Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284850 | AES60129.2 | 85.185 | 135 | 19 | 1 | 209 | 343 | 26 | 159 | 7.85e-72 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284850 | G7I2F3 | 85.185 | 135 | 19 | 1 | 209 | 343 | 26 | 159 | 3.75e-72 | 234 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0284850 | Msa0674790 | 0.837940 | 3.863276e-57 | -8.615850e-47 |
| Msa0284850 | Msa0855300 | 0.835073 | 2.075080e-56 | -8.615850e-47 |
| Msa0284850 | Msa0917600 | 0.854717 | 1.021877e-61 | -8.615850e-47 |
| Msa0284850 | Msa1021760 | 0.831612 | 1.512258e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0284850 | MtrunA17_Chr2g0307151 | 39.672 | 305 | 132 | 5 | 89 | 342 | 6 | 309 | 3.07e-59 | 195 |
| Msa0284850 | MtrunA17_Chr6g0466851 | 29.454 | 421 | 207 | 9 | 3 | 335 | 24 | 442 | 4.01e-47 | 170 |
| Msa0284850 | MtrunA17_Chr5g0420271 | 45.283 | 159 | 80 | 2 | 185 | 342 | 255 | 407 | 1.01e-31 | 123 |
| Msa0284850 | MtrunA17_Chr5g0420271 | 35.961 | 203 | 89 | 6 | 1 | 200 | 1 | 165 | 5.90e-27 | 110 |
| Msa0284850 | MtrunA17_Chr2g0305931 | 49.495 | 99 | 50 | 0 | 237 | 335 | 139 | 237 | 1.31e-24 | 100 |
| Msa0284850 | MtrunA17_Chr4g0024831 | 61.842 | 76 | 29 | 0 | 65 | 140 | 1 | 76 | 2.86e-22 | 89.7 |
| Msa0284850 | MtrunA17_Chr8g0343271 | 51.613 | 62 | 30 | 0 | 274 | 335 | 2 | 63 | 2.21e-14 | 73.2 |
| Msa0284850 | MtrunA17_Chr7g0227751 | 47.945 | 73 | 38 | 0 | 263 | 335 | 2 | 74 | 3.26e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 71 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGTCTCACTCCTGAATTTC+AGG | 0.228088 | 2_3:-23825071 | Msa0284850:intron |
| GCAATTGAATCTTGTTAAAT+TGG | 0.231432 | 2_3:-23822770 | Msa0284850:CDS |
| TTCCAATTAGTATGGAAAAT+TGG | 0.270100 | 2_3:-23825420 | Msa0284850:CDS |
| TGACTTTCTCCGACAAGTTT+TGG | 0.308285 | 2_3:+23823224 | None:intergenic |
| CTTTCTTTCTTCAGGTTCAA+TGG | 0.308490 | 2_3:-23825519 | Msa0284850:intron |
| TCGGCTGGTTCCAATTAGTA+TGG | 0.318264 | 2_3:-23825428 | Msa0284850:CDS |
| TCTATCCTTTGAATCAAATC+TGG | 0.335548 | 2_3:+23823164 | None:intergenic |
| CACCCGGATATGTAAAGTTT+AGG | 0.336106 | 2_3:-23822891 | Msa0284850:CDS |
| AAGAGGGCTGCAAGAATCTT+TGG | 0.375507 | 2_3:+23823133 | None:intergenic |
| TCTCCTTCTTCAACAGGTAT+AGG | 0.386213 | 2_3:+23822835 | None:intergenic |
| AATCCTAAACTTTACATATC+CGG | 0.393093 | 2_3:+23822888 | None:intergenic |
| ATCATCCCCATGCCGACATT+TGG | 0.400493 | 2_3:-23822971 | Msa0284850:CDS |
| TGGATGCATCGTTCGTCGGC+TGG | 0.424894 | 2_3:-23825443 | Msa0284850:CDS |
| CAATATAACTGACAAAACTT+TGG | 0.426522 | 2_3:+23825464 | None:intergenic |
| TTGACTGTTGGTGAAGCAAT+AGG | 0.427110 | 2_3:-23822808 | Msa0284850:CDS |
| CCACATAGAACCGGAGCATT+GGG | 0.447151 | 2_3:-23825110 | Msa0284850:CDS |
| GGATGGAGTGATTGATAAAG+AGG | 0.450299 | 2_3:-23823716 | Msa0284850:CDS |
| AAGACATCTCCTTCTTCAAC+AGG | 0.451832 | 2_3:+23822829 | None:intergenic |
| ATTGGTCGATGAACATCAAA+AGG | 0.484853 | 2_3:-23822752 | Msa0284850:CDS |
| CCCACATAGAACCGGAGCAT+TGG | 0.486223 | 2_3:-23825111 | Msa0284850:CDS |
| ATCCTAAACTTTACATATCC+GGG | 0.487205 | 2_3:+23822889 | None:intergenic |
| CCAATGCTCCGGTTCTATGT+GGG | 0.497189 | 2_3:+23825111 | None:intergenic |
| TTGCCTATACCTGTTGAAGA+AGG | 0.500655 | 2_3:-23822838 | Msa0284850:CDS |
