AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0279920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0279920 MtrunA17_Chr1g0203051 44.444 603 322 4 76 668 22 621 0.0 572
Msa0279920 MtrunA17_Chr2g0287651 35.123 689 435 5 117 803 66 744 6.62e-148 457
Msa0279920 MtrunA17_Chr2g0308841 70.354 226 67 0 455 680 1 226 1.79e-119 362
Msa0279920 MtrunA17_Chr5g0448761 31.866 568 375 6 128 684 62 628 1.06e-98 325
Msa0279920 MtrunA17_Chr1g0202341 31.327 565 375 6 124 680 49 608 1.15e-96 317
Msa0279920 MtrunA17_Chr2g0324011 30.054 559 374 7 132 680 16 567 1.31e-84 281
Msa0279920 MtrunA17_Chr8g0363841 29.735 565 384 7 136 691 27 587 1.92e-79 270
Msa0279920 MtrunA17_Chr1g0198761 27.865 768 505 20 80 818 1 748 1.36e-78 270
Msa0279920 MtrunA17_Chr1g0203721 27.812 640 412 14 64 680 10 622 1.30e-77 269
Msa0279920 MtrunA17_Chr5g0441581 26.412 655 426 15 132 753 38 669 2.00e-74 256
Msa0279920 MtrunA17_Chr2g0287061 30.629 604 344 18 102 684 155 704 4.39e-72 252
Msa0279920 MtrunA17_Chr6g0458391 28.475 590 371 13 110 680 207 764 2.14e-71 250
Msa0279920 MtrunA17_Chr6g0458391 32.540 126 74 4 131 252 96 214 1.01e-12 72.0
Msa0279920 MtrunA17_Chr2g0296781 28.116 658 423 16 141 772 12 645 5.73e-71 248
Msa0279920 MtrunA17_Chr5g0440451 27.697 621 401 13 132 725 49 648 1.26e-68 245
Msa0279920 MtrunA17_Chr5g0448511 30.227 397 262 4 290 677 3 393 4.60e-67 233
Msa0279920 MtrunA17_Chr3g0118611 29.581 453 307 6 282 725 96 545 7.91e-65 231
Msa0279920 MtrunA17_Chr1g0207551 28.393 560 381 12 131 680 39 588 3.15e-64 230
Msa0279920 MtrunA17_Chr6g0477261 30.243 453 295 8 251 689 4 449 1.85e-63 225
Msa0279920 MtrunA17_Chr3g0082121 26.557 610 402 14 95 680 2 589 5.89e-63 225
Msa0279920 MtrunA17_Chr3g0080351 26.400 625 410 15 76 680 28 622 2.72e-61 223
Msa0279920 MtrunA17_Chr5g0431001 31.265 419 263 8 132 530 67 480 1.06e-59 211
Msa0279920 MtrunA17_Chr2g0329031 25.320 703 476 18 119 796 7 685 3.12e-59 215
Msa0279920 MtrunA17_Chr2g0276841 27.586 580 372 16 132 685 76 633 2.89e-58 211
Msa0279920 MtrunA17_Chr2g0291581 24.042 574 379 13 131 678 76 618 1.07e-54 201
Msa0279920 MtrunA17_Chr1g0196541 29.197 411 276 5 289 689 155 560 4.24e-54 200
Msa0279920 MtrunA17_Chr2g0290391 25.637 667 430 17 76 716 25 651 2.81e-53 197
Msa0279920 MtrunA17_Chr2g0291591 28.163 490 308 11 127 595 65 531 8.74e-53 193
Msa0279920 MtrunA17_Chr2g0294841 26.458 703 454 23 99 765 11 686 5.94e-50 188
Msa0279920 MtrunA17_Chr1g0164591 26.923 312 216 3 207 513 3 307 1.14e-36 141
Msa0279920 MtrunA17_Chr8g0389811 37.989 179 99 1 59 237 29 195 2.59e-35 133
Msa0279920 MtrunA17_Chr1g0171741 41.104 163 93 2 90 252 99 258 2.75e-34 132
Msa0279920 MtrunA17_Chr2g0331371 48.592 142 69 1 90 231 23 160 2.37e-33 127
Msa0279920 MtrunA17_Chr7g0258861 28.716 296 199 6 125 414 11 300 3.06e-33 130
Msa0279920 MtrunA17_Chr6g0473421 46.429 112 56 1 90 201 23 130 1.83e-26 106
Msa0279920 MtrunA17_Chr1g0172931 45.192 104 57 0 105 208 55 158 3.32e-25 102
Msa0279920 MtrunA17_Chr8g0340801 40.000 105 63 0 237 341 1 105 8.63e-23 94.0
Msa0279920 MtrunA17_Chr1g0193171 21.554 399 246 14 287 662 304 658 1.56e-12 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0279920 AT4G38180.1 30.420 572 386 7 122 684 69 637 4.76e-92 307
Msa0279920 AT3G06250.2 29.749 558 337 12 130 680 194 703 2.93e-72 253
Msa0279920 AT3G06250.1 29.749 558 337 12 130 680 194 703 2.93e-72 253
Msa0279920 AT3G06250.3 29.749 558 337 12 130 680 194 703 2.93e-72 253
Msa0279920 AT5G18960.2 29.537 562 336 14 130 680 215 727 2.22e-70 248
Msa0279920 AT5G18960.1 29.537 562 336 14 130 680 215 727 2.22e-70 248
Msa0279920 AT3G22170.2 25.872 688 449 16 72 734 14 665 8.05e-69 244
Msa0279920 AT3G22170.1 25.872 688 449 16 72 734 14 665 8.05e-69 244
Msa0279920 AT4G15090.1 26.821 604 424 10 131 725 56 650 1.21e-67 241
Msa0279920 AT4G15090.5 26.821 604 424 10 131 725 56 650 1.21e-67 241
Msa0279920 AT4G15090.3 26.821 604 424 10 131 725 56 650 1.21e-67 241
Msa0279920 AT4G15090.2 26.821 604 424 10 131 725 56 650 1.21e-67 241
Msa0279920 AT4G15090.4 26.821 604 424 10 131 725 56 650 1.21e-67 241
Msa0279920 AT2G27110.2 26.594 643 426 12 89 725 20 622 5.27e-65 234
Msa0279920 AT2G27110.1 26.594 643 426 12 89 725 20 622 5.27e-65 234
Msa0279920 AT1G76320.3 28.571 560 372 11 131 680 2 543 3.41e-62 223
Msa0279920 AT1G76320.1 28.571 560 372 11 131 680 2 543 6.76e-62 223
Msa0279920 AT1G76320.4 28.571 560 372 11 131 680 2 543 6.76e-62 223
Msa0279920 AT1G76320.2 28.571 560 372 11 131 680 2 543 7.45e-62 223
Msa0279920 AT2G27110.3 28.146 437 305 4 294 725 45 477 2.49e-61 221
Msa0279920 AT1G10240.2 28.916 581 381 16 132 694 54 620 1.98e-60 218
Msa0279920 AT1G10240.1 28.916 581 381 16 132 694 54 620 1.98e-60 218
Msa0279920 AT1G80010.1 29.131 587 375 17 131 691 100 671 1.70e-57 210
Msa0279920 AT2G32250.5 26.895 554 353 11 131 678 43 550 2.74e-56 207
