AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0288420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0288420 MtrunA17_Chr2g0306301 99.097 554 5 0 1 554 1 554 0.0 1123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0288420 AT1G73930.1 72.870 575 137 5 1 557 1 574 0.0 867
Msa0288420 AT1G73930.2 72.870 575 137 5 1 557 1 574 0.0 867

Find 151 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTACTGGCAGAATTTC+TGG 0.120754 2_3:-33585869 Msa0288420:CDS
AAGATCTGATGAATGAATTT+AGG 0.150113 2_3:+33587004 None:intergenic
CGATCGATTTGATCGATAAT+AGG 0.179429 2_3:+33586936 None:intergenic
GGCATTGTAGTCCTGAAATA+TGG 0.221451 2_3:+33585554 None:intergenic
TTAACGAGTTGGGATTAATT+TGG 0.223290 2_3:+33586961 None:intergenic
TATTGCAGCTTTGGTTGTTA+TGG 0.225012 2_3:-33586198 Msa0288420:CDS
AGCGCAAGCCGGTTTGAATT+AGG 0.240350 2_3:+33585902 None:intergenic
GCTTTCCCACCGGTTATATT+AGG 0.243424 2_3:-33585995 Msa0288420:CDS
GATATTACGGAGACATTTCT+TGG 0.251374 2_3:-33585609 Msa0288420:CDS
TACACTTGTCACAAATTTCT+AGG 0.254485 2_3:-33587048 Msa0288420:five_prime_UTR
CGTAATAATGAATATTTATA+TGG 0.260164 2_3:-33586592 Msa0288420:CDS
GCTTAAAGTTTGGTCCATTC+AGG 0.274888 2_3:+33585272 None:intergenic
TTATGGGAGTTGTTGCTTAT+TGG 0.276275 2_3:-33586181 Msa0288420:CDS
ATTGCAGCTTTGGTTGTTAT+GGG 0.280035 2_3:-33586197 Msa0288420:CDS
GATCGATTTGATCGATAATA+GGG 0.282495 2_3:+33586937 None:intergenic
TGAATTTCTTGCTAGTTTAT+CGG 0.307037 2_3:-33585474 Msa0288420:CDS
ACAGCATTCAATAAACTTGT+AGG 0.322515 2_3:+33585797 None:intergenic
TGGGATGTGGGAAGCGGGTC+TGG 0.324239 2_3:+33587090 None:intergenic
CTGGCAGACCTGAAGGTCTT+GGG 0.331168 2_3:-33585850 Msa0288420:CDS
AGATCTGATGAATGAATTTA+GGG 0.339370 2_3:+33587005 None:intergenic
GGAGCTCACTACTAATTTCT+TGG 0.339757 2_3:-33585588 Msa0288420:CDS
TGAAACCACGGCTTAAAGTT+TGG 0.343463 2_3:+33585262 None:intergenic
TGTTGAAACCCAAGACCTTC+AGG 0.352800 2_3:+33585842 None:intergenic
AGCCATTTGGAGTACTTATT+CGG 0.352902 2_3:-33585726 Msa0288420:CDS
ACTCACAATCACTCAAGAAA+TGG 0.355141 2_3:-33586804 Msa0288420:CDS
GGGTCATGAATGGTAAAATA+AGG 0.357268 2_3:+33586055 None:intergenic
TGTTGCTAGTCTTGTAAGTT+TGG 0.358638 2_3:-33586110 Msa0288420:CDS
GTCGAAATTGTGGATTCTTT+CGG 0.360491 2_3:-33585142 Msa0288420:CDS
CTGTTTAAGATAGAAGTATC+TGG 0.363049 2_3:+33585692 None:intergenic
CTAACTGGCTTGACTTATAC+AGG 0.366933 2_3:-33585412 Msa0288420:intron
TAAAGCGAATGAAATCTAAC+TGG 0.368380 2_3:-33585427 Msa0288420:CDS
TGATGCTGCGAAACGGAATC+GGG 0.381831 2_3:+33586664 None:intergenic
TCTGGCAGACCTGAAGGTCT+TGG 0.382731 2_3:-33585851 Msa0288420:CDS
TAACATTCCACATATTGTTT+CGG 0.386089 2_3:-33585939 Msa0288420:CDS
GTGAAATGGGATGTGGGAAG+CGG 0.389630 2_3:+33587084 None:intergenic
AGGACTACAATGCCATTAGA+AGG 0.391508 2_3:-33585545 Msa0288420:CDS
AAATTACCTGTATTTCTTTG+AGG 0.391990 2_3:+33585101 None:intergenic
AAATGGCCACCACCTGTTCC+TGG 0.403866 2_3:-33586388 Msa0288420:CDS
AGACCTTTGTTACAGATTGT+AGG 0.405893 2_3:-33586469 Msa0288420:CDS
TTAAGCGCGGCGTTACCAAT+AGG 0.406852 2_3:+33586349 None:intergenic
GGAATTGGAGGCGGTGAAAT+GGG 0.408026 2_3:+33587071 None:intergenic
CAGATACTTCTATCTTAAAC+AGG 0.409088 2_3:-33585691 Msa0288420:CDS
TTCAACAACTTTCACTAAGA+AGG 0.410228 2_3:-33585826 Msa0288420:CDS
TTTGTGACAAGTGTAGGAAT+TGG 0.410703 2_3:+33587056 None:intergenic
AGAGAAGGAGGGTCTGTGTA+AGG 0.412181 2_3:+33585515 None:intergenic
GATCAATGATTATTATGCTT+TGG 0.412895 2_3:-33586906 Msa0288420:five_prime_UTR
CGCTTTAAAATGAACTTCCC+TGG 0.414291 2_3:+33585443 None:intergenic
ATAATAGGGTTTAACGAGTT+GGG 0.417249 2_3:+33586951 None:intergenic
AGGAATTGGAGGCGGTGAAA+TGG 0.422908 2_3:+33587070 None:intergenic
TTGATGCTGCGAAACGGAAT+CGG 0.423398 2_3:+33586663 None:intergenic
TTGTCACAAATTTCTAGGTC+TGG 0.423801 2_3:-33587043 Msa0288420:five_prime_UTR
ACCGGCTTGCGCTATCGAAT+AGG 0.434727 2_3:-33585892 Msa0288420:CDS
AGTTTATCGGCAAGAGGTCC+AGG 0.435919 2_3:-33585461 Msa0288420:CDS
GCCACCACCTGTTCCTGGTC+AGG 0.437078 2_3:-33586383 Msa0288420:CDS
GCATTGTAGTCCTGAAATAT+GGG 0.443353 2_3:+33585555 None:intergenic
TCGCTGGAAAGAACACCGTT+TGG 0.445911 2_3:+33586718 None:intergenic
AATTTCAAGCTCCTCTTCGC+TGG 0.446506 2_3:+33586702 None:intergenic
TAAACTAGCAAGAAATTCAT+TGG 0.449696 2_3:+33585478 None:intergenic
TGAAATGGGATGTGGGAAGC+GGG 0.451650 2_3:+33587085 None:intergenic
CCAAATGGCTTCCTTATGTT+CGG 0.452732 2_3:+33585739 None:intergenic
ACTTCTCCTCAAAGAAATAC+AGG 0.458435 2_3:-33585107 Msa0288420:CDS
TTGTCTAATGACCGAACATA+AGG 0.458782 2_3:-33585750 Msa0288420:CDS
AGTCAATCAGTCTGTCCTGC+AGG 0.458829 2_3:-33586266 Msa0288420:CDS
GATAATAGGGTTTAACGAGT+TGG 0.461819 2_3:+33586950 None:intergenic
ACCTGTTCCTGGTCAGGTGA+TGG 0.461868 2_3:-33586377 Msa0288420:CDS
CTCACAATCACTCAAGAAAT+GGG 0.462166 2_3:-33586803 Msa0288420:CDS
TTCGTCACACCTAATATAAC+CGG 0.462678 2_3:+33585986 None:intergenic
TCCATCACCTGACCAGGAAC+AGG 0.465881 2_3:+33586376 None:intergenic
GAAGAAACATAATCGTCAAC+AGG 0.466774 2_3:+33586298 None:intergenic
GAAAATGCAATCATGAATGC+TGG 0.469096 2_3:+33586633 None:intergenic
TTGTGAACAATGAGATATTA+CGG 0.476975 2_3:-33585622 Msa0288420:CDS
CCGAACATAAGGAAGCCATT+TGG 0.478859 2_3:-33585739 Msa0288420:CDS
GACATTGACTCCTCAACTCT+TGG 0.483624 2_3:+33585647 None:intergenic
TTAAACAGGCTGATAGATGC+TGG 0.483776 2_3:-33585677 Msa0288420:CDS
AAATTGCATAAAATCATTTG+AGG 0.485167 2_3:+33585065 None:intergenic
CTCATCAGGCGATTCCTGAA+TGG 0.485653 2_3:-33585286 Msa0288420:intron
AGTCCTGAAATATGGGGAAA+AGG 0.486514 2_3:+33585562 None:intergenic
CAGAAAATTTAGAAATAAGC+TGG 0.489776 2_3:+33585167 None:intergenic
TCGCAACATTGTGGAGGCGT+AGG 0.493974 2_3:+33586136 None:intergenic
CGCAACATTGTGGAGGCGTA+GGG 0.495642 2_3:+33586137 None:intergenic
GTCCTGAAATATGGGGAAAA+GGG 0.497391 2_3:+33585563 None:intergenic
TAAAATCATTTGAGGACCTC+AGG 0.498855 2_3:+33585073 None:intergenic
TAAGGAGAAGATCCTTCTAA+TGG 0.499183 2_3:+33585533 None:intergenic
TAGAAATTTGTGACAAGTGT+AGG 0.499828 2_3:+33587050 None:intergenic
ATTCCACATATTGTTTCGGT+TGG 0.500417 2_3:-33585935 Msa0288420:CDS
GCCCTCCTCCTAATTCAAAC+CGG 0.502204 2_3:-33585910 Msa0288420:CDS
GTGACAAGTGTAGGAATTGG+AGG 0.515132 2_3:+33587059 None:intergenic
AGAAATTCATTGGCATCAAA+CGG 0.516830 2_3:+33585488 None:intergenic
GAATGTTACGAAGCGCTTTG+AGG 0.516997 2_3:+33585954 None:intergenic
GGAGGCGGTGAAATGGGATG+TGG 0.524500 2_3:+33587077 None:intergenic
AAAGTTTGTTCAATATGAGC+AGG 0.524525 2_3:-33586870 Msa0288420:exon
ACCTATTCGATAGCGCAAGC+CGG 0.525887 2_3:+33585891 None:intergenic
AGCCGAATAAGTACTCCAAA+TGG 0.528512 2_3:+33585724 None:intergenic
TATGTGATGTGTTGTCAAGT+TGG 0.530037 2_3:-33587116 Msa0288420:five_prime_UTR
GAGGCGGTGAAATGGGATGT+GGG 0.530544 2_3:+33587078 None:intergenic
AGCCGGTTTGAATTAGGAGG+AGG 0.530978 2_3:+33585908 None:intergenic
CAGGTGATGGATCTTCCTAT+TGG 0.530995 2_3:-33586364 Msa0288420:CDS
AGAATTTCTGGCAGACCTGA+AGG 0.536351 2_3:-33585857 Msa0288420:CDS
TGCAATCATGAATGCTGGAT+CGG 0.541690 2_3:+33586638 None:intergenic
CTATCGAATAGGTCTTCTAC+TGG 0.549984 2_3:-33585881 Msa0288420:CDS
ACACATCACATAACATGCGT+TGG 0.552725 2_3:+33587127 None:intergenic
ATAGATTGTGGAGGCAAGCA+AGG 0.554043 2_3:-33585207 Msa0288420:CDS
GGACCTACAATCTGTAACAA+AGG 0.554431 2_3:+33586466 None:intergenic
GGAAGATCCATCACCTGACC+AGG 0.565720 2_3:+33586370 None:intergenic
ATTCGATTCGATCTCGAACA+AGG 0.566286 2_3:-33586763 Msa0288420:CDS
GTCGAAGAATGTTATCCAAA+CGG 0.571213 2_3:-33586733 Msa0288420:CDS
TGCAAGAGCAAGATAGATTG+TGG 0.571975 2_3:-33585219 Msa0288420:CDS
GTCAATCAGTCTGTCCTGCA+GGG 0.577208 2_3:-33586265 Msa0288420:CDS
CTTGCTAGTTTATCGGCAAG+AGG 0.578181 2_3:-33585467 Msa0288420:CDS
ACCTGACCAGGAACAGGTGG+TGG 0.583692 2_3:+33586382 None:intergenic
TGTTCGGTCATTAGACAAAG+AGG 0.584777 2_3:+33585755 None:intergenic
TCAACAGGCAAACTAAGAGC+AGG 0.584794 2_3:+33586313 None:intergenic
CTTCCAACCGAAACAATATG+TGG 0.584915 2_3:+33585932 None:intergenic
GCATCAAACGGAGGTAGAGA+AGG 0.586567 2_3:+33585500 None:intergenic
CGGTGTTCTTTCCAGCGAAG+AGG 0.587846 2_3:-33586713 Msa0288420:CDS
GCCGGTTTGAATTAGGAGGA+GGG 0.590161 2_3:+33585909 None:intergenic
TCAAACGGAGGTAGAGAAGG+AGG 0.591208 2_3:+33585503 None:intergenic
GTAGGGGCAATGATAAGCAT+TGG 0.594159 2_3:+33586154 None:intergenic
GCACGCTTTCTTTGAAACCA+CGG 0.596121 2_3:+33585250 None:intergenic
GCAAGCCGGTTTGAATTAGG+AGG 0.596974 2_3:+33585905 None:intergenic
TAAACAGGCTGATAGATGCT+GGG 0.597703 2_3:-33585676 Msa0288420:CDS
AGAAGGTGAAGCTTTCCCAC+CGG 0.598340 2_3:-33586005 Msa0288420:CDS
CTGCGAAACGGAATCGGGGA+AGG 0.603858 2_3:+33586669 None:intergenic
TACGCCTCCACAATGTTGCG+AGG 0.608069 2_3:-33586134 Msa0288420:CDS
GCTGTTAAGATGCGAAGAGA+CGG 0.616754 2_3:-33585779 Msa0288420:CDS
ACAGACAGCGACACGATGAG+AGG 0.618138 2_3:-33586558 Msa0288420:CDS
GATGCTGCGAAACGGAATCG+GGG 0.618876 2_3:+33586665 None:intergenic
GCAACAGCCTCGCAACATTG+TGG 0.622517 2_3:+33586127 None:intergenic
AAATTAAACTCAATTCAAGA+AGG 0.623603 2_3:-33586022 Msa0288420:CDS
GTCACACCTAATATAACCGG+TGG 0.624304 2_3:+33585989 None:intergenic
ATCACCTGACCAGGAACAGG+TGG 0.629437 2_3:+33586379 None:intergenic
CGGTAAGTTAACTTTAAGCG+CGG 0.636473 2_3:+33586336 None:intergenic
ATGGACCAAACTTTAAGCCG+TGG 0.638529 2_3:-33585267 Msa0288420:CDS
TGACGATTATGTTTCTTCCG+CGG 0.641459 2_3:-33586293 Msa0288420:CDS
CATTGTAGTCCTGAAATATG+GGG 0.650961 2_3:+33585556 None:intergenic
GCAACATTGTGGAGGCGTAG+GGG 0.651520 2_3:+33586138 None:intergenic
ACAGCCTCGCAACATTGTGG+AGG 0.653567 2_3:+33586130 None:intergenic
AGTGATTGTGAGTCAACACT+CGG 0.655647 2_3:+33586814 None:intergenic
GTTTATCGGCAAGAGGTCCA+GGG 0.656923 2_3:-33585460 Msa0288420:CDS
GATTAATTTGGATAACGACG+TGG 0.659244 2_3:+33586973 None:intergenic
AAATCAACACTACAAAGCAA+CGG 0.669746 2_3:+33586082 None:intergenic
TGGGTTGTCACCAAGAGTTG+AGG 0.674764 2_3:-33585657 Msa0288420:CDS
ACAGGCAAACTAAGAGCAGG+CGG 0.684727 2_3:+33586316 None:intergenic
CAAACGGAGGTAGAGAAGGA+GGG 0.691356 2_3:+33585504 None:intergenic
AATTCATTGGCATCAAACGG+AGG 0.691857 2_3:+33585491 None:intergenic
AGACTGATTGACTGTTGCCG+CGG 0.694669 2_3:+33586276 None:intergenic
TCACACCTAATATAACCGGT+GGG 0.715882 2_3:+33585990 None:intergenic
ACAAGTGTAGGAATTGGAGG+CGG 0.721852 2_3:+33587062 None:intergenic
AAGAGCAAGATAGATTGTGG+AGG 0.722112 2_3:-33585216 Msa0288420:CDS