| TACGTATCCCCACATAGAAC+CGG | 0.508700 | 2_3:-23825119 | Msa0284850:CDS |
| CCCAATGCTCCGGTTCTATG+TGG | 0.510788 | 2_3:+23825110 | None:intergenic |
| GATTGCTGCCCATGTTGGTA+AGG | 0.514063 | 2_3:-23823737 | Msa0284850:CDS |
| AACAACCAGATTTGATTCAA+AGG | 0.523615 | 2_3:-23823169 | Msa0284850:CDS |
| TGCCGACATTTGGTTGCTCA+TGG | 0.524359 | 2_3:-23822961 | Msa0284850:CDS |
| CAGGTTCAATGGAATGCTCT+AGG | 0.525756 | 2_3:-23825508 | Msa0284850:CDS |
| GAGCAACCAAATGTCGGCAT+GGG | 0.527172 | 2_3:+23822965 | None:intergenic |
| TGACTGTTGGTGAAGCAATA+GGG | 0.528262 | 2_3:-23822807 | Msa0284850:CDS |
| AGATAAATGGCTTCAAGTAA+TGG | 0.533827 | 2_3:-23825697 | None:intergenic |
| TGAAGCAATAGGGACATTTG+TGG | 0.543469 | 2_3:-23822797 | Msa0284850:CDS |
| ATATTGGATGCATCGTTCGT+CGG | 0.549916 | 2_3:-23825447 | Msa0284850:CDS |
| CACATAGACTCTTGTCAATG+TGG | 0.550998 | 2_3:+23825183 | None:intergenic |
| GCTGCCCATGTTGGTAAGGA+TGG | 0.556998 | 2_3:-23823733 | Msa0284850:CDS |
| ACAAAGGCATCCCAATGCTC+CGG | 0.559334 | 2_3:+23825100 | None:intergenic |
| GAAAACATTTACCTTCGGAA+TGG | 0.559486 | 2_3:+23823100 | None:intergenic |
| AATGGTGGAAGTAGTTCAAG+AGG | 0.560046 | 2_3:-23825679 | Msa0284850:CDS |
| TGCACTTGACGCCATTCCGA+AGG | 0.560181 | 2_3:-23823111 | Msa0284850:intron |
| AGTCAACTTGAACAGAATGA+TGG | 0.564479 | 2_3:-23823206 | Msa0284850:CDS |
| TGAGCAACCAAATGTCGGCA+TGG | 0.581831 | 2_3:+23822964 | None:intergenic |
| CACTCCATCCTTACCAACAT+GGG | 0.583925 | 2_3:+23823729 | None:intergenic |
| ATTCATAAAGCTAAAAGTCG+TGG | 0.586493 | 2_3:-23825616 | Msa0284850:CDS |
| TTTATGAATCACTCGCATGC+GGG | 0.587439 | 2_3:+23825630 | None:intergenic |
| AGTGAGACGTTGAGCTACAA+AGG | 0.595851 | 2_3:+23825084 | None:intergenic |
| CAATAGGGACATTTGTGGCA+TGG | 0.597695 | 2_3:-23822792 | Msa0284850:CDS |
| TGGGGATACGTATCATTCGA+AGG | 0.599391 | 2_3:+23825130 | None:intergenic |
| AACAGAATGATGGTGGAGAG+AGG | 0.602687 | 2_3:-23823196 | Msa0284850:CDS |
| TCACTCCATCCTTACCAACA+TGG | 0.603845 | 2_3:+23823728 | None:intergenic |
| TGCCATGAGCAACCAAATGT+CGG | 0.603911 | 2_3:+23822959 | None:intergenic |
| CAATGCTCCGGTTCTATGTG+GGG | 0.604052 | 2_3:+23825112 | None:intergenic |
| CAACTTGAACAGAATGATGG+TGG | 0.604122 | 2_3:-23823203 | Msa0284850:CDS |
| TAAATGGCTTCAAGTAATGG+TGG | 0.604383 | 2_3:-23825694 | Msa0284850:CDS |
| CTTTATGAATCACTCGCATG+CGG | 0.607017 | 2_3:+23825629 | None:intergenic |
| GAAGGAGATGTCTTGACTGT+TGG | 0.612130 | 2_3:-23822820 | Msa0284850:CDS |
| AGGCAACAACCAAAACTTGT+CGG | 0.621046 | 2_3:-23823233 | Msa0284850:CDS |
| GGAATGGCGTCAAGTGCAAG+AGG | 0.621123 | 2_3:+23823116 | None:intergenic |
| GTGTGGATTGCTGCCCATGT+TGG | 0.622777 | 2_3:-23823742 | Msa0284850:CDS |
| GGATTGATGTTGCTGTTGAG+AGG | 0.623376 | 2_3:-23822870 | Msa0284850:CDS |
| GATTGATGTTGCTGTTGAGA+GGG | 0.626189 | 2_3:-23822869 | Msa0284850:CDS |
| CACAACAAGAAATTACCACC+CGG | 0.626978 | 2_3:-23822907 | Msa0284850:CDS |
| TCATGGCAAATTATATAACA+CGG | 0.629389 | 2_3:-23822944 | Msa0284850:CDS |
| AGCAACCAAATGTCGGCATG+GGG | 0.630470 | 2_3:+23822966 | None:intergenic |
| CATGGCAAATTATATAACAC+GGG | 0.632665 | 2_3:-23822943 | Msa0284850:CDS |
| AGAGGAAGTTCAGAAAGTTG+CGG | 0.637868 | 2_3:-23823698 | Msa0284850:CDS |
