:five_prime_UTR | 45.0% | |
| GAGGGTTAAAGAAACTGCTG+AGG | + | chr4_4:3597006-3597025 | Msa0664580:CDS | 45.0% | |
| TTGTAGCATCAGAGCATGGA+AGG | + | chr4_4:3597624-3597643 | Msa0664580:intron | 45.0% | |
| !! | GAGCATGGAAGGCTTTGAAT+TGG | + | chr4_4:3597635-3597654 | Msa0664580:CDS | 45.0% |
| AAATGACATGCACACACTGC+GGG | - | chr4_4:3597871-3597890 | None:intergenic | 45.0% | |
| CAAATGACATGCACACACTG+CGG | - | chr4_4:3597872-3597891 | None:intergenic | 45.0% | |
| TTTCGCCATAATCAGCTCCA+AGG | - | chr4_4:3598580-3598599 | None:intergenic | 45.0% | |
| AGAGTCCACATCAGCAACAA+AGG | - | chr4_4:3599223-3599242 | None:intergenic | 45.0% | |
| TGAGGGCAACTTACATATCC+AGG | + | chr4_4:3599407-3599426 | Msa0664580:three_prime_UTR | 45.0% | |
| !!! | TTTTTAAAATTCTATTTAAA+AGG | - | chr4_4:3596806-3596825 | None:intergenic | 5.0% |
| GAAACTGCTGAGGAGCTTCT+TGG | + | chr4_4:3597016-3597035 | Msa0664580:CDS | 50.0% | |
| GAGATCCTAGAAGCTCTACC+CGG | - | chr4_4:3597846-3597865 | None:intergenic | 50.0% | |
| CGCAGTGTGTGCATGTCATT+TGG | + | chr4_4:3597870-3597889 | Msa0664580:intron | 50.0% | |
| TGCATCTGAACTCGCATAGC+TGG | - | chr4_4:3598675-3598694 | None:intergenic | 50.0% | |
| CTAGAAGCTCTACCCGGAAC+AGG | - | chr4_4:3597840-3597859 | None:intergenic | 55.0% | |
| CTGTTCCGGGTAGAGCTTCT+AGG | + | chr4_4:3597838-3597857 | Msa0664580:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 3596390 | 3599690 | 3596390 | ID=Msa0664580;Name=Msa0664580 |
| chr4_4 | mRNA | 3596390 | 3599690 | 3596390 | ID=Msa0664580-mRNA-1;Parent=Msa0664580;Name=Msa0664580-mRNA-1;_AED=0.27;_eAED=0.27;_QI=159|0.77|0.7|1|0.77|0.8|10|124|171 |
| chr4_4 | exon | 3596390 | 3596546 | 3596390 | ID=Msa0664580-mRNA-1:exon:1210;Parent=Msa0664580-mRNA-1 |
| chr4_4 | exon | 3596999 | 3597039 | 3596999 | ID=Msa0664580-mRNA-1:exon:1211;Parent=Msa0664580-mRNA-1 |
| chr4_4 | exon | 3597141 | 3597160 | 3597141 | ID=Msa0664580-mRNA-1:exon:1212;Parent=Msa0664580-mRNA-1 |
| chr4_4 | exon | 3597630 | 3597735 | 3597630 | ID=Msa0664580-mRNA-1:exon:1213;Parent=Msa0664580-mRNA-1 |
| chr4_4 | exon | 3598365 | 3598443 | 3598365 | ID=Msa0664580-mRNA-1:exon:1214;Parent=Msa0664580-mRNA-1 |
| chr4_4 | exon | 3598540 | 3598625 | 3598540 | ID=Msa0664580-mRNA-1:exon:1215;Parent=Msa0664580-mRNA-1 |
| chr4_4 | exon | 3598984 | 3599022 | 3598984 | ID=Msa0664580-mRNA-1:exon:1216;Parent=Msa0664580-mRNA-1 |
| chr4_4 | exon | 3599105 | 3599286 | 3599105 | ID=Msa0664580-mRNA-1:exon:1217;Parent=Msa0664580-mRNA-1 |
| chr4_4 | exon | 3599377 | 3599428 | 3599377 | ID=Msa0664580-mRNA-1:exon:1218;Parent=Msa0664580-mRNA-1 |
| chr4_4 | exon | 3599654 | 3599690 | 3599654 | ID=Msa0664580-mRNA-1:exon:1219;Parent=Msa0664580-mRNA-1 |
| chr4_4 | five_prime_UTR | 3596390 | 3596546 | 3596390 | ID=Msa0664580-mRNA-1:five_prime_utr;Parent=Msa0664580-mRNA-1 |
| chr4_4 | five_prime_UTR | 3596999 | 3597000 | 3596999 | ID=Msa0664580-mRNA-1:five_prime_utr;Parent=Msa0664580-mRNA-1 |
| chr4_4 | CDS | 3597001 | 3597039 | 3597001 | ID=Msa0664580-mRNA-1:cds;Parent=Msa0664580-mRNA-1 |
| chr4_4 | CDS | 3597141 | 3597160 | 3597141 | ID=Msa0664580-mRNA-1:cds;Parent=Msa0664580-mRNA-1 |
| chr4_4 | CDS | 3597630 | 3597735 | 3597630 | ID=Msa0664580-mRNA-1:cds;Parent=Msa0664580-mRNA-1 |
| chr4_4 | CDS | 3598365 | 3598443 | 3598365 | ID=Msa0664580-mRNA-1:cds;Parent=Msa0664580-mRNA-1 |
| chr4_4 | CDS | 3598540 | 3598625 | 3598540 | ID=Msa0664580-mRNA-1:cds;Parent=Msa0664580-mRNA-1 |
| chr4_4 | CDS | 3598984 | 3599022 | 3598984 | ID=Msa0664580-mRNA-1:cds;Parent=Msa0664580-mRNA-1 |
| chr4_4 | CDS | 3599105 | 3599251 | 3599105 | ID=Msa0664580-mRNA-1:cds;Parent=Msa0664580-mRNA-1 |
| chr4_4 | three_prime_UTR | 3599252 | 3599286 | 3599252 | ID=Msa0664580-mRNA-1:three_prime_utr;Parent=Msa0664580-mRNA-1 |
| chr4_4 | three_prime_UTR | 3599377 | 3599428 | 3599377 | ID=Msa0664580-mRNA-1:three_prime_utr;Parent=Msa0664580-mRNA-1 |
| chr4_4 | three_prime_UTR | 3599654 | 3599690 | 3599654 | ID=Msa0664580-mRNA-1:three_prime_utr;Parent=Msa0664580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