CACGATGAGAGGCTTAAACG+CGG 0.743411 2_3:-33586547 Msa0288420:CDS
GATGAGAGGCTTAAACGCGG+TGG 0.745371 2_3:-33586544 Msa0288420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACTAATTAAATTTCTTAT+TGG - chr2_3:33586904-33586923 Msa0288420:five_prime_UTR 10.0%
!! TTACTAATTAAATTTCTTAT+TGG - chr2_3:33586904-33586923 Msa0288420:five_prime_UTR 10.0%
!! CGTAATAATGAATATTTATA+TGG - chr2_3:33585642-33585661 Msa0288420:CDS 15.0%
!!! AGTTTAATTTTGCAAAAATA+GGG + chr2_3:33586202-33586221 None:intergenic 15.0%
!! CGTAATAATGAATATTTATA+TGG - chr2_3:33585642-33585661 Msa0288420:CDS 15.0%
!!! AGTTTAATTTTGCAAAAATA+GGG + chr2_3:33586202-33586221 None:intergenic 15.0%
!!! GAGTTTAATTTTGCAAAAAT+AGG + chr2_3:33586203-33586222 None:intergenic 20.0%
!! AAATTAAACTCAATTCAAGA+AGG - chr2_3:33586212-33586231 Msa0288420:CDS 20.0%
!!! GAGTTTAATTTTGCAAAAAT+AGG + chr2_3:33586203-33586222 None:intergenic 20.0%
!! AAATTAAACTCAATTCAAGA+AGG - chr2_3:33586212-33586231 Msa0288420:CDS 20.0%
! AGATCTGATGAATGAATTTA+GGG + chr2_3:33585232-33585251 None:intergenic 25.0%
! AAGATCTGATGAATGAATTT+AGG + chr2_3:33585233-33585252 None:intergenic 25.0%
! GATCAATGATTATTATGCTT+TGG - chr2_3:33585328-33585347 Msa0288420:intron 25.0%
!!! TTTTCTTTTTTCGAATTTGC+AGG - chr2_3:33585619-33585638 Msa0288420:CDS 25.0%
! TAACATTCCACATATTGTTT+CGG - chr2_3:33586295-33586314 Msa0288420:CDS 25.0%
! TTGTGAACAATGAGATATTA+CGG - chr2_3:33586612-33586631 Msa0288420:CDS 25.0%
! TAAACTAGCAAGAAATTCAT+TGG + chr2_3:33586759-33586778 None:intergenic 25.0%
!! TGAATTTCTTGCTAGTTTAT+CGG - chr2_3:33586760-33586779 Msa0288420:CDS 25.0%
! CAGAAAATTTAGAAATAAGC+TGG + chr2_3:33587070-33587089 None:intergenic 25.0%
!!! GCTTATTTCTAAATTTTCTG+AGG - chr2_3:33587070-33587089 Msa0288420:five_prime_UTR 25.0%
! AAATTACCTGTATTTCTTTG+AGG + chr2_3:33587136-33587155 None:intergenic 25.0%
! AGATCTGATGAATGAATTTA+GGG + chr2_3:33585232-33585251 None:intergenic 25.0%
! AAGATCTGATGAATGAATTT+AGG + chr2_3:33585233-33585252 None:intergenic 25.0%
! GATCAATGATTATTATGCTT+TGG - chr2_3:33585328-33585347 Msa0288420:intron 25.0%
!!! TTTTCTTTTTTCGAATTTGC+AGG - chr2_3:33585619-33585638 Msa0288420:CDS 25.0%
! TAACATTCCACATATTGTTT+CGG - chr2_3:33586295-33586314 Msa0288420:CDS 25.0%
! TTGTGAACAATGAGATATTA+CGG - chr2_3:33586612-33586631 Msa0288420:CDS 25.0%
! TAAACTAGCAAGAAATTCAT+TGG + chr2_3:33586759-33586778 None:intergenic 25.0%
!! TGAATTTCTTGCTAGTTTAT+CGG - chr2_3:33586760-33586779 Msa0288420:CDS 25.0%
! CAGAAAATTTAGAAATAAGC+TGG + chr2_3:33587070-33587089 None:intