Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1021760 | AES60129.2 | 84.141 | 227 | 33 | 2 | 10 | 236 | 26 | 249 | 1.60e-125 | 368 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1021760 | G7I2F3 | 84.141 | 227 | 33 | 2 | 10 | 236 | 26 | 249 | 7.65e-126 | 368 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0103020 | Msa1021760 | 0.902799 | 6.695439e-79 | -8.615850e-47 |
| Msa0674790 | Msa1021760 | 0.983581 | 3.907121e-158 | -8.615850e-47 |
| Msa0435230 | Msa1021760 | 0.819904 | 9.090649e-53 | -8.615850e-47 |
| Msa0479340 | Msa1021760 | 0.825005 | 5.934461e-54 | -8.615850e-47 |
| Msa0988700 | Msa1021760 | 0.868988 | 4.336044e-66 | -8.615850e-47 |
| Msa0284840 | Msa1021760 | 0.870954 | 9.870536e-67 | -8.615850e-47 |
| Msa0284850 | Msa1021760 | 0.831612 | 1.512258e-55 | -8.615850e-47 |
| Msa0855300 | Msa1021760 | 0.941258 | 5.688932e-101 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1021760 | MtrunA17_Chr2g0307151 | 37.288 | 236 | 102 | 2 | 5 | 237 | 168 | 360 | 4.57e-45 | 156 |
| Msa1021760 | MtrunA17_Chr5g0420271 | 47.183 | 142 | 72 | 1 | 5 | 143 | 266 | 407 | 9.28e-32 | 122 |
| Msa1021760 | MtrunA17_Chr6g0466851 | 32.014 | 278 | 125 | 5 | 38 | 256 | 344 | 616 | 4.79e-31 | 122 |
| Msa1021760 | MtrunA17_Chr2g0305931 | 50.505 | 99 | 49 | 0 | 38 | 136 | 139 | 237 | 3.38e-25 | 100 |
| Msa1021760 | MtrunA17_Chr7g0227751 | 30.159 | 252 | 112 | 4 | 64 | 256 | 2 | 248 | 4.98e-24 | 100 |
| Msa1021760 | MtrunA17_Chr8g0343271 | 28.390 | 236 | 115 | 5 | 75 | 256 | 2 | 237 | 2.89e-23 | 97.4 |
| Msa1021760 | MtrunA17_Chr5g0420281 | 52.542 | 59 | 27 | 1 | 231 | 288 | 2 | 60 | 2.58e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 65 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAACATTGTTCATGTAAAT+TGG | 0.140695 | 7_1:-46730101 | None:intergenic |
| TACATGAACAATGTTATATT+TGG | 0.171721 | 7_1:+46730107 | Msa1021760:CDS |
| GCAATTGAATCTTGTTAAAT+TGG | 0.231432 | 7_1:+46729812 | Msa1021760:CDS |
| AAGAGCTTGTGCAACATAAT+TGG | 0.275099 | 7_1:+46730168 | Msa1021760:CDS |
| TGACTTTCTCCGACAAGTTT+TGG | 0.308285 | 7_1:-46729358 | None:intergenic |
| TCTTAAACTTGTGTGTCAAT+AGG | 0.329336 | 7_1:-46730486 | None:intergenic |
| AACTGATTCAGCACTACGTT+GGG | 0.333670 | 7_1:-46729982 | None:intergenic |
| TCTATCCTTTGAATCAAATC+TGG | 0.335548 | 7_1:-46729418 | None:intergenic |
| AAGAGGGCTGCAAGAATCTT+TGG | 0.375507 | 7_1:-46729449 | None:intergenic |
| TCTCCTTCTTCAACAGGTAT+AGG | 0.386213 | 7_1:-46729747 | None:intergenic |
| AATCCTAACCTTTACATATC+CGG | 0.395875 | 7_1:-46729694 | None:intergenic |
| TAACATTGTTCATGTAAATT+GGG | 0.396503 | 7_1:-46730100 | None:intergenic |
| ATCATCCCCATGCCGACATT+TGG | 0.400493 | 7_1:+46729611 | Msa1021760:CDS |
| TTGACTGTTGGTGAAGCAAT+AGG | 0.427110 | 7_1:+46729774 | Msa1021760:CDS |
| AAGACATCTCCTTCTTCAAC+AGG | 0.451832 | 7_1:-46729753 | None:intergenic |
| CACCCGGATATGTAAAGGTT+AGG | 0.464177 | 7_1:+46729691 | Msa1021760:CDS |
| TCAAGGAATGGTACCATAGC+AGG | 0.470566 | 7_1:-46730038 | None:intergenic |
| TTGTCTTCACATAAGTATCA+AGG | 0.481642 | 7_1:-46730055 | None:intergenic |
| ATTGGTCGATGAACATCAAA+AGG | 0.484853 | 7_1:+46729830 | Msa1021760:CDS |
| ATCCTAACCTTTACATATCC+GGG | 0.487205 | 7_1:-46729693 | None:intergenic |
| TTGCCTATACCTGTTGAAGA+AGG | 0.500655 | 7_1:+46729744 | Msa1021760:CDS |
| TACTTATGTGAAGACAATAA+TGG | 0.501635 | 7_1:+46730061 | Msa1021760:CDS |
| AACAACCAGATTTGATTCAA+AGG | 0.523615 | 7_1:+46729413 | Msa1021760:CDS |
| TGCCGACATTTGGTTGCTCA+TGG | 0.524359 | 7_1:+46729621 | Msa1021760:CDS |
| GAGCAACCAAATGTCGGCAT+GGG | 0.527172 | 7_1:-46729617 | None:intergenic |
| TGACTGTTGGTGAAGCAATA+GGG | 0.528262 | 7_1:+46729775 | Msa1021760:CDS |
| TGAAGCAATAGGGACATTTG+TGG | 0.543469 | 7_1:+46729785 | Msa1021760:CDS |
| GAAAACATTTACCTTCGGAA+TGG | 0.559486 | 7_1:-46729482 | None:intergenic |
| TGCACTTGACGCCATTCCGA+AGG | 0.560181 | 7_1:+46729471 | Msa1021760:CDS |
| ATTACCACCCGGATATGTAA+AGG | 0.560408 | 7_1:+46729686 | Msa1021760:CDS |
| TTTGATCAAGCCTCGTGGGT+TGG | 0.562858 | 7_1:+46730393 | Msa1021760:CDS |
| AGTCAACTTGAACAGAATGA+TGG | 0.564479 | 7_1:+46729376 | Msa1021760:CDS |
| CTGTTGTAGCTGTATATGCC+AGG | 0.564555 | 7_1:+46730201 | Msa1021760:CDS |
| TATCCTCGTGAGATAGATGT+GGG | 0.573842 | 7_1:-46730438 | None:intergenic |
| GTGAAGACAATAATGGTCAA+AGG | 0.578657 | 7_1:+46730068 | Msa1021760:CDS |
| TGAGCAACCAAATGTCGGCA+TGG | 0.581831 | 7_1:-46729618 | None:intergenic |
| CAACTGATTCAGCACTACGT+TGG | 0.583155 | 7_1:-46729983 | None:intergenic |
| CTATCTCACGAGGATAAACA+AGG | 0.584696 | 7_1:+46730445 | Msa1021760:CDS |
| AAAATTTGATCAAGCCTCGT+GGG | 0.588114 | 7_1:+46730389 | Msa1021760:CDS |
| GAAAATTTGATCAAGCCTCG+TGG | 0.594365 | 7_1:+46730388 | Msa1021760:CDS |
| TTCACATAAGTATCAAGGAA+TGG | 0.596460 | 7_1:-46730050 | None:intergenic |
| CAATAGGGACATTTGTGGCA+TGG | 0.597695 | 7_1:+46729790 | Msa1021760:CDS |
| GAAAACTGTGAAGCCTGCTA+TGG | 0.600236 | 7_1:+46730025 | Msa1021760:CDS |
| AAAACTCACCCTAAATTGAC+CGG | 0.600406 | 7_1:-46730526 | None:intergenic |
| AACAGAATGATGGTGGAGAG+AGG | 0.602687 | 7_1:+46729386 | Msa1021760:CDS |
| TGCCATGAGCAACCAAATGT+CGG | 0.603911 | 7_1:-46729623 | None:intergenic |
| CAACTTGAACAGAATGATGG+TGG | 0.604122 | 7_1:+46729379 | Msa1021760:CDS |
| GGCATATACAGCTACAACAG+TGG | 0.608828 | 7_1:-46730198 | None:intergenic |
| GGATTGATGTTGCTGTTGAG+AGG | 0.609831 | 7_1:+46729712 | Msa1021760:CDS |
| GAAGGAGATGTCTTGACTGT+TGG | 0.612130 | 7_1:+46729762 | Msa1021760:CDS |
| AGGCAACAACCAAAACTTGT+CGG | 0.621046 | 7_1:+46729349 | Msa1021760:CDS |
| GGAATGGCGTCAAGTGCAAG+AGG | 0.621123 | 7_1:-46729466 | None:intergenic |
| GATTGATGTTGCTGTTGAGA+GGG | 0.626189 | 7_1:+46729713 | Msa1021760:CDS |
| CACAACAAGAAATTACCACC+CGG | 0.626978 | 7_1:+46729675 | Msa1021760:CDS |
| TCATGGCAAATTATATAACA+CGG | 0.629389 | 7_1:+46729638 | Msa1021760:CDS |
| AGCAACCAAATGTCGGCATG+GGG | 0.630470 | 7_1:-46729616 | None:intergenic |
| CATGGCAAATTATATAACAC+GGG | 0.632665 | 7_1:+46729639 | Msa1021760:CDS |
| TTATCCTCGTGAGATAGATG+TGG | 0.636482 | 7_1:-46730439 | None:intergenic |
| ACTGATTCAGCACTACGTTG+GGG | 0.663689 | 7_1:-46729981 | None:intergenic |
| AACTTATTTACCAACCCACG+AGG | 0.672003 | 7_1:-46730403 | None:intergenic |
| ATCCCCACATCTATCTCACG+AGG | 0.676403 | 7_1:+46730435 | Msa1021760:CDS |
| GAATGGCGTCAAGTGCAAGA+GGG | 0.680502 | 7_1:-46729465 | None:intergenic |
| TATCTCACGAGGATAAACAA+GGG | 0.704904 | 7_1:+46730446 | Msa1021760:CDS |
| CTAACCTTTACATATCCGGG+TGG | 0.731735 | 7_1:-46729690 | None:intergenic |
| ATCCTCGTGAGATAGATGTG+GGG | 0.745850 | 7_1:-46730437 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATACTTGTTTTATTGTT+TGG | + | chr7_1:46729895-46729914 | Msa1021760:intron | 15.0% |
| !!! | TATATACTTGTTTTATTGTT+TGG | + | chr7_1:46729895-46729914 | Msa1021760:intron | 15.0% |
| !! | TTAAAGAAAACATTTACCTT+CGG | - | chr7_1:46729490-46729509 | None:intergenic | 20.0% |
| !! | CTAATTAGTTACAATACTTT+AGG | - | chr7_1:46729928-46729947 | None:intergenic | 20.0% |
| !!! | TCAATTTTTTTAGATTTAGC+TGG | - | chr7_1:46729954-46729973 | None:intergenic | 20.0% |
| !! | TAACATTGTTCATGTAAATT+GGG | - | chr7_1:46730103-46730122 | None:intergenic | 20.0% |
| !! | ATAACATTGTTCATGTAAAT+TGG | - | chr7_1:46730104-46730123 | None:intergenic | 20.0% |
| !! | TACATGAACAATGTTATATT+TGG | + | chr7_1:46730107-46730126 | Msa1021760:CDS | 20.0% |
| !!! | CTGTTTAATAGTTGTTATTT+AGG | + | chr7_1:46730231-46730250 | Msa1021760:intron | 20.0% |
| !! | TTAAAGAAAACATTTACCTT+CGG | - | chr7_1:46729490-46729509 | None:intergenic | 20.0% |
| !! | CTAATTAGTTACAATACTTT+AGG | - | chr7_1:46729928-46729947 | None:intergenic | 20.0% |
| !!! | TCAATTTTTTTAGATTTAGC+TGG | - | chr7_1:46729954-46729973 | None:intergenic | 20.0% |
| !! | TAACATTGTTCATGTAAATT+GGG | - | chr7_1:46730103-46730122 | None:intergenic | 20.0% |
| !! | ATAACATTGTTCATGTAAAT+TGG | - | chr7_1:46730104-46730123 | None:intergenic | 20.0% |
| !! | TACATGAACAATGTTATATT+TGG | + | chr7_1:46730107-46730126 | Msa1021760:CDS | 20.0% |
| !!! | CTGTTTAATAGTTGTTATTT+AGG | + | chr7_1:46730231-46730250 | Msa1021760:intron | 20.0% |
| ! | GAATGAACATATACGTAATT+AGG | - | chr7_1:46729552-46729571 | None:intergenic | 25.0% |
| ! | TCATGGCAAATTATATAACA+CGG | + | chr7_1:46729638-46729657 | Msa1021760:CDS | 25.0% |
| ! | GCAATTGAATCTTGTTAAAT+TGG | + | chr7_1:46729812-46729831 | Msa1021760:CDS | 25.0% |
| ! | ATATCACTTATCAATCAGAA+AGG | - | chr7_1:46729878-46729897 | None:intergenic | 25.0% |
| ! | TACTTATGTGAAGACAATAA+TGG | + | chr7_1:46730061-46730080 | Msa1021760:CDS | 25.0% |
| ! | ATAACAACTATTAAACAGAG+AGG | - | chr7_1:46730229-46730248 | None:intergenic | 25.0% |
| ! | GAATGAACATATACGTAATT+AGG | - | chr7_1:46729552-46729571 | None:intergenic | 25.0% |
| ! | TCATGGCAAATTATATAACA+CGG | + | chr7_1:46729638-46729657 | Msa1021760:CDS | 25.0% |
| ! | GCAATTGAATCTTGTTAAAT+TGG | + | chr7_1:46729812-46729831 | Msa1021760:CDS | 25.0% |
| ! | ATATCACTTATCAATCAGAA+AGG | - | chr7_1:46729878-46729897 | None:intergenic | 25.0% |
| ! | TACTTATGTGAAGACAATAA+TGG | + | chr7_1:46730061-46730080 | Msa1021760:CDS | 25.0% |
| ! | ATAACAACTATTAAACAGAG+AGG | - | chr7_1:46730229-46730248 | None:intergenic | 25.0% |
| AACAACCAGATTTGATTCAA+AGG | + | chr7_1:46729413-46729432 | Msa1021760:CDS | 30.0% | |
| TCTATCCTTTGAATCAAATC+TGG | - | chr7_1:46729421-46729440 | None:intergenic | 30.0% | |
| CGTATATGTTCATTCACTAT+TGG | + | chr7_1:46729557-46729576 | Msa1021760:intron | 30.0% | |
| !! | TGTTCATTCACTATTGGTTT+AGG | + | chr7_1:46729563-46729582 | Msa1021760:intron | 30.0% |
| !! | GTTCATTCACTATTGGTTTA+GGG | + | chr7_1:46729564-46729583 | Msa1021760:intron | 30.0% |
| CATGGCAAATTATATAACAC+GGG | + | chr7_1:46729639-46729658 | Msa1021760:CDS | 30.0% | |
| AATCCTAACCTTTACATATC+CGG | - | chr7_1:46729697-46729716 | None:intergenic | 30.0% | |
| ! | ACAGTTTTCATCTTTTTGCT+TGG | - | chr7_1:46730014-46730033 | None:intergenic | 30.0% |
| TTCACATAAGTATCAAGGAA+TGG | - | chr7_1:46730053-46730072 | None:intergenic | 30.0% | |
| TTGTCTTCACATAAGTATCA+AGG | - | chr7_1:46730058-46730077 | None:intergenic | 30.0% | |
| !! | TTGTTATTTAGGACTGTTAG+AGG | + | chr7_1:46730242-46730261 | Msa1021760:intron | 30.0% |
| ! | TGTTATTTAGGACTGTTAGA+GGG | + | chr7_1:46730243-46730262 | Msa1021760:intron | 30.0% |
| ! | TGTTCTGCTATTCCTATTTT+TGG | + | chr7_1:46730300-46730319 | Msa1021760:intron | 30.0% |
| !! | GTTCTGCTATTCCTATTTTT+GGG | + | chr7_1:46730301-46730320 | Msa1021760:intron | 30.0% |
| !! | GTGTTGTTTGTTCTATTTCA+AGG | + | chr7_1:46730356-46730375 | Msa1021760:intron | 30.0% |
| TCTTAAACTTGTGTGTCAAT+AGG | - | chr7_1:46730489-46730508 | None:intergenic | 30.0% | |
| AACAACCAGATTTGATTCAA+AGG | + | chr7_1:46729413-46729432 | Msa1021760:CDS | 30.0% | |
| TCTATCCTTTGAATCAAATC+TGG | - | chr7_1:46729421-46729440 | None:intergenic | 30.0% | |
| CGTATATGTTCATTCACTAT+TGG | + | chr7_1:46729557-46729576 | Msa1021760:intron | 30.0% | |
| !! | TGTTCATTCACTATTGGTTT+AGG | + | chr7_1:46729563-46729582 | Msa1021760:intron | 30.0% |
| !! | GTTCATTCACTATTGGTTTA+GGG | + | chr7_1:46729564-46729583 | Msa1021760:intron | 30.0% |
| CATGGCAAATTATATAACAC+GGG | + | chr7_1:46729639-46729658 | Msa1021760:CDS | 30.0% | |
| AATCCTAACCTTTACATATC+CGG | - | chr7_1:46729697-46729716 | None:intergenic | 30.0% | |
| ! | ACAGTTTTCATCTTTTTGCT+TGG | - | chr7_1:46730014-46730033 | None:intergenic | 30.0% |
| TTCACATAAGTATCAAGGAA+TGG | - | chr7_1:46730053-46730072 | None:intergenic | 30.0% | |
| TTGTCTTCACATAAGTATCA+AGG | - | chr7_1:46730058-46730077 | None:intergenic | 30.0% | |
| !! | TTGTTATTTAGGACTGTTAG+AGG | + | chr7_1:46730242-46730261 | Msa1021760:intron | 30.0% |
| ! | TGTTATTTAGGACTGTTAGA+GGG | + | chr7_1:46730243-46730262 | Msa1021760:intron | 30.0% |
| ! | TGTTCTGCTATTCCTATTTT+TGG | + | chr7_1:46730300-46730319 | Msa1021760:intron | 30.0% |
| !! | GTTCTGCTATTCCTATTTTT+GGG | + | chr7_1:46730301-46730320 | Msa1021760:intron | 30.0% |
| !! | GTGTTGTTTGTTCTATTTCA+AGG | + | chr7_1:46730356-46730375 | Msa1021760:intron | 30.0% |
| TCTTAAACTTGTGTGTCAAT+AGG | - | chr7_1:46730489-46730508 | None:intergenic | 30.0% | |
| AGTCAACTTGAACAGAATGA+TGG | + | chr7_1:46729376-46729395 | Msa1021760:CDS | 35.0% | |
| GAAAACATTTACCTTCGGAA+TGG | - | chr7_1:46729485-46729504 | None:intergenic | 35.0% | |
| ATCCTAACCTTTACATATCC+GGG | - | chr7_1:46729696-46729715 | None:intergenic | 35.0% | |
| ATTGGTCGATGAACATCAAA+AGG | + | chr7_1:46729830-46729849 | Msa1021760:CDS | 35.0% | |
| GTGAAGACAATAATGGTCAA+AGG | + | chr7_1:46730068-46730087 | Msa1021760:CDS | 35.0% | |
| AAGAGCTTGTGCAACATAAT+TGG | + | chr7_1:46730168-46730187 | Msa1021760:CDS | 35.0% | |
| AACAACACACTCCCAAAAAT+AGG | - | chr7_1:46730315-46730334 | None:intergenic | 35.0% | |
| !!! | TATTTTTGGGAGTGTGTTGT+TGG | + | chr7_1:46730314-46730333 | Msa1021760:intron | 35.0% |
| AAAATTTGATCAAGCCTCGT+GGG | + | chr7_1:46730389-46730408 | Msa1021760:CDS | 35.0% | |
| TATCTCACGAGGATAAACAA+GGG | + | chr7_1:46730446-46730465 | Msa1021760:CDS | 35.0% | |
| !! | GAATAAGCTGATTTTTGCAC+CGG | + | chr7_1:46730507-46730526 | Msa1021760:CDS | 35.0% |
| !! | ATTTTTGCACCGGTCAATTT+AGG | + | chr7_1:46730517-46730536 | Msa1021760:CDS | 35.0% |
| !! | TTTTTGCACCGGTCAATTTA+GGG | + | chr7_1:46730518-46730537 | Msa1021760:CDS | 35.0% |
| AGTCAACTTGAACAGAATGA+TGG | + | chr7_1:46729376-46729395 | Msa1021760:CDS | 35.0% | |
| GAAAACATTTACCTTCGGAA+TGG | - | chr7_1:46729485-46729504 | None:intergenic | 35.0% | |
| ATCCTAACCTTTACATATCC+GGG | - | chr7_1:46729696-46729715 | None:intergenic | 35.0% | |
| ATTGGTCGATGAACATCAAA+AGG | + | chr7_1:46729830-46729849 | Msa1021760:CDS | 35.0% | |
| GTGAAGACAATAATGGTCAA+AGG | + | chr7_1:46730068-46730087 | Msa1021760:CDS | 35.0% | |
| AAGAGCTTGTGCAACATAAT+TGG | + | chr7_1:46730168-46730187 | Msa1021760:CDS | 35.0% | |
| AACAACACACTCCCAAAAAT+AGG | - | chr7_1:46730315-46730334 | None:intergenic | 35.0% | |
| !!! | TATTTTTGGGAGTGTGTTGT+TGG | + | chr7_1:46730314-46730333 | Msa1021760:intron | 35.0% |
| AAAATTTGATCAAGCCTCGT+GGG | + | chr7_1:46730389-46730408 | Msa1021760:CDS | 35.0% | |
| TATCTCACGAGGATAAACAA+GGG | + | chr7_1:46730446-46730465 | Msa1021760:CDS | 35.0% | |
| !! | GAATAAGCTGATTTTTGCAC+CGG | + | chr7_1:46730507-46730526 | Msa1021760:CDS | 35.0% |
| !! | ATTTTTGCACCGGTCAATTT+AGG | + | chr7_1:46730517-46730536 | Msa1021760:CDS | 35.0% |
| !! | TTTTTGCACCGGTCAATTTA+GGG | + | chr7_1:46730518-46730537 | Msa1021760:CDS | 35.0% |
| AGGCAACAACCAAAACTTGT+CGG | + | chr7_1:46729349-46729368 | Msa1021760:CDS | 40.0% | |
| ! | TGACTTTCTCCGACAAGTTT+TGG | - | chr7_1:46729361-46729380 | None:intergenic | 40.0% |
| CAACTTGAACAGAATGATGG+TGG | + | chr7_1:46729379-46729398 | Msa1021760:CDS | 40.0% | |
| CACAACAAGAAATTACCACC+CGG | + | chr7_1:46729675-46729694 | Msa1021760:CDS | 40.0% | |
| ATTACCACCCGGATATGTAA+AGG | + | chr7_1:46729686-46729705 | Msa1021760:CDS | 40.0% | |
| ! | GATTGATGTTGCTGTTGAGA+GGG | + | chr7_1:46729713-46729732 | Msa1021760:CDS | 40.0% |
| TTGCCTATACCTGTTGAAGA+AGG | + | chr7_1:46729744-46729763 | Msa1021760:CDS | 40.0% | |
| TCTCCTTCTTCAACAGGTAT+AGG | - | chr7_1:46729750-46729769 | None:intergenic | 40.0% | |
| AAGACATCTCCTTCTTCAAC+AGG | - | chr7_1:46729756-46729775 | None:intergenic | 40.0% | |
| ! | TTGACTGTTGGTGAAGCAAT+AGG | + | chr7_1:46729774-46729793 | Msa1021760:CDS | 40.0% |
| ! | TGACTGTTGGTGAAGCAATA+GGG | + | chr7_1:46729775-46729794 | Msa1021760:CDS | 40.0% |
| TGAAGCAATAGGGACATTTG+TGG | + | chr7_1:46729785-46729804 | Msa1021760:CDS | 40.0% | |
| ! | AACTGATTCAGCACTACGTT+GGG | - | chr7_1:46729985-46730004 | None:intergenic | 40.0% |
| !! | CTATTAAACAGAGAGGTACC+TGG | - | chr7_1:46730222-46730241 | None:intergenic | 40.0% |
| GAAAATTTGATCAAGCCTCG+TGG | + | chr7_1:46730388-46730407 | Msa1021760:CDS | 40.0% | |
| AACTTATTTACCAACCCACG+AGG | - | chr7_1:46730406-46730425 | None:intergenic | 40.0% | |
| TATCCTCGTGAGATAGATGT+GGG | - | chr7_1:46730441-46730460 | None:intergenic | 40.0% | |
| TTATCCTCGTGAGATAGATG+TGG | - | chr7_1:46730442-46730461 | None:intergenic | 40.0% | |
| CTATCTCACGAGGATAAACA+AGG | + | chr7_1:46730445-46730464 | Msa1021760:CDS | 40.0% | |
| AGGCAACAACCAAAACTTGT+CGG | + | chr7_1:46729349-46729368 | Msa1021760:CDS | 40.0% | |
| ! | TGACTTTCTCCGACAAGTTT+TGG | - | chr7_1:46729361-46729380 | None:intergenic | 40.0% |
| CAACTTGAACAGAATGATGG+TGG | + | chr7_1:46729379-46729398 | Msa1021760:CDS | 40.0% | |
| CACAACAAGAAATTACCACC+CGG | + | chr7_1:46729675-46729694 | Msa1021760:CDS | 40.0% | |
| ATTACCACCCGGATATGTAA+AGG | + | chr7_1:46729686-46729705 | Msa1021760:CDS | 40.0% | |
| ! | GATTGATGTTGCTGTTGAGA+GGG | + | chr7_1:46729713-46729732 | Msa1021760:CDS | 40.0% |
| TTGCCTATACCTGTTGAAGA+AGG | + | chr7_1:46729744-46729763 | Msa1021760:CDS | 40.0% | |
| TCTCCTTCTTCAACAGGTAT+AGG | - | chr7_1:46729750-46729769 | None:intergenic | 40.0% | |
| AAGACATCTCCTTCTTCAAC+AGG | - | chr7_1:46729756-46729775 | None:intergenic | 40.0% | |
| ! | TTGACTGTTGGTGAAGCAAT+AGG | + | chr7_1:46729774-46729793 | Msa1021760:CDS | 40.0% |
| ! | TGACTGTTGGTGAAGCAATA+GGG | + | chr7_1:46729775-46729794 | Msa1021760:CDS | 40.0% |
| TGAAGCAATAGGGACATTTG+TGG | + | chr7_1:46729785-46729804 | Msa1021760:CDS | 40.0% | |
| ! | AACTGATTCAGCACTACGTT+GGG | - | chr7_1:46729985-46730004 | None:intergenic | 40.0% |
| !! | CTATTAAACAGAGAGGTACC+TGG | - | chr7_1:46730222-46730241 | None:intergenic | 40.0% |
| GAAAATTTGATCAAGCCTCG+TGG | + | chr7_1:46730388-46730407 | Msa1021760:CDS | 40.0% | |
| AACTTATTTACCAACCCACG+AGG | - | chr7_1:46730406-46730425 | None:intergenic | 40.0% | |
| TATCCTCGTGAGATAGATGT+GGG | - | chr7_1:46730441-46730460 | None:intergenic | 40.0% | |
| TTATCCTCGTGAGATAGATG+TGG | - | chr7_1:46730442-46730461 | None:intergenic | 40.0% | |
| CTATCTCACGAGGATAAACA+AGG | + | chr7_1:46730445-46730464 | Msa1021760:CDS | 40.0% | |
| !! | AACAGAATGATGGTGGAGAG+AGG | + | chr7_1:46729386-46729405 | Msa1021760:CDS | 45.0% |
| AAGAGGGCTGCAAGAATCTT+TGG | - | chr7_1:46729452-46729471 | None:intergenic | 45.0% | |
| TGCCATGAGCAACCAAATGT+CGG | - | chr7_1:46729626-46729645 | None:intergenic | 45.0% | |
| CTAACCTTTACATATCCGGG+TGG | - | chr7_1:46729693-46729712 | None:intergenic | 45.0% | |
| CACCCGGATATGTAAAGGTT+AGG | + | chr7_1:46729691-46729710 | Msa1021760:CDS | 45.0% | |
| ! | GGATTGATGTTGCTGTTGAG+AGG | + | chr7_1:46729712-46729731 | Msa1021760:CDS | 45.0% |
| GAAGGAGATGTCTTGACTGT+TGG | + | chr7_1:46729762-46729781 | Msa1021760:CDS | 45.0% | |
| CAATAGGGACATTTGTGGCA+TGG | + | chr7_1:46729790-46729809 | Msa1021760:CDS | 45.0% | |
| ! | ACTGATTCAGCACTACGTTG+GGG | - | chr7_1:46729984-46730003 | None:intergenic | 45.0% |
| ! | CAACTGATTCAGCACTACGT+TGG | - | chr7_1:46729986-46730005 | None:intergenic | 45.0% |
| GAAAACTGTGAAGCCTGCTA+TGG | + | chr7_1:46730025-46730044 | Msa1021760:CDS | 45.0% | |
| TCAAGGAATGGTACCATAGC+AGG | - | chr7_1:46730041-46730060 | None:intergenic | 45.0% | |
| GGCATATACAGCTACAACAG+TGG | - | chr7_1:46730201-46730220 | None:intergenic | 45.0% | |
| CTGTTGTAGCTGTATATGCC+AGG | + | chr7_1:46730201-46730220 | Msa1021760:CDS | 45.0% | |
| ATCCTCGTGAGATAGATGTG+GGG | - | chr7_1:46730440-46730459 | None:intergenic | 45.0% | |
| !! | AACAGAATGATGGTGGAGAG+AGG | + | chr7_1:46729386-46729405 | Msa1021760:CDS | 45.0% |
| AAGAGGGCTGCAAGAATCTT+TGG | - | chr7_1:46729452-46729471 | None:intergenic | 45.0% | |
| TGCCATGAGCAACCAAATGT+CGG | - | chr7_1:46729626-46729645 | None:intergenic | 45.0% | |
| CTAACCTTTACATATCCGGG+TGG | - | chr7_1:46729693-46729712 | None:intergenic | 45.0% | |
| CACCCGGATATGTAAAGGTT+AGG | + | chr7_1:46729691-46729710 | Msa1021760:CDS | 45.0% | |
| ! | GGATTGATGTTGCTGTTGAG+AGG | + | chr7_1:46729712-46729731 | Msa1021760:CDS | 45.0% |
| GAAGGAGATGTCTTGACTGT+TGG | + | chr7_1:46729762-46729781 | Msa1021760:CDS | 45.0% | |
| CAATAGGGACATTTGTGGCA+TGG | + | chr7_1:46729790-46729809 | Msa1021760:CDS | 45.0% | |
| ! | ACTGATTCAGCACTACGTTG+GGG | - | chr7_1:46729984-46730003 | None:intergenic | 45.0% |
| ! | CAACTGATTCAGCACTACGT+TGG | - | chr7_1:46729986-46730005 | None:intergenic | 45.0% |
| GAAAACTGTGAAGCCTGCTA+TGG | + | chr7_1:46730025-46730044 | Msa1021760:CDS | 45.0% | |
| TCAAGGAATGGTACCATAGC+AGG | - | chr7_1:46730041-46730060 | None:intergenic | 45.0% | |
| GGCATATACAGCTACAACAG+TGG | - | chr7_1:46730201-46730220 | None:intergenic | 45.0% | |
| CTGTTGTAGCTGTATATGCC+AGG | + | chr7_1:46730201-46730220 | Msa1021760:CDS | 45.0% | |
| ATCCTCGTGAGATAGATGTG+GGG | - | chr7_1:46730440-46730459 | None:intergenic | 45.0% | |
| GAATGGCGTCAAGTGCAAGA+GGG | - | chr7_1:46729468-46729487 | None:intergenic | 50.0% | |
| ATCATCCCCATGCCGACATT+TGG | + | chr7_1:46729611-46729630 | Msa1021760:CDS | 50.0% | |
| AGCAACCAAATGTCGGCATG+GGG | - | chr7_1:46729619-46729638 | None:intergenic | 50.0% | |
| GAGCAACCAAATGTCGGCAT+GGG | - | chr7_1:46729620-46729639 | None:intergenic | 50.0% | |
| TGAGCAACCAAATGTCGGCA+TGG | - | chr7_1:46729621-46729640 | None:intergenic | 50.0% | |
| TGCCGACATTTGGTTGCTCA+TGG | + | chr7_1:46729621-46729640 | Msa1021760:CDS | 50.0% | |
| TTTGATCAAGCCTCGTGGGT+TGG | + | chr7_1:46730393-46730412 | Msa1021760:CDS | 50.0% | |
| ATCCCCACATCTATCTCACG+AGG | + | chr7_1:46730435-46730454 | Msa1021760:CDS | 50.0% | |
| GAATGGCGTCAAGTGCAAGA+GGG | - | chr7_1:46729468-46729487 | None:intergenic | 50.0% | |
| ATCATCCCCATGCCGACATT+TGG | + | chr7_1:46729611-46729630 | Msa1021760:CDS | 50.0% | |
| AGCAACCAAATGTCGGCATG+GGG | - | chr7_1:46729619-46729638 | None:intergenic | 50.0% | |
| GAGCAACCAAATGTCGGCAT+GGG | - | chr7_1:46729620-46729639 | None:intergenic | 50.0% | |
| TGAGCAACCAAATGTCGGCA+TGG | - | chr7_1:46729621-46729640 | None:intergenic | 50.0% | |
| TGCCGACATTTGGTTGCTCA+TGG | + | chr7_1:46729621-46729640 | Msa1021760:CDS | 50.0% | |
| TTTGATCAAGCCTCGTGGGT+TGG | + | chr7_1:46730393-46730412 | Msa1021760:CDS | 50.0% | |
| ATCCCCACATCTATCTCACG+AGG | + | chr7_1:46730435-46730454 | Msa1021760:CDS | 50.0% | |
| GGAATGGCGTCAAGTGCAAG+AGG | - | chr7_1:46729469-46729488 | None:intergenic | 55.0% | |
| TGCACTTGACGCCATTCCGA+AGG | + | chr7_1:46729471-46729490 | Msa1021760:CDS | 55.0% | |
| GGAATGGCGTCAAGTGCAAG+AGG | - | chr7_1:46729469-46729488 | None:intergenic | 55.0% | |
| TGCACTTGACGCCATTCCGA+AGG | + | chr7_1:46729471-46729490 | Msa1021760:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 46729334 | 46730543 | 46729334 | ID=Msa1021760;Name=Msa1021760 |
| chr7_1 | mRNA | 46729334 | 46730543 | 46729334 | ID=Msa1021760-mRNA-1;Parent=Msa1021760;Name=Msa1021760-mRNA-1;_AED=0.12;_eAED=0.13;_QI=0|0|0|1|1|1|4|0|288 |
| chr7_1 | exon | 46729334 | 46729492 | 46729334 | ID=Msa1021760-mRNA-1:exon:9199;Parent=Msa1021760-mRNA-1 |
| chr7_1 | exon | 46729585 | 46729851 | 46729585 | ID=Msa1021760-mRNA-1:exon:9200;Parent=Msa1021760-mRNA-1 |
| chr7_1 | exon | 46729948 | 46730222 | 46729948 | ID=Msa1021760-mRNA-1:exon:9201;Parent=Msa1021760-mRNA-1 |
| chr7_1 | exon | 46730378 | 46730543 | 46730378 | ID=Msa1021760-mRNA-1:exon:9202;Parent=Msa1021760-mRNA-1 |
| chr7_1 | CDS | 46729334 | 46729492 | 46729334 | ID=Msa1021760-mRNA-1:cds;Parent=Msa1021760-mRNA-1 |
| chr7_1 | CDS | 46729585 | 46729851 | 46729585 | ID=Msa1021760-mRNA-1:cds;Parent=Msa1021760-mRNA-1 |
| chr7_1 | CDS | 46729948 | 46730222 | 46729948 | ID=Msa1021760-mRNA-1:cds;Parent=Msa1021760-mRNA-1 |
| chr7_1 | CDS | 46730378 | 46730543 | 46730378 | ID=Msa1021760-mRNA-1:cds;Parent=Msa1021760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