Msa0279920 AT2G32250.2 26.895 554 353 11 131 678 43 550 2.79e-56 208
Msa0279920 AT2G32250.4 26.895 554 353 11 131 678 43 550 2.79e-56 208
Msa0279920 AT2G32250.8 26.895 554 353 11 131 678 2 509 2.88e-56 207
Msa0279920 AT2G32250.7 26.895 554 353 11 131 678 2 509 3.13e-56 207
Msa0279920 AT2G32250.6 26.895 554 353 11 131 678 43 550 3.83e-56 207
Msa0279920 AT2G32250.1 26.895 554 353 11 131 678 43 550 3.83e-56 207
Msa0279920 AT2G32250.3 26.895 554 353 11 131 678 43 550 3.83e-56 207
Msa0279920 AT1G52520.1 26.587 583 356 16 131 678 90 635 9.88e-54 199
Msa0279920 AT4G19990.3 25.307 652 420 14 118 745 13 621 1.57e-51 193
Msa0279920 AT4G19990.4 25.307 652 420 14 118 745 13 621 1.57e-51 193
Msa0279920 AT4G19990.7 25.307 652 420 14 118 745 27 635 1.97e-51 193
Msa0279920 AT4G19990.5 25.307 652 420 14 118 745 13 621 2.07e-51 193
Msa0279920 AT4G19990.6 25.424 649 423 14 118 745 13 621 2.17e-51 193
Msa0279920 AT4G19990.2 25.424 649 423 14 118 745 13 621 2.17e-51 193
Msa0279920 AT4G38170.1 27.297 370 259 4 333 693 46 414 2.25e-50 186
Msa0279920 AT5G28530.1 26.095 571 385 14 132 678 61 618 2.63e-48 183
Msa0279920 AT5G28530.3 25.919 571 382 14 132 678 61 614 3.76e-48 182
Msa0279920 AT5G28530.2 25.919 571 382 14 132 678 61 614 3.76e-48 182
Msa0279920 AT4G19990.1 25.373 603 388 13 164 745 3 564 2.32e-47 180
Msa0279920 AT5G28530.5 24.014 558 342 16 132 676 61 549 6.02e-31 129
Msa0279920 AT5G28530.4 24.194 558 345 16 132 676 61 553 6.29e-31 129

Find 167 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACACCTGGTATCATTTC+TGG 0.155992 2_3:+14168542 None:intergenic
ACACAAATGGTTCACAATAT+TGG 0.219824 2_3:-14167057 Msa0279920:CDS
CTTTGCTTGGTTTGGATCTC+AGG 0.254922 2_3:+14169795 None:intergenic
CACAAATGGTTCACAATATT+GGG 0.257023 2_3:-14167056 Msa0279920:CDS
TCCCTTAGCTTTGCTTGGTT+TGG 0.257469 2_3:+14169787 None:intergenic
CATAATCTATGATGTGCTTT+TGG 0.261343 2_3:+14167832 None:intergenic
TGGCCTTTGATGCAACTTAT+AGG 0.268825 2_3:-14168068 Msa0279920:CDS
TGATCCAATTGTTGTCTTGC+AGG 0.279613 2_3:+14167671 None:intergenic
TGAATAAGTTTGAAGAACTA+TGG 0.283312 2_3:-14167717 Msa0279920:CDS
TCAAAGTTGTTGACTCCTTT+AGG 0.283568 2_3:+14166710 None:intergenic
ATTTCAAATGTTCGTGTCTT+AGG 0.296750 2_3:-14167210 Msa0279920:CDS
GGGAATGCTATAGTCATAAA+TGG 0.304640 2_3:-14168813 Msa0279920:CDS
AAGATGCATGTTGGGTGATA+TGG 0.328276 2_3:-14167743 Msa0279920:CDS
GTATGTGCAACATACATTAA+AGG 0.333195 2_3:+14168174 None:intergenic
CCTGTGTAAAACTAGATTCT+TGG 0.335728 2_3:+14167117 None:intergenic
CCGTCAGTTATTACGGATAA+AGG 0.344378 2_3:+14167892 None:intergenic
TCCGACTATCGTTCCAACTA+TGG 0.344499 2_3:-14167451 Msa0279920:CDS
ATTGCACCATACGTTTGATA+TGG 0.351243 2_3:+14168336 None:intergenic
CCAAGTTCTGAGGGACCGTT+TGG 0.359223 2_3:-14168652 Msa0279920:CDS
AACATCACCGTCAGTTATTA+CGG 0.364947 2_3:+14167885 None:intergenic
CTTCCACCAGGCGTGGCAAT+TGG 0.369060 2_3:+14166791 None:intergenic
AAGGGACTCTTTGTGTTGTT+AGG 0.370328 2_3:-14169770 Msa0279920:intron
CGCAAACTAGTTTGCAATAC+GGG 0.372515 2_3:+14167424 None:intergenic
CAATATTAACATCGAGGAAA+TGG 0.372866 2_3:-14168931 Msa0279920:CDS
ATTTCCTTTGTCTTCCTGAT+TGG 0.374974 2_3:+14168256 None:intergenic
CCAAACGGTCCCTCAGAACT+TGG 0.376804 2_3:+14168652 None:intergenic
CATATTTGTTTGTAAGAAGA+TGG 0.378702 2_3:+14169884 None:intergenic
TTCAGACGAAGGAGATAATA+TGG 0.381516 2_3:-14168901 Msa0279920:CDS
TTGGCCTGCAAGACAACAAT+TGG 0.382041 2_3:-14167675 Msa0279920:CDS
GTTTCAAAGTACTGTGGAAA+TGG 0.394957 2_3:-14167271 Msa0279920:CDS
TGAAGAACTATGGGAAGAAA+TGG 0.400015 2_3:-14167707 Msa0279920:CDS
CATTCATAGCAGTCGCAAAT+TGG 0.400483 2_3:+14167923 None:intergenic
CCACACCTGGTATCATTTCT+GGG 0.408982 2_3:+14168543 None:intergenic
TAAGGCATCTATGAAATTGC+TGG 0.409527 2_3:+14167500 None:intergenic
AGCGATTCATCCGAGTCTAA+TGG 0.410491 2_3:-14168834 Msa0279920:CDS
AGAAAATCTCCCTTGTAAAC+TGG 0.412206 2_3:+14167377 None:intergenic
CAATACGGGTTGACCATAGT+TGG 0.415017 2_3:+14167438 None:intergenic
AGTCGTCGACGAAAGTTTAC+TGG 0.423532 2_3:-14166852 Msa0279920:CDS
TTTAAGATATGACATGAAAT+CGG 0.425674 2_3:+14167765 None:intergenic
TCATGGTATGCAAGGGTAAA+CGG 0.428944 2_3:-14168693 Msa0279920:CDS
TATGTGCAACATACATTAAA+GGG 0.429560 2_3:+14168175 None:intergenic
TGCGCATAACCACGAGTTGT+TGG 0.433550 2_3:-14168451 Msa0279920:CDS
AAGGATTTGTATAACCAATC+AGG 0.433589 2_3:-14168270 Msa0279920:CDS
CACATCATAGATTATGTGCT+TGG 0.435520 2_3:-14167825 Msa0279920:CDS
GAGATAATATGGATGACAAT+GGG 0.436783 2_3:-14168890 Msa0279920:CDS
GGGATTCTCAAATTGCTTCA+AGG 0.437802 2_3:-14167036 Msa0279920:CDS
CTGTGTAAAACTAGATTCTT+GGG 0.438174 2_3:+14167118 None:intergenic
CCTACTTGTGTGAGGACTAA+AGG 0.444636 2_3:-14166827 Msa0279920:CDS
AGAGACATATGTTTGGTTGT+TGG 0.446496 2_3:-14167947 Msa0279920:CDS
CTACTTGTGTGAGGACTAAA+GGG 0.449197 2_3:-14166826 Msa0279920:CDS
GCGATTCATCCGAGTCTAAT+GGG 0.449731 2_3:-14168833 Msa0279920:CDS