| AATGCTCTAGGTCAACCAGT+TGG | 0.645736 | 2_3:-23825496 | Msa0284850:CDS |
| GAATGGCGTCAAGTGCAAGA+GGG | 0.680502 | 2_3:+23823117 | None:intergenic |
| TGATACCACGTGCATCTGTG+TGG | 0.685481 | 2_3:-23823759 | Msa0284850:CDS |
| CTAAACTTTACATATCCGGG+TGG | 0.712460 | 2_3:+23822892 | None:intergenic |
| GCAATCCACACAGATGCACG+TGG | 0.728624 | 2_3:+23823754 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATCATATTTTATTATCA+GGG | + | chr2_3:23824005-23824024 | None:intergenic | 10.0% |
| !!! | ATAAATCATATTTTATTATC+AGG | + | chr2_3:23824006-23824025 | None:intergenic | 10.0% |
| !! | TACTAAAAAAAAAAAAAACT+AGG | + | chr2_3:23824215-23824234 | None:intergenic | 10.0% |
| !! | TACTATTTATCTTCTTTAAA+AGG | - | chr2_3:23823500-23823519 | Msa0284850:intron | 15.0% |
| !! | ATAATTATTATTCCTGATAT+TGG | + | chr2_3:23823571-23823590 | None:intergenic | 15.0% |
| !! | TAATAACTAATAAGTCAATA+TGG | + | chr2_3:23823716-23823735 | None:intergenic | 15.0% |
| !!! | AAATCATATTTTATTATCAG+GGG | + | chr2_3:23824004-23824023 | None:intergenic | 15.0% |
| !! | TAAGTATATGTAAAATTGTA+GGG | - | chr2_3:23824529-23824548 | Msa0284850:intron | 15.0% |
| !!! | TTTTCTTTTTTTTGTAGAAT+AGG | + | chr2_3:23824638-23824657 | None:intergenic | 15.0% |
| !!! | ATATAGCTTCTTTTTTTTAT+TGG | - | chr2_3:23824777-23824796 | Msa0284850:intron | 15.0% |
| !!! | ACCTTACAAAGAAAATTTTT+TGG | - | chr2_3:23823055-23823074 | Msa0284850:intron | 20.0% |
| !!! | TCCAAAAAATTTTCTTTGTA+AGG | + | chr2_3:23823059-23823078 | None:intergenic | 20.0% |
| !!! | AAAATTTTTTGGATGAAGTT+CGG | - | chr2_3:23823066-23823085 | Msa0284850:intron | 20.0% |
| !! | AAAGAAGATAAATAGTAGAA+GGG | + | chr2_3:23823497-23823516 | None:intergenic | 20.0% |
| !! | TAAAGAAGATAAATAGTAGA+AGG | + | chr2_3:23823498-23823517 | None:intergenic | 20.0% |
| !! | AAAAACAAGTCATGTAAAAT+TGG | - | chr2_3:23823632-23823651 | Msa0284850:intron | 20.0% |
| !! | TAATAAGTCAATATGGAAAA+AGG | + | chr2_3:23823709-23823728 | None:intergenic | 20.0% |
| !! | ATGTATGTATATATGCAAAT+TGG | - | chr2_3:23823960-23823979 | Msa0284850:intron | 20.0% |
| !! | GTAAGTATATGTAAAATTGT+AGG | - | chr2_3:23824528-23824547 | Msa0284850:intron | 20.0% |
| !! | AAAAAAAAGAAAAAAGAGAC+TGG | - | chr2_3:23824645-23824664 | Msa0284850:intron | 20.0% |
| !! | TTAAAGAAAACATTTACCTT+CGG | + | chr2_3:23825343-23825362 | None:intergenic | 20.0% |
| !! | GAATGAACATATACATAATT+AGG | + | chr2_3:23825405-23825424 | None:intergenic | 20.0% |
| ! | AGTTCAAGAGGAAAAAATAA+TGG | - | chr2_3:23822768-23822787 | Msa0284850:CDS | 25.0% |
| ! | AATAATCACTTTCTTTCTTC+AGG | - | chr2_3:23822908-23822927 | Msa0284850:CDS | 25.0% |
| ! | CAATATAACTGACAAAACTT+TGG | + | chr2_3:23822974-23822993 | None:intergenic | 25.0% |
| !!! | CAAAGTTTTGTCAGTTATAT+TGG | - | chr2_3:23822972-23822991 | Msa0284850:CDS | 25.0% |
| ! | TTCCAATTAGTATGGAAAAT+TGG | - | chr2_3:23823015-23823034 | Msa0284850:intron | 25.0% |
| !!! | AAATTTTTTGGATGAAGTTC+GGG | - | chr2_3:23823067-23823086 | Msa0284850:intron | 25.0% |
| !! | TTGCAGAAAGTTTTCATATT+TGG | - | chr2_3:23823170-23823189 | Msa0284850:CDS | 25.0% |
| ! | AAAAACATTACCTGAAATTC+AGG | + | chr2_3:23823377-23823396 | None:intergenic | 25.0% |
