Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855300 | AES60129.2 | 85.333 | 225 | 30 | 2 | 325 | 549 | 28 | 249 | 4.94e-120 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855300 | G7I2F3 | 85.333 | 225 | 30 | 2 | 325 | 549 | 28 | 249 | 2.36e-120 | 366 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0103020 | Msa0855300 | 0.842004 | 3.368372e-58 | -8.615850e-47 |
| Msa0674790 | Msa0855300 | 0.938740 | 4.078787e-99 | -8.615850e-47 |
| Msa0766630 | Msa0855300 | 0.800456 | 1.429037e-48 | -8.615850e-47 |
| Msa0479340 | Msa0855300 | 0.803731 | 3.030795e-49 | -8.615850e-47 |
| Msa0284840 | Msa0855300 | 0.862677 | 4.278962e-64 | -8.615850e-47 |
| Msa0284850 | Msa0855300 | 0.835073 | 2.075080e-56 | -8.615850e-47 |
| Msa0855300 | Msa0917600 | 0.835295 | 1.823956e-56 | -8.615850e-47 |
| Msa0855300 | Msa0988700 | 0.843601 | 1.267797e-58 | -8.615850e-47 |
| Msa0855300 | Msa1021760 | 0.941258 | 5.688932e-101 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855300 | MtrunA17_Chr6g0466851 | 31.300 | 623 | 325 | 16 | 37 | 569 | 7 | 616 | 1.34e-75 | 256 |
| Msa0855300 | MtrunA17_Chr2g0307151 | 33.718 | 433 | 196 | 8 | 131 | 550 | 6 | 360 | 4.83e-67 | 223 |
| Msa0855300 | MtrunA17_Chr5g0420271 | 34.375 | 384 | 160 | 10 | 133 | 456 | 56 | 407 | 1.78e-48 | 174 |
| Msa0855300 | MtrunA17_Chr2g0305931 | 37.551 | 245 | 126 | 7 | 224 | 449 | 1 | 237 | 1.66e-33 | 128 |
| Msa0855300 | MtrunA17_Chr2g0325841 | 25.607 | 535 | 324 | 20 | 84 | 568 | 534 | 1044 | 1.46e-22 | 102 |
| Msa0855300 | MtrunA17_Chr4g0010671 | 25.926 | 432 | 251 | 17 | 67 | 450 | 29 | 439 | 4.92e-22 | 100 |
| Msa0855300 | MtrunA17_Chr7g0227751 | 30.159 | 252 | 112 | 4 | 377 | 569 | 2 | 248 | 6.50e-22 | 98.6 |
| Msa0855300 | MtrunA17_Chr8g0343271 | 28.390 | 236 | 115 | 5 | 388 | 569 | 2 | 237 | 1.37e-21 | 96.7 |
| Msa0855300 | MtrunA17_Chr4g0024831 | 60.526 | 76 | 30 | 0 | 107 | 182 | 1 | 76 | 7.50e-21 | 87.4 |
| Msa0855300 | MtrunA17_Chr2g0305311 | 28.063 | 253 | 156 | 10 | 68 | 313 | 164 | 397 | 1.32e-14 | 76.6 |
| Msa0855300 | MtrunA17_Chr5g0420281 | 52.542 | 59 | 27 | 1 | 544 | 601 | 2 | 60 | 3.97e-14 | 68.6 |
| Msa0855300 | MtrunA17_Chr3g0097741 | 38.961 | 77 | 40 | 1 | 1 | 70 | 283 | 359 | 3.85e-13 | 72.8 |
| Msa0855300 | MtrunA17_Chr7g0242031 | 37.662 | 77 | 41 | 1 | 1 | 70 | 231 | 307 | 1.94e-12 | 69.7 |
| Msa0855300 | MtrunA17_Chr8g0393091 | 27.879 | 165 | 100 | 5 | 1 | 163 | 277 | 424 | 1.95e-11 | 67.4 |
| Msa0855300 | MtrunA17_Chr5g0415911 | 40.260 | 77 | 39 | 1 | 1 | 70 | 268 | 344 | 2.39e-11 | 66.2 |
| Msa0855300 | MtrunA17_Chr7g0226101 | 37.662 | 77 | 41 | 1 | 1 | 70 | 178 | 254 | 4.14e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 128 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCATGATTACCAAGATTT+TGG | 0.082224 | 5_4:-48509785 | Msa0855300:CDS |
| TACATGGACAATGTTATATT+TGG | 0.181682 | 5_4:-48507106 | Msa0855300:CDS |
| ATAACATTGTCCATGTAAAT+TGG | 0.205829 | 5_4:+48507112 | None:intergenic |
| CGTGTTAGGGGTTATGGTTT+TGG | 0.212483 | 5_4:-48508069 | Msa0855300:CDS |
| CTAACACGGCCAGAGTATTT+TGG | 0.221589 | 5_4:+48508084 | None:intergenic |
| ACGTCTCACTCCTGAATTTC+AGG | 0.228088 | 5_4:-48509008 | Msa0855300:intron |
| GCAATTGAATCTTGTTAAAT+TGG | 0.231432 | 5_4:-48507401 | Msa0855300:CDS |
| TCTGGCCGTGTTAGGGGTTA+TGG | 0.265442 | 5_4:-48508075 | Msa0855300:CDS |
| TTCCAATTAGTATGGAAAAT+TGG | 0.270100 | 5_4:-48509357 | Msa0855300:CDS |
| AAGAGCTTGTGCAACATAAT+TGG | 0.275099 | 5_4:-48507045 | Msa0855300:CDS |
| CAAAATACTCTGGCCGTGTT+AGG | 0.280957 | 5_4:-48508083 | Msa0855300:CDS |
| TGACTTTCTCCGACAAGTTT+TGG | 0.308285 | 5_4:+48507855 | None:intergenic |
| CTTTCTTTCTTCAGGTTCAA+TGG | 0.308490 | 5_4:-48509456 | Msa0855300:intron |
| CACTTAACATGGCATGAATA+TGG | 0.312857 | 5_4:-48509866 | Msa0855300:CDS |
| TCGGCTGGTTCCAATTAGTA+TGG | 0.318264 | 5_4:-48509365 | Msa0855300:CDS |
| TCTTAAACTTGTGTGTCAAT+AGG | 0.329336 | 5_4:+48506727 | None:intergenic |
| AACTGATTCAGCACTACGTT+GGG | 0.333670 | 5_4:+48507231 | None:intergenic |
| TCTATCCTTTGAATCAAATC+TGG | 0.335548 | 5_4:+48507795 | None:intergenic |
| TTTCTTCTTTCCCAAAATCT+TGG | 0.353766 | 5_4:+48509774 | None:intergenic |
| AGGTCGTCTCGAAGAAAATA+TGG | 0.371889 | 5_4:-48508555 | Msa0855300:intron |