ACAGAACAGATTTGTTCATA+AGG 0.452815 2_3:+14169852 None:intergenic
TGTCTTAGGATGGAGTCGTT+TGG 0.452899 2_3:-14167196 Msa0279920:CDS
TATCTTAAAAGATGCATGTT+GGG 0.464075 2_3:-14167751 Msa0279920:CDS
CAAACTGTTGTCTTTGCGAC+AGG 0.466297 2_3:-14167991 Msa0279920:CDS
CTCGAAATCGAAAATATGTA+AGG 0.466417 2_3:+14167482 None:intergenic
TATGTGCTTGGCATCTTCTA+CGG 0.467035 2_3:-14167813 Msa0279920:CDS
CACGAACATTTGAAATCTAC+AGG 0.467229 2_3:+14167217 None:intergenic
AAGAGTCCCTTAGCTTTGCT+TGG 0.468067 2_3:+14169782 None:intergenic
AAATTAGTTTCATCTGACTT+TGG 0.470983 2_3:-14168237 Msa0279920:CDS
AGACGGAAGAGACATATGTT+TGG 0.472860 2_3:-14167954 Msa0279920:CDS
CGGAATGCATCATCGAATGT+TGG 0.473100 2_3:-14167793 Msa0279920:CDS
TTTCCTATAAGTTGCATCAA+AGG 0.473501 2_3:+14168065 None:intergenic
TGTAGTCAGTGTGGTGTGAT+AGG 0.474905 2_3:-14166752 Msa0279920:CDS
TATTCAGTTGTCGAAGGATG+TGG 0.485194 2_3:-14167002 Msa0279920:CDS
GTTGGTATTGATGCTAGCAC+TGG 0.485843 2_3:-14166887 Msa0279920:CDS
ATACTGTAGACAAAGATAAG+AGG 0.486855 2_3:-14168155 Msa0279920:CDS
GGAATGCATCATCGAATGTT+GGG 0.488653 2_3:-14167792 Msa0279920:CDS
CCTTTAGTCCTCACACAAGT+AGG 0.488782 2_3:+14166827 None:intergenic
TTCTCGCTTCCGCCTCTCCA+AGG 0.489867 2_3:+14168566 None:intergenic
CAGCATCGAACCAGTTTACA+AGG 0.491061 2_3:-14167387 Msa0279920:CDS
GGTGCAATGGCTAATTCATC+AGG 0.491612 2_3:-14168321 Msa0279920:CDS
TTGCATATAATTTCTACTCA+TGG 0.494106 2_3:-14168710 Msa0279920:CDS
AGAGGACAGGGGATTGACCT+TGG 0.494325 2_3:-14168583 Msa0279920:CDS
TTAGTTTCATCTGACTTTGG+CGG 0.496753 2_3:-14168234 Msa0279920:CDS
ATTGAAAAGTATAAGAATGT+TGG 0.500015 2_3:-14168366 Msa0279920:CDS
TCGCAAACTAGTTTGCAATA+CGG 0.502777 2_3:+14167423 None:intergenic
ATCCAAACCAAGCAAAGCTA+AGG 0.506402 2_3:-14169789 Msa0279920:CDS
CACCGGAGAAAATAACAAAC+GGG 0.508832 2_3:+14168028 None:intergenic
CAAATTGCTTCAAGGTATGC+GGG 0.516691 2_3:-14167028 Msa0279920:CDS
TTGCCACGCCTGGTGGAAGT+AGG 0.517312 2_3:-14166787 Msa0279920:CDS
GCTTCTATTGTAGGTTATGG+AGG 0.521772 2_3:-14168985 Msa0279920:intron
CAAATGTTCGTGTCTTAGGA+TGG 0.523067 2_3:-14167206 Msa0279920:CDS
AATAAACGATCATGTCCTAA+AGG 0.523227 2_3:-14166725 Msa0279920:CDS
ATTAATGAAGATGATGAAGA+AGG 0.525000 2_3:-14166653 Msa0279920:CDS
GTCGAAGGATGTGGCTGAGA+GGG 0.529678 2_3:-14166993 Msa0279920:CDS
CATAACCACGAGTTGTTGGA+TGG 0.530438 2_3:-14168447 Msa0279920:CDS
ACACCGGAGAAAATAACAAA+CGG 0.530564 2_3:+14168027 None:intergenic
GAATAAGTTTGAAGAACTAT+GGG 0.530569 2_3:-14167716 Msa0279920:CDS
ATTTCTACTCATGGTATGCA+AGG 0.531446 2_3:-14168701 Msa0279920:CDS
CTGTCGCAAAGACAACAGTT+TGG 0.533935 2_3:+14167992 None:intergenic
TCTAATCCAATTGCCACGCC+TGG 0.535553 2_3:-14166797 Msa0279920:CDS
TAGACATTGTTTCGAAGCGT+TGG 0.536274 2_3:-14168494 Msa0279920:CDS
GCTGTTAGCTTTCTATGTGC+CGG 0.541367 2_3:+14168405 None:intergenic
CAAGTTCTGAGGGACCGTTT+GGG 0.542763 2_3:-14168651 Msa0279920:CDS
AATCCAATTGCCACGCCTGG+TGG 0.547004 2_3:-14166794 Msa0279920:CDS
GTTATGCGCAAATTCAAATA+CGG 0.547080 2_3:+14168464 None:intergenic
GTGAACTGTCACATGGATGA+AGG 0.551488 2_3:+14169273 None:intergenic
TTGGTATTGATGCTAGCACT+GGG 0.551813 2_3:-14166886 Msa0279920:CDS
TTGTTGGATGGTTTGCTATG+TGG 0.558740 2_3:-14168435 Msa0279920:CDS
CAATTTGCGACTGCTATGAA+TGG 0.559494 2_3:-14167922 Msa0279920:CDS
TCTATTGTAGGTTATGGAGG+AGG 0.559706 2_3:-14168982 Msa0279920:intron
GCATCAATACCAACAGCTGT+TGG 0.560993 2_3:+14166896 None:intergenic
GCTGCAGAACATTACCCAAA+CGG 0.563552 2_3:+14168637 None:intergenic
TGAAATTCAAGAGATGTCCA+TGG 0.566346 2_3:-14167308 Msa0279920:CDS
GTTCGAGCAAGATACACAAA+TGG 0.566756 2_3:-14167070 Msa0279920:CDS
TGCGACTGCTATGAATGGTA+AGG 0.571209 2_3:-14167917 Msa0279920:CDS
AAGAATAAACCAACAGCTGT+TGG 0.571265 2_3:-14166905 Msa0279920:CDS
GGAGATAATATGGATGACAA+TGG 0.571879 2_3:-14168891 Msa0279920:CDS
TTCGGAAGACCCAAGTTCTG+AGG 0.573488 2_3:-14168662 Msa0279920:CDS
TCAAATTGCTTCAAGGTATG+CGG 0.574162 2_3:-14167029 Msa0279920:CDS
TTTCTGTAGATGTAGTTGAA+AGG 0.575027 2_3:-14168755 Msa0279920:CDS
ATATCAAACGTATGGTGCAA+TGG 0.580935 2_3:-14168334 Msa0279920:CDS
TTTGGTTGTTGAATGAGAAG+AGG 0.581188 2_3:+14169960 None:intergenic
CTTTAGTCCTCACACAAGTA+GGG 0.582163 2_3:+14166828 None:intergenic
GGGGATTGACCTTGGAGAGG+CGG 0.582190 2_3:-14168575 Msa0279920:CDS
CCACACTGACTACATGATTG+AGG 0.582317 2_3:+14166761 None:intergenic
GAGAACCCAGAAATGATACC+AGG 0.586155 2_3:-14168548 Msa0279920:CDS
GTAAGACCATATCAAACGTA+TGG 0.586746 2_3:-14168342 Msa0279920:CDS
AACTTTGTAGATAGAACCCA+TGG 0.589394 2_3:+14167291 None:intergenic
ACCATAGTTGGAACGATAGT+CGG 0.596621 2_3:+14167450 None:intergenic
GCTATAGTCATAAATGGCAT+CGG 0.596967 2_3:-14168807 Msa0279920:CDS
CGAACCACATCTCGGTGTGA+GGG 0.597328 2_3:-14167580 Msa0279920:CDS
ACGCCTACTTCCACCAGGCG+TGG 0.597902 2_3:+14166784 None:intergenic
GTAAAACTAGATTCTTGGGA+AGG 0.598080 2_3:+14167122 None:intergenic
GAGGGTTTATCAAGATGTAG+AGG 0.601064 2_3:-14166975 Msa0279920:CDS
CCGTGTATGTATTGAAAATG+TGG 0.602256 2_3:-14169251 Msa0279920:intron
GGGAATTATTCAGTTGTCGA+AGG 0.603195 2_3:-14167008 Msa0279920:CDS
TGGGCGACTGCTCATATCAA+AGG 0.603639 2_3:-14167622 Msa0279920:CDS
GAAATTCAAGAGATGTCCAT+GGG 0.603913 2_3:-14167307 Msa0279920:CDS
ACGAACCACATCTCGGTGTG+AGG 0.609021 2_3:-14167581 Msa0279920:CDS
ATGCATGTTGGGTGATATGG+AGG 0.613251 2_3:-14167740 Msa0279920:CDS
TCGGAAGACCCAAGTTCTGA+GGG 0.617413 2_3:-14168661 Msa0279920:CDS
ACAGCAATAATATGATCGCA+AGG 0.619104 2_3:+14167169 None:intergenic
CAAACGGTCCCTCAGAACTT+GGG 0.622569 2_3:+14168653 None:intergenic
TCCAAACCAAGCAAAGCTAA+GGG 0.624671 2_3:-14169788 Msa0279920:CDS
ATATCTTAAAAGATGCATGT+TGG 0.624704 2_3:-14167752 Msa0279920:CDS
CAGGTATACGAACCACATCT+CGG 0.625104 2_3:-14167588 Msa0279920:CDS
GCAATGGCTAATTCATCAGG+TGG 0.625760 2_3:-14168318 Msa0279920:CDS
TACTGGACCCTACTTGTGTG+AGG 0.626363 2_3:-14166835 Msa0279920:CDS
TTTCTACTCATGGTATGCAA+GGG 0.627306 2_3:-14168700 Msa0279920:CDS
ATGGACGAAGCTTCAGACGA+AGG 0.631163 2_3:-14168912 Msa0279920:CDS
TAAACCCTCACACCGAGATG+TGG 0.631791 2_3:+14167576 None:intergenic
CCTTTATCCGTAATAACTGA+CGG 0.633304 2_3:-14167892 Msa0279920:CDS
AGGTTTAGTTACGAGAGAGA+CGG 0.633832 2_3:-14167971 Msa0279920:CDS
TACAAAGTTTCAAAGTACTG+TGG 0.634037 2_3:-14167277 Msa0279920:CDS
TTGGTTATGATGATTAACAC+CGG 0.637737 2_3:+14168011 None:intergenic
ACTGTGGAAATGGAAGTGTC+TGG 0.638067 2_3:-14167261 Msa0279920:CDS
TATAGCATTCCCATTAGACT+CGG 0.641750 2_3:+14168824 None:intergenic
GAGGGTTTACATAGTCACAT+AGG 0.642304 2_3:-14167562 Msa0279920:CDS
GCTTCGAAACAATGTCTATG+TGG 0.645082 2_3:+14168499 None:intergenic
AATGGGGCTAATGAGTGTGA+TGG 0.645283 2_3:-14168873 Msa0279920:CDS
CCCAGAAATGATACCAGGTG+TGG 0.648094 2_3:-14168543 Msa0279920:CDS
TGTTGAATGAGAAGAGGACA+AGG 0.649278 2_3:+14169966 None:intergenic
TGTGTGAGGACTAAAGGGTG+TGG 0.651598 2_3:-14166821 Msa0279920:CDS
TGTCGAAGGATGTGGCTGAG+AGG 0.652941 2_3:-14166994 Msa0279920:CDS
TGAGGACGCCTACTTCCACC+AGG 0.673688 2_3:+14166779 None:intergenic
ATAACCAATCAGGAAGACAA+AGG 0.684750 2_3:-14168260 Msa0279920:CDS
ACAGGGGATTGACCTTGGAG+AGG 0.687350 2_3:-14168578 Msa0279920:CDS
AGATAATATGGATGACAATG+GGG 0.688595 2_3:-14168889 Msa0279920:CDS
CCTCAATCATGTAGTCAGTG+TGG 0.690892 2_3:-14166761 Msa0279920:CDS
ATACACGGTGAACTGTCACA+TGG 0.695754 2_3:+14169266 None:intergenic
GCAAACCATCCAACAACTCG+TGG 0.699078 2_3:+14168442 None:intergenic
CACTAAGAAAATCTACAATG+CGG 0.712293 2_3:+14166945 None:intergenic
AGCATCGAACCAGTTTACAA+GGG 0.716912 2_3:-14167386 Msa0279920:CDS
TAATGACAATATTAACATCG+AGG 0.732342 2_3:-14168937 Msa0279920:CDS
TGGTATTGATGCTAGCACTG+GGG 0.762460 2_3:-14166885 Msa0279920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTACAGATTTTTTTTTAAA+TGG + chr2_3:14167141-14167160 None:intergenic 15.0%
!!! TTTTTTAGAATCAATAATCT+GGG + chr2_3:14167241-14167260 None:intergenic 15.0%
!!! TTTTTTTAGAATCAATAATC+TGG + chr2_3:14167242-14167261 None:intergenic 15.0%
!! AATAAATTGATGCTAATTAT+TGG - chr2_3:14167261-14167280 Msa0279920:CDS 15.0%
!!! TATCTCTTTTTAATTAATGT+GGG + chr2_3:14167407-14167426 None:intergenic 15.0%
!!! TTATCTCTTTTTAATTAATG+TGG + chr2_3:14167408-14167427 None:intergenic 15.0%
!!! TTTTCCTTAAAACTCAATTT+TGG + chr2_3:14166663-14166682 None:intergenic 20.0%
!! TAAAATTATGCTTCTATTGT+AGG - chr2_3:14167608-14167627 Msa0279920:CDS 20.0%
!!! ATTGAAAAGTATAAGAATGT+TGG - chr2_3:14168236-14168255 Msa0279920:CDS 20.0%
!!! CGTATGAATTATGAAATTTT+TGG - chr2_3:14168503-14168522 Msa0279920:CDS 20.0%
!!! TTTTGGAAATATACTCTTTA+TGG + chr2_3:14168756-14168775 None:intergenic 20.0%
!!! TTTAAGATATGACATGAAAT+CGG + chr2_3:14168840-14168859 None:intergenic 20.0%
!! ACAACCAAAATTGAGTTTTA+AGG - chr2_3:14166656-14166675 Msa0279920:CDS 25.0%
! CATATTTGTTTGTAAGAAGA+TGG + chr2_3:14166721-14166740 None:intergenic 25.0%
! ACCATTATATTTGACATTGA+TGG - chr2_3:14166974-14166993 Msa0279920:CDS 25.0%
!!! TTTTTTTAAATGGCGAGAAT+TGG + chr2_3:14167131-14167150 None:intergenic 25.0%
! AAGGAATGAAAAAGGTTAAT+GGG + chr2_3:14167457-14167476 None:intergenic 25.0%
! AAAGGAATGAAAAAGGTTAA+TGG + chr2_3:14167458-14167477 None:intergenic 25.0%
! ATAATATCATCAGTAGGAAA+AGG + chr2_3:14167476-14167495 None:intergenic 25.0%
! TCATCTATAATATCATCAGT+AGG + chr2_3:14167482-14167501 None:intergenic 25.0%
! TAATGTTGAAAATGTGTCTA+AGG + chr2_3:14167549-14167568 None:intergenic 25.0%
! TAATGACAATATTAACATCG+AGG - chr2_3:14167665-14167684 Msa0279920:CDS 25.0%
! TTGCATATAATTTCTACTCA+TGG - chr2_3:14167892-14167911 Msa0279920:CDS 25.0%
!! AAATTAGTTTCATCTGACTT+TGG - chr2_3:14168365-14168384 Msa0279920:CDS 25.0%
! TATGTGCAACATACATTAAA+GGG + chr2_3:14168430-14168449 None:intergenic 25.0%
!!! TGAAATTTTTGGTGATGTAT+TGG - chr2_3:14168514-14168533 Msa0279920:CDS 25.0%
! ATATCTTAAAAGATGCATGT+TGG - chr2_3:14168850-14168869 Msa0279920:CDS 25.0%