| ! | ACATATCTGATAAACATACA+AGG | + | chr2_3:23824358-23824377 | None:intergenic | 25.0% |
| ! | TGTATATGTTCATTCACTAT+TGG | - | chr2_3:23825410-23825429 | Msa0284850:CDS | 25.0% |
| ! | TCATGGCAAATTATATAACA+CGG | - | chr2_3:23825491-23825510 | Msa0284850:CDS | 25.0% |
| ! | AATCCTAAACTTTACATATC+CGG | + | chr2_3:23825550-23825569 | None:intergenic | 25.0% |
| ! | GCAATTGAATCTTGTTAAAT+TGG | - | chr2_3:23825665-23825684 | Msa0284850:CDS | 25.0% |
| GGAAAAAATAATGGTAAACG+TGG | - | chr2_3:23822777-23822796 | Msa0284850:CDS | 30.0% | |
| ATTCATAAAGCTAAAAGTCG+TGG | - | chr2_3:23822819-23822838 | Msa0284850:CDS | 30.0% | |
| !!! | ATACTTTTGAGGTAACTAGT+TGG | - | chr2_3:23822844-23822863 | Msa0284850:CDS | 30.0% |
| ! | CTCCAATTTTCCATACTAAT+TGG | + | chr2_3:23823020-23823039 | None:intergenic | 30.0% |
| GCATGAAAATCGTGTAAAAA+TGG | - | chr2_3:23823199-23823218 | Msa0284850:CDS | 30.0% | |
| !!! | GGCATTACTACAATTTTTTC+TGG | + | chr2_3:23823411-23823430 | None:intergenic | 30.0% |
| TAAATAGTAGAAGGGTTGTT+AGG | + | chr2_3:23823489-23823508 | None:intergenic | 30.0% | |
| TGCATAATTGCGTGATATAT+AGG | - | chr2_3:23823534-23823553 | Msa0284850:intron | 30.0% | |
| GTAAACTAAACACCAATATC+AGG | - | chr2_3:23823556-23823575 | Msa0284850:intron | 30.0% | |
| TGTTCAATTTCTATCCATGT+GGG | + | chr2_3:23823770-23823789 | None:intergenic | 30.0% | |
| ATGTTCAATTTCTATCCATG+TGG | + | chr2_3:23823771-23823790 | None:intergenic | 30.0% | |
| TGTATGTATGGGAAATACTT+TGG | - | chr2_3:23823821-23823840 | Msa0284850:intron | 30.0% | |
| ! | GTGAAACTATTTTCCAACAT+TGG | - | chr2_3:23824029-23824048 | Msa0284850:intron | 30.0% |
| !! | CTTTATTTCTTTTTGCCTCT+AGG | - | chr2_3:23824060-23824079 | Msa0284850:intron | 30.0% |
| AGGAAAATGAATATCTGACT+TGG | + | chr2_3:23824095-23824114 | None:intergenic | 30.0% | |
| CCAAGAATCAACTAATAAGA+TGG | + | chr2_3:23824176-23824195 | None:intergenic | 30.0% | |
| ! | CCATCTTATTAGTTGATTCT+TGG | - | chr2_3:23824173-23824192 | Msa0284850:intron | 30.0% |
| CAGTTATTGTGAACAAAACT+AGG | + | chr2_3:23824241-23824260 | None:intergenic | 30.0% | |
| ATCTGATAAACATACAAGGT+CGG | + | chr2_3:23824354-23824373 | None:intergenic | 30.0% | |
| ! | GATTTTCTATATGGATGTCT+AGG | + | chr2_3:23824474-23824493 | None:intergenic | 30.0% |
| GACATCCATATAGAAAATCA+CGG | - | chr2_3:23824475-23824494 | Msa0284850:intron | 30.0% | |
| AAAGTTCAGAAACATGAAAG+AGG | - | chr2_3:23824832-23824851 | Msa0284850:intron | 30.0% | |
| TCGTAATGATGTTCTTCAAT+TGG | - | chr2_3:23824938-23824957 | Msa0284850:intron | 30.0% | |
| !! | GTATTTTGGAAGATGTTCTA+AGG | + | chr2_3:23824964-23824983 | None:intergenic | 30.0% |
| AACAACCAGATTTGATTCAA+AGG | - | chr2_3:23825266-23825285 | Msa0284850:intron | 30.0% | |
| TCTATCCTTTGAATCAAATC+TGG | + | chr2_3:23825274-23825293 | None:intergenic | 30.0% | |
| !! | TGTTCATTCACTATTGGTTT+AGG | - | chr2_3:23825416-23825435 | Msa0284850:CDS | 30.0% |
| !! | GTTCATTCACTATTGGTTTA+GGG | - | chr2_3:23825417-23825436 | Msa0284850:CDS | 30.0% |
| CATGGCAAATTATATAACAC+GGG | - | chr2_3:23825492-23825511 | Msa0284850:CDS | 30.0% | |
| ATCCTAAACTTTACATATCC+GGG | + | chr2_3:23825549-23825568 | None:intergenic | 30.0% | |
| ! | CTTTCTTTCTTCAGGTTCAA+TGG | - | chr2_3:23822916-23822935 | Msa0284850:CDS | 35.0% |
