Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0917600 | AES60129.2 | 82.326 | 215 | 33 | 3 | 224 | 436 | 26 | 237 | 3.01e-109 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0604350 | Msa0917600 | 0.801928 | 7.142670e-49 | -8.615850e-47 |
| Msa0623520 | Msa0917600 | 0.800537 | 1.376056e-48 | -8.615850e-47 |
| Msa0623670 | Msa0917600 | 0.821030 | 5.012868e-53 | -8.615850e-47 |
| Msa0674790 | Msa0917600 | 0.801369 | 9.301015e-49 | -8.615850e-47 |
| Msa0726140 | Msa0917600 | 0.802211 | 6.248067e-49 | -8.615850e-47 |
| Msa0729800 | Msa0917600 | 0.809872 | 1.526123e-50 | -8.615850e-47 |
| Msa0745060 | Msa0917600 | 0.804374 | 2.227582e-49 | -8.615850e-47 |
| Msa0394970 | Msa0917600 | 0.812340 | 4.454406e-51 | -8.615850e-47 |
| Msa0284850 | Msa0917600 | 0.854717 | 1.021877e-61 | -8.615850e-47 |
| Msa0290870 | Msa0917600 | 0.818039 | 2.412934e-52 | -8.615850e-47 |
| Msa0846330 | Msa0917600 | 0.801787 | 7.637588e-49 | -8.615850e-47 |
| Msa0855300 | Msa0917600 | 0.835295 | 1.823956e-56 | -8.615850e-47 |
| Msa0917600 | Msa1024240 | 0.800405 | 1.463728e-48 | -8.615850e-47 |
| Msa0917600 | Msa1187940 | 0.802004 | 6.890329e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0917600 | MtrunA17_Chr2g0307151 | 35.492 | 386 | 167 | 7 | 89 | 436 | 6 | 347 | 2.10e-63 | 211 |
| Msa0917600 | MtrunA17_Chr6g0466851 | 26.833 | 600 | 287 | 16 | 3 | 457 | 24 | 616 | 4.57e-47 | 175 |
| Msa0917600 | MtrunA17_Chr5g0420271 | 40.331 | 181 | 98 | 3 | 185 | 355 | 227 | 407 | 1.50e-29 | 120 |
| Msa0917600 | MtrunA17_Chr5g0420271 | 35.294 | 204 | 91 | 6 | 1 | 201 | 1 | 166 | 9.69e-25 | 106 |
| Msa0917600 | MtrunA17_Chr2g0305931 | 32.906 | 234 | 117 | 6 | 154 | 348 | 5 | 237 | 7.38e-23 | 97.8 |
| Msa0917600 | MtrunA17_Chr4g0024831 | 60.526 | 76 | 30 | 0 | 65 | 140 | 1 | 76 | 4.11e-21 | 88.2 |
| Msa0917600 | MtrunA17_Chr5g0420281 | 49.231 | 65 | 28 | 2 | 436 | 499 | 6 | 66 | 2.31e-14 | 68.9 |
| Msa0917600 | MtrunA17_Chr7g0227751 | 26.984 | 252 | 107 | 6 | 278 | 457 | 2 | 248 | 2.50e-13 | 72.0 |
| Msa0917600 | MtrunA17_Chr8g0343271 | 26.667 | 240 | 101 | 7 | 289 | 457 | 2 | 237 | 5.38e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 106 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATGGACAATGTTATATT+TGG | 0.181682 | 6_2:-42442957 | Msa0917600:CDS |
| ATAACATTGTCCATGTAAAT+TGG | 0.205829 | 6_2:+42442963 | None:intergenic |
| ATGATTTGCCTCTCAGATTT+TGG | 0.223190 | 6_2:-42441452 | Msa0917600:CDS |
| ACGTCTCACTCCTGAATTTC+AGG | 0.228088 | 6_2:-42444843 | Msa0917600:intron |
| GCAATTGAATCTTGTTAAAT+TGG | 0.231432 | 6_2:-42443252 | Msa0917600:CDS |
| TTCCAATTAGTATGGAAAAT+TGG | 0.270100 | 6_2:-42445192 | Msa0917600:CDS |
| AAGAGCTTGTGCAACATAAT+TGG | 0.275099 | 6_2:-42442896 | Msa0917600:intron |
| TGACTTTCTCCGACAAGTTT+TGG | 0.308285 | 6_2:+42443706 | None:intergenic |
| CTTTCTTTCTTCAGGTTCAA+TGG | 0.308490 | 6_2:-42445291 | Msa0917600:intron |
| AAAGACATTACCTGAAATTC+AGG | 0.313676 | 6_2:+42444833 | None:intergenic |
| GGTGCCTTTACTATCAATAT+TGG | 0.314365 | 6_2:-42441535 | Msa0917600:CDS |
| TCGGCTGGTTCCAATTAGTA+TGG | 0.318264 | 6_2:-42445200 | Msa0917600:CDS |
| TCTTAAACTTGTGTGTCAAT+AGG | 0.329336 | 6_2:+42442578 | None:intergenic |
| AACTGATTCAGCACTACGTT+GGG | 0.333670 | 6_2:+42443082 | None:intergenic |
| TCTATCCTTTGAATCAAATC+TGG | 0.335548 | 6_2:+42443646 | None:intergenic |
| AAGAGGGCTGCAAGAATCTT+TGG | 0.375507 | 6_2:+42443615 | None:intergenic |
| TCTCCTTCTTCAACAGGTAT+AGG | 0.386213 | 6_2:+42443317 | None:intergenic |
| AATCCTAACCTTTACATATC+CGG | 0.395875 | 6_2:+42443370 | None:intergenic |
| ATCATCCCCATGCCAACATT+TGG | 0.397125 | 6_2:-42443453 | Msa0917600:CDS |
| TAACATTGTCCATGTAAATT+GGG | 0.416344 | 6_2:+42442964 | None:intergenic |
| AAATCATTGTATCAGCTCTA+TGG | 0.417216 | 6_2:+42441468 | None:intergenic |
| TGGATGCATCGTTCGTCGGC+TGG | 0.424894 | 6_2:-42445215 | Msa0917600:CDS |
| CAATATAACTGACAAAACTT+TGG | 0.426522 | 6_2:+42445236 | None:intergenic |
| TTGACTGTTGGTGAAGCAAT+AGG | 0.427110 | 6_2:-42443290 | Msa0917600:CDS |
| CCACATAGAACCGGAGCATT+GGG | 0.447151 | 6_2:-42444882 | Msa0917600:CDS |
| GGATGGAGTGATTGATAAAG+AGG | 0.450299 | 6_2:-42444194 | Msa0917600:CDS |
| AAGACATCTCCTTCTTCAAC+AGG | 0.451832 | 6_2:+42443311 | None:intergenic |
| TCAAGGAATGGTACCATAGC+TGG | 0.458564 | 6_2:+42443026 | None:intergenic |
| TTGTCTTCACATAAGTATCA+AGG | 0.481642 | 6_2:+42443009 | None:intergenic |
| ATTGGTCGATGAACATCAAA+AGG | 0.484853 | 6_2:-42443234 | Msa0917600:intron |
| CCCACATAGAACCGGAGCAT+TGG | 0.486223 | 6_2:-42444883 | Msa0917600:CDS |
| ATCCTAACCTTTACATATCC+GGG | 0.487205 | 6_2:+42443371 | None:intergenic |
| GATGGAGATACTAGAGAGAA+TGG | 0.491038 | 6_2:-42443772 | Msa0917600:CDS |
| CCAATGCTCCGGTTCTATGT+GGG | 0.497189 | 6_2:+42444883 | None:intergenic |
| TTGCCTATACCTGTTGAAGA+AGG | 0.500655 | 6_2:-42443320 | Msa0917600:CDS |
| TACTTATGTGAAGACAATAA+TGG | 0.501635 | 6_2:-42443003 | Msa0917600:CDS |
| CCCAATGCTCCGGTTCTATG+TGG | 0.510788 | 6_2:+42444882 | None:intergenic |
| TGCCAACATTTGGTTGCTCA+TGG | 0.514049 | 6_2:-42443443 | Msa0917600:CDS |
| GATTGCTGCCCATGTTGGTA+AGG | 0.514063 | 6_2:-42444215 | Msa0917600:CDS |
| CAGGTTCAATGGAATGCTCT+AGG | 0.525756 | 6_2:-42445280 | Msa0917600:CDS |
| GAGCAACCAAATGTTGGCAT+GGG | 0.527172 | 6_2:+42443447 | None:intergenic |
| TGACTGTTGGTGAAGCAATA+GGG | 0.528262 | 6_2:-42443289 | Msa0917600:CDS |
| AGATAAATGGCTTCAAGTAA+TGG | 0.533827 | 6_2:-42445469 | None:intergenic |
| TGCCATGAGCAACCAAATGT+TGG | 0.535485 | 6_2:+42443441 | None:intergenic |
| TATGTATCCCCACATAGAAC+CGG | 0.539807 | 6_2:-42444891 | Msa0917600:CDS |
| TGAAGCAATAGGGACATTTG+TGG | 0.543469 | 6_2:-42443279 | Msa0917600:CDS |
| AACCACCAGATTTGATTCAA+AGG | 0.548351 | 6_2:-42443651 | Msa0917600:CDS |
| TGTAGAATTAATAGTAGCAA+TGG | 0.548900 | 6_2:-42441494 | Msa0917600:CDS |
| ATATTGGATGCATCGTTCGT+CGG | 0.549916 | 6_2:-42445219 | Msa0917600:CDS |
| TGAGCAACCAAATGTTGGCA+TGG | 0.550312 | 6_2:+42443446 | None:intergenic |
| CACATAGACTCTTGTCAATG+TGG | 0.550998 | 6_2:+42444955 | None:intergenic |
| TTGACCAATATTGATAGTAA+AGG | 0.552159 | 6_2:+42441531 | None:intergenic |
| GCTGCCCATGTTGGTAAGGA+TGG | 0.556998 | 6_2:-42444211 | Msa0917600:CDS |
| ATCCTTTGAATCAAATCTGG+TGG | 0.559014 | 6_2:+42443649 | None:intergenic |
| ACAAAGGCATCCCAATGCTC+CGG | 0.559334 | 6_2:+42444872 | None:intergenic |
| GAAAACATTTACCTTCGGAA+TGG | 0.559486 | 6_2:+42443582 | None:intergenic |
| AATGGTGGAAGTAGTTCAAG+AGG | 0.560046 | 6_2:-42445451 | Msa0917600:CDS |
| TGCACTTGACGCCATTCCGA+AGG | 0.560181 | 6_2:-42443593 | Msa0917600:intron |
| TTTGATCAAGCCTCGTGGGT+TGG | 0.562858 | 6_2:-42442671 | Msa0917600:CDS |
| AGTCAACTTGAACAGAATGA+TGG | 0.564479 | 6_2:-42443688 | Msa0917600:CDS |
| ACAATCAGTCCCAATTTACA+TGG | 0.572574 | 6_2:-42442973 | Msa0917600:CDS |
| TTAGAGAGGCAGACTCGTGA+TGG | 0.573010 | 6_2:-42443790 | Msa0917600:intron |
| TATCCTCGTGAGATAGATGT+GGG | 0.573842 | 6_2:+42442626 | None:intergenic |
| GTGAAGACAATAATGGTCAA+AGG | 0.578657 | 6_2:-42442996 | Msa0917600:CDS |
| CAACTGATTCAGCACTACGT+TGG | 0.583155 | 6_2:+42443081 | None:intergenic |
| CACTCCATCCTTACCAACAT+GGG | 0.583925 | 6_2:+42444207 | None:intergenic |
| CTATCTCACGAGGATAAACA+AGG | 0.584696 | 6_2:-42442619 | Msa0917600:CDS |
| ATTCATAAAGCTAAAAGTCG+TGG | 0.586493 | 6_2:-42445388 | Msa0917600:CDS |
| TTTATGAATCACTCGCATGC+GGG | 0.587439 | 6_2:+42445402 | None:intergenic |
| AAAATTTGATCAAGCCTCGT+GGG | 0.588114 | 6_2:-42442675 | Msa0917600:CDS |
| GAAAACTGTGAAGCCAGCTA+TGG | 0.592231 | 6_2:-42443039 | Msa0917600:CDS |
| GAAAATTTGATCAAGCCTCG+TGG | 0.594365 | 6_2:-42442676 | Msa0917600:CDS |
| AGTGAGACGTTGAGCTACAA+AGG | 0.595851 | 6_2:+42444856 | None:intergenic |
| TTCACATAAGTATCAAGGAA+TGG | 0.596460 | 6_2:+42443014 | None:intergenic |
| CAATAGGGACATTTGTGGCA+TGG | 0.597695 | 6_2:-42443274 | Msa0917600:CDS |
| TGGGGATACATATCATTCGA+AGG | 0.598002 | 6_2:+42444902 | None:intergenic |
| AAAACTCACCCTAAATTGAC+CGG | 0.600406 | 6_2:+42442538 | None:intergenic |
| AACAGAATGATGGTGGAGAG+AGG | 0.602687 | 6_2:-42443678 | Msa0917600:CDS |
| TCACTCCATCCTTACCAACA+TGG | 0.603845 | 6_2:+42444206 | None:intergenic |
| CAATGCTCCGGTTCTATGTG+GGG | 0.604052 | 6_2:+42444884 | None:intergenic |
| CAACTTGAACAGAATGATGG+TGG | 0.604122 | 6_2:-42443685 | Msa0917600:CDS |
| TAAATGGCTTCAAGTAATGG+TGG | 0.604383 | 6_2:-42445466 | Msa0917600:CDS |
| CTTTATGAATCACTCGCATG+CGG | 0.607017 | 6_2:+42445401 | None:intergenic |
| GGATTGATGTTGCTGTTGAG+AGG | 0.609831 | 6_2:-42443352 | Msa0917600:CDS |
| GAAGGAGATGTCTTGACTGT+TGG | 0.612130 | 6_2:-42443302 | Msa0917600:CDS |
| AGGCAACAACCAAAACTTGT+CGG | 0.621046 | 6_2:-42443715 | Msa0917600:CDS |
| GGAATGGCGTCAAGTGCAAG+AGG | 0.621123 | 6_2:+42443598 | None:intergenic |
| GTGTGGATTGCTGCCCATGT+TGG | 0.622777 | 6_2:-42444220 | Msa0917600:CDS |
| GATTGATGTTGCTGTTGAGA+GGG | 0.626189 | 6_2:-42443351 | Msa0917600:CDS |
| CACAACAAGAAATTACCACC+CGG | 0.626978 | 6_2:-42443389 | Msa0917600:CDS |
| TCATGGCAAATTATATAACA+CGG | 0.629389 | 6_2:-42443426 | Msa0917600:CDS |
| CATGGCAAATTATATAACAC+GGG | 0.632665 | 6_2:-42443425 | Msa0917600:CDS |
| TTATCCTCGTGAGATAGATG+TGG | 0.636482 | 6_2:+42442625 | None:intergenic |
| AGAGGAAGTTCAGAAAGTTG+CGG | 0.637868 | 6_2:-42444176 | Msa0917600:CDS |
| AATGCTCTAGGTCAACCAGT+TGG | 0.645736 | 6_2:-42445268 | Msa0917600:CDS |
| ACTGATTCAGCACTACGTTG+GGG | 0.663689 | 6_2:+42443083 | None:intergenic |
| AACTTATTTACCAACCCACG+AGG | 0.672003 | 6_2:+42442661 | None:intergenic |
| ATCCCCACATCTATCTCACG+AGG | 0.676403 | 6_2:-42442629 | Msa0917600:CDS |
| GAATGGCGTCAAGTGCAAGA+GGG | 0.680502 | 6_2:+42443599 | None:intergenic |
| TGATACCACGTGCATCTGTG+TGG | 0.685481 | 6_2:-42444237 | Msa0917600:CDS |
| AGCAACCAAATGTTGGCATG+GGG | 0.697911 | 6_2:+42443448 | None:intergenic |
| TATCTCACGAGGATAAACAA+GGG | 0.704904 | 6_2:-42442618 | Msa0917600:CDS |
| AAATTCTGCCAAAATCTGAG+AGG | 0.712027 | 6_2:+42441444 | None:intergenic |
| GCAATCCACACAGATGCACG+TGG | 0.728624 | 6_2:+42444232 | None:intergenic |
| CTAACCTTTACATATCCGGG+TGG | 0.731735 | 6_2:+42443374 | None:intergenic |
| ATCCTCGTGAGATAGATGTG+GGG | 0.745850 | 6_2:+42442627 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGCTTTTTTTTTTATTAT+TGG | - | chr6_2:42442768-42442787 | Msa0917600:intron | 10.0% |
| !!! | TATATACTTGTTTTATTATT+TGG | - | chr6_2:42443733-42443752 | Msa0917600:CDS | 10.0% |
| !! | TAAGTATATGTAAAATTGTA+GGG | - | chr6_2:42442541-42442560 | Msa0917600:intron | 15.0% |
| !!! | TTTTTTTTTGTTTGTAGAAT+AGG | + | chr6_2:42442619-42442638 | None:intergenic | 15.0% |
| !! | GAAATATATGTAAATTATGA+TGG | - | chr6_2:42444446-42444465 | Msa0917600:intron | 15.0% |
| !! | ATTTATGAAAGAGATAATAT+TGG | - | chr6_2:42444892-42444911 | Msa0917600:CDS | 15.0% |
| !! | TCATATATATATATATAGCT+AGG | - | chr6_2:42444978-42444997 | Msa0917600:CDS | 15.0% |
| !!! | ACCTTACAAAGAAAAAATTT+TGG | - | chr6_2:42441750-42441769 | Msa0917600:intron | 20.0% |
| !!! | TCCAAAATTTTTTCTTTGTA+AGG | + | chr6_2:42441754-42441773 | None:intergenic | 20.0% |
| !!! | AAAAAATTTTGGATGAAGTT+CGG | - | chr6_2:42441761-42441780 | Msa0917600:intron | 20.0% |
| !! | GTAAGTATATGTAAAATTGT+AGG | - | chr6_2:42442540-42442559 | Msa0917600:intron | 20.0% |
| !! | AAAAAAAAGAAAAAAGAGAC+TGG | - | chr6_2:42442634-42442653 | Msa0917600:CDS | 20.0% |
| !! | TTAAAGAAAACATTTACCTT+CGG | + | chr6_2:42443328-42443347 | None:intergenic | 20.0% |
| !! | CTAATTAGTTACAATACTTT+AGG | + | chr6_2:42443766-42443785 | None:intergenic | 20.0% |
| !!! | TCAATTTTTTTAGATTTAGC+TGG | + | chr6_2:42443792-42443811 | None:intergenic | 20.0% |
| !!! | CTGTTTAATAGTTGTTATTT+AGG | - | chr6_2:42444069-42444088 | Msa0917600:intron | 20.0% |
| !! | GATGACTAAATTTAAAAATG+TGG | - | chr6_2:42444407-42444426 | Msa0917600:intron | 20.0% |
| !!! | AGAAATAAAGGTATAATCAA+TGG | - | chr6_2:42444742-42444761 | Msa0917600:intron | 20.0% |
| !!! | AAATCACATACATACATTTT+CGG | + | chr6_2:42444936-42444955 | None:intergenic | 20.0% |
| !!! | CTTTTATATTTGAAGTACTT+TGG | - | chr6_2:42445030-42445049 | Msa0917600:CDS | 20.0% |
| !!! | GAGTTATTTTAAATCGTAAT+TGG | - | chr6_2:42445184-42445203 | Msa0917600:CDS | 20.0% |
| !! | TATTGCTGAAAAACTTAAAT+TGG | - | chr6_2:42445268-42445287 | Msa0917600:CDS | 20.0% |
| !! | ATTGCTGAAAAACTTAAATT+GGG | - | chr6_2:42445269-42445288 | Msa0917600:CDS | 20.0% |
| ! | AGTTCAAGAGGAAAAAATAA+TGG | - | chr6_2:42441463-42441482 | Msa0917600:CDS | 25.0% |
| ! | AATAATCACTTTCTTTCTTC+AGG | - | chr6_2:42441603-42441622 | Msa0917600:intron | 25.0% |
| ! | CAATATAACTGACAAAACTT+TGG | + | chr6_2:42441669-42441688 | None:intergenic | 25.0% |
| !!! | CAAAGTTTTGTCAGTTATAT+TGG | - | chr6_2:42441667-42441686 | Msa0917600:intron | 25.0% |
| ! | TTCCAATTAGTATGGAAAAT+TGG | - | chr6_2:42441710-42441729 | Msa0917600:intron | 25.0% |
| !! | AAAAATTTTGGATGAAGTTC+GGG | - | chr6_2:42441762-42441781 | Msa0917600:intron | 25.0% |
| !! | TTGCAGAAAGTTTTCATATT+TGG | - | chr6_2:42441865-42441884 | Msa0917600:intron | 25.0% |
| ! | AAAGTTCAGAAAAATGAAAG+AGG | - | chr6_2:42442823-42442842 | Msa0917600:intron | 25.0% |
| ! | TTGTAATGATGTTCTTCAAT+TGG | - | chr6_2:42442931-42442950 | Msa0917600:CDS | 25.0% |
| ! | GAATGAACATATACGTAATT+AGG | + | chr6_2:42443390-42443409 | None:intergenic | 25.0% |
| ! | TCATGGCAAATTATATAACA+CGG | - | chr6_2:42443476-42443495 | Msa0917600:CDS | 25.0% |
| ! | GCAATTGAATCTTGTTAAAT+TGG | - | chr6_2:42443650-42443669 | Msa0917600:CDS | 25.0% |
| ! | ATATCACTTATCAATCAGAA+AGG | + | chr6_2:42443716-42443735 | None:intergenic | 25.0% |
| ! | TACTTATGTGAAGACAATAA+TGG | - | chr6_2:42443899-42443918 | Msa0917600:intron | 25.0% |
| ! | TAACATTGTCCATGTAAATT+GGG | + | chr6_2:42443941-42443960 | None:intergenic | 25.0% |
| ! | ATAACATTGTCCATGTAAAT+TGG | + | chr6_2:42443942-42443961 | None:intergenic | 25.0% |
| ! | TACATGGACAATGTTATATT+TGG | - | chr6_2:42443945-42443964 | Msa0917600:intron | 25.0% |
| ! | ATAACAACTATTAAACAGAG+AGG | + | chr6_2:42444067-42444086 | None:intergenic | 25.0% |
| ! | AGCTGAGATGATATATTATA+TGG | - | chr6_2:42444511-42444530 | Msa0917600:intron | 25.0% |
| ! | ATATTATATGGATTCATTGC+CGG | - | chr6_2:42444523-42444542 | Msa0917600:intron | 25.0% |
| !!! | ATACCTTTATTTCTATCCAT+GGG | + | chr6_2:42444736-42444755 | None:intergenic | 25.0% |
| !!! | TATACCTTTATTTCTATCCA+TGG | + | chr6_2:42444737-42444756 | None:intergenic | 25.0% |
| !!! | TTTTTTGACAACGTAATCAA+TGG | - | chr6_2:42444769-42444788 | Msa0917600:intron | 25.0% |
| !!! | GGTATTTTTAATTCATCATG+TGG | - | chr6_2:42444790-42444809 | Msa0917600:intron | 25.0% |
| !! | AATCACATACATACATTTTC+GGG | + | chr6_2:42444935-42444954 | None:intergenic | 25.0% |
| !!! | AACTAGCTTATCTTTAGAAT+AGG | + | chr6_2:42445073-42445092 | None:intergenic | 25.0% |
| ! | TTATTTACAAATTCTGACTC+AGG | - | chr6_2:42445337-42445356 | Msa0917600:intron | 25.0% |
| !! | TTGACCAATATTGATAGTAA+AGG | + | chr6_2:42445374-42445393 | None:intergenic | 25.0% |
| ! | TGTAGAATTAATAGTAGCAA+TGG | - | chr6_2:42445408-42445427 | Msa0917600:CDS | 25.0% |
| GGAAAAAATAATGGTAAACG+TGG | - | chr6_2:42441472-42441491 | Msa0917600:CDS | 30.0% | |
| ATTCATAAAGCTAAAAGTCG+TGG | - | chr6_2:42441514-42441533 | Msa0917600:CDS | 30.0% | |
| !!! | ATACTTTTGAGGTAACTAGT+TGG | - | chr6_2:42441539-42441558 | Msa0917600:intron | 30.0% |
| ! | CTCCAATTTTCCATACTAAT+TGG | + | chr6_2:42441715-42441734 | None:intergenic | 30.0% |
| GCATGAAAATCGTGTAAAAA+TGG | - | chr6_2:42441894-42441913 | Msa0917600:intron | 30.0% | |
| AAAGACATTACCTGAAATTC+AGG | + | chr6_2:42442072-42442091 | None:intergenic | 30.0% | |
| !!! | GGCATTACTACAATTTTTTC+TGG | + | chr6_2:42442106-42442125 | None:intergenic | 30.0% |
| CCAAGAATCAACTAATAAGA+TGG | + | chr6_2:42442182-42442201 | None:intergenic | 30.0% | |
| ! | CCATCTTATTAGTTGATTCT+TGG | - | chr6_2:42442179-42442198 | Msa0917600:intron | 30.0% |
| CAGTTATTGTGAACAAAACT+AGG | + | chr6_2:42442253-42442272 | None:intergenic | 30.0% | |
| ACATATCTGAGAAACATACA+AGG | + | chr6_2:42442370-42442389 | None:intergenic | 30.0% | |
| ! | GATTTTCTATATGGATGTCT+AGG | + | chr6_2:42442486-42442505 | None:intergenic | 30.0% |
| GACATCCATATAGAAAATCA+CGG | - | chr6_2:42442487-42442506 | Msa0917600:intron | 30.0% | |
| !!! | TTATTTTTGCTTGTCACAGA+AGG | - | chr6_2:42442862-42442881 | Msa0917600:intron | 30.0% |
| ! | GTATTTTCGAAGATGTTCTA+AGG | + | chr6_2:42442957-42442976 | None:intergenic | 30.0% |
| TCTATCCTTTGAATCAAATC+TGG | + | chr6_2:42443259-42443278 | None:intergenic | 30.0% | |
| CGTATATGTTCATTCACTAT+TGG | - | chr6_2:42443395-42443414 | Msa0917600:CDS | 30.0% | |
| !! | TGTTCATTCACTATTGGTTT+AGG | - | chr6_2:42443401-42443420 | Msa0917600:CDS | 30.0% |
| !! | GTTCATTCACTATTGGTTTA+GGG | - | chr6_2:42443402-42443421 | Msa0917600:CDS | 30.0% |
| CATGGCAAATTATATAACAC+GGG | - | chr6_2:42443477-42443496 | Msa0917600:CDS | 30.0% | |
| AATCCTAACCTTTACATATC+CGG | + | chr6_2:42443535-42443554 | None:intergenic | 30.0% | |
| ! | ACAGTTTTCATCTTTTTGCT+TGG | + | chr6_2:42443852-42443871 | None:intergenic | 30.0% |
| TTCACATAAGTATCAAGGAA+TGG | + | chr6_2:42443891-42443910 | None:intergenic | 30.0% | |
| TTGTCTTCACATAAGTATCA+AGG | + | chr6_2:42443896-42443915 | None:intergenic | 30.0% | |
| !! | TTGTTATTTAGGACTGTTAG+AGG | - | chr6_2:42444080-42444099 | Msa0917600:intron | 30.0% |
| ! | TGTTATTTAGGACTGTTAGA+GGG | - | chr6_2:42444081-42444100 | Msa0917600:intron | 30.0% |
| ! | TGTTCTGCTATTCCTATTTT+TGG | - | chr6_2:42444138-42444157 | Msa0917600:intron | 30.0% |
| !! | GTTCTGCTATTCCTATTTTT+GGG | - | chr6_2:42444139-42444158 | Msa0917600:intron | 30.0% |
| !! | GTGTTGTTTGTTCTATTTCA+AGG | - | chr6_2:42444194-42444213 | Msa0917600:CDS | 30.0% |
| TCTTAAACTTGTGTGTCAAT+AGG | + | chr6_2:42444327-42444346 | None:intergenic | 30.0% | |
| !! | ATGTAAATTATGATGGATGC+AGG | - | chr6_2:42444453-42444472 | Msa0917600:intron | 30.0% |
| TAATATATCATCTCAGCTCT+GGG | + | chr6_2:42444509-42444528 | None:intergenic | 30.0% | |
| ATAATATATCATCTCAGCTC+TGG | + | chr6_2:42444510-42444529 | None:intergenic | 30.0% | |
| TATTATATGGATTCATTGCC+GGG | - | chr6_2:42444524-42444543 | Msa0917600:intron | 30.0% | |
| !!! | CTTGACTTTGATTTTGACTT+GGG | + | chr6_2:42444707-42444726 | None:intergenic | 30.0% |
| !!! | ACTTGACTTTGATTTTGACT+TGG | + | chr6_2:42444708-42444727 | None:intergenic | 30.0% |
| AATCCCATGGATAGAAATAA+AGG | - | chr6_2:42444730-42444749 | Msa0917600:intron | 30.0% | |
| ! | ATCACATACATACATTTTCG+GGG | + | chr6_2:42444934-42444953 | None:intergenic | 30.0% |
| ! | TTCTAAAGATAAGCTAGTTG+AGG | - | chr6_2:42445074-42445093 | Msa0917600:intron | 30.0% |
| !!! | AATTCTGACTCAGGTTTTTT+AGG | - | chr6_2:42445346-42445365 | Msa0917600:intron | 30.0% |
| AAATCATTGTATCAGCTCTA+TGG | + | chr6_2:42445437-42445456 | None:intergenic | 30.0% | |
| ! | CTTTCTTTCTTCAGGTTCAA+TGG | - | chr6_2:42441611-42441630 | Msa0917600:intron | 35.0% |
| AATCGTGTAAAAATGGAAGC+TGG | - | chr6_2:42441901-42441920 | Msa0917600:intron | 35.0% | |
| ! | GAAGGTTTTACAATGTCTTC+AGG | + | chr6_2:42441985-42442004 | None:intergenic | 35.0% |
| ATCTGAGAAACATACAAGGT+CGG | + | chr6_2:42442366-42442385 | None:intergenic | 35.0% | |
| TTGTAGCTTAGTGTTCTTTC+AGG | - | chr6_2:42442394-42442413 | Msa0917600:intron | 35.0% | |
| TCCATATAGAAAATCACGGA+TGG | - | chr6_2:42442491-42442510 | Msa0917600:intron | 35.0% | |
| CCATATAGAAAATCACGGAT+GGG | - | chr6_2:42442492-42442511 | Msa0917600:intron | 35.0% | |
| AAAGAAAAAAGAGACTGGAG+AGG | - | chr6_2:42442639-42442658 | Msa0917600:CDS | 35.0% | |
| GAAGAACATCATTACAACCA+AGG | + | chr6_2:42442928-42442947 | None:intergenic | 35.0% | |
| GAACATCTTCGAAAATACTC+TGG | - | chr6_2:42442959-42442978 | Msa0917600:CDS | 35.0% | |
| TGTCGTGGAAAAATGTCTTT+GGG | + | chr6_2:42443016-42443035 | None:intergenic | 35.0% | |
| TTGTCGTGGAAAAATGTCTT+TGG | + | chr6_2:42443017-42443036 | None:intergenic | 35.0% | |
| GATGAAGTGAATGCAATGTT+TGG | - | chr6_2:42443049-42443068 | Msa0917600:CDS | 35.0% | |
| TGGCAAAATGAGTAAGAGAA+TGG | - | chr6_2:42443069-42443088 | Msa0917600:CDS | 35.0% | |
| AATGGAGTTACTAGAGAGAT+TGG | - | chr6_2:42443087-42443106 | Msa0917600:CDS | 35.0% | |
| AGTCAACTTGAACAGAATGA+TGG | - | chr6_2:42443214-42443233 | Msa0917600:intron | 35.0% | |
| AACCACCAGATTTGATTCAA+AGG | - | chr6_2:42443251-42443270 | Msa0917600:CDS | 35.0% | |
| ATCCTTTGAATCAAATCTGG+TGG | + | chr6_2:42443256-42443275 | None:intergenic | 35.0% | |
| GAAAACATTTACCTTCGGAA+TGG | + | chr6_2:42443323-42443342 | None:intergenic | 35.0% | |
| ATCCTAACCTTTACATATCC+GGG | + | chr6_2:42443534-42443553 | None:intergenic | 35.0% | |
| ATTGGTCGATGAACATCAAA+AGG | - | chr6_2:42443668-42443687 | Msa0917600:CDS | 35.0% | |
| GTGAAGACAATAATGGTCAA+AGG | - | chr6_2:42443906-42443925 | Msa0917600:intron | 35.0% | |
| ACAATCAGTCCCAATTTACA+TGG | - | chr6_2:42443929-42443948 | Msa0917600:intron | 35.0% | |
| AAGAGCTTGTGCAACATAAT+TGG | - | chr6_2:42444006-42444025 | Msa0917600:intron | 35.0% | |
| AACAACACACTCCCAAAAAT+AGG | + | chr6_2:42444153-42444172 | None:intergenic | 35.0% | |
| !!! | TATTTTTGGGAGTGTGTTGT+TGG | - | chr6_2:42444152-42444171 | Msa0917600:intron | 35.0% |
| AAAATTTGATCAAGCCTCGT+GGG | - | chr6_2:42444227-42444246 | Msa0917600:CDS | 35.0% | |
| TATCTCACGAGGATAAACAA+GGG | - | chr6_2:42444284-42444303 | Msa0917600:intron | 35.0% | |
| !! | GAATAAGCTGATTTTTGCAC+CGG | - | chr6_2:42444345-42444364 | Msa0917600:intron | 35.0% |
| !! | ATTTTTGCACCGGTCAATTT+AGG | - | chr6_2:42444355-42444374 | Msa0917600:intron | 35.0% |
| !! | TTTTTGCACCGGTCAATTTA+GGG | - | chr6_2:42444356-42444375 | Msa0917600:intron | 35.0% |
| AAAACTCACCCTAAATTGAC+CGG | + | chr6_2:42444367-42444386 | None:intergenic | 35.0% | |
| ATTATATGGATTCATTGCCG+GGG | - | chr6_2:42444525-42444544 | Msa0917600:intron | 35.0% | |
| CTTCTTACAACGTCAATCTT+AGG | + | chr6_2:42444557-42444576 | None:intergenic | 35.0% | |
| !!! | TGATTTTGACTTGGGATGAA+GGG | + | chr6_2:42444699-42444718 | None:intergenic | 35.0% |
| !!! | TTGATTTTGACTTGGGATGA+AGG | + | chr6_2:42444700-42444719 | None:intergenic | 35.0% |
| CAAAGTCAAGTATAATCCCA+TGG | - | chr6_2:42444717-42444736 | Msa0917600:intron | 35.0% | |
| !! | TCAATGCCATTAGTTTGCAT+AGG | + | chr6_2:42444851-42444870 | None:intergenic | 35.0% |
| ACTAAGATACTCGACCATAA+AGG | + | chr6_2:42445118-42445137 | None:intergenic | 35.0% | |
| TAAATCGTAATTGGTTGTGC+TGG | - | chr6_2:42445193-42445212 | Msa0917600:CDS | 35.0% | |
| CGTTTCATATTACATGACAC+AGG | - | chr6_2:42445239-42445258 | Msa0917600:CDS | 35.0% | |
| GGTGCCTTTACTATCAATAT+TGG | - | chr6_2:42445367-42445386 | Msa0917600:intron | 35.0% | |
| !! | ATGATTTGCCTCTCAGATTT+TGG | - | chr6_2:42445450-42445469 | Msa0917600:CDS | 35.0% |
| AAATTCTGCCAAAATCTGAG+AGG | + | chr6_2:42445461-42445480 | None:intergenic | 35.0% | |
| ! | AATGGTGGAAGTAGTTCAAG+AGG | - | chr6_2:42441451-42441470 | Msa0917600:CDS | 40.0% |
| TTTATGAATCACTCGCATGC+GGG | + | chr6_2:42441503-42441522 | None:intergenic | 40.0% | |
| CTTTATGAATCACTCGCATG+CGG | + | chr6_2:42441504-42441523 | None:intergenic | 40.0% | |
| ! | AAGTCGTGGAGATACTTTTG+AGG | - | chr6_2:42441528-42441547 | Msa0917600:CDS | 40.0% |
| !!! | CTTTGGCTTTCTTTTCCAAC+TGG | + | chr6_2:42441652-42441671 | None:intergenic | 40.0% |
| ATATTGGATGCATCGTTCGT+CGG | - | chr6_2:42441683-42441702 | Msa0917600:intron | 40.0% | |
| GTGTAAAAATGGAAGCTGGA+AGG | - | chr6_2:42441905-42441924 | Msa0917600:intron | 40.0% | |
| CACATAGACTCTTGTCAATG+TGG | + | chr6_2:42441950-42441969 | None:intergenic | 40.0% | |
| TGGGGATACATATCATTCGA+AGG | + | chr6_2:42442003-42442022 | None:intergenic | 40.0% | |
| TATGTATCCCCACATAGAAC+CGG | - | chr6_2:42442011-42442030 | Msa0917600:intron | 40.0% | |
| ! | TGTAGAGCTTTGTGTAACTC+AGG | + | chr6_2:42442318-42442337 | None:intergenic | 40.0% |
| ! | CCCATCCGTGATTTTCTATA+TGG | + | chr6_2:42442495-42442514 | None:intergenic | 40.0% |
| AGAAAATCACGGATGGGATT+AGG | - | chr6_2:42442498-42442517 | Msa0917600:intron | 40.0% | |
| AGGTCGTCTCGAAGAAAATA+TGG | - | chr6_2:42442518-42442537 | Msa0917600:intron | 40.0% | |
| GGATGGAGTGATTGATAAAG+AGG | - | chr6_2:42442708-42442727 | Msa0917600:intron | 40.0% | |
| AGAGGAAGTTCAGAAAGTTG+CGG | - | chr6_2:42442726-42442745 | Msa0917600:intron | 40.0% | |
| TCTTTACCTGAAGATGAGAG+AGG | - | chr6_2:42442896-42442915 | Msa0917600:intron | 40.0% | |
| ! | TCTTTTCCTCTCTCATCTTC+AGG | + | chr6_2:42442905-42442924 | None:intergenic | 40.0% |
| AAAATACTCTGGCCGTGTTA+GGG | - | chr6_2:42442970-42442989 | Msa0917600:CDS | 40.0% | |
| CAAAACCATAACCCCTAACA+CGG | + | chr6_2:42442985-42443004 | None:intergenic | 40.0% | |
| ! | GTGTTAGGGGTTATGGTTTT+GGG | - | chr6_2:42442984-42443003 | Msa0917600:CDS | 40.0% |
| !! | TGTTAGGGGTTATGGTTTTG+GGG | - | chr6_2:42442985-42443004 | Msa0917600:CDS | 40.0% |
| ATTGCATTCACTTCATCGAC+GGG | + | chr6_2:42443046-42443065 | None:intergenic | 40.0% | |
| CATTGCATTCACTTCATCGA+CGG | + | chr6_2:42443047-42443066 | None:intergenic | 40.0% | |
| !! | TAGAGAGATTGGTGTTAGAG+AGG | - | chr6_2:42443098-42443117 | Msa0917600:CDS | 40.0% |
| GATGGAGATACTAGAGAGAA+TGG | - | chr6_2:42443130-42443149 | Msa0917600:intron | 40.0% | |
| ATGTAGAAAGAGAGAGAGAG+AGG | - | chr6_2:42443167-42443186 | Msa0917600:intron | 40.0% | |
| AGGCAACAACCAAAACTTGT+CGG | - | chr6_2:42443187-42443206 | Msa0917600:intron | 40.0% | |
| ! | TGACTTTCTCCGACAAGTTT+TGG | + | chr6_2:42443199-42443218 | None:intergenic | 40.0% |
| CAACTTGAACAGAATGATGG+TGG | - | chr6_2:42443217-42443236 | Msa0917600:intron | 40.0% | |
| CACAACAAGAAATTACCACC+CGG | - | chr6_2:42443513-42443532 | Msa0917600:intron | 40.0% | |
| ATTACCACCCGGATATGTAA+AGG | - | chr6_2:42443524-42443543 | Msa0917600:intron | 40.0% | |
| ! | GATTGATGTTGCTGTTGAGA+GGG | - | chr6_2:42443551-42443570 | Msa0917600:intron | 40.0% |
| TTGCCTATACCTGTTGAAGA+AGG | - | chr6_2:42443582-42443601 | Msa0917600:intron | 40.0% | |
| TCTCCTTCTTCAACAGGTAT+AGG | + | chr6_2:42443588-42443607 | None:intergenic | 40.0% | |
| AAGACATCTCCTTCTTCAAC+AGG | + | chr6_2:42443594-42443613 | None:intergenic | 40.0% | |
| ! | TTGACTGTTGGTGAAGCAAT+AGG | - | chr6_2:42443612-42443631 | Msa0917600:CDS | 40.0% |
| ! | TGACTGTTGGTGAAGCAATA+GGG | - | chr6_2:42443613-42443632 | Msa0917600:CDS | 40.0% |
| TGAAGCAATAGGGACATTTG+TGG | - | chr6_2:42443623-42443642 | Msa0917600:CDS | 40.0% | |
| ! | AACTGATTCAGCACTACGTT+GGG | + | chr6_2:42443823-42443842 | None:intergenic | 40.0% |
| GGCATATACAACTACAACAG+TGG | + | chr6_2:42444039-42444058 | None:intergenic | 40.0% | |
| CTGTTGTAGTTGTATATGCC+AGG | - | chr6_2:42444039-42444058 | Msa0917600:intron | 40.0% | |
| GAAAATTTGATCAAGCCTCG+TGG | - | chr6_2:42444226-42444245 | Msa0917600:CDS | 40.0% | |
| AACTTATTTACCAACCCACG+AGG | + | chr6_2:42444244-42444263 | None:intergenic | 40.0% | |
| TATCCTCGTGAGATAGATGT+GGG | + | chr6_2:42444279-42444298 | None:intergenic | 40.0% | |
| TTATCCTCGTGAGATAGATG+TGG | + | chr6_2:42444280-42444299 | None:intergenic | 40.0% | |
| CTATCTCACGAGGATAAACA+AGG | - | chr6_2:42444283-42444302 | Msa0917600:intron | 40.0% | |
| ATGGATGCAGGCTAAATCAT+TGG | - | chr6_2:42444465-42444484 | Msa0917600:intron | 40.0% | |
| TGGATGCAGGCTAAATCATT+GGG | - | chr6_2:42444466-42444485 | Msa0917600:intron | 40.0% | |
| TTATATGGATTCATTGCCGG+GGG | - | chr6_2:42444526-42444545 | Msa0917600:intron | 40.0% | |
| !! | CATTAGTTTGCATAGGACAC+TGG | + | chr6_2:42444844-42444863 | None:intergenic | 40.0% |
| CAGTGTCCTATGCAAACTAA+TGG | - | chr6_2:42444842-42444861 | Msa0917600:intron | 40.0% | |
| !! | CAAACTAATGGCATTGACTG+TGG | - | chr6_2:42444854-42444873 | Msa0917600:CDS | 40.0% |
| TTGGTTGTGCTGGAAATTCT+AGG | - | chr6_2:42445203-42445222 | Msa0917600:CDS | 40.0% | |
| TGGGTAAAATGCAACACTGA+TGG | - | chr6_2:42445288-42445307 | Msa0917600:intron | 40.0% | |
| CAGGTTCAATGGAATGCTCT+AGG | - | chr6_2:42441622-42441641 | Msa0917600:intron | 45.0% | |
| ! | AATGCTCTAGGTCAACCAGT+TGG | - | chr6_2:42441634-42441653 | Msa0917600:intron | 45.0% |
| ! | TCGGCTGGTTCCAATTAGTA+TGG | - | chr6_2:42441702-42441721 | Msa0917600:intron | 45.0% |
| AGTGAGACGTTGAGCTACAA+AGG | + | chr6_2:42442049-42442068 | None:intergenic | 45.0% | |
| ACGTCTCACTCCTGAATTTC+AGG | - | chr6_2:42442059-42442078 | Msa0917600:intron | 45.0% | |
| CTTCAGTGCTGCAAATCACA+AGG | + | chr6_2:42442127-42442146 | None:intergenic | 45.0% | |
| CACTCCATCCTTACCAACAT+GGG | + | chr6_2:42442698-42442717 | None:intergenic | 45.0% | |
| TCACTCCATCCTTACCAACA+TGG | + | chr6_2:42442699-42442718 | None:intergenic | 45.0% | |
| GATGAGAGAGGAAAAGACCT+TGG | - | chr6_2:42442908-42442927 | Msa0917600:CDS | 45.0% | |
| GAAAATACTCTGGCCGTGTT+AGG | - | chr6_2:42442969-42442988 | Msa0917600:CDS | 45.0% | |
| AAATACTCTGGCCGTGTTAG+GGG | - | chr6_2:42442971-42442990 | Msa0917600:CDS | 45.0% | |
| ! | CGTGTTAGGGGTTATGGTTT+TGG | - | chr6_2:42442983-42443002 | Msa0917600:CDS | 45.0% |
| TTGCATTCACTTCATCGACG+GGG | + | chr6_2:42443045-42443064 | None:intergenic | 45.0% | |
| !! | AACAGAATGATGGTGGAGAG+AGG | - | chr6_2:42443224-42443243 | Msa0917600:intron | 45.0% |
| AAGAGGGCTGCAAGAATCTT+TGG | + | chr6_2:42443290-42443309 | None:intergenic | 45.0% | |
| ATCATCCCCATGCCAACATT+TGG | - | chr6_2:42443449-42443468 | Msa0917600:CDS | 45.0% | |
| AGCAACCAAATGTTGGCATG+GGG | + | chr6_2:42443457-42443476 | None:intergenic | 45.0% | |
| GAGCAACCAAATGTTGGCAT+GGG | + | chr6_2:42443458-42443477 | None:intergenic | 45.0% | |
| TGAGCAACCAAATGTTGGCA+TGG | + | chr6_2:42443459-42443478 | None:intergenic | 45.0% | |
| TGCCAACATTTGGTTGCTCA+TGG | - | chr6_2:42443459-42443478 | Msa0917600:CDS | 45.0% | |
| TGCCATGAGCAACCAAATGT+TGG | + | chr6_2:42443464-42443483 | None:intergenic | 45.0% | |
| CTAACCTTTACATATCCGGG+TGG | + | chr6_2:42443531-42443550 | None:intergenic | 45.0% | |
| CACCCGGATATGTAAAGGTT+AGG | - | chr6_2:42443529-42443548 | Msa0917600:intron | 45.0% | |
| ! | GGATTGATGTTGCTGTTGAG+AGG | - | chr6_2:42443550-42443569 | Msa0917600:intron | 45.0% |
| GAAGGAGATGTCTTGACTGT+TGG | - | chr6_2:42443600-42443619 | Msa0917600:CDS | 45.0% | |
| CAATAGGGACATTTGTGGCA+TGG | - | chr6_2:42443628-42443647 | Msa0917600:CDS | 45.0% | |
| ! | ACTGATTCAGCACTACGTTG+GGG | + | chr6_2:42443822-42443841 | None:intergenic | 45.0% |
| ! | CAACTGATTCAGCACTACGT+TGG | + | chr6_2:42443824-42443843 | None:intergenic | 45.0% |
| GAAAACTGTGAAGCCAGCTA+TGG | - | chr6_2:42443863-42443882 | Msa0917600:intron | 45.0% | |
| TCAAGGAATGGTACCATAGC+TGG | + | chr6_2:42443879-42443898 | None:intergenic | 45.0% | |
| !! | CTATTAAACAGAGAGGTGCC+TGG | + | chr6_2:42444060-42444079 | None:intergenic | 45.0% |
| ATCCTCGTGAGATAGATGTG+GGG | + | chr6_2:42444278-42444297 | None:intergenic | 45.0% | |
| TATATGGATTCATTGCCGGG+GGG | - | chr6_2:42444527-42444546 | Msa0917600:intron | 45.0% | |
| AAGGGAACGGCAAATACACA+TGG | + | chr6_2:42444681-42444700 | None:intergenic | 45.0% | |
| !! | TTGACTTGGGATGAAGGGAA+CGG | + | chr6_2:42444694-42444713 | None:intergenic | 45.0% |
| AGATAAGCTAGTTGAGGTCG+AGG | - | chr6_2:42445080-42445099 | Msa0917600:intron | 45.0% | |
| ! | CTGCCAGCTTTGATAAAGCT+GGG | - | chr6_2:42445313-42445332 | Msa0917600:intron | 45.0% |
| ! | AAGCCCAGCTTTATCAAAGC+TGG | + | chr6_2:42445319-42445338 | None:intergenic | 45.0% |
| !! | AAAAAAAAAAAAAAAAAACT+AGG | + | chr6_2:42442221-42442240 | None:intergenic | 5.0% |
| CAATGCTCCGGTTCTATGTG+GGG | + | chr6_2:42442021-42442040 | None:intergenic | 50.0% | |
| CCAATGCTCCGGTTCTATGT+GGG | + | chr6_2:42442022-42442041 | None:intergenic | 50.0% | |
| ! | CCACATAGAACCGGAGCATT+GGG | - | chr6_2:42442020-42442039 | Msa0917600:intron | 50.0% |
| !! | ACAAAGGCATCCCAATGCTC+CGG | + | chr6_2:42442033-42442052 | None:intergenic | 50.0% |
| TGATACCACGTGCATCTGTG+TGG | - | chr6_2:42442665-42442684 | Msa0917600:CDS | 50.0% | |
| GATTGCTGCCCATGTTGGTA+AGG | - | chr6_2:42442687-42442706 | Msa0917600:CDS | 50.0% | |
| TTAGAGAGGCAGACTCGTGA+TGG | - | chr6_2:42443112-42443131 | Msa0917600:CDS | 50.0% | |
| GAATGGCGTCAAGTGCAAGA+GGG | + | chr6_2:42443306-42443325 | None:intergenic | 50.0% | |
| TTTGATCAAGCCTCGTGGGT+TGG | - | chr6_2:42444231-42444250 | Msa0917600:CDS | 50.0% | |
| ATCCCCACATCTATCTCACG+AGG | - | chr6_2:42444273-42444292 | Msa0917600:intron | 50.0% | |
| TCAATCTTAGGATGTCCCCC+CGG | + | chr6_2:42444545-42444564 | None:intergenic | 50.0% | |
| TAAGCTAGTTGAGGTCGAGG+AGG | - | chr6_2:42445083-42445102 | Msa0917600:intron | 50.0% | |
| TAGTTGAGGTCGAGGAGGAT+TGG | - | chr6_2:42445088-42445107 | Msa0917600:intron | 50.0% | |
| AGTTGAGGTCGAGGAGGATT+GGG | - | chr6_2:42445089-42445108 | Msa0917600:intron | 50.0% | |
| GGAGGATTGGGCAACCTTTA+TGG | - | chr6_2:42445101-42445120 | Msa0917600:intron | 50.0% | |
| ! | GCTGCCAGCTTTGATAAAGC+TGG | - | chr6_2:42445312-42445331 | Msa0917600:intron | 50.0% |
| CCCACATAGAACCGGAGCAT+TGG | - | chr6_2:42442019-42442038 | Msa0917600:intron | 55.0% | |
| CCCAATGCTCCGGTTCTATG+TGG | + | chr6_2:42442023-42442042 | None:intergenic | 55.0% | |
| GCAATCCACACAGATGCACG+TGG | + | chr6_2:42442673-42442692 | None:intergenic | 55.0% | |
| ! | GTGTGGATTGCTGCCCATGT+TGG | - | chr6_2:42442682-42442701 | Msa0917600:CDS | 55.0% |
| ! | GCTGCCCATGTTGGTAAGGA+TGG | - | chr6_2:42442691-42442710 | Msa0917600:intron | 55.0% |
| TCTGGCCGTGTTAGGGGTTA+TGG | - | chr6_2:42442977-42442996 | Msa0917600:CDS | 55.0% | |
| TCGACGGGGATAGATTGTCG+TGG | + | chr6_2:42443031-42443050 | None:intergenic | 55.0% | |
| GGAATGGCGTCAAGTGCAAG+AGG | + | chr6_2:42443307-42443326 | None:intergenic | 55.0% | |
| TGCACTTGACGCCATTCCGA+AGG | - | chr6_2:42443309-42443328 | Msa0917600:CDS | 55.0% | |
| TGGATGCATCGTTCGTCGGC+TGG | - | chr6_2:42441687-42441706 | Msa0917600:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 42441439 | 42445485 | 42441439 | ID=Msa0917600;Name=Msa0917600 |
| chr6_2 | mRNA | 42441439 | 42445485 | 42441439 | ID=Msa0917600-mRNA-1;Parent=Msa0917600;Name=Msa0917600-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|0.8|0.44|0.5|10|0|527 |
| chr6_2 | exon | 42445375 | 42445485 | 42445375 | ID=Msa0917600-mRNA-1:exon:6822;Parent=Msa0917600-mRNA-1 |
| chr6_2 | exon | 42445141 | 42445299 | 42445141 | ID=Msa0917600-mRNA-1:exon:6821;Parent=Msa0917600-mRNA-1 |
| chr6_2 | exon | 42444844 | 42445053 | 42444844 | ID=Msa0917600-mRNA-1:exon:6820;Parent=Msa0917600-mRNA-1 |
| chr6_2 | exon | 42444168 | 42444281 | 42444168 | ID=Msa0917600-mRNA-1:exon:6819;Parent=Msa0917600-mRNA-1 |
| chr6_2 | exon | 42443594 | 42443800 | 42443594 | ID=Msa0917600-mRNA-1:exon:6818;Parent=Msa0917600-mRNA-1 |
| chr6_2 | exon | 42443385 | 42443501 | 42443385 | ID=Msa0917600-mRNA-1:exon:6817;Parent=Msa0917600-mRNA-1 |
| chr6_2 | exon | 42443235 | 42443378 | 42443235 | ID=Msa0917600-mRNA-1:exon:6816;Parent=Msa0917600-mRNA-1 |
| chr6_2 | exon | 42442897 | 42443138 | 42442897 | ID=Msa0917600-mRNA-1:exon:6815;Parent=Msa0917600-mRNA-1 |
| chr6_2 | exon | 42442547 | 42442708 | 42442547 | ID=Msa0917600-mRNA-1:exon:6814;Parent=Msa0917600-mRNA-1 |
| chr6_2 | exon | 42441439 | 42441556 | 42441439 | ID=Msa0917600-mRNA-1:exon:6813;Parent=Msa0917600-mRNA-1 |
| chr6_2 | CDS | 42445375 | 42445485 | 42445375 | ID=Msa0917600-mRNA-1:cds;Parent=Msa0917600-mRNA-1 |
| chr6_2 | CDS | 42445141 | 42445299 | 42445141 | ID=Msa0917600-mRNA-1:cds;Parent=Msa0917600-mRNA-1 |
| chr6_2 | CDS | 42444844 | 42445053 | 42444844 | ID=Msa0917600-mRNA-1:cds;Parent=Msa0917600-mRNA-1 |
| chr6_2 | CDS | 42444168 | 42444281 | 42444168 | ID=Msa0917600-mRNA-1:cds;Parent=Msa0917600-mRNA-1 |
| chr6_2 | CDS | 42443594 | 42443800 | 42443594 | ID=Msa0917600-mRNA-1:cds;Parent=Msa0917600-mRNA-1 |
| chr6_2 | CDS | 42443385 | 42443501 | 42443385 | ID=Msa0917600-mRNA-1:cds;Parent=Msa0917600-mRNA-1 |
| chr6_2 | CDS | 42443235 | 42443378 | 42443235 | ID=Msa0917600-mRNA-1:cds;Parent=Msa0917600-mRNA-1 |
| chr6_2 | CDS | 42442897 | 42443138 | 42442897 | ID=Msa0917600-mRNA-1:cds;Parent=Msa0917600-mRNA-1 |
| chr6_2 | CDS | 42442547 | 42442708 | 42442547 | ID=Msa0917600-mRNA-1:cds;Parent=Msa0917600-mRNA-1 |
| chr6_2 | CDS | 42441439 | 42441556 | 42441439 | ID=Msa0917600-mRNA-1:cds;Parent=Msa0917600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