! TATCTTAAAAGATGCATGTT+GGG - chr2_3:14168851-14168870 Msa0279920:CDS 25.0%
! TGAATAAGTTTGAAGAACTA+TGG - chr2_3:14168885-14168904 Msa0279920:CDS 25.0%
! GAATAAGTTTGAAGAACTAT+GGG - chr2_3:14168886-14168905 Msa0279920:CDS 25.0%
! GAAGAAATGGTTGAAAAATT+TGG - chr2_3:14168908-14168927 Msa0279920:CDS 25.0%
! TGTATGCAAAAAAAAGAATG+TGG - chr2_3:14168960-14168979 Msa0279920:CDS 25.0%
! GTATGCAAAAAAAAGAATGT+GGG - chr2_3:14168961-14168980 Msa0279920:CDS 25.0%
!!! AAGATTTTTTCAGAGCATTA+CGG + chr2_3:14169258-14169277 None:intergenic 25.0%
! ATTAATGAAGATGATGAAGA+AGG - chr2_3:14169949-14169968 Msa0279920:five_prime_UTR 25.0%
! ACAGAACAGATTTGTTCATA+AGG + chr2_3:14166753-14166772 None:intergenic 30.0%
AACAGAAGATTTCAGTTTGA+AGG + chr2_3:14166899-14166918 None:intergenic 30.0%
GCCATCAATGTCAAATATAA+TGG + chr2_3:14166978-14166997 None:intergenic 30.0%
! CCACATTTTCAATACATACA+CGG + chr2_3:14167354-14167373 None:intergenic 30.0%
AGTAGGAAAAGGAATGAAAA+AGG + chr2_3:14167465-14167484 None:intergenic 30.0%
TATGCTTCTATTGTAGGTTA+TGG - chr2_3:14167614-14167633 Msa0279920:CDS 30.0%
CAATATTAACATCGAGGAAA+TGG - chr2_3:14167671-14167690 Msa0279920:CDS 30.0%
GAGATAATATGGATGACAAT+GGG - chr2_3:14167712-14167731 Msa0279920:CDS 30.0%
AGATAATATGGATGACAATG+GGG - chr2_3:14167713-14167732 Msa0279920:CDS 30.0%
!! CATCGGTGATATTTTAAAGA+TGG - chr2_3:14167812-14167831 Msa0279920:CDS 30.0%
TTTCTGTAGATGTAGTTGAA+AGG - chr2_3:14167847-14167866 Msa0279920:CDS 30.0%
GTTATGCGCAAATTCAAATA+CGG + chr2_3:14168141-14168160 None:intergenic 30.0%
!! CAAGTTAGGTTTTGTGAAAA+AGG - chr2_3:14168313-14168332 Msa0279920:CDS 30.0%
AAGGATTTGTATAACCAATC+AGG - chr2_3:14168332-14168351 Msa0279920:CDS 30.0%
GTATGTGCAACATACATTAA+AGG + chr2_3:14168431-14168450 None:intergenic 30.0%
ATACTGTAGACAAAGATAAG+AGG - chr2_3:14168447-14168466 Msa0279920:CDS 30.0%
TTTCCTATAAGTTGCATCAA+AGG + chr2_3:14168540-14168559 None:intergenic 30.0%
TTGGTTATGATGATTAACAC+CGG + chr2_3:14168594-14168613 None:intergenic 30.0%
! CATAATCTATGATGTGCTTT+TGG + chr2_3:14168773-14168792 None:intergenic 30.0%
!!! ATCAAAGGAGAATTTTTTGC+AGG - chr2_3:14168995-14169014 Msa0279920:intron 30.0%
CTCGAAATCGAAAATATGTA+AGG + chr2_3:14169123-14169142 None:intergenic 30.0%
!! TACAAAGTTTCAAAGTACTG+TGG - chr2_3:14169325-14169344 Msa0279920:intron 30.0%
ATTTCAAATGTTCGTGTCTT+AGG - chr2_3:14169392-14169411 Msa0279920:intron 30.0%
!!! TATTGCTGTTTTGATGTATC+TGG - chr2_3:14169447-14169466 Msa0279920:intron 30.0%
CTGTGTAAAACTAGATTCTT+GGG + chr2_3:14169487-14169506 None:intergenic 30.0%
ACACAAATGGTTCACAATAT+TGG - chr2_3:14169545-14169564 Msa0279920:intron 30.0%
CACAAATGGTTCACAATATT+GGG - chr2_3:14169546-14169565 Msa0279920:intron 30.0%
CACTAAGAAAATCTACAATG+CGG + chr2_3:14169660-14169679 None:intergenic 30.0%
AATAAACGATCATGTCCTAA+AGG - chr2_3:14169877-14169896 Msa0279920:five_prime_UTR 30.0%
TTTGGTTGTTGAATGAGAAG+AGG + chr2_3:14166645-14166664 None:intergenic 35.0%
CCGTGTATGTATTGAAAATG+TGG - chr2_3:14167351-14167370 Msa0279920:CDS 35.0%
TTCAGACGAAGGAGATAATA+TGG - chr2_3:14167701-14167720 Msa0279920:CDS 35.0%
GGAGATAATATGGATGACAA+TGG - chr2_3:14167711-14167730 Msa0279920:CDS 35.0%
TATAGCATTCCCATTAGACT+CGG + chr2_3:14167781-14167800 None:intergenic 35.0%
GGGAATGCTATAGTCATAAA+TGG - chr2_3:14167789-14167808 Msa0279920:CDS 35.0%
GCTATAGTCATAAATGGCAT+CGG - chr2_3:14167795-14167814 Msa0279920:CDS 35.0%
ATTTCTACTCATGGTATGCA+AGG - chr2_3:14167901-14167920 Msa0279920:CDS 35.0%
TTTCTACTCATGGTATGCAA+GGG - chr2_3:14167902-14167921 Msa0279920:CDS 35.0%
!! AGCAAACTTTTGTTTGTTCG+CGG - chr2_3:14167985-14168004 Msa0279920:CDS 35.0%
!! TTTGCTATGTGGTCTTTTAC+CGG - chr2_3:14168178-14168197 Msa0279920:CDS 35.0%
GTAAGACCATATCAAACGTA+TGG - chr2_3:14168260-14168279 Msa0279920:CDS 35.0%
ATTGCACCATACGTTTGATA+TGG + chr2_3:14168269-14168288 None:intergenic 35.0%
ATATCAAACGTATGGTGCAA+TGG - chr2_3:14168268-14168287 Msa0279920:CDS 35.0%
ATAACCAATCAGGAAGACAA+AGG - chr2_3:14168342-14168361 Msa0279920:CDS 35.0%
ATTTCCTTTGTCTTCCTGAT+TGG + chr2_3:14168349-14168368 None:intergenic 35.0%
TTAGTTTCATCTGACTTTGG+CGG - chr2_3:14168368-14168387 Msa0279920:CDS 35.0%
ACACCGGAGAAAATAACAAA+CGG + chr2_3:14168578-14168597 None:intergenic 35.0%
AGAGACATATGTTTGGTTGT+TGG - chr2_3:14168655-14168674 Msa0279920:CDS 35.0%
CCTTTATCCGTAATAACTGA+CGG - chr2_3:14168710-14168729 Msa0279920:CDS 35.0%
AACATCACCGTCAGTTATTA+CGG + chr2_3:14168720-14168739 None:intergenic 35.0%
CACATCATAGATTATGTGCT+TGG - chr2_3:14168777-14168796 Msa0279920:CDS 35.0%
TGAAGAACTATGGGAAGAAA+TGG - chr2_3:14168895-14168914 Msa0279920:CDS 35.0%
! TAAGGCATCTATGAAATTGC+TGG + chr2_3:14169105-14169124 None:intergenic 35.0%
! TCGCAAACTAGTTTGCAATA+CGG + chr2_3:14169182-14169201 None:intergenic 35.0%
AGAAAATCTCCCTTGTAAAC+TGG + chr2_3:14169228-14169247 None:intergenic 35.0%
!! TTTTCAGAGCATTACGGAAA+AGG + chr2_3:14169252-14169271 None:intergenic 35.0%
TGAAATTCAAGAGATGTCCA+TGG - chr2_3:14169294-14169313 Msa0279920:intron 35.0%
GAAATTCAAGAGATGTCCAT+GGG - chr2_3:14169295-14169314 Msa0279920:intron 35.0%
AACTTTGTAGATAGAACCCA+TGG + chr2_3:14169314-14169333 None:intergenic 35.0%
!! GTTTCAAAGTACTGTGGAAA+TGG - chr2_3:14169331-14169350 Msa0279920:intron 35.0%
! CACGAACATTTGAAATCTAC+AGG + chr2_3:14169388-14169407 None:intergenic 35.0%
ACAGCAATAATATGATCGCA+AGG + chr2_3:14169436-14169455 None:intergenic 35.0%
GTAAAACTAGATTCTTGGGA+AGG + chr2_3:14169483-14169502 None:intergenic 35.0%
CCTGTGTAAAACTAGATTCT+TGG + chr2_3:14169488-14169507 None:intergenic 35.0%
!!! CCAAGAATCTAGTTTTACAC+AGG - chr2_3:14169485-14169504 Msa0279920:intron 35.0%
!!! AGAATCTAGTTTTACACAGG+TGG - chr2_3:14169488-14169507 Msa0279920:intron 35.0%
TCAAATTGCTTCAAGGTATG+CGG - chr2_3:14169573-14169592 Msa0279920:intron 35.0%
!! TTCTTAGTGCTGAACTTTTG+AGG - chr2_3:14169671-14169690 Msa0279920:intron 35.0%
AAGAATAAACCAACAGCTGT+TGG - chr2_3:14169697-14169716 Msa0279920:intron 35.0%
!! TCAAAGTTGTTGACTCCTTT+AGG + chr2_3:14169895-14169914 None:intergenic 35.0%
ATCCAAACCAAGCAAAGCTA+AGG - chr2_3:14166813-14166832 Msa0279920:CDS 40.0%
TCCAAACCAAGCAAAGCTAA+GGG - chr2_3:14166814-14166833 Msa0279920:CDS 40.0%
! AAGGGACTCTTTGTGTTGTT+AGG - chr2_3:14166832-14166851 Msa0279920:CDS 40.0%
! TTGATGGCCATATGTGTATG+CGG - chr2_3:14166990-14167009 Msa0279920:CDS 40.0%
! ATAAGCACCGCATACACATA+TGG + chr2_3:14167000-14167019 None:intergenic 40.0%
CATTGAGGTAGTTGCAAATC+AGG + chr2_3:14167505-14167524 None:intergenic 40.0%
TTGCAACTACCTCAATGTTG+TGG - chr2_3:14167508-14167527 Msa0279920:CDS 40.0%
GTGTCTAAGGAGATCAAACT+AGG + chr2_3:14167536-14167555 None:intergenic 40.0%
GCTTCTATTGTAGGTTATGG+AGG - chr2_3:14167617-14167636 Msa0279920:CDS 40.0%
TCTATTGTAGGTTATGGAGG+AGG - chr2_3:14167620-14167639 Msa0279920:CDS 40.0%
TCATGGTATGCAAGGGTAAA+CGG - chr2_3:14167909-14167928 Msa0279920:CDS 40.0%
!! GGGTAAACGGATTTTCTGTT+CGG - chr2_3:14167922-14167941 Msa0279920:CDS 40.0%
!! GCAAACTTTTGTTTGTTCGC+GGG - chr2_3:14167986-14168005 Msa0279920:CDS 40.0%
GCTTCGAAACAATGTCTATG+TGG + chr2_3:14168106-14168125 None:intergenic 40.0%
TAGACATTGTTTCGAAGCGT+TGG - chr2_3:14168108-14168127 Msa0279920:CDS 40.0%
!! TTGTTGGATGGTTTGCTATG+TGG - chr2_3:14168167-14168186 Msa0279920:CDS 40.0%
! TCAGGTGGTTTTCACAAGTT+AGG - chr2_3:14168299-14168318 Msa0279920:CDS 40.0%
!!! AGAGGCTTGAACGTCTTTTT+TGG - chr2_3:14168465-14168484 Msa0279920:CDS 40.0%
!!! GAACGTCTTTTTTGGTGTGA+TGG - chr2_3:14168473-14168492 Msa0279920:CDS 40.0%
TGGCCTTTGATGCAACTTAT+AGG - chr2_3:14168534-14168553 Msa0279920:CDS 40.0%
!!! TGCCCGTTTGTTATTTTCTC+CGG - chr2_3:14168572-14168591 Msa0279920:CDS 40.0%
CACCGGAGAAAATAACAAAC+GGG + chr2_3:14168577-14168596 None:intergenic 40.0%
AGGTTTAGTTACGAGAGAGA+CGG - chr2_3:14168631-14168650 Msa0279920:CDS 40.0%
AGACGGAAGAGACATATGTT+TGG - chr2_3:14168648-14168667 Msa0279920:CDS 40.0%
CATTCATAGCAGTCGCAAAT+TGG + chr2_3:14168682-14168701 None:intergenic 40.0%
CAATTTGCGACTGCTATGAA+TGG - chr2_3:14168680-14168699 Msa0279920:CDS 40.0%
CCGTCAGTTATTACGGATAA+AGG + chr2_3:14168713-14168732 None:intergenic 40.0%
TATGTGCTTGGCATCTTCTA+CGG - chr2_3:14168789-14168808 Msa0279920:CDS 40.0%
GGAATGCATCATCGAATGTT+GGG - chr2_3:14168810-14168829 Msa0279920:CDS 40.0%
AAGATGCATGTTGGGTGATA+TGG - chr2_3:14168859-14168878 Msa0279920:CDS 40.0%
TGATCCAATTGTTGTCTTGC+AGG + chr2_3:14168934-14168953 None:intergenic 40.0%
GAGGGTTTACATAGTCACAT+AGG - chr2_3:14169040-14169059 Msa0279920:intron 40.0%
ACCATAGTTGGAACGATAGT+CGG + chr2_3:14169155-14169174 None:intergenic 40.0%
! CGCAAACTAGTTTGCAATAC+GGG + chr2_3:14169181-14169200 None:intergenic 40.0%
! AGCATCGAACCAGTTTACAA+GGG - chr2_3:14169216-14169235 Msa0279920:intron 40.0%
CAAATGTTCGTGTCTTAGGA+TGG - chr2_3:14169396-14169415 Msa0279920:intron 40.0%
GTTCGAGCAAGATACACAAA+TGG - chr2_3:14169532-14169551 Msa0279920:intron 40.0%
GGGATTCTCAAATTGCTTCA+AGG - chr2_3:14169566-14169585 Msa0279920:intron 40.0%
CAAATTGCTTCAAGGTATGC+GGG - chr2_3:14169574-14169593 Msa0279920:intron 40.0%
GGGAATTATTCAGTTGTCGA+AGG - chr2_3:14169594-14169613 Msa0279920:intron 40.0%
TATTCAGTTGTCGAAGGATG+TGG - chr2_3:14169600-14169619 Msa0279920:intron 40.0%
GAGGGTTTATCAAGATGTAG+AGG - chr2_3:14169627-14169646 Msa0279920:intron 40.0%
!! TTGGTATTGATGCTAGCACT+GGG - chr2_3:14169716-14169735 Msa0279920:intron 40.0%
CTTTAGTCCTCACACAAGTA+GGG + chr2_3:14169777-14169796 None:intergenic 40.0%
CTACTTGTGTGAGGACTAAA+GGG - chr2_3:14169776-14169795 Msa0279920:CDS 40.0%
!! CTTTGCTTGGTTTGGATCTC+AGG + chr2_3:14166810-14166829 None:intergenic 45.0%
!! TCCCTTAGCTTTGCTTGGTT+TGG + chr2_3:14166818-14166837 None:intergenic 45.0%
!! AAGAGTCCCTTAGCTTTGCT+TGG + chr2_3:14166823-14166842 None:intergenic 45.0%
GTGAACTGTCACATGGATGA+AGG + chr2_3:14167332-14167351 None:intergenic 45.0%