| AATCGTGTAAAAATGGAAGC+TGG | - | chr2_3:23823206-23823225 | Msa0284850:CDS | 35.0% | |
| ! | GAAGGTTTTACAATGTCTTC+AGG | + | chr2_3:23823290-23823309 | None:intergenic | 35.0% |
| CAGCACATCATATGTTAACT+TGG | - | chr2_3:23823441-23823460 | Msa0284850:intron | 35.0% | |
| GTTCAATTTCTATCCATGTG+GGG | + | chr2_3:23823769-23823788 | None:intergenic | 35.0% | |
| TGCTGTAGACATGTATGTAT+GGG | - | chr2_3:23823810-23823829 | Msa0284850:intron | 35.0% | |
| CATTAAATCCTGGCCATTAA+TGG | + | chr2_3:23823923-23823942 | None:intergenic | 35.0% | |
| CATTAATGGCCAGGATTTAA+TGG | - | chr2_3:23823921-23823940 | Msa0284850:intron | 35.0% | |
| ACTAAGTACGACATTGTGAT+AGG | + | chr2_3:23824115-23824134 | None:intergenic | 35.0% | |
| ! | TGTAGAGCTTTGTGTAACTT+AGG | + | chr2_3:23824306-23824325 | None:intergenic | 35.0% |
| TTGTAGCTTAGTGTTCTTTC+AGG | - | chr2_3:23824382-23824401 | Msa0284850:intron | 35.0% | |
| TCCATATAGAAAATCACGGA+TGG | - | chr2_3:23824479-23824498 | Msa0284850:intron | 35.0% | |
| CCATATAGAAAATCACGGAT+GGG | - | chr2_3:23824480-23824499 | Msa0284850:intron | 35.0% | |
| AAAGAAAAAAGAGACTGGAG+AGG | - | chr2_3:23824650-23824669 | Msa0284850:intron | 35.0% | |
| GAACATCTTCCAAAATACTC+TGG | - | chr2_3:23824966-23824985 | Msa0284850:intron | 35.0% | |
| TGTCGTGGAAAAATGTCTTT+GGG | + | chr2_3:23825023-23825042 | None:intergenic | 35.0% | |
| TTGTCGTGGAAAAATGTCTT+TGG | + | chr2_3:23825024-23825043 | None:intergenic | 35.0% | |
| GATGAAGTGAATGCAATGTT+TGG | - | chr2_3:23825056-23825075 | Msa0284850:intron | 35.0% | |
| TGGCAAAATGAGTAAGAGAA+TGG | - | chr2_3:23825076-23825095 | Msa0284850:CDS | 35.0% | |
| AATGGAGTTACTAGAGAGAT+TGG | - | chr2_3:23825094-23825113 | Msa0284850:CDS | 35.0% | |
| AGTCAACTTGAACAGAATGA+TGG | - | chr2_3:23825229-23825248 | Msa0284850:CDS | 35.0% | |
| GAAAACATTTACCTTCGGAA+TGG | + | chr2_3:23825338-23825357 | None:intergenic | 35.0% | |
| ATTGGTCGATGAACATCAAA+AGG | - | chr2_3:23825683-23825702 | Msa0284850:CDS | 35.0% | |
| ! | AATGGTGGAAGTAGTTCAAG+AGG | - | chr2_3:23822756-23822775 | Msa0284850:CDS | 40.0% |
| TTTATGAATCACTCGCATGC+GGG | + | chr2_3:23822808-23822827 | None:intergenic | 40.0% | |
| CTTTATGAATCACTCGCATG+CGG | + | chr2_3:23822809-23822828 | None:intergenic | 40.0% | |
| ! | AAGTCGTGGAGATACTTTTG+AGG | - | chr2_3:23822833-23822852 | Msa0284850:CDS | 40.0% |
| !!! | CTTTGGCTTTCTTTTCCAAC+TGG | + | chr2_3:23822957-23822976 | None:intergenic | 40.0% |
| ATATTGGATGCATCGTTCGT+CGG | - | chr2_3:23822988-23823007 | Msa0284850:CDS | 40.0% | |
| GTGTAAAAATGGAAGCTGGA+AGG | - | chr2_3:23823210-23823229 | Msa0284850:CDS | 40.0% | |
| CACATAGACTCTTGTCAATG+TGG | + | chr2_3:23823255-23823274 | None:intergenic | 40.0% | |
| ATGATGTGCTGCAAATCACT+AGG | + | chr2_3:23823432-23823451 | None:intergenic | 40.0% | |
| ATAGTAGAAGGGTTGTTAGG+TGG | + | chr2_3:23823486-23823505 | None:intergenic | 40.0% | |
| GTGCTGTAGACATGTATGTA+TGG | - | chr2_3:23823809-23823828 | Msa0284850:intron | 40.0% | |
| GACACCATACCATTAGATCT+AGG | - | chr2_3:23823854-23823873 | Msa0284850:intron | 40.0% | |
| AATGTGTGGCCTAGATCTAA+TGG | + | chr2_3:23823866-23823885 | None:intergenic | 40.0% | |
| ACACACACTTGAACAATGTG+TGG | + | chr2_3:23823880-23823899 | None:intergenic | 40.0% | |
| TACATACATGAGCAGCACTT+GGG | + | chr2_3:23823949-23823968 | None:intergenic | 40.0% | |
| ATACATACATGAGCAGCACT+TGG | + | chr2_3:23823950-23823969 | None:intergenic | 40.0% | |
| TAAAGTGAGTGTGCCAATGT+TGG | + | chr2_3:23824045-23824064 | None:intergenic | 40.0% | |
| ! | CCCATCCGTGATTTTCTATA+TGG | + | chr2_3:23824483-23824502 | None:intergenic | 40.0% |
| TAGAAAATCACGGATGGGAT+TGG | - | chr2_3:23824485-23824504 | Msa0284850:intron | 40.0% | |
| AGAAAATCACGGATGGGATT+GGG | - | chr2_3:23824486-23824505 | Msa0284850:intron | 40.0% | |
| CAGAGAAGTCAAAGCAAAGA+AGG | + | chr2_3:23824605-23824624 | None:intergenic | 40.0% | |
| GGATGGAGTGATTGATAAAG+AGG | - | chr2_3:23824719-23824738 | Msa0284850:intron | 40.0% | |
| AGAGGAAGTTCAGAAAGTTG+CGG | - | chr2_3:23824737-23824756 | Msa0284850:intron | 40.0% | |
| TTGCTTGTCAATGTCACAGA+AGG | - | chr2_3:23824869-23824888 | Msa0284850:intron | 40.0% | |
| TCTTTACCTGAAGATGAGAG+AGG | - | chr2_3:23824903-23824922 | Msa0284850:intron | 40.0% | |
| ! | TCTTTTCCTCTCTCATCTTC+AGG | + | chr2_3:23824912-23824931 | None:intergenic | 40.0% |
| GAAGAACATCATTACGACCA+AGG | + | chr2_3:23824935-23824954 | None:intergenic | 40.0% | |
| AAAATACTCTGGCCGTGTTA+GGG | - | chr2_3:23824977-23824996 | Msa0284850:intron | 40.0% | |
| CAAAACCATAACCCCTAACA+CGG | + | chr2_3:23824992-23825011 | None:intergenic | 40.0% | |
| ! | GTGTTAGGGGTTATGGTTTT+GGG | - | chr2_3:23824991-23825010 | Msa0284850:intron | 40.0% |
| !! | TGTTAGGGGTTATGGTTTTG+GGG | - | chr2_3:23824992-23825011 | Msa0284850:intron | 40.0% |
| ATTGCATTCACTTCATCGAC+GGG | + | chr2_3:23825053-23825072 | None:intergenic | 40.0% | |
| CATTGCATTCACTTCATCGA+CGG | + | chr2_3:23825054-23825073 | None:intergenic | 40.0% | |
| !! | TAGAGAGATTGGTGTTAGAG+AGG | - | chr2_3:23825105-23825124 | Msa0284850:CDS | 40.0% |
| GATGGAGATACTAGAGAGAA+TGG | - | chr2_3:23825137-23825156 | Msa0284850:CDS | 40.0% | |
| AGGCAACAACCAAAACTTGT+CGG | - | chr2_3:23825202-23825221 | Msa0284850:CDS | 40.0% | |
| ! | TGACTTTCTCCGACAAGTTT+TGG | + | chr2_3:23825214-23825233 | None:intergenic | 40.0% |
| CAACTTGAACAGAATGATGG+TGG | - | chr2_3:23825232-23825251 | Msa0284850:CDS | 40.0% | |
| CACAACAAGAAATTACCACC+CGG | - | chr2_3:23825528-23825547 | Msa0284850:intron | 40.0% | |
| CTAAACTTTACATATCCGGG+TGG | + | chr2_3:23825546-23825565 | None:intergenic | 40.0% | |
| CACCCGGATATGTAAAGTTT+AGG | - | chr2_3:23825544-23825563 | Msa0284850:intron | 40.0% | |
| ! | GATTGATGTTGCTGTTGAGA+GGG | - | chr2_3:23825566-23825585 | Msa0284850:intron | 40.0% |
| TTGCCTATACCTGTTGAAGA+AGG | - | chr2_3:23825597-23825616 | Msa0284850:intron | 40.0% | |
| TCTCCTTCTTCAACAGGTAT+AGG | + | chr2_3:23825603-23825622 | None:intergenic | 40.0% | |
| AAGACATCTCCTTCTTCAAC+AGG | + | chr2_3:23825609-23825628 | None:intergenic | 40.0% | |
| ! | TTGACTGTTGGTGAAGCAAT+AGG | - | chr2_3:23825627-23825646 | Msa0284850:CDS | 40.0% |
| ! | TGACTGTTGGTGAAGCAATA+GGG | - | chr2_3:23825628-23825647 | Msa0284850:CDS | 40.0% |
| TGAAGCAATAGGGACATTTG+TGG | - | chr2_3:23825638-23825657 | Msa0284850:CDS | 40.0% | |
| CAGGTTCAATGGAATGCTCT+AGG | - | chr2_3:23822927-23822946 | Msa0284850:CDS | 45.0% | |
| ! | AATGCTCTAGGTCAACCAGT+TGG | - | chr2_3:23822939-23822958 | Msa0284850:CDS | 45.0% |
| ! | TCGGCTGGTTCCAATTAGTA+TGG | - | chr2_3:23823007-23823026 | Msa0284850:intron | 45.0% |
| TGGGGATACGTATCATTCGA+AGG | + | chr2_3:23823308-23823327 | None:intergenic | 45.0% | |
| TACGTATCCCCACATAGAAC+CGG | - | chr2_3:23823316-23823335 | Msa0284850:intron | 45.0% | |
| AGTGAGACGTTGAGCTACAA+AGG | + | chr2_3:23823354-23823373 | None:intergenic | 45.0% | |
| ACGTCTCACTCCTGAATTTC+AGG | - | chr2_3:23823364-23823383 | Msa0284850:intron | 45.0% | |
| AATTTAGTAGCAGCCCCACA+TGG | - | chr2_3:23823753-23823772 | Msa0284850:CDS | 45.0% | |
| GTGGCCTAGATCTAATGGTA+TGG | + | chr2_3:23823861-23823880 | None:intergenic | 45.0% | |
| TGTGTGTGATGTGTGTGTGT+GGG | - | chr2_3:23823895-23823914 | Msa0284850:intron | 45.0% | |
| !! | ACTTGGGTGCCATTAAATCC+TGG | + | chr2_3:23823933-23823952 | None:intergenic | 45.0% |
| ! | ACTTGGCATCTAGAACCTAG+AGG | + | chr2_3:23824078-23824097 | None:intergenic | 45.0% |
| GGGTCGTCTCGAAGAAAATA+TGG | - | chr2_3:23824506-23824525 | Msa0284850:intron | 45.0% | |
| CACTCCATCCTTACCAACAT+GGG | + | chr2_3:23824709-23824728 | None:intergenic | 45.0% | |
| TCACTCCATCCTTACCAACA+TGG | + | chr2_3:23824710-23824729 | None:intergenic | 45.0% | |
| GATGAGAGAGGAAAAGACCT+TGG | - | chr2_3:23824915-23824934 | Msa0284850:intron | 45.0% | |
| !! | CTAACACGGCCAGAGTATTT+TGG | + | chr2_3:23824978-23824997 | None:intergenic | 45.0% |
| CAAAATACTCTGGCCGTGTT+AGG | - | chr2_3:23824976-23824995 | Msa0284850:intron | 45.0% | |
| AAATACTCTGGCCGTGTTAG+GGG | - | chr2_3:23824978-23824997 | Msa0284850:intron | 45.0% | |
| ! | CGTGTTAGGGGTTATGGTTT+TGG | - | chr2_3:23824990-23825009 | Msa0284850:intron | 45.0% |
| TTGCATTCACTTCATCGACG+GGG | + | chr2_3:23825052-23825071 | None:intergenic | 45.0% | |
| TTAGAGAGGCAGACTCATGA+TGG | - | chr2_3:23825119-23825138 | Msa0284850:CDS | 45.0% | |
| !! | AACAGAATGATGGTGGAGAG+AGG | - | chr2_3:23825239-23825258 | Msa0284850:CDS | 45.0% |
| AAGAGGGCTGCAAGAATCTT+TGG | + | chr2_3:23825305-23825324 | None:intergenic | 45.0% | |
| TGCCATGAGCAACCAAATGT+CGG | + | chr2_3:23825479-23825498 | None:intergenic | 45.0% | |
| ! | GGATTGATGTTGCTGTTGAG+AGG | - | chr2_3:23825565-23825584 | Msa0284850:intron | 45.0% |
| GAAGGAGATGTCTTGACTGT+TGG | - | chr2_3:23825615-23825634 | Msa0284850:CDS | 45.0% | |
| CAATAGGGACATTTGTGGCA+TGG | - | chr2_3:23825643-23825662 | Msa0284850:CDS | 45.0% | |
| CAATGCTCCGGTTCTATGTG+GGG | + | chr2_3:23823326-23823345 | None:intergenic | 50.0% | |
| CCAATGCTCCGGTTCTATGT+GGG | + | chr2_3:23823327-23823346 | None:intergenic | 50.0% | |
| ! | CCACATAGAACCGGAGCATT+GGG | - | chr2_3:23823325-23823344 | Msa0284850:intron | 50.0% |
| !! | ACAAAGGCATCCCAATGCTC+CGG | + | chr2_3:23823338-23823357 | None:intergenic | 50.0% |
| GGGCTGCTACTAAATTACGC+AGG | + | chr2_3:23823749-23823768 | None:intergenic | 50.0% | |
| GTGTGTGTGATGTGTGTGTG+TGG | - | chr2_3:23823894-23823913 | Msa0284850:intron | 50.0% | |
| !! | GTGTGTGTGGGTGCCATTAA+TGG | - | chr2_3:23823907-23823926 | Msa0284850:intron | 50.0% |
| TGATACCACGTGCATCTGTG+TGG | - | chr2_3:23824676-23824695 | Msa0284850:intron | 50.0% | |
| GATTGCTGCCCATGTTGGTA+AGG | - | chr2_3:23824698-23824717 | Msa0284850:intron | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr2_3:23825182-23825201 | Msa0284850:CDS | 50.0% | |
| GAATGGCGTCAAGTGCAAGA+GGG | + | chr2_3:23825321-23825340 | None:intergenic | 50.0% | |
| ATCATCCCCATGCCGACATT+TGG | - | chr2_3:23825464-23825483 | Msa0284850:CDS | 50.0% | |
| AGCAACCAAATGTCGGCATG+GGG | + | chr2_3:23825472-23825491 | None:intergenic | 50.0% | |
| GAGCAACCAAATGTCGGCAT+GGG | + | chr2_3:23825473-23825492 | None:intergenic | 50.0% | |
| TGAGCAACCAAATGTCGGCA+TGG | + | chr2_3:23825474-23825493 | None:intergenic | 50.0% | |
| TGCCGACATTTGGTTGCTCA+TGG | - | chr2_3:23825474-23825493 | Msa0284850:CDS | 50.0% | |
| CCCACATAGAACCGGAGCAT+TGG | - | chr2_3:23823324-23823343 | Msa0284850:intron | 55.0% | |
| CCCAATGCTCCGGTTCTATG+TGG | + | chr2_3:23823328-23823347 | None:intergenic | 55.0% | |
| !! | TGTGGGTGCCATTAATGGCC+AGG | - | chr2_3:23823912-23823931 | Msa0284850:intron | 55.0% |
| GCAATCCACACAGATGCACG+TGG | + | chr2_3:23824684-23824703 | None:intergenic | 55.0% | |
| ! | GTGTGGATTGCTGCCCATGT+TGG | - | chr2_3:23824693-23824712 | Msa0284850:intron | 55.0% |
| ! | GCTGCCCATGTTGGTAAGGA+TGG | - | chr2_3:23824702-23824721 | Msa0284850:intron | 55.0% |
| TCTGGCCGTGTTAGGGGTTA+TGG | - | chr2_3:23824984-23825003 | Msa0284850:intron | 55.0% | |
| TCGACGGGGATAGATTGTCG+TGG | + | chr2_3:23825038-23825057 | None:intergenic | 55.0% | |
| GGAATGGCGTCAAGTGCAAG+AGG | + | chr2_3:23825322-23825341 | None:intergenic | 55.0% | |
| TGCACTTGACGCCATTCCGA+AGG | - | chr2_3:23825324-23825343 | Msa0284850:intron | 55.0% | |
| TGGATGCATCGTTCGTCGGC+TGG | - | chr2_3:23822992-23823011 | Msa0284850:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 23822744 | 23825713 | 23822744 | ID=Msa0284850;Name=Msa0284850 |
| chr2_3 | mRNA | 23822744 | 23825713 | 23822744 | ID=Msa0284850-mRNA-1;Parent=Msa0284850;Name=Msa0284850-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|0.83|0.6|0.83|6|0|343 |
| chr2_3 | exon | 23825603 | 23825713 | 23825603 | ID=Msa0284850-mRNA-1:exon:9073;Parent=Msa0284850-mRNA-1 |
| chr2_3 | exon | 23825369 | 23825527 | 23825369 | ID=Msa0284850-mRNA-1:exon:9072;Parent=Msa0284850-mRNA-1 |
| chr2_3 | exon | 23825072 | 23825281 | 23825072 | ID=Msa0284850-mRNA-1:exon:9071;Parent=Msa0284850-mRNA-1 |
| chr2_3 | exon | 23823690 | 23823803 | 23823690 | ID=Msa0284850-mRNA-1:exon:9070;Parent=Msa0284850-mRNA-1 |
| chr2_3 | exon | 23823112 | 23823273 | 23823112 | ID=Msa0284850-mRNA-1:exon:9069;Parent=Msa0284850-mRNA-1 |
| chr2_3 | exon | 23822744 | 23823019 | 23822744 | ID=Msa0284850-mRNA-1:exon:9068;Parent=Msa0284850-mRNA-1 |
| chr2_3 | CDS | 23825603 | 23825713 | 23825603 | ID=Msa0284850-mRNA-1:cds;Parent=Msa0284850-mRNA-1 |
| chr2_3 | CDS | 23825369 | 23825527 | 23825369 | ID=Msa0284850-mRNA-1:cds;Parent=Msa0284850-mRNA-1 |
| chr2_3 | CDS | 23825072 | 23825281 | 23825072 | ID=Msa0284850-mRNA-1:cds;Parent=Msa0284850-mRNA-1 |
| chr2_3 | CDS | 23823690 | 23823803 | 23823690 | ID=Msa0284850-mRNA-1:cds;Parent=Msa0284850-mRNA-1 |
| chr2_3 | CDS | 23823112 | 23823273 | 23823112 | ID=Msa0284850-mRNA-1:cds;Parent=Msa0284850-mRNA-1 |
| chr2_3 | CDS | 23822744 | 23823019 | 23822744 | ID=Msa0284850-mRNA-1:cds;Parent=Msa0284850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