| AAGAGGGCTGCAAGAATCTT+TGG | 0.375507 | 5_4:+48507764 | None:intergenic |
| TCTCCTTCTTCAACAGGTAT+AGG | 0.386213 | 5_4:+48507466 | None:intergenic |
| AAAATACTCTGGCCGTGTTA+GGG | 0.386951 | 5_4:-48508082 | Msa0855300:CDS |
| AGAAAATCACGGATGGGATT+AGG | 0.394627 | 5_4:-48508575 | Msa0855300:CDS |
| AATCCTAACCTTTACATATC+CGG | 0.395875 | 5_4:+48507519 | None:intergenic |
| ATCATCCCCATGCCGACATT+TGG | 0.400493 | 5_4:-48507602 | Msa0855300:CDS |
| AAAGACATTACCTGAAATTC+AGG | 0.407942 | 5_4:+48508998 | None:intergenic |
| TAACATTGTCCATGTAAATT+GGG | 0.416344 | 5_4:+48507113 | None:intergenic |
| TCGTAATGATGTTCTTCAAT+TGG | 0.418175 | 5_4:-48508121 | Msa0855300:CDS |
| TGGATGCATCGTTCGTCGGC+TGG | 0.424894 | 5_4:-48509380 | Msa0855300:CDS |
| CAATATAACTGACAAAACTT+TGG | 0.426522 | 5_4:+48509401 | None:intergenic |
| TTGACTGTTGGTGAAGCAAT+AGG | 0.427110 | 5_4:-48507439 | Msa0855300:CDS |
| TCCTGCAGATTCTCCTCAAT+GGG | 0.439750 | 5_4:-48509816 | Msa0855300:CDS |
| CCACATAGAACCGGAGCATT+GGG | 0.447151 | 5_4:-48509047 | Msa0855300:CDS |
| GGATGGAGTGATTGATAAAG+AGG | 0.450299 | 5_4:-48508340 | Msa0855300:CDS |
| ATCCTGCAGATTCTCCTCAA+TGG | 0.451020 | 5_4:-48509817 | Msa0855300:CDS |
| AAGACATCTCCTTCTTCAAC+AGG | 0.451832 | 5_4:+48507460 | None:intergenic |
| CACCCGGATATGTAAAGGTT+AGG | 0.464177 | 5_4:-48507522 | Msa0855300:CDS |
| TCAAGGAATGGTACCATAGC+AGG | 0.470566 | 5_4:+48507175 | None:intergenic |
| TTGTCTTCACATAAGTATCA+AGG | 0.481642 | 5_4:+48507158 | None:intergenic |
| ATTGGTCGATGAACATCAAA+AGG | 0.484853 | 5_4:-48507383 | Msa0855300:intron |
| CCCACATAGAACCGGAGCAT+TGG | 0.486223 | 5_4:-48509048 | Msa0855300:CDS |
| ATCCTAACCTTTACATATCC+GGG | 0.487205 | 5_4:+48507520 | None:intergenic |
| TCCCATTGAGGAGAATCTGC+AGG | 0.494645 | 5_4:+48509815 | None:intergenic |
| CCAATGCTCCGGTTCTATGT+GGG | 0.497189 | 5_4:+48509048 | None:intergenic |
| TTGCCTATACCTGTTGAAGA+AGG | 0.500655 | 5_4:-48507469 | Msa0855300:CDS |
| TACTTATGTGAAGACAATAA+TGG | 0.501635 | 5_4:-48507152 | Msa0855300:CDS |
| CGTCTTGCATTGTCTACTGA+TGG | 0.508167 | 5_4:-48509743 | Msa0855300:CDS |
| CCCAATGCTCCGGTTCTATG+TGG | 0.510788 | 5_4:+48509047 | None:intergenic |
| GATTGCTGCCCATGTTGGTA+AGG | 0.514063 | 5_4:-48508361 | Msa0855300:CDS |
| AACAACCAGATTTGATTCAA+AGG | 0.523615 | 5_4:-48507800 | Msa0855300:CDS |
| TGCCGACATTTGGTTGCTCA+TGG | 0.524359 | 5_4:-48507592 | Msa0855300:CDS |
| CAGGTTCAATGGAATGCTCT+AGG | 0.525756 | 5_4:-48509445 | Msa0855300:CDS |
| GAGCAACCAAATGTCGGCAT+GGG | 0.527172 | 5_4:+48507596 | None:intergenic |
| TGACTGTTGGTGAAGCAATA+GGG | 0.528262 | 5_4:-48507438 | Msa0855300:CDS |
| AGATAAATGGCTTCAAGTAA+TGG | 0.533827 | 5_4:-48509634 | Msa0855300:CDS |
| GAACATCTTCCAAAATACTC+TGG | 0.537949 | 5_4:-48508093 | Msa0855300:CDS |
| TATGTATCCCCACATAGAAC+CGG | 0.539807 | 5_4:-48509056 | Msa0855300:CDS |
| TGAAGCAATAGGGACATTTG+TGG | 0.543469 | 5_4:-48507428 | Msa0855300:CDS |
| ATATTGGATGCATCGTTCGT+CGG | 0.549916 | 5_4:-48509384 | Msa0855300:CDS |
| CACATAGACTCTTGTCAATG+TGG | 0.550998 | 5_4:+48509120 | None:intergenic |
| GCTGCCCATGTTGGTAAGGA+TGG | 0.556998 | 5_4:-48508357 | Msa0855300:CDS |
| ACAAAGGCATCCCAATGCTC+CGG | 0.559334 | 5_4:+48509037 | None:intergenic |
| GAAAACATTTACCTTCGGAA+TGG | 0.559486 | 5_4:+48507731 | None:intergenic |
| AATGGTGGAAGTAGTTCAAG+AGG | 0.560046 | 5_4:-48509616 | Msa0855300:CDS |
| TGCACTTGACGCCATTCCGA+AGG | 0.560181 | 5_4:-48507742 | Msa0855300:intron |
| ATTACCACCCGGATATGTAA+AGG | 0.560408 | 5_4:-48507527 | Msa0855300:CDS |
| TTTGATCAAGCCTCGTGGGT+TGG | 0.562858 | 5_4:-48506820 | Msa0855300:CDS |
| AGTCAACTTGAACAGAATGA+TGG | 0.564479 | 5_4:-48507837 | Msa0855300:CDS |
| CTGTTGTAGCTGTATATGCC+AGG | 0.564555 | 5_4:-48507012 | Msa0855300:intron |
| TAACATGGCATGAATATGGA+AGG | 0.565515 | 5_4:-48509862 | Msa0855300:CDS |
| TCCATATAGAAAATCACGGA+TGG | 0.568332 | 5_4:-48508582 | Msa0855300:CDS |
| ACAATCAGTCCCAATTTACA+TGG | 0.572574 | 5_4:-48507122 | Msa0855300:CDS |
| TATCCTCGTGAGATAGATGT+GGG | 0.573842 | 5_4:+48506775 | None:intergenic |
| GTGAAGACAATAATGGTCAA+AGG | 0.578657 | 5_4:-48507145 | Msa0855300:CDS |
| TGAGCAACCAAATGTCGGCA+TGG | 0.581831 | 5_4:+48507595 | None:intergenic |
| GAATATGGAAGGGTTGCAGA+TGG | 0.582051 | 5_4:-48509851 | Msa0855300:CDS |
| CAACTGATTCAGCACTACGT+TGG | 0.583155 | 5_4:+48507230 | None:intergenic |
| CACTCCATCCTTACCAACAT+GGG | 0.583925 | 5_4:+48508353 | None:intergenic |
| CTATCTCACGAGGATAAACA+AGG | 0.584696 | 5_4:-48506768 | Msa0855300:CDS |
| AAAATTTGATCAAGCCTCGT+GGG | 0.588114 | 5_4:-48506824 | Msa0855300:CDS |
| AAATACTCTGGCCGTGTTAG+GGG | 0.594318 | 5_4:-48508081 | Msa0855300:CDS |
| GAAAATTTGATCAAGCCTCG+TGG | 0.594365 | 5_4:-48506825 | Msa0855300:CDS |
| AGTGAGACGTTGAGCTACAA+AGG | 0.595851 | 5_4:+48509021 | None:intergenic |
| TTCACATAAGTATCAAGGAA+TGG | 0.596460 | 5_4:+48507163 | None:intergenic |
| CAATAGGGACATTTGTGGCA+TGG | 0.597695 | 5_4:-48507423 | Msa0855300:CDS |
| TGGGGATACATATCATTCGA+AGG | 0.598002 | 5_4:+48509067 | None:intergenic |
| GAAAACTGTGAAGCCTGCTA+TGG | 0.600236 | 5_4:-48507188 | Msa0855300:CDS |
| AAAACTCACCCTAAATTGAC+CGG | 0.600406 | 5_4:+48506687 | None:intergenic |
| AACAGAATGATGGTGGAGAG+AGG | 0.602687 | 5_4:-48507827 | Msa0855300:CDS |
| TCACTCCATCCTTACCAACA+TGG | 0.603845 | 5_4:+48508352 | None:intergenic |
| TGCCATGAGCAACCAAATGT+CGG | 0.603911 | 5_4:+48507590 | None:intergenic |
| GATGAGAGAGGAAAAGACCT+TGG | 0.604046 | 5_4:-48508144 | Msa0855300:CDS |
| CAATGCTCCGGTTCTATGTG+GGG | 0.604052 | 5_4:+48509049 | None:intergenic |
| CAACTTGAACAGAATGATGG+TGG | 0.604122 | 5_4:-48507834 | Msa0855300:CDS |
| TAAATGGCTTCAAGTAATGG+TGG | 0.604383 | 5_4:-48509631 | Msa0855300:CDS |
| ACTGATGGAATAAACCCTCA+TGG | 0.604806 | 5_4:-48509728 | Msa0855300:intron |
| GGCATATACAGCTACAACAG+TGG | 0.608828 | 5_4:+48507015 | None:intergenic |
| CCATATAGAAAATCACGGAT+GGG | 0.609273 | 5_4:-48508581 | Msa0855300:CDS |
| CAAAACCATAACCCCTAACA+CGG | 0.609774 | 5_4:+48508070 | None:intergenic |
| GGATTGATGTTGCTGTTGAG+AGG | 0.609831 | 5_4:-48507501 | Msa0855300:CDS |
| GAAGGAGATGTCTTGACTGT+TGG | 0.612130 | 5_4:-48507451 | Msa0855300:CDS |
| AAGATGCAAAGCACTTAACA+TGG | 0.618145 | 5_4:-48509877 | Msa0855300:CDS |
| AGGCAACAACCAAAACTTGT+CGG | 0.621046 | 5_4:-48507864 | Msa0855300:CDS |
| GGAATGGCGTCAAGTGCAAG+AGG | 0.621123 | 5_4:+48507747 | None:intergenic |
| GTGTGGATTGCTGCCCATGT+TGG | 0.622777 | 5_4:-48508366 | Msa0855300:CDS |
| GATTGATGTTGCTGTTGAGA+GGG | 0.626189 | 5_4:-48507500 | Msa0855300:CDS |
| CACAACAAGAAATTACCACC+CGG | 0.626978 | 5_4:-48507538 | Msa0855300:CDS |
| TCATGGCAAATTATATAACA+CGG | 0.629389 | 5_4:-48507575 | Msa0855300:CDS |
| GACATCCATATAGAAAATCA+CGG | 0.630310 | 5_4:-48508586 | Msa0855300:CDS |
| AGCAACCAAATGTCGGCATG+GGG | 0.630470 | 5_4:+48507597 | None:intergenic |
| CATGGCAAATTATATAACAC+GGG | 0.632665 | 5_4:-48507574 | Msa0855300:CDS |
| TACTACTCTGAATACCATGA+GGG | 0.634314 | 5_4:+48509714 | None:intergenic |
| TTATCCTCGTGAGATAGATG+TGG | 0.636482 | 5_4:+48506774 | None:intergenic |
| AGAGGAAGTTCAGAAAGTTG+CGG | 0.637868 | 5_4:-48508322 | Msa0855300:CDS |
| AATGCTCTAGGTCAACCAGT+TGG | 0.645736 | 5_4:-48509433 | Msa0855300:CDS |
| AACATGGCATGAATATGGAA+GGG | 0.649342 | 5_4:-48509861 | Msa0855300:CDS |
| ACTGATTCAGCACTACGTTG+GGG | 0.663689 | 5_4:+48507232 | None:intergenic |
| AACTTATTTACCAACCCACG+AGG | 0.672003 | 5_4:+48506810 | None:intergenic |
| TCTTTACCTGAAGATGAGAG+AGG | 0.672970 | 5_4:-48508156 | Msa0855300:CDS |
| GAAGAACATCATTACGACCA+AGG | 0.673479 | 5_4:+48508127 | None:intergenic |
| ATCCCCACATCTATCTCACG+AGG | 0.676403 | 5_4:-48506778 | Msa0855300:CDS |
| GAATGGCGTCAAGTGCAAGA+GGG | 0.680502 | 5_4:+48507748 | None:intergenic |
| TGATACCACGTGCATCTGTG+TGG | 0.685481 | 5_4:-48508383 | Msa0855300:CDS |
| TATCTCACGAGGATAAACAA+GGG | 0.704904 | 5_4:-48506767 | Msa0855300:CDS |
| GCAATCCACACAGATGCACG+TGG | 0.728624 | 5_4:+48508378 | None:intergenic |
| CTAACCTTTACATATCCGGG+TGG | 0.731735 | 5_4:+48507523 | None:intergenic |
| ATCCTCGTGAGATAGATGTG+GGG | 0.745850 | 5_4:+48506776 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTTTTTTACAGATAAA+TGG | - | chr5_4:48506938-48506957 | Msa0855300:intron | 10.0% |
| !!! | TATATACTTGTTTTATTATT+TGG | - | chr5_4:48509267-48509286 | Msa0855300:intron | 10.0% |
| !! | TACTCAAAAAAAAAAAAACT+AGG | + | chr5_4:48507739-48507758 | None:intergenic | 15.0% |
| !! | TAAGTATATGTAAAATTGTA+GGG | - | chr5_4:48508053-48508072 | Msa0855300:intron | 15.0% |
| !!! | TTCTTTTTTTTTTGTAGAAT+AGG | + | chr5_4:48508162-48508181 | None:intergenic | 15.0% |
| !!! | ATATAGCTTCTTTTTTTTAT+TGG | - | chr5_4:48508303-48508322 | Msa0855300:intron | 15.0% |
| !! | CTAATTATTTACAATACTTT+AGG | + | chr5_4:48509300-48509319 | None:intergenic | 15.0% |
| !!! | ACCTTACAAAGAAAAAATTT+TGG | - | chr5_4:48507268-48507287 | Msa0855300:CDS | 20.0% |
| !!! | TCCAAAATTTTTTCTTTGTA+AGG | + | chr5_4:48507272-48507291 | None:intergenic | 20.0% |
| !!! | AAAAAATTTTGGATGAAGTT+CGG | - | chr5_4:48507279-48507298 | Msa0855300:intron | 20.0% |
| !! | GTAAGTATATGTAAAATTGT+AGG | - | chr5_4:48508052-48508071 | Msa0855300:intron | 20.0% |
| !! | AAAAAAAAGAAAAAAGAGAC+TGG | - | chr5_4:48508171-48508190 | Msa0855300:CDS | 20.0% |
| !! | TTAAAGAAAACATTTACCTT+CGG | + | chr5_4:48508862-48508881 | None:intergenic | 20.0% |
| !!! | TCAATTTTTTTAGATTTAGC+TGG | + | chr5_4:48509326-48509345 | None:intergenic | 20.0% |
| !!! | CTGTTTAATAGTTGTTATTT+AGG | - | chr5_4:48509603-48509622 | Msa0855300:intron | 20.0% |
| !! | ATCATGATTACCAAGATTTT+GGG | - | chr5_4:48506801-48506820 | Msa0855300:CDS | 25.0% |
| ! | AGTTCAAGAGGAAAAAATAA+TGG | - | chr5_4:48506981-48507000 | Msa0855300:intron | 25.0% |
| ! | AATAATCACTTTCTTTCTTC+AGG | - | chr5_4:48507121-48507140 | Msa0855300:CDS | 25.0% |
| ! | CAATATAACTGACAAAACTT+TGG | + | chr5_4:48507187-48507206 | None:intergenic | 25.0% |
| !!! | CAAAGTTTTGTCAGTTATAT+TGG | - | chr5_4:48507185-48507204 | Msa0855300:CDS | 25.0% |
| ! | TTCCAATTAGTATGGAAAAT+TGG | - | chr5_4:48507228-48507247 | Msa0855300:CDS | 25.0% |
| !! | AAAAATTTTGGATGAAGTTC+GGG | - | chr5_4:48507280-48507299 | Msa0855300:intron | 25.0% |
| !! | TTGCAGAAAGTTTTCATATT+TGG | - | chr5_4:48507383-48507402 | Msa0855300:intron | 25.0% |
| ! | ACATATCTGATAAACATACA+AGG | + | chr5_4:48507882-48507901 | None:intergenic | 25.0% |
| ! | AAAGTTTAGAAACATGAAAG+AGG | - | chr5_4:48508358-48508377 | Msa0855300:CDS | 25.0% |
| ! | GAATGAACATATACGTAATT+AGG | + | chr5_4:48508924-48508943 | None:intergenic | 25.0% |
| ! | TCATGGCAAATTATATAACA+CGG | - | chr5_4:48509010-48509029 | Msa0855300:CDS | 25.0% |
| ! | GCAATTGAATCTTGTTAAAT+TGG | - | chr5_4:48509184-48509203 | Msa0855300:CDS | 25.0% |
| ! | ATATCACTTATCAATCAGAA+AGG | + | chr5_4:48509250-48509269 | None:intergenic | 25.0% |
| ! | TACTTATGTGAAGACAATAA+TGG | - | chr5_4:48509433-48509452 | Msa0855300:CDS | 25.0% |
| ! | TAACATTGTCCATGTAAATT+GGG | + | chr5_4:48509475-48509494 | None:intergenic | 25.0% |
| ! | ATAACATTGTCCATGTAAAT+TGG | + | chr5_4:48509476-48509495 | None:intergenic | 25.0% |
| ! | TACATGGACAATGTTATATT+TGG | - | chr5_4:48509479-48509498 | Msa0855300:intron | 25.0% |
| ! | ATAACAACTATTAAACAGAG+AGG | + | chr5_4:48509601-48509620 | None:intergenic | 25.0% |
| !!! | TGTTTTGCTATTCCTATTTT+TGG | - | chr5_4:48509672-48509691 | Msa0855300:intron | 25.0% |
| !!! | GTTTTGCTATTCCTATTTTT+GGG | - | chr5_4:48509673-48509692 | Msa0855300:intron | 25.0% |
| !!! | TGATCAATTTTTTCCCATTG+AGG | + | chr5_4:48506785-48506804 | None:intergenic | 30.0% |
| ! | GATCATGATTACCAAGATTT+TGG | - | chr5_4:48506800-48506819 | Msa0855300:CDS | 30.0% |
| TTTCTTCTTTCCCAAAATCT+TGG | + | chr5_4:48506814-48506833 | None:intergenic | 30.0% | |
| AGATAAATGGCTTCAAGTAA+TGG | - | chr5_4:48506951-48506970 | Msa0855300:intron | 30.0% | |
| GGAAAAAATAATGGTAAACG+TGG | - | chr5_4:48506990-48507009 | Msa0855300:intron | 30.0% | |
| ATTCATAAAGCTAAAAGTCG+TGG | - | chr5_4:48507032-48507051 | Msa0855300:CDS | 30.0% | |
| !!! | ATACTTTTGAGGTAACTAGT+TGG | - | chr5_4:48507057-48507076 | Msa0855300:CDS | 30.0% |
| ! | CTCCAATTTTCCATACTAAT+TGG | + | chr5_4:48507233-48507252 | None:intergenic | 30.0% |
| GCATGAAAATCGTGTAAAAA+TGG | - | chr5_4:48507412-48507431 | Msa0855300:CDS | 30.0% | |
| AAAGACATTACCTGAAATTC+AGG | + | chr5_4:48507590-48507609 | None:intergenic | 30.0% | |
| !!! | GGCATTACTACAATTTTTTC+TGG | + | chr5_4:48507624-48507643 | None:intergenic | 30.0% |
| CCAAGAATCAACTAATAAGA+TGG | + | chr5_4:48507700-48507719 | None:intergenic | 30.0% | |
| ! | CCATCTTATTAGTTGATTCT+TGG | - | chr5_4:48507697-48507716 | Msa0855300:intron | 30.0% |
| CAGTTATTGTGAACAAAACT+AGG | + | chr5_4:48507765-48507784 | None:intergenic | 30.0% | |
| ATCTGATAAACATACAAGGT+CGG | + | chr5_4:48507878-48507897 | None:intergenic | 30.0% | |
| ! | GATTTTCTATATGGATGTCT+AGG | + | chr5_4:48507998-48508017 | None:intergenic | 30.0% |
| GACATCCATATAGAAAATCA+CGG | - | chr5_4:48507999-48508018 | Msa0855300:intron | 30.0% | |
| TCGTAATGATGTTCTTCAAT+TGG | - | chr5_4:48508464-48508483 | Msa0855300:intron | 30.0% | |
| !! | GTATTTTGGAAGATGTTCTA+AGG | + | chr5_4:48508490-48508509 | None:intergenic | 30.0% |
| AACAACCAGATTTGATTCAA+AGG | - | chr5_4:48508785-48508804 | Msa0855300:intron | 30.0% | |
| TCTATCCTTTGAATCAAATC+TGG | + | chr5_4:48508793-48508812 | None:intergenic | 30.0% | |
| CGTATATGTTCATTCACTAT+TGG | - | chr5_4:48508929-48508948 | Msa0855300:intron | 30.0% | |
| !! | TGTTCATTCACTATTGGTTT+AGG | - | chr5_4:48508935-48508954 | Msa0855300:intron | 30.0% |
| !! | GTTCATTCACTATTGGTTTA+GGG | - | chr5_4:48508936-48508955 | Msa0855300:intron | 30.0% |
| CATGGCAAATTATATAACAC+GGG | - | chr5_4:48509011-48509030 | Msa0855300:CDS | 30.0% | |
| AATCCTAACCTTTACATATC+CGG | + | chr5_4:48509069-48509088 | None:intergenic | 30.0% | |
| ! | ACAGTTTTCATCTTTTTGCT+TGG | + | chr5_4:48509386-48509405 | None:intergenic | 30.0% |
| TTCACATAAGTATCAAGGAA+TGG | + | chr5_4:48509425-48509444 | None:intergenic | 30.0% | |
| TTGTCTTCACATAAGTATCA+AGG | + | chr5_4:48509430-48509449 | None:intergenic | 30.0% | |
| !! | TTGTTATTTAGGACTGTTAG+AGG | - | chr5_4:48509614-48509633 | Msa0855300:CDS | 30.0% |
| ! | TGTTATTTAGGACTGTTAGA+GGG | - | chr5_4:48509615-48509634 | Msa0855300:CDS | 30.0% |
| !! | GTGTTGTTTGTTCTATTTCA+AGG | - | chr5_4:48509728-48509747 | Msa0855300:intron | 30.0% |
| TCTTAAACTTGTGTGTCAAT+AGG | + | chr5_4:48509861-48509880 | None:intergenic | 30.0% | |
| ! | AAGATGCAAAGCACTTAACA+TGG | - | chr5_4:48506708-48506727 | Msa0855300:CDS | 35.0% |
| CACTTAACATGGCATGAATA+TGG | - | chr5_4:48506719-48506738 | Msa0855300:CDS | 35.0% | |
| TAACATGGCATGAATATGGA+AGG | - | chr5_4:48506723-48506742 | Msa0855300:CDS | 35.0% | |
| AACATGGCATGAATATGGAA+GGG | - | chr5_4:48506724-48506743 | Msa0855300:CDS | 35.0% | |
| TACTACTCTGAATACCATGA+GGG | + | chr5_4:48506874-48506893 | None:intergenic | 35.0% | |
| TTACTACTCTGAATACCATG+AGG | + | chr5_4:48506875-48506894 | None:intergenic | 35.0% | |
| TAAATGGCTTCAAGTAATGG+TGG | - | chr5_4:48506954-48506973 | Msa0855300:intron | 35.0% | |
| ! | CTTTCTTTCTTCAGGTTCAA+TGG | - | chr5_4:48507129-48507148 | Msa0855300:CDS | 35.0% |
| AATCGTGTAAAAATGGAAGC+TGG | - | chr5_4:48507419-48507438 | Msa0855300:CDS | 35.0% | |
| ! | GAAGGTTTTACAATGTCTTC+AGG | + | chr5_4:48507503-48507522 | None:intergenic | 35.0% |
| TTGTAGCTTAGTGTTCTTTC+AGG | - | chr5_4:48507906-48507925 | Msa0855300:intron | 35.0% | |
| TCCATATAGAAAATCACGGA+TGG | - | chr5_4:48508003-48508022 | Msa0855300:intron | 35.0% | |
| CCATATAGAAAATCACGGAT+GGG | - | chr5_4:48508004-48508023 | Msa0855300:intron | 35.0% | |
| AAAGAAAAAAGAGACTGGAG+AGG | - | chr5_4:48508176-48508195 | Msa0855300:intron | 35.0% | |
| GAACATCTTCCAAAATACTC+TGG | - | chr5_4:48508492-48508511 | Msa0855300:intron | 35.0% | |
| TGTCGTGGAAAAATGTCTTT+GGG | + | chr5_4:48508548-48508567 | None:intergenic | 35.0% | |
| TTGTCGTGGAAAAATGTCTT+TGG | + | chr5_4:48508549-48508568 | None:intergenic | 35.0% | |
| GATGAAGTGAATGCAATGTT+TGG | - | chr5_4:48508581-48508600 | Msa0855300:CDS | 35.0% | |
| TGGCAAAATGAGTAAGAGAA+TGG | - | chr5_4:48508601-48508620 | Msa0855300:CDS | 35.0% | |
| AATGGAGTTACTAGAGAGAT+TGG | - | chr5_4:48508619-48508638 | Msa0855300:CDS | 35.0% | |
| AGTCAACTTGAACAGAATGA+TGG | - | chr5_4:48508748-48508767 | Msa0855300:intron | 35.0% | |
| GAAAACATTTACCTTCGGAA+TGG | + | chr5_4:48508857-48508876 | None:intergenic | 35.0% | |
| ATCCTAACCTTTACATATCC+GGG | + | chr5_4:48509068-48509087 | None:intergenic | 35.0% | |
| ATTGGTCGATGAACATCAAA+AGG | - | chr5_4:48509202-48509221 | Msa0855300:intron | 35.0% | |
| GTGAAGACAATAATGGTCAA+AGG | - | chr5_4:48509440-48509459 | Msa0855300:CDS | 35.0% | |
| ACAATCAGTCCCAATTTACA+TGG | - | chr5_4:48509463-48509482 | Msa0855300:intron | 35.0% | |
| AAGAGCTTGTGCAACATAAT+TGG | - | chr5_4:48509540-48509559 | Msa0855300:intron | 35.0% | |
| AACAACACACTCCCAAAAAT+AGG | + | chr5_4:48509687-48509706 | None:intergenic | 35.0% | |
| !!! | TATTTTTGGGAGTGTGTTGT+TGG | - | chr5_4:48509686-48509705 | Msa0855300:intron | 35.0% |
| AAAATTTGATCAAGCCTCGT+GGG | - | chr5_4:48509761-48509780 | Msa0855300:CDS | 35.0% | |
| TATCTCACGAGGATAAACAA+GGG | - | chr5_4:48509818-48509837 | Msa0855300:CDS | 35.0% | |
| !! | GAATAAGCTGATTTTTGCAC+CGG | - | chr5_4:48509879-48509898 | Msa0855300:CDS | 35.0% |
| !! | ATTTTTGCACCGGTCAATTT+AGG | - | chr5_4:48509889-48509908 | Msa0855300:CDS | 35.0% |
| !! | TTTTTGCACCGGTCAATTTA+GGG | - | chr5_4:48509890-48509909 | Msa0855300:CDS | 35.0% |
| ACTGATGGAATAAACCCTCA+TGG | - | chr5_4:48506857-48506876 | Msa0855300:intron | 40.0% | |
| ! | AATGGTGGAAGTAGTTCAAG+AGG | - | chr5_4:48506969-48506988 | Msa0855300:intron | 40.0% |
| TTTATGAATCACTCGCATGC+GGG | + | chr5_4:48507021-48507040 | None:intergenic | 40.0% | |
| CTTTATGAATCACTCGCATG+CGG | + | chr5_4:48507022-48507041 | None:intergenic | 40.0% | |
| ! | AAGTCGTGGAGATACTTTTG+AGG | - | chr5_4:48507046-48507065 | Msa0855300:CDS | 40.0% |
| !!! | CTTTGGCTTTCTTTTCCAAC+TGG | + | chr5_4:48507170-48507189 | None:intergenic | 40.0% |
| ATATTGGATGCATCGTTCGT+CGG | - | chr5_4:48507201-48507220 | Msa0855300:CDS | 40.0% | |
| GTGTAAAAATGGAAGCTGGA+AGG | - | chr5_4:48507423-48507442 | Msa0855300:CDS | 40.0% | |
| CACATAGACTCTTGTCAATG+TGG | + | chr5_4:48507468-48507487 | None:intergenic | 40.0% | |
| TGGGGATACATATCATTCGA+AGG | + | chr5_4:48507521-48507540 | None:intergenic | 40.0% | |
| TATGTATCCCCACATAGAAC+CGG | - | chr5_4:48507529-48507548 | Msa0855300:CDS | 40.0% | |
| ! | TGTAGAGCTTTGTGTAACTC+AGG | + | chr5_4:48507830-48507849 | None:intergenic | 40.0% |
| ! | CCCATCCGTGATTTTCTATA+TGG | + | chr5_4:48508007-48508026 | None:intergenic | 40.0% |
| AGAAAATCACGGATGGGATT+AGG | - | chr5_4:48508010-48508029 | Msa0855300:intron | 40.0% | |
| AGGTCGTCTCGAAGAAAATA+TGG | - | chr5_4:48508030-48508049 | Msa0855300:intron | 40.0% | |
| CAGAGAAGTCAAAGCAAAGA+AGG | + | chr5_4:48508129-48508148 | None:intergenic | 40.0% | |
| GGATGGAGTGATTGATAAAG+AGG | - | chr5_4:48508245-48508264 | Msa0855300:intron | 40.0% | |
| AGAGGAAGTTCAGAAAGTTG+CGG | - | chr5_4:48508263-48508282 | Msa0855300:intron | 40.0% | |
| TTGCTTGTCAATGTCACAGA+AGG | - | chr5_4:48508395-48508414 | Msa0855300:CDS | 40.0% | |
| TCTTTACCTGAAGATGAGAG+AGG | - | chr5_4:48508429-48508448 | Msa0855300:intron | 40.0% | |
| ! | TCTTTTCCTCTCTCATCTTC+AGG | + | chr5_4:48508438-48508457 | None:intergenic | 40.0% |
| GAAGAACATCATTACGACCA+AGG | + | chr5_4:48508461-48508480 | None:intergenic | 40.0% | |
| AAAATACTCTGGCCGTGTTA+GGG | - | chr5_4:48508503-48508522 | Msa0855300:intron | 40.0% | |
| CAAAACCATAACCCCTAACA+CGG | + | chr5_4:48508518-48508537 | None:intergenic | 40.0% | |
| ! | GTGTTAGGGGTTATGGTTTT+GGG | - | chr5_4:48508517-48508536 | Msa0855300:intron | 40.0% |
| ATTGCATTCACTTCATCGAC+GGG | + | chr5_4:48508578-48508597 | None:intergenic | 40.0% | |
| CATTGCATTCACTTCATCGA+CGG | + | chr5_4:48508579-48508598 | None:intergenic | 40.0% | |
| !! | TAGAGAGATTGGTGTTAGAG+AGG | - | chr5_4:48508630-48508649 | Msa0855300:intron | 40.0% |
| GATGGAGATACTAGAGAGAA+TGG | - | chr5_4:48508662-48508681 | Msa0855300:intron | 40.0% | |
| AGGCAACAACCAAAACTTGT+CGG | - | chr5_4:48508721-48508740 | Msa0855300:intron | 40.0% | |
| ! | TGACTTTCTCCGACAAGTTT+TGG | + | chr5_4:48508733-48508752 | None:intergenic | 40.0% |
| CAACTTGAACAGAATGATGG+TGG | - | chr5_4:48508751-48508770 | Msa0855300:intron | 40.0% | |
| CACAACAAGAAATTACCACC+CGG | - | chr5_4:48509047-48509066 | Msa0855300:CDS | 40.0% | |
| ATTACCACCCGGATATGTAA+AGG | - | chr5_4:48509058-48509077 | Msa0855300:CDS | 40.0% | |
| ! | GATTGATGTTGCTGTTGAGA+GGG | - | chr5_4:48509085-48509104 | Msa0855300:CDS | 40.0% |
| TTGCCTATACCTGTTGAAGA+AGG | - | chr5_4:48509116-48509135 | Msa0855300:CDS | 40.0% | |
| TCTCCTTCTTCAACAGGTAT+AGG | + | chr5_4:48509122-48509141 | None:intergenic | 40.0% | |
| AAGACATCTCCTTCTTCAAC+AGG | + | chr5_4:48509128-48509147 | None:intergenic | 40.0% | |
| ! | TTGACTGTTGGTGAAGCAAT+AGG | - | chr5_4:48509146-48509165 | Msa0855300:CDS | 40.0% |
| ! | TGACTGTTGGTGAAGCAATA+GGG | - | chr5_4:48509147-48509166 | Msa0855300:CDS | 40.0% |
| TGAAGCAATAGGGACATTTG+TGG | - | chr5_4:48509157-48509176 | Msa0855300:CDS | 40.0% | |
| ! | AACTGATTCAGCACTACGTT+GGG | + | chr5_4:48509357-48509376 | None:intergenic | 40.0% |
| !! | CTATTAAACAGAGAGGTACC+TGG | + | chr5_4:48509594-48509613 | None:intergenic | 40.0% |
| GAAAATTTGATCAAGCCTCG+TGG | - | chr5_4:48509760-48509779 | Msa0855300:CDS | 40.0% | |
| AACTTATTTACCAACCCACG+AGG | + | chr5_4:48509778-48509797 | None:intergenic | 40.0% | |
| TATCCTCGTGAGATAGATGT+GGG | + | chr5_4:48509813-48509832 | None:intergenic | 40.0% | |
| TTATCCTCGTGAGATAGATG+TGG | + | chr5_4:48509814-48509833 | None:intergenic | 40.0% | |
| CTATCTCACGAGGATAAACA+AGG | - | chr5_4:48509817-48509836 | Msa0855300:CDS | 40.0% | |
| GAATATGGAAGGGTTGCAGA+TGG | - | chr5_4:48506734-48506753 | Msa0855300:CDS | 45.0% | |
| ATCCTGCAGATTCTCCTCAA+TGG | - | chr5_4:48506768-48506787 | Msa0855300:CDS | 45.0% | |
| TCCTGCAGATTCTCCTCAAT+GGG | - | chr5_4:48506769-48506788 | Msa0855300:CDS | 45.0% | |
| CGTCTTGCATTGTCTACTGA+TGG | - | chr5_4:48506842-48506861 | Msa0855300:intron | 45.0% | |
| CAGGTTCAATGGAATGCTCT+AGG | - | chr5_4:48507140-48507159 | Msa0855300:CDS | 45.0% | |
| ! | AATGCTCTAGGTCAACCAGT+TGG | - | chr5_4:48507152-48507171 | Msa0855300:CDS | 45.0% |
| ! | TCGGCTGGTTCCAATTAGTA+TGG | - | chr5_4:48507220-48507239 | Msa0855300:CDS | 45.0% |
| AGTGAGACGTTGAGCTACAA+AGG | + | chr5_4:48507567-48507586 | None:intergenic | 45.0% | |
| ACGTCTCACTCCTGAATTTC+AGG | - | chr5_4:48507577-48507596 | Msa0855300:CDS | 45.0% | |
| CTTCAGTGCTGCAAATCACT+AGG | + | chr5_4:48507645-48507664 | None:intergenic | 45.0% | |
| CACTCCATCCTTACCAACAT+GGG | + | chr5_4:48508235-48508254 | None:intergenic | 45.0% | |
| TCACTCCATCCTTACCAACA+TGG | + | chr5_4:48508236-48508255 | None:intergenic | 45.0% | |
| GATGAGAGAGGAAAAGACCT+TGG | - | chr5_4:48508441-48508460 | Msa0855300:intron | 45.0% | |
| !! | CTAACACGGCCAGAGTATTT+TGG | + | chr5_4:48508504-48508523 | None:intergenic | 45.0% |
| CAAAATACTCTGGCCGTGTT+AGG | - | chr5_4:48508502-48508521 | Msa0855300:intron | 45.0% | |
| AAATACTCTGGCCGTGTTAG+GGG | - | chr5_4:48508504-48508523 | Msa0855300:intron | 45.0% | |
| ! | CGTGTTAGGGGTTATGGTTT+TGG | - | chr5_4:48508516-48508535 | Msa0855300:intron | 45.0% |
| TTGCATTCACTTCATCGACG+GGG | + | chr5_4:48508577-48508596 | None:intergenic | 45.0% | |
| TTAGAGAGGCAGACTCATGA+TGG | - | chr5_4:48508644-48508663 | Msa0855300:intron | 45.0% | |
| GTAGAAAGAGAGAGAGAGAG+AGG | - | chr5_4:48508701-48508720 | Msa0855300:intron | 45.0% | |
| !! | AACAGAATGATGGTGGAGAG+AGG | - | chr5_4:48508758-48508777 | Msa0855300:intron | 45.0% |
| AAGAGGGCTGCAAGAATCTT+TGG | + | chr5_4:48508824-48508843 | None:intergenic | 45.0% | |
| TGCCATGAGCAACCAAATGT+CGG | + | chr5_4:48508998-48509017 | None:intergenic | 45.0% | |
| CTAACCTTTACATATCCGGG+TGG | + | chr5_4:48509065-48509084 | None:intergenic | 45.0% | |
| CACCCGGATATGTAAAGGTT+AGG | - | chr5_4:48509063-48509082 | Msa0855300:CDS | 45.0% | |
| ! | GGATTGATGTTGCTGTTGAG+AGG | - | chr5_4:48509084-48509103 | Msa0855300:CDS | 45.0% |
| GAAGGAGATGTCTTGACTGT+TGG | - | chr5_4:48509134-48509153 | Msa0855300:CDS | 45.0% | |
| CAATAGGGACATTTGTGGCA+TGG | - | chr5_4:48509162-48509181 | Msa0855300:CDS | 45.0% | |
| ! | ACTGATTCAGCACTACGTTG+GGG | + | chr5_4:48509356-48509375 | None:intergenic | 45.0% |
| ! | CAACTGATTCAGCACTACGT+TGG | + | chr5_4:48509358-48509377 | None:intergenic | 45.0% |
| GAAAACTGTGAAGCCTGCTA+TGG | - | chr5_4:48509397-48509416 | Msa0855300:CDS | 45.0% | |
| TCAAGGAATGGTACCATAGC+AGG | + | chr5_4:48509413-48509432 | None:intergenic | 45.0% | |
| GGCATATACAGCTACAACAG+TGG | + | chr5_4:48509573-48509592 | None:intergenic | 45.0% | |
| CTGTTGTAGCTGTATATGCC+AGG | - | chr5_4:48509573-48509592 | Msa0855300:intron | 45.0% | |
| ATCCTCGTGAGATAGATGTG+GGG | + | chr5_4:48509812-48509831 | None:intergenic | 45.0% | |
| TCCCATTGAGGAGAATCTGC+AGG | + | chr5_4:48506773-48506792 | None:intergenic | 50.0% | |
| CAATGCTCCGGTTCTATGTG+GGG | + | chr5_4:48507539-48507558 | None:intergenic | 50.0% | |
| CCAATGCTCCGGTTCTATGT+GGG | + | chr5_4:48507540-48507559 | None:intergenic | 50.0% | |
| ! | CCACATAGAACCGGAGCATT+GGG | - | chr5_4:48507538-48507557 | Msa0855300:CDS | 50.0% |
| !! | ACAAAGGCATCCCAATGCTC+CGG | + | chr5_4:48507551-48507570 | None:intergenic | 50.0% |
| TGATACCACGTGCATCTGTG+TGG | - | chr5_4:48508202-48508221 | Msa0855300:intron | 50.0% | |
| GATTGCTGCCCATGTTGGTA+AGG | - | chr5_4:48508224-48508243 | Msa0855300:intron | 50.0% | |
| GAATGGCGTCAAGTGCAAGA+GGG | + | chr5_4:48508840-48508859 | None:intergenic | 50.0% | |
| ATCATCCCCATGCCGACATT+TGG | - | chr5_4:48508983-48509002 | Msa0855300:intron | 50.0% | |
| AGCAACCAAATGTCGGCATG+GGG | + | chr5_4:48508991-48509010 | None:intergenic | 50.0% | |
| GAGCAACCAAATGTCGGCAT+GGG | + | chr5_4:48508992-48509011 | None:intergenic | 50.0% | |
| TGAGCAACCAAATGTCGGCA+TGG | + | chr5_4:48508993-48509012 | None:intergenic | 50.0% | |
| TGCCGACATTTGGTTGCTCA+TGG | - | chr5_4:48508993-48509012 | Msa0855300:intron | 50.0% | |
| TTTGATCAAGCCTCGTGGGT+TGG | - | chr5_4:48509765-48509784 | Msa0855300:CDS | 50.0% | |
| ATCCCCACATCTATCTCACG+AGG | - | chr5_4:48509807-48509826 | Msa0855300:CDS | 50.0% | |
| CCCACATAGAACCGGAGCAT+TGG | - | chr5_4:48507537-48507556 | Msa0855300:CDS | 55.0% | |
| CCCAATGCTCCGGTTCTATG+TGG | + | chr5_4:48507541-48507560 | None:intergenic | 55.0% | |
| GCAATCCACACAGATGCACG+TGG | + | chr5_4:48508210-48508229 | None:intergenic | 55.0% | |
| ! | GTGTGGATTGCTGCCCATGT+TGG | - | chr5_4:48508219-48508238 | Msa0855300:intron | 55.0% |
| ! | GCTGCCCATGTTGGTAAGGA+TGG | - | chr5_4:48508228-48508247 | Msa0855300:intron | 55.0% |
| TCTGGCCGTGTTAGGGGTTA+TGG | - | chr5_4:48508510-48508529 | Msa0855300:intron | 55.0% | |
| TCGACGGGGATAGATTGTCG+TGG | + | chr5_4:48508563-48508582 | None:intergenic | 55.0% | |
| GGAATGGCGTCAAGTGCAAG+AGG | + | chr5_4:48508841-48508860 | None:intergenic | 55.0% | |
| TGCACTTGACGCCATTCCGA+AGG | - | chr5_4:48508843-48508862 | Msa0855300:intron | 55.0% | |
| TGGATGCATCGTTCGTCGGC+TGG | - | chr5_4:48507205-48507224 | Msa0855300:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 48506692 | 48509915 | 48506692 | ID=Msa0855300;Name=Msa0855300 |
| chr5_4 | mRNA | 48506692 | 48509915 | 48506692 | ID=Msa0855300-mRNA-1;Parent=Msa0855300;Name=Msa0855300-mRNA-1;_AED=0.27;_eAED=0.28;_QI=0|0|0|0.54|1|1|11|0|601 |
| chr5_4 | exon | 48509729 | 48509915 | 48509729 | ID=Msa0855300-mRNA-1:exon:15315;Parent=Msa0855300-mRNA-1 |
| chr5_4 | exon | 48509605 | 48509654 | 48509605 | ID=Msa0855300-mRNA-1:exon:15314;Parent=Msa0855300-mRNA-1 |
| chr5_4 | exon | 48509306 | 48509464 | 48509306 | ID=Msa0855300-mRNA-1:exon:15313;Parent=Msa0855300-mRNA-1 |
| chr5_4 | exon | 48509009 | 48509218 | 48509009 | ID=Msa0855300-mRNA-1:exon:15312;Parent=Msa0855300-mRNA-1 |
| chr5_4 | exon | 48508556 | 48508648 | 48508556 | ID=Msa0855300-mRNA-1:exon:15311;Parent=Msa0855300-mRNA-1 |
| chr5_4 | exon | 48508314 | 48508427 | 48508314 | ID=Msa0855300-mRNA-1:exon:15310;Parent=Msa0855300-mRNA-1 |
| chr5_4 | exon | 48508069 | 48508193 | 48508069 | ID=Msa0855300-mRNA-1:exon:15309;Parent=Msa0855300-mRNA-1 |
| chr5_4 | exon | 48507743 | 48507902 | 48507743 | ID=Msa0855300-mRNA-1:exon:15308;Parent=Msa0855300-mRNA-1 |
| chr5_4 | exon | 48507384 | 48507650 | 48507384 | ID=Msa0855300-mRNA-1:exon:15307;Parent=Msa0855300-mRNA-1 |
| chr5_4 | exon | 48507013 | 48507287 | 48507013 | ID=Msa0855300-mRNA-1:exon:15306;Parent=Msa0855300-mRNA-1 |
| chr5_4 | exon | 48506692 | 48506857 | 48506692 | ID=Msa0855300-mRNA-1:exon:15305;Parent=Msa0855300-mRNA-1 |
| chr5_4 | CDS | 48509729 | 48509915 | 48509729 | ID=Msa0855300-mRNA-1:cds;Parent=Msa0855300-mRNA-1 |
| chr5_4 | CDS | 48509605 | 48509654 | 48509605 | ID=Msa0855300-mRNA-1:cds;Parent=Msa0855300-mRNA-1 |
| chr5_4 | CDS | 48509306 | 48509464 | 48509306 | ID=Msa0855300-mRNA-1:cds;Parent=Msa0855300-mRNA-1 |
| chr5_4 | CDS | 48509009 | 48509218 | 48509009 | ID=Msa0855300-mRNA-1:cds;Parent=Msa0855300-mRNA-1 |
| chr5_4 | CDS | 48508556 | 48508648 | 48508556 | ID=Msa0855300-mRNA-1:cds;Parent=Msa0855300-mRNA-1 |
| chr5_4 | CDS | 48508314 | 48508427 | 48508314 | ID=Msa0855300-mRNA-1:cds;Parent=Msa0855300-mRNA-1 |
| chr5_4 | CDS | 48508069 | 48508193 | 48508069 | ID=Msa0855300-mRNA-1:cds;Parent=Msa0855300-mRNA-1 |
| chr5_4 | CDS | 48507743 | 48507902 | 48507743 | ID=Msa0855300-mRNA-1:cds;Parent=Msa0855300-mRNA-1 |
| chr5_4 | CDS | 48507384 | 48507650 | 48507384 | ID=Msa0855300-mRNA-1:cds;Parent=Msa0855300-mRNA-1 |
| chr5_4 | CDS | 48507013 | 48507287 | 48507013 | ID=Msa0855300-mRNA-1:cds;Parent=Msa0855300-mRNA-1 |
| chr5_4 | CDS | 48506692 | 48506857 | 48506692 | ID=Msa0855300-mRNA-1:cds;Parent=Msa0855300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