ATACACGGTGAACTGTCACA+TGG + chr2_3:14167339-14167358 None:intergenic 45.0%
! AACTAGGTGCCACAACATTG+AGG + chr2_3:14167520-14167539 None:intergenic 45.0%
AATGGGGCTAATGAGTGTGA+TGG - chr2_3:14167729-14167748 Msa0279920:CDS 45.0%
AGCGATTCATCCGAGTCTAA+TGG - chr2_3:14167768-14167787 Msa0279920:CDS 45.0%
GCGATTCATCCGAGTCTAAT+GGG - chr2_3:14167769-14167788 Msa0279920:CDS 45.0%
GCTGCAGAACATTACCCAAA+CGG + chr2_3:14167968-14167987 None:intergenic 45.0%
!! ACTTTTGTTTGTTCGCGGGA+AGG - chr2_3:14167990-14168009 Msa0279920:CDS 45.0%
!!! GGAAGGTTTTAGAGAGGACA+GGG - chr2_3:14168007-14168026 Msa0279920:CDS 45.0%
!!! GAAGGTTTTAGAGAGGACAG+GGG - chr2_3:14168008-14168027 Msa0279920:CDS 45.0%
GAGAACCCAGAAATGATACC+AGG - chr2_3:14168054-14168073 Msa0279920:CDS 45.0%
CCACACCTGGTATCATTTCT+GGG + chr2_3:14168062-14168081 None:intergenic 45.0%
TCCACACCTGGTATCATTTC+TGG + chr2_3:14168063-14168082 None:intergenic 45.0%
! TTTTGCAGAACATCCACACC+TGG + chr2_3:14168075-14168094 None:intergenic 45.0%
CATAACCACGAGTTGTTGGA+TGG - chr2_3:14168155-14168174 Msa0279920:CDS 45.0%
!! GCTGTTAGCTTTCTATGTGC+CGG + chr2_3:14168200-14168219 None:intergenic 45.0%
GGTGCAATGGCTAATTCATC+AGG - chr2_3:14168281-14168300 Msa0279920:CDS 45.0%
GCAATGGCTAATTCATCAGG+TGG - chr2_3:14168284-14168303 Msa0279920:CDS 45.0%
CTGTCGCAAAGACAACAGTT+TGG + chr2_3:14168613-14168632 None:intergenic 45.0%
CAAACTGTTGTCTTTGCGAC+AGG - chr2_3:14168611-14168630 Msa0279920:CDS 45.0%
TGCGACTGCTATGAATGGTA+AGG - chr2_3:14168685-14168704 Msa0279920:CDS 45.0%
CGGAATGCATCATCGAATGT+TGG - chr2_3:14168809-14168828 Msa0279920:CDS 45.0%
ATGCATGTTGGGTGATATGG+AGG - chr2_3:14168862-14168881 Msa0279920:CDS 45.0%
TTGGCCTGCAAGACAACAAT+TGG - chr2_3:14168927-14168946 Msa0279920:CDS 45.0%
CAGGTATACGAACCACATCT+CGG - chr2_3:14169014-14169033 Msa0279920:intron 45.0%
TCCGACTATCGTTCCAACTA+TGG - chr2_3:14169151-14169170 Msa0279920:intron 45.0%
! CAATACGGGTTGACCATAGT+TGG + chr2_3:14169167-14169186 None:intergenic 45.0%
! CAGCATCGAACCAGTTTACA+AGG - chr2_3:14169215-14169234 Msa0279920:intron 45.0%
!! ACTGTGGAAATGGAAGTGTC+TGG - chr2_3:14169341-14169360 Msa0279920:intron 45.0%
TGTCTTAGGATGGAGTCGTT+TGG - chr2_3:14169406-14169425 Msa0279920:intron 45.0%
GCATCAATACCAACAGCTGT+TGG + chr2_3:14169709-14169728 None:intergenic 45.0%
!! GTTGGTATTGATGCTAGCAC+TGG - chr2_3:14169715-14169734 Msa0279920:intron 45.0%
!! TGGTATTGATGCTAGCACTG+GGG - chr2_3:14169717-14169736 Msa0279920:intron 45.0%
AGTCGTCGACGAAAGTTTAC+TGG - chr2_3:14169750-14169769 Msa0279920:intron 45.0%
CCTTTAGTCCTCACACAAGT+AGG + chr2_3:14169778-14169797 None:intergenic 45.0%
CCTACTTGTGTGAGGACTAA+AGG - chr2_3:14169775-14169794 Msa0279920:CDS 45.0%
! CCACACTGACTACATGATTG+AGG + chr2_3:14169844-14169863 None:intergenic 45.0%
CCTCAATCATGTAGTCAGTG+TGG - chr2_3:14169841-14169860 Msa0279920:CDS 45.0%
TGTAGTCAGTGTGGTGTGAT+AGG - chr2_3:14169850-14169869 Msa0279920:CDS 45.0%
!!! ATAAAAATAAAACTTAATTT+TGG + chr2_3:14166864-14166883 None:intergenic 5.0%
ATGGACGAAGCTTCAGACGA+AGG - chr2_3:14167690-14167709 Msa0279920:CDS 50.0%
TTCGGAAGACCCAAGTTCTG+AGG - chr2_3:14167940-14167959 Msa0279920:CDS 50.0%
! TCGGAAGACCCAAGTTCTGA+GGG - chr2_3:14167941-14167960 Msa0279920:CDS 50.0%
CAAACGGTCCCTCAGAACTT+GGG + chr2_3:14167952-14167971 None:intergenic 50.0%
!! CAAGTTCTGAGGGACCGTTT+GGG - chr2_3:14167951-14167970 Msa0279920:CDS 50.0%
!!! TTCGCGGGAAGGTTTTAGAG+AGG - chr2_3:14168001-14168020 Msa0279920:CDS 50.0%
!!! GGGAAGGTTTTAGAGAGGAC+AGG - chr2_3:14168006-14168025 Msa0279920:CDS 50.0%
CCCAGAAATGATACCAGGTG+TGG - chr2_3:14168059-14168078 Msa0279920:CDS 50.0%
TGCGCATAACCACGAGTTGT+TGG - chr2_3:14168151-14168170 Msa0279920:CDS 50.0%
GCAAACCATCCAACAACTCG+TGG + chr2_3:14168163-14168182 None:intergenic 50.0%
TGGGCGACTGCTCATATCAA+AGG - chr2_3:14168980-14168999 Msa0279920:intron 50.0%
TAAACCCTCACACCGAGATG+TGG + chr2_3:14169029-14169048 None:intergenic 50.0%
TACTGGACCCTACTTGTGTG+AGG - chr2_3:14169767-14169786 Msa0279920:intron 50.0%
TGTGTGAGGACTAAAGGGTG+TGG - chr2_3:14169781-14169800 Msa0279920:CDS 50.0%
TCTAATCCAATTGCCACGCC+TGG - chr2_3:14169805-14169824 Msa0279920:CDS 50.0%
CCAAACGGTCCCTCAGAACT+TGG + chr2_3:14167953-14167972 None:intergenic 55.0%
!! CCAAGTTCTGAGGGACCGTT+TGG - chr2_3:14167950-14167969 Msa0279920:CDS 55.0%
AGAGGACAGGGGATTGACCT+TGG - chr2_3:14168019-14168038 Msa0279920:CDS 55.0%
ACAGGGGATTGACCTTGGAG+AGG - chr2_3:14168024-14168043 Msa0279920:CDS 55.0%
! ACGAACCACATCTCGGTGTG+AGG - chr2_3:14169021-14169040 Msa0279920:intron 55.0%
! CGAACCACATCTCGGTGTGA+GGG - chr2_3:14169022-14169041 Msa0279920:intron 55.0%
TGTCGAAGGATGTGGCTGAG+AGG - chr2_3:14169608-14169627 Msa0279920:intron 55.0%
GTCGAAGGATGTGGCTGAGA+GGG - chr2_3:14169609-14169628 Msa0279920:intron 55.0%
AATCCAATTGCCACGCCTGG+TGG - chr2_3:14169808-14169827 Msa0279920:CDS 55.0%
GGGGATTGACCTTGGAGAGG+CGG - chr2_3:14168027-14168046 Msa0279920:CDS 60.0%
TTCTCGCTTCCGCCTCTCCA+AGG + chr2_3:14168039-14168058 None:intergenic 60.0%
CTTCCACCAGGCGTGGCAAT+TGG + chr2_3:14169814-14169833 None:intergenic 60.0%
TTGCCACGCCTGGTGGAAGT+AGG - chr2_3:14169815-14169834 Msa0279920:CDS 60.0%
TGAGGACGCCTACTTCCACC+AGG + chr2_3:14169826-14169845 None:intergenic 60.0%
ACGCCTACTTCCACCAGGCG+TGG + chr2_3:14169821-14169840 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 14166637 14169987 14166637 ID=Msa0279920;Name=Msa0279920
chr2_3 mRNA 14166637 14169987 14166637 ID=Msa0279920-mRNA-1;Parent=Msa0279920;Name=Msa0279920-mRNA-1;_AED=0.05;_eAED=0.05;_QI=117|0|0.33|0.66|0|0.33|3|0|834
chr2_3 exon 14166637 14168994 14166637 ID=Msa0279920-mRNA-1:exon:5966;Parent=Msa0279920-mRNA-1
chr2_3 exon 14169252 14169298 14169252 ID=Msa0279920-mRNA-1:exon:5965;Parent=Msa0279920-mRNA-1
chr2_3 exon 14169771 14169987 14169771 ID=Msa0279920-mRNA-1:exon:5964;Parent=Msa0279920-mRNA-1
chr2_3 five_prime_UTR 14169871 14169987 14169871 ID=Msa0279920-mRNA-1:five_prime_utr;Parent=Msa0279920-mRNA-1
chr2_3 CDS 14169771 14169870 14169771 ID=Msa0279920-mRNA-1:cds;Parent=Msa0279920-mRNA-1
chr2_3 CDS 14169252 14169298 14169252 ID=Msa0279920-mRNA-1:cds;Parent=Msa0279920-mRNA-1
chr2_3 CDS 14166637 14168994 14166637 ID=Msa0279920-mRNA-1:cds;Parent=Msa0279920-mRNA-1
Gene Sequence

>Msa0279920

ATGAACAAATCTGTTCTGTTGTCTTTCAAACTGAGTTCAAGTGAAAGTAGCATCCTGAGATCCAAACCAAGCAAAGCTAAGGGACTCTTTGTGTTGTTAGATTCCTTCATCCATGTGACAGTTCACCGTGTATGTATTGAAAATGTGGTTATGGAGGAGGTAACAGAAAGTTCAGCTGACAGTAATGACAATATTAACATCGAGGAAATGGACGAAGCTTCAGACGAAGGAGATAATATGGATGACAATGGGGCTAATGAGTGTGATGGAGATTTAGAAGCGAGTAGCGATTCATCCGAGTCTAATGGGAATGCTATAGTCATAAATGGCATCGGTGATATTTTAAAGATGGACATGAAAAACATTTCTGTAGATGTAGTTGAAAGGTTTGACTTTGCTGATTTAGATGTTGCATATAATTTCTACTCATGGTATGCAAGGGTAAACGGATTTTCTGTTCGGAAGACCCAAGTTCTGAGGGACCGTTTGGGTAATGTTCTGCAGCAAACTTTTGTTTGTTCGCGGGAAGGTTTTAGAGAGGACAGGGGATTGACCTTGGAGAGGCGGAAGCGAGAACCCAGAAATGATACCAGGTGTGGATGTTCTGCAAAATGTCGTGTCCACATAGACATTGTTTCGAAGCGTTGGTATGTGACCGTATTTGAATTTGCGCATAACCACGAGTTGTTGGATGGTTTGCTATGTGGTCTTTTACCGGCACATAGAAAGCTAACAGCAACTGATTTGATTAAGATTGAAAAGTATAAGAATGTTGGTGTAAGACCATATCAAACGTATGGTGCAATGGCTAATTCATCAGGTGGTTTTCACAAGTTAGGTTTTGTGAAAAAGGATTTGTATAACCAATCAGGAAGACAAAGGAAATTAGTTTCATCTGACTTTGGCGGTGCACTGAAGTATCTTCATATGCTTCGTACAAAAGACCCTTTAATGTATGTTGCACATACTGTAGACAAAGATAAGAGGCTTGAACGTCTTTTTTGGTGTGATGGAGAAAGTCGTATGAATTATGAAATTTTTGGTGATGTATTGGCCTTTGATGCAACTTATAGGAAAAACAAATACAATTGCCCGTTTGTTATTTTCTCCGGTGTTAATCATCATAACCAAACTGTTGTCTTTGCGACAGGTTTAGTTACGAGAGAGACGGAAGAGACATATGTTTGGTTGTTGGACCAATTTGCGACTGCTATGAATGGTAAGGCTCCTTTATCCGTAATAACTGACGGTGATGTTGCAATGAAAAATGCCATAAAGAGTATATTTCCAAAAGCACATCATAGATTATGTGCTTGGCATCTTCTACGGAATGCATCATCGAATGTTGGGATTGCCGATTTCATGTCATATCTTAAAAGATGCATGTTGGGTGATATGGAGGTGAATAAGTTTGAAGAACTATGGGAAGAAATGGTTGAAAAATTTGGCCTGCAAGACAACAATTGGATCAATGAGATGTATGCAAAAAAAAGAATGTGGGCGACTGCTCATATCAAAGGAGAATTTTTTGCAGGTATACGAACCACATCTCGGTGTGAGGGTTTACATAGTCACATAGGTCAATTTGTGCATTCAAGAATTAACTTGACTGATTTTGTCCAGCAATTTCATAGATGCCTTACATATTTTCGATTTCGAGAGATTGAGTCCGACTATCGTTCCAACTATGGTCAACCCGTATTGCAAACTAGTTTGCGATTCATTGAGAGATCAGCATCGAACCAGTTTACAAGGGAGATTTTCTTCCTTTTCCGTAATGCTCTGAAAAAATCTTTGATGTTGAGAATTATTGAAATTCAAGAGATGTCCATGGGTTCTATCTACAAAGTTTCAAAGTACTGTGGAAATGGAAGTGTCTGGCACGTTACACATTGTGAAACTCCTGTAGATTTCAAATGTTCGTGTCTTAGGATGGAGTCGTTTGGACTGCCTTGCGATCATATTATTGCTGTTTTGATGTATCTGGATTTTGATCACCTTCCCAAGAATCTAGTTTTACACAGGTGGACAAAGTTCGCTACAGATACAGTTCGAGCAAGATACACAAATGGTTCACAATATTGGGATTCTCAAATTGCTTCAAGGTATGCGGGAATTATTCAGTTGTCGAAGGATGTGGCTGAGAGGGTTTATCAAGATGTAGAGGAGTACAACCGCATTGTAGATTTTCTTAGTGCTGAACTTTTGAGGTTGAAGAATAAACCAACAGCTGTTGGTATTGATGCTAGCACTGGGGTACACAATGTAGTCGTCGACGAAAGTTTACTGGACCCTACTTGTGTGAGGACTAAAGGGTGTGGATCTAATCCAATTGCCACGCCTGGTGGAAGTAGGCGTCCTCAATCATGTAGTCAGTGTGGTGTGATAGGACACAATAAACGATCATGTCCTAAAGGAGTCAACAACTTTGAAAATGCATGCACTTCGAGTGCGACAATTTATGAAATTAATGAAGATGATGAAGAAGGAGATCTTGAGCTGTGA
Protein sequence

>Msa0279920

MNKSVLLSFKLSSSESSILRSKPSKAKGLFVLLDSFIHVTVHRVCIENVVMEEVTESSADSNDNINIEEMDEASDEGDNMDDNGANECDGDLEASSDSSESNGNAIVINGIGDILKMDMKNISVDVVERFDFADLDVAYNFYSWYARVNGFSVRKTQVLRDRLGNVLQQTFVCSREGFREDRGLTLERRKREPRNDTRCGCSAKCRVHIDIVSKRWYVTVFEFAHNHELLDGLLCGLLPAHRKLTATDLIKIEKYKNVGVRPYQTYGAMANSSGGFHKLGFVKKDLYNQSGRQRKLVSSDFGGALKYLHMLRTKDPLMYVAHTVDKDKRLERLFWCDGESRMNYEIFGDVLAFDATYRKNKYNCPFVIFSGVNHHNQTVVFATGLVTRETEETYVWLLDQFATAMNGKAPLSVITDGDVAMKNAIKSIFPKAHHRLCAWHLLRNASSNVGIADFMSYLKRCMLGDMEVNKFEELWEEMVEKFGLQDNNWINEMYAKKRMWATAHIKGEFFAGIRTTSRCEGLHSHIGQFVHSRINLTDFVQQFHRCLTYFRFREIESDYRSNYGQPVLQTSLRFIERSASNQFTREIFFLFRNALKKSLMLRIIEIQEMSMGSIYKVSKYCGNGSVWHVTHCETPVDFKCSCLRMESFGLPCDHIIAVLMYLDFDHLPKNLVLHRWTKFATDTVRARYTNGSQYWDSQIASRYAGIIQLSKDVAERVYQDVEEYNRIVDFLSAELLRLKNKPTAVGIDASTGVHNVVVDESLLDPTCVRTKGCGSNPIATPGGSRRPQSCSQCGVIGHNKRSCPKGVNNFENACTSSATIYEINEDDEEGDLEL*