Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0674790 | AES60129.2 | 84.141 | 227 | 33 | 2 | 42 | 268 | 26 | 249 | 3.92e-125 | 368 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0674790 | G7I2F3 | 84.141 | 227 | 33 | 2 | 42 | 268 | 26 | 249 | 1.87e-125 | 368 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0103020 | Msa0674790 | 0.904370 | 1.318221e-79 | -8.615850e-47 |
| Msa0674790 | Msa0855300 | 0.938740 | 4.078787e-99 | -8.615850e-47 |
| Msa0674790 | Msa0917600 | 0.801369 | 9.301015e-49 | -8.615850e-47 |
| Msa0674790 | Msa0988700 | 0.862103 | 6.421891e-64 | -8.615850e-47 |
| Msa0674790 | Msa1021760 | 0.983581 | 3.907121e-158 | -8.615850e-47 |
| Msa0674790 | Msa1121490 | 0.804770 | 1.841698e-49 | -8.615850e-47 |
| Msa0435230 | Msa0674790 | 0.815628 | 8.385050e-52 | -8.615850e-47 |
| Msa0479340 | Msa0674790 | 0.822941 | 1.809527e-53 | -8.615850e-47 |
| Msa0284840 | Msa0674790 | 0.870229 | 1.708203e-66 | -8.615850e-47 |
| Msa0284850 | Msa0674790 | 0.837940 | 3.863276e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0674790 | MtrunA17_Chr2g0307151 | 35.069 | 288 | 117 | 4 | 8 | 269 | 117 | 360 | 3.80e-45 | 157 |
| Msa0674790 | MtrunA17_Chr5g0420271 | 42.781 | 187 | 95 | 3 | 1 | 175 | 221 | 407 | 2.12e-34 | 130 |
| Msa0674790 | MtrunA17_Chr6g0466851 | 32.014 | 278 | 125 | 5 | 70 | 288 | 344 | 616 | 1.28e-30 | 122 |
| Msa0674790 | MtrunA17_Chr2g0305931 | 50.505 | 99 | 49 | 0 | 70 | 168 | 139 | 237 | 4.52e-25 | 101 |
| Msa0674790 | MtrunA17_Chr7g0227751 | 30.159 | 252 | 112 | 4 | 96 | 288 | 2 | 248 | 1.75e-23 | 99.8 |
| Msa0674790 | MtrunA17_Chr8g0343271 | 28.390 | 236 | 115 | 5 | 107 | 288 | 2 | 237 | 5.44e-23 | 97.4 |
| Msa0674790 | MtrunA17_Chr5g0420281 | 52.542 | 59 | 27 | 1 | 263 | 320 | 2 | 60 | 2.12e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 70 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAACATTGTTCATGTAAAT+TGG | 0.140695 | 4_4:-22740845 | None:intergenic |
| TACATGAACAATGTTATATT+TGG | 0.171721 | 4_4:+22740851 | Msa0674790:CDS |
| GCAATTGAATCTTGTTAAAT+TGG | 0.231432 | 4_4:+22740556 | Msa0674790:CDS |
| AAGAGCTTGTGCAACATAAT+TGG | 0.275099 | 4_4:+22740912 | Msa0674790:CDS |
| TGACTTTCTCCGACAAGTTT+TGG | 0.308285 | 4_4:-22740102 | None:intergenic |
| TCTTAAACTTGTGTGTCAAT+AGG | 0.329336 | 4_4:-22741230 | None:intergenic |
| AACTGATTCAGCACTACGTT+GGG | 0.333670 | 4_4:-22740726 | None:intergenic |
| TCTATCCTTTGAATCAAATC+TGG | 0.335548 | 4_4:-22740162 | None:intergenic |
| AAGAGGGCTGCAAGAATCTT+TGG | 0.375507 | 4_4:-22740193 | None:intergenic |
| TCTCCTTCTTCAACAGGTAT+AGG | 0.386213 | 4_4:-22740491 | None:intergenic |
| AATGGAGTTACTAGAGAGAT+TGG | 0.387630 | 4_4:+22739993 | Msa0674790:CDS |
| AATCCTAACCTTTACATATC+CGG | 0.395875 | 4_4:-22740438 | None:intergenic |
| TAACATTGTTCATGTAAATT+GGG | 0.396503 | 4_4:-22740844 | None:intergenic |
| ATCATCCCCATGCCGACATT+TGG | 0.400493 | 4_4:+22740355 | Msa0674790:CDS |
| TTGACTGTTGGTGAAGCAAT+AGG | 0.427110 | 4_4:+22740518 | Msa0674790:CDS |
| AAGACATCTCCTTCTTCAAC+AGG | 0.451832 | 4_4:-22740497 | None:intergenic |
| CACCCGGATATGTAAAGGTT+AGG | 0.464177 | 4_4:+22740435 | Msa0674790:CDS |
| TCAAGGAATGGTACCATAGC+AGG | 0.470566 | 4_4:-22740782 | None:intergenic |
| GATGGAGATACTAGAGAGAA+TGG | 0.476912 | 4_4:+22740036 | Msa0674790:CDS |
| TTGTCTTCACATAAGTATCA+AGG | 0.481642 | 4_4:-22740799 | None:intergenic |
| ATTGGTCGATGAACATCAAA+AGG | 0.484853 | 4_4:+22740574 | Msa0674790:CDS |
| ATCCTAACCTTTACATATCC+GGG | 0.487205 | 4_4:-22740437 | None:intergenic |
| TTGCCTATACCTGTTGAAGA+AGG | 0.500655 | 4_4:+22740488 | Msa0674790:CDS |
| TACTTATGTGAAGACAATAA+TGG | 0.501635 | 4_4:+22740805 | Msa0674790:CDS |
| TGGCAAAATGAGTAAGAGAA+TGG | 0.512688 | 4_4:+22739975 | None:intergenic |
| AACAACCAGATTTGATTCAA+AGG | 0.523615 | 4_4:+22740157 | Msa0674790:CDS |
| TGCCGACATTTGGTTGCTCA+TGG | 0.524359 | 4_4:+22740365 | Msa0674790:CDS |
| GAGCAACCAAATGTCGGCAT+GGG | 0.527172 | 4_4:-22740361 | None:intergenic |
| TGACTGTTGGTGAAGCAATA+GGG | 0.528262 | 4_4:+22740519 | Msa0674790:CDS |
| TGAAGCAATAGGGACATTTG+TGG | 0.543469 | 4_4:+22740529 | Msa0674790:CDS |
| TAGAGAGATTGGTGTTAGAG+AGG | 0.553130 | 4_4:+22740004 | Msa0674790:CDS |
| GAAAACATTTACCTTCGGAA+TGG | 0.559486 | 4_4:-22740226 | None:intergenic |
| TGCACTTGACGCCATTCCGA+AGG | 0.560181 | 4_4:+22740215 | Msa0674790:CDS |
| ATTACCACCCGGATATGTAA+AGG | 0.560408 | 4_4:+22740430 | Msa0674790:CDS |
| TTTGATCAAGCCTCGTGGGT+TGG | 0.562858 | 4_4:+22741137 | Msa0674790:CDS |
| AGTCAACTTGAACAGAATGA+TGG | 0.564479 | 4_4:+22740120 | Msa0674790:CDS |
| CTGTTGTAGCTGTATATGCC+AGG | 0.564555 | 4_4:+22740945 | Msa0674790:CDS |
| TATCCTCGTGAGATAGATGT+GGG | 0.573842 | 4_4:-22741182 | None:intergenic |
| GTGAAGACAATAATGGTCAA+AGG | 0.578657 | 4_4:+22740812 | Msa0674790:CDS |
| TTAGAGAGGCAGACTCATGA+TGG | 0.580110 | 4_4:+22740018 | Msa0674790:CDS |
| TGAGCAACCAAATGTCGGCA+TGG | 0.581831 | 4_4:-22740362 | None:intergenic |
| CAACTGATTCAGCACTACGT+TGG | 0.583155 | 4_4:-22740727 | None:intergenic |
| CTATCTCACGAGGATAAACA+AGG | 0.584696 | 4_4:+22741189 | Msa0674790:CDS |
| AAAATTTGATCAAGCCTCGT+GGG | 0.588114 | 4_4:+22741133 | Msa0674790:CDS |
| GAAAATTTGATCAAGCCTCG+TGG | 0.594365 | 4_4:+22741132 | Msa0674790:CDS |
| TTCACATAAGTATCAAGGAA+TGG | 0.596460 | 4_4:-22740794 | None:intergenic |
| CAATAGGGACATTTGTGGCA+TGG | 0.597695 | 4_4:+22740534 | Msa0674790:CDS |
| GAAAACTGTGAAGCCTGCTA+TGG | 0.600236 | 4_4:+22740769 | Msa0674790:CDS |
| AAAACTCACCCTAAATTGAC+CGG | 0.600406 | 4_4:-22741270 | None:intergenic |
| AACAGAATGATGGTGGAGAG+AGG | 0.602687 | 4_4:+22740130 | Msa0674790:CDS |
| TGCCATGAGCAACCAAATGT+CGG | 0.603911 | 4_4:-22740367 | None:intergenic |
| CAACTTGAACAGAATGATGG+TGG | 0.604122 | 4_4:+22740123 | Msa0674790:CDS |
| GGCATATACAGCTACAACAG+TGG | 0.608828 | 4_4:-22740942 | None:intergenic |
| GGATTGATGTTGCTGTTGAG+AGG | 0.609831 | 4_4:+22740456 | Msa0674790:CDS |
| GAAGGAGATGTCTTGACTGT+TGG | 0.612130 | 4_4:+22740506 | Msa0674790:CDS |
| AGGCAACAACCAAAACTTGT+CGG | 0.621046 | 4_4:+22740093 | Msa0674790:CDS |
| GGAATGGCGTCAAGTGCAAG+AGG | 0.621123 | 4_4:-22740210 | None:intergenic |
| GATTGATGTTGCTGTTGAGA+GGG | 0.626189 | 4_4:+22740457 | Msa0674790:CDS |
| CACAACAAGAAATTACCACC+CGG | 0.626978 | 4_4:+22740419 | Msa0674790:CDS |
| TCATGGCAAATTATATAACA+CGG | 0.629389 | 4_4:+22740382 | Msa0674790:CDS |
| AGCAACCAAATGTCGGCATG+GGG | 0.630470 | 4_4:-22740360 | None:intergenic |
| CATGGCAAATTATATAACAC+GGG | 0.632665 | 4_4:+22740383 | Msa0674790:CDS |
| TTATCCTCGTGAGATAGATG+TGG | 0.636482 | 4_4:-22741183 | None:intergenic |
| ACTGATTCAGCACTACGTTG+GGG | 0.663689 | 4_4:-22740725 | None:intergenic |
| AACTTATTTACCAACCCACG+AGG | 0.672003 | 4_4:-22741147 | None:intergenic |
| ATCCCCACATCTATCTCACG+AGG | 0.676403 | 4_4:+22741179 | Msa0674790:CDS |
| GAATGGCGTCAAGTGCAAGA+GGG | 0.680502 | 4_4:-22740209 | None:intergenic |
| TATCTCACGAGGATAAACAA+GGG | 0.704904 | 4_4:+22741190 | Msa0674790:CDS |
| CTAACCTTTACATATCCGGG+TGG | 0.731735 | 4_4:-22740434 | None:intergenic |
| ATCCTCGTGAGATAGATGTG+GGG | 0.745850 | 4_4:-22741181 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATACTTGTTTTATTATT+TGG | + | chr4_4:22740639-22740658 | Msa0674790:intron | 10.0% |
| !!! | TATATACTTGTTTTATTATT+TGG | + | chr4_4:22740639-22740658 | Msa0674790:intron | 10.0% |
| !! | TTAAAGAAAACATTTACCTT+CGG | - | chr4_4:22740234-22740253 | None:intergenic | 20.0% |
| !! | CTAATTAGTTACAATACTTT+AGG | - | chr4_4:22740672-22740691 | None:intergenic | 20.0% |
| !!! | TCAATTTTTTTAGATTTAGC+TGG | - | chr4_4:22740698-22740717 | None:intergenic | 20.0% |
| !! | TAACATTGTTCATGTAAATT+GGG | - | chr4_4:22740847-22740866 | None:intergenic | 20.0% |
| !! | ATAACATTGTTCATGTAAAT+TGG | - | chr4_4:22740848-22740867 | None:intergenic | 20.0% |
| !! | TACATGAACAATGTTATATT+TGG | + | chr4_4:22740851-22740870 | Msa0674790:CDS | 20.0% |
| !!! | CTGTTTAATAGTTGTTATTT+AGG | + | chr4_4:22740975-22740994 | Msa0674790:intron | 20.0% |
| !! | TTAAAGAAAACATTTACCTT+CGG | - | chr4_4:22740234-22740253 | None:intergenic | 20.0% |
| !! | CTAATTAGTTACAATACTTT+AGG | - | chr4_4:22740672-22740691 | None:intergenic | 20.0% |
| !!! | TCAATTTTTTTAGATTTAGC+TGG | - | chr4_4:22740698-22740717 | None:intergenic | 20.0% |
| !! | TAACATTGTTCATGTAAATT+GGG | - | chr4_4:22740847-22740866 | None:intergenic | 20.0% |
| !! | ATAACATTGTTCATGTAAAT+TGG | - | chr4_4:22740848-22740867 | None:intergenic | 20.0% |
| !! | TACATGAACAATGTTATATT+TGG | + | chr4_4:22740851-22740870 | Msa0674790:CDS | 20.0% |
| !!! | CTGTTTAATAGTTGTTATTT+AGG | + | chr4_4:22740975-22740994 | Msa0674790:intron | 20.0% |
| ! | GAATGAACATATACGTAATT+AGG | - | chr4_4:22740296-22740315 | None:intergenic | 25.0% |
| ! | TCATGGCAAATTATATAACA+CGG | + | chr4_4:22740382-22740401 | Msa0674790:CDS | 25.0% |
| ! | GCAATTGAATCTTGTTAAAT+TGG | + | chr4_4:22740556-22740575 | Msa0674790:CDS | 25.0% |
| ! | ATATCACTTATCAATCAGAA+AGG | - | chr4_4:22740622-22740641 | None:intergenic | 25.0% |
| ! | TACTTATGTGAAGACAATAA+TGG | + | chr4_4:22740805-22740824 | Msa0674790:CDS | 25.0% |
| ! | ATAACAACTATTAAACAGAG+AGG | - | chr4_4:22740973-22740992 | None:intergenic | 25.0% |
| ! | GAATGAACATATACGTAATT+AGG | - | chr4_4:22740296-22740315 | None:intergenic | 25.0% |
| ! | TCATGGCAAATTATATAACA+CGG | + | chr4_4:22740382-22740401 | Msa0674790:CDS | 25.0% |
| ! | GCAATTGAATCTTGTTAAAT+TGG | + | chr4_4:22740556-22740575 | Msa0674790:CDS | 25.0% |
| ! | ATATCACTTATCAATCAGAA+AGG | - | chr4_4:22740622-22740641 | None:intergenic | 25.0% |
| ! | TACTTATGTGAAGACAATAA+TGG | + | chr4_4:22740805-22740824 | Msa0674790:CDS | 25.0% |
| ! | ATAACAACTATTAAACAGAG+AGG | - | chr4_4:22740973-22740992 | None:intergenic | 25.0% |
| AACAACCAGATTTGATTCAA+AGG | + | chr4_4:22740157-22740176 | Msa0674790:CDS | 30.0% | |
| TCTATCCTTTGAATCAAATC+TGG | - | chr4_4:22740165-22740184 | None:intergenic | 30.0% | |
| CGTATATGTTCATTCACTAT+TGG | + | chr4_4:22740301-22740320 | Msa0674790:intron | 30.0% | |
| !! | TGTTCATTCACTATTGGTTT+AGG | + | chr4_4:22740307-22740326 | Msa0674790:intron | 30.0% |
| !! | GTTCATTCACTATTGGTTTA+GGG | + | chr4_4:22740308-22740327 | Msa0674790:intron | 30.0% |
| CATGGCAAATTATATAACAC+GGG | + | chr4_4:22740383-22740402 | Msa0674790:CDS | 30.0% | |
| AATCCTAACCTTTACATATC+CGG | - | chr4_4:22740441-22740460 | None:intergenic | 30.0% | |
| ! | ACAGTTTTCATCTTTTTGCT+TGG | - | chr4_4:22740758-22740777 | None:intergenic | 30.0% |
| TTCACATAAGTATCAAGGAA+TGG | - | chr4_4:22740797-22740816 | None:intergenic | 30.0% | |
| TTGTCTTCACATAAGTATCA+AGG | - | chr4_4:22740802-22740821 | None:intergenic | 30.0% | |
| !! | TTGTTATTTAGGACTGTTAG+AGG | + | chr4_4:22740986-22741005 | Msa0674790:intron | 30.0% |
| ! | TGTTATTTAGGACTGTTAGA+GGG | + | chr4_4:22740987-22741006 | Msa0674790:intron | 30.0% |
| ! | TGTTCTGCTATTCCTATTTT+TGG | + | chr4_4:22741044-22741063 | Msa0674790:intron | 30.0% |
| !! | GTTCTGCTATTCCTATTTTT+GGG | + | chr4_4:22741045-22741064 | Msa0674790:intron | 30.0% |
| !! | GTGTTGTTTGTTCTATTTCA+AGG | + | chr4_4:22741100-22741119 | Msa0674790:intron | 30.0% |
| TCTTAAACTTGTGTGTCAAT+AGG | - | chr4_4:22741233-22741252 | None:intergenic | 30.0% | |
| AACAACCAGATTTGATTCAA+AGG | + | chr4_4:22740157-22740176 | Msa0674790:CDS | 30.0% | |
| TCTATCCTTTGAATCAAATC+TGG | - | chr4_4:22740165-22740184 | None:intergenic | 30.0% | |
| CGTATATGTTCATTCACTAT+TGG | + | chr4_4:22740301-22740320 | Msa0674790:intron | 30.0% | |
| !! | TGTTCATTCACTATTGGTTT+AGG | + | chr4_4:22740307-22740326 | Msa0674790:intron | 30.0% |
| !! | GTTCATTCACTATTGGTTTA+GGG | + | chr4_4:22740308-22740327 | Msa0674790:intron | 30.0% |
| CATGGCAAATTATATAACAC+GGG | + | chr4_4:22740383-22740402 | Msa0674790:CDS | 30.0% | |
| AATCCTAACCTTTACATATC+CGG | - | chr4_4:22740441-22740460 | None:intergenic | 30.0% | |
| ! | ACAGTTTTCATCTTTTTGCT+TGG | - | chr4_4:22740758-22740777 | None:intergenic | 30.0% |
| TTCACATAAGTATCAAGGAA+TGG | - | chr4_4:22740797-22740816 | None:intergenic | 30.0% | |
| TTGTCTTCACATAAGTATCA+AGG | - | chr4_4:22740802-22740821 | None:intergenic | 30.0% | |
| !! | TTGTTATTTAGGACTGTTAG+AGG | + | chr4_4:22740986-22741005 | Msa0674790:intron | 30.0% |
| ! | TGTTATTTAGGACTGTTAGA+GGG | + | chr4_4:22740987-22741006 | Msa0674790:intron | 30.0% |
| ! | TGTTCTGCTATTCCTATTTT+TGG | + | chr4_4:22741044-22741063 | Msa0674790:intron | 30.0% |
| !! | GTTCTGCTATTCCTATTTTT+GGG | + | chr4_4:22741045-22741064 | Msa0674790:intron | 30.0% |
| !! | GTGTTGTTTGTTCTATTTCA+AGG | + | chr4_4:22741100-22741119 | Msa0674790:intron | 30.0% |
| TCTTAAACTTGTGTGTCAAT+AGG | - | chr4_4:22741233-22741252 | None:intergenic | 30.0% | |
| AATGGAGTTACTAGAGAGAT+TGG | + | chr4_4:22739993-22740012 | Msa0674790:CDS | 35.0% | |
| AGTCAACTTGAACAGAATGA+TGG | + | chr4_4:22740120-22740139 | Msa0674790:CDS | 35.0% | |
| GAAAACATTTACCTTCGGAA+TGG | - | chr4_4:22740229-22740248 | None:intergenic | 35.0% | |
| ATCCTAACCTTTACATATCC+GGG | - | chr4_4:22740440-22740459 | None:intergenic | 35.0% | |
| ATTGGTCGATGAACATCAAA+AGG | + | chr4_4:22740574-22740593 | Msa0674790:CDS | 35.0% | |
| GTGAAGACAATAATGGTCAA+AGG | + | chr4_4:22740812-22740831 | Msa0674790:CDS | 35.0% | |
| AAGAGCTTGTGCAACATAAT+TGG | + | chr4_4:22740912-22740931 | Msa0674790:CDS | 35.0% | |
| AACAACACACTCCCAAAAAT+AGG | - | chr4_4:22741059-22741078 | None:intergenic | 35.0% | |
| !!! | TATTTTTGGGAGTGTGTTGT+TGG | + | chr4_4:22741058-22741077 | Msa0674790:intron | 35.0% |
| AAAATTTGATCAAGCCTCGT+GGG | + | chr4_4:22741133-22741152 | Msa0674790:CDS | 35.0% | |
| TATCTCACGAGGATAAACAA+GGG | + | chr4_4:22741190-22741209 | Msa0674790:CDS | 35.0% | |
| !! | GAATAAGCTGATTTTTGCAC+CGG | + | chr4_4:22741251-22741270 | Msa0674790:CDS | 35.0% |
| !! | ATTTTTGCACCGGTCAATTT+AGG | + | chr4_4:22741261-22741280 | Msa0674790:CDS | 35.0% |
| !! | TTTTTGCACCGGTCAATTTA+GGG | + | chr4_4:22741262-22741281 | Msa0674790:CDS | 35.0% |
| AATGGAGTTACTAGAGAGAT+TGG | + | chr4_4:22739993-22740012 | Msa0674790:CDS | 35.0% | |
| AGTCAACTTGAACAGAATGA+TGG | + | chr4_4:22740120-22740139 | Msa0674790:CDS | 35.0% | |
| GAAAACATTTACCTTCGGAA+TGG | - | chr4_4:22740229-22740248 | None:intergenic | 35.0% | |
| ATCCTAACCTTTACATATCC+GGG | - | chr4_4:22740440-22740459 | None:intergenic | 35.0% | |
| ATTGGTCGATGAACATCAAA+AGG | + | chr4_4:22740574-22740593 | Msa0674790:CDS | 35.0% | |
| GTGAAGACAATAATGGTCAA+AGG | + | chr4_4:22740812-22740831 | Msa0674790:CDS | 35.0% | |
| AAGAGCTTGTGCAACATAAT+TGG | + | chr4_4:22740912-22740931 | Msa0674790:CDS | 35.0% | |
| AACAACACACTCCCAAAAAT+AGG | - | chr4_4:22741059-22741078 | None:intergenic | 35.0% | |
| !!! | TATTTTTGGGAGTGTGTTGT+TGG | + | chr4_4:22741058-22741077 | Msa0674790:intron | 35.0% |
| AAAATTTGATCAAGCCTCGT+GGG | + | chr4_4:22741133-22741152 | Msa0674790:CDS | 35.0% | |
| TATCTCACGAGGATAAACAA+GGG | + | chr4_4:22741190-22741209 | Msa0674790:CDS | 35.0% | |
| !! | GAATAAGCTGATTTTTGCAC+CGG | + | chr4_4:22741251-22741270 | Msa0674790:CDS | 35.0% |
| !! | ATTTTTGCACCGGTCAATTT+AGG | + | chr4_4:22741261-22741280 | Msa0674790:CDS | 35.0% |
| !! | TTTTTGCACCGGTCAATTTA+GGG | + | chr4_4:22741262-22741281 | Msa0674790:CDS | 35.0% |
| !! | TAGAGAGATTGGTGTTAGAG+AGG | + | chr4_4:22740004-22740023 | Msa0674790:CDS | 40.0% |
| GATGGAGATACTAGAGAGAA+TGG | + | chr4_4:22740036-22740055 | Msa0674790:CDS | 40.0% | |
| ATGTAGAAAGAGAGAGAGAG+AGG | + | chr4_4:22740073-22740092 | Msa0674790:CDS | 40.0% | |
| AGGCAACAACCAAAACTTGT+CGG | + | chr4_4:22740093-22740112 | Msa0674790:CDS | 40.0% | |
| ! | TGACTTTCTCCGACAAGTTT+TGG | - | chr4_4:22740105-22740124 | None:intergenic | 40.0% |
| CAACTTGAACAGAATGATGG+TGG | + | chr4_4:22740123-22740142 | Msa0674790:CDS | 40.0% | |
| CACAACAAGAAATTACCACC+CGG | + | chr4_4:22740419-22740438 | Msa0674790:CDS | 40.0% | |
| ATTACCACCCGGATATGTAA+AGG | + | chr4_4:22740430-22740449 | Msa0674790:CDS | 40.0% | |
| ! | GATTGATGTTGCTGTTGAGA+GGG | + | chr4_4:22740457-22740476 | Msa0674790:CDS | 40.0% |
| TTGCCTATACCTGTTGAAGA+AGG | + | chr4_4:22740488-22740507 | Msa0674790:CDS | 40.0% | |
| TCTCCTTCTTCAACAGGTAT+AGG | - | chr4_4:22740494-22740513 | None:intergenic | 40.0% | |
| AAGACATCTCCTTCTTCAAC+AGG | - | chr4_4:22740500-22740519 | None:intergenic | 40.0% | |
| ! | TTGACTGTTGGTGAAGCAAT+AGG | + | chr4_4:22740518-22740537 | Msa0674790:CDS | 40.0% |
| ! | TGACTGTTGGTGAAGCAATA+GGG | + | chr4_4:22740519-22740538 | Msa0674790:CDS | 40.0% |
| TGAAGCAATAGGGACATTTG+TGG | + | chr4_4:22740529-22740548 | Msa0674790:CDS | 40.0% | |
| ! | AACTGATTCAGCACTACGTT+GGG | - | chr4_4:22740729-22740748 | None:intergenic | 40.0% |
| !! | CTATTAAACAGAGAGGTACC+TGG | - | chr4_4:22740966-22740985 | None:intergenic | 40.0% |
| GAAAATTTGATCAAGCCTCG+TGG | + | chr4_4:22741132-22741151 | Msa0674790:CDS | 40.0% | |
| AACTTATTTACCAACCCACG+AGG | - | chr4_4:22741150-22741169 | None:intergenic | 40.0% | |
| TATCCTCGTGAGATAGATGT+GGG | - | chr4_4:22741185-22741204 | None:intergenic | 40.0% | |
| TTATCCTCGTGAGATAGATG+TGG | - | chr4_4:22741186-22741205 | None:intergenic | 40.0% | |
| CTATCTCACGAGGATAAACA+AGG | + | chr4_4:22741189-22741208 | Msa0674790:CDS | 40.0% | |
| !! | TAGAGAGATTGGTGTTAGAG+AGG | + | chr4_4:22740004-22740023 | Msa0674790:CDS | 40.0% |
| GATGGAGATACTAGAGAGAA+TGG | + | chr4_4:22740036-22740055 | Msa0674790:CDS | 40.0% | |
| ATGTAGAAAGAGAGAGAGAG+AGG | + | chr4_4:22740073-22740092 | Msa0674790:CDS | 40.0% | |
| AGGCAACAACCAAAACTTGT+CGG | + | chr4_4:22740093-22740112 | Msa0674790:CDS | 40.0% | |
| ! | TGACTTTCTCCGACAAGTTT+TGG | - | chr4_4:22740105-22740124 | None:intergenic | 40.0% |
| CAACTTGAACAGAATGATGG+TGG | + | chr4_4:22740123-22740142 | Msa0674790:CDS | 40.0% | |
| CACAACAAGAAATTACCACC+CGG | + | chr4_4:22740419-22740438 | Msa0674790:CDS | 40.0% | |
| ATTACCACCCGGATATGTAA+AGG | + | chr4_4:22740430-22740449 | Msa0674790:CDS | 40.0% | |
| ! | GATTGATGTTGCTGTTGAGA+GGG | + | chr4_4:22740457-22740476 | Msa0674790:CDS | 40.0% |
| TTGCCTATACCTGTTGAAGA+AGG | + | chr4_4:22740488-22740507 | Msa0674790:CDS | 40.0% | |
| TCTCCTTCTTCAACAGGTAT+AGG | - | chr4_4:22740494-22740513 | None:intergenic | 40.0% | |
| AAGACATCTCCTTCTTCAAC+AGG | - | chr4_4:22740500-22740519 | None:intergenic | 40.0% | |
| ! | TTGACTGTTGGTGAAGCAAT+AGG | + | chr4_4:22740518-22740537 | Msa0674790:CDS | 40.0% |
| ! | TGACTGTTGGTGAAGCAATA+GGG | + | chr4_4:22740519-22740538 | Msa0674790:CDS | 40.0% |
| TGAAGCAATAGGGACATTTG+TGG | + | chr4_4:22740529-22740548 | Msa0674790:CDS | 40.0% | |
| ! | AACTGATTCAGCACTACGTT+GGG | - | chr4_4:22740729-22740748 | None:intergenic | 40.0% |
| !! | CTATTAAACAGAGAGGTACC+TGG | - | chr4_4:22740966-22740985 | None:intergenic | 40.0% |
| GAAAATTTGATCAAGCCTCG+TGG | + | chr4_4:22741132-22741151 | Msa0674790:CDS | 40.0% | |
| AACTTATTTACCAACCCACG+AGG | - | chr4_4:22741150-22741169 | None:intergenic | 40.0% | |
| TATCCTCGTGAGATAGATGT+GGG | - | chr4_4:22741185-22741204 | None:intergenic | 40.0% | |
| TTATCCTCGTGAGATAGATG+TGG | - | chr4_4:22741186-22741205 | None:intergenic | 40.0% | |
| CTATCTCACGAGGATAAACA+AGG | + | chr4_4:22741189-22741208 | Msa0674790:CDS | 40.0% | |
| TTAGAGAGGCAGACTCATGA+TGG | + | chr4_4:22740018-22740037 | Msa0674790:CDS | 45.0% | |
| !! | AACAGAATGATGGTGGAGAG+AGG | + | chr4_4:22740130-22740149 | Msa0674790:CDS | 45.0% |
| AAGAGGGCTGCAAGAATCTT+TGG | - | chr4_4:22740196-22740215 | None:intergenic | 45.0% | |
| TGCCATGAGCAACCAAATGT+CGG | - | chr4_4:22740370-22740389 | None:intergenic | 45.0% | |
| CTAACCTTTACATATCCGGG+TGG | - | chr4_4:22740437-22740456 | None:intergenic | 45.0% | |
| CACCCGGATATGTAAAGGTT+AGG | + | chr4_4:22740435-22740454 | Msa0674790:CDS | 45.0% | |
| ! | GGATTGATGTTGCTGTTGAG+AGG | + | chr4_4:22740456-22740475 | Msa0674790:CDS | 45.0% |
| GAAGGAGATGTCTTGACTGT+TGG | + | chr4_4:22740506-22740525 | Msa0674790:CDS | 45.0% | |
| CAATAGGGACATTTGTGGCA+TGG | + | chr4_4:22740534-22740553 | Msa0674790:CDS | 45.0% | |
| ! | ACTGATTCAGCACTACGTTG+GGG | - | chr4_4:22740728-22740747 | None:intergenic | 45.0% |
| ! | CAACTGATTCAGCACTACGT+TGG | - | chr4_4:22740730-22740749 | None:intergenic | 45.0% |
| GAAAACTGTGAAGCCTGCTA+TGG | + | chr4_4:22740769-22740788 | Msa0674790:CDS | 45.0% | |
| TCAAGGAATGGTACCATAGC+AGG | - | chr4_4:22740785-22740804 | None:intergenic | 45.0% | |
| GGCATATACAGCTACAACAG+TGG | - | chr4_4:22740945-22740964 | None:intergenic | 45.0% | |
| CTGTTGTAGCTGTATATGCC+AGG | + | chr4_4:22740945-22740964 | Msa0674790:CDS | 45.0% | |
| ATCCTCGTGAGATAGATGTG+GGG | - | chr4_4:22741184-22741203 | None:intergenic | 45.0% | |
| TTAGAGAGGCAGACTCATGA+TGG | + | chr4_4:22740018-22740037 | Msa0674790:CDS | 45.0% | |
| !! | AACAGAATGATGGTGGAGAG+AGG | + | chr4_4:22740130-22740149 | Msa0674790:CDS | 45.0% |
| AAGAGGGCTGCAAGAATCTT+TGG | - | chr4_4:22740196-22740215 | None:intergenic | 45.0% | |
| TGCCATGAGCAACCAAATGT+CGG | - | chr4_4:22740370-22740389 | None:intergenic | 45.0% | |
| CTAACCTTTACATATCCGGG+TGG | - | chr4_4:22740437-22740456 | None:intergenic | 45.0% | |
| CACCCGGATATGTAAAGGTT+AGG | + | chr4_4:22740435-22740454 | Msa0674790:CDS | 45.0% | |
| ! | GGATTGATGTTGCTGTTGAG+AGG | + | chr4_4:22740456-22740475 | Msa0674790:CDS | 45.0% |
| GAAGGAGATGTCTTGACTGT+TGG | + | chr4_4:22740506-22740525 | Msa0674790:CDS | 45.0% | |
| CAATAGGGACATTTGTGGCA+TGG | + | chr4_4:22740534-22740553 | Msa0674790:CDS | 45.0% | |
| ! | ACTGATTCAGCACTACGTTG+GGG | - | chr4_4:22740728-22740747 | None:intergenic | 45.0% |
| ! | CAACTGATTCAGCACTACGT+TGG | - | chr4_4:22740730-22740749 | None:intergenic | 45.0% |
| GAAAACTGTGAAGCCTGCTA+TGG | + | chr4_4:22740769-22740788 | Msa0674790:CDS | 45.0% | |
| TCAAGGAATGGTACCATAGC+AGG | - | chr4_4:22740785-22740804 | None:intergenic | 45.0% | |
| GGCATATACAGCTACAACAG+TGG | - | chr4_4:22740945-22740964 | None:intergenic | 45.0% | |
| CTGTTGTAGCTGTATATGCC+AGG | + | chr4_4:22740945-22740964 | Msa0674790:CDS | 45.0% | |
| ATCCTCGTGAGATAGATGTG+GGG | - | chr4_4:22741184-22741203 | None:intergenic | 45.0% | |
| GAATGGCGTCAAGTGCAAGA+GGG | - | chr4_4:22740212-22740231 | None:intergenic | 50.0% | |
| ATCATCCCCATGCCGACATT+TGG | + | chr4_4:22740355-22740374 | Msa0674790:CDS | 50.0% | |
| AGCAACCAAATGTCGGCATG+GGG | - | chr4_4:22740363-22740382 | None:intergenic | 50.0% | |
| GAGCAACCAAATGTCGGCAT+GGG | - | chr4_4:22740364-22740383 | None:intergenic | 50.0% | |
| TGAGCAACCAAATGTCGGCA+TGG | - | chr4_4:22740365-22740384 | None:intergenic | 50.0% | |
| TGCCGACATTTGGTTGCTCA+TGG | + | chr4_4:22740365-22740384 | Msa0674790:CDS | 50.0% | |
| TTTGATCAAGCCTCGTGGGT+TGG | + | chr4_4:22741137-22741156 | Msa0674790:CDS | 50.0% | |
| ATCCCCACATCTATCTCACG+AGG | + | chr4_4:22741179-22741198 | Msa0674790:CDS | 50.0% | |
| GAATGGCGTCAAGTGCAAGA+GGG | - | chr4_4:22740212-22740231 | None:intergenic | 50.0% | |
| ATCATCCCCATGCCGACATT+TGG | + | chr4_4:22740355-22740374 | Msa0674790:CDS | 50.0% | |
| AGCAACCAAATGTCGGCATG+GGG | - | chr4_4:22740363-22740382 | None:intergenic | 50.0% | |
| GAGCAACCAAATGTCGGCAT+GGG | - | chr4_4:22740364-22740383 | None:intergenic | 50.0% | |
| TGAGCAACCAAATGTCGGCA+TGG | - | chr4_4:22740365-22740384 | None:intergenic | 50.0% | |
| TGCCGACATTTGGTTGCTCA+TGG | + | chr4_4:22740365-22740384 | Msa0674790:CDS | 50.0% | |
| TTTGATCAAGCCTCGTGGGT+TGG | + | chr4_4:22741137-22741156 | Msa0674790:CDS | 50.0% | |
| ATCCCCACATCTATCTCACG+AGG | + | chr4_4:22741179-22741198 | Msa0674790:CDS | 50.0% | |
| GGAATGGCGTCAAGTGCAAG+AGG | - | chr4_4:22740213-22740232 | None:intergenic | 55.0% | |
| TGCACTTGACGCCATTCCGA+AGG | + | chr4_4:22740215-22740234 | Msa0674790:CDS | 55.0% | |
| GGAATGGCGTCAAGTGCAAG+AGG | - | chr4_4:22740213-22740232 | None:intergenic | 55.0% | |
| TGCACTTGACGCCATTCCGA+AGG | + | chr4_4:22740215-22740234 | Msa0674790:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 22739982 | 22741287 | 22739982 | ID=Msa0674790;Name=Msa0674790 |
| chr4_4 | mRNA | 22739982 | 22741287 | 22739982 | ID=Msa0674790-mRNA-1;Parent=Msa0674790;Name=Msa0674790-mRNA-1;_AED=0.17;_eAED=0.18;_QI=0|0|0|1|1|1|4|0|320 |
| chr4_4 | exon | 22739982 | 22740236 | 22739982 | ID=Msa0674790-mRNA-1:exon:6353;Parent=Msa0674790-mRNA-1 |
| chr4_4 | exon | 22740329 | 22740595 | 22740329 | ID=Msa0674790-mRNA-1:exon:6354;Parent=Msa0674790-mRNA-1 |
| chr4_4 | exon | 22740692 | 22740966 | 22740692 | ID=Msa0674790-mRNA-1:exon:6355;Parent=Msa0674790-mRNA-1 |
| chr4_4 | exon | 22741122 | 22741287 | 22741122 | ID=Msa0674790-mRNA-1:exon:6356;Parent=Msa0674790-mRNA-1 |
| chr4_4 | CDS | 22739982 | 22740236 | 22739982 | ID=Msa0674790-mRNA-1:cds;Parent=Msa0674790-mRNA-1 |
| chr4_4 | CDS | 22740329 | 22740595 | 22740329 | ID=Msa0674790-mRNA-1:cds;Parent=Msa0674790-mRNA-1 |
| chr4_4 | CDS | 22740692 | 22740966 | 22740692 | ID=Msa0674790-mRNA-1:cds;Parent=Msa0674790-mRNA-1 |
| chr4_4 | CDS | 22741122 | 22741287 | 22741122 | ID=Msa0674790-mRNA-1:cds;Parent=Msa0674790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
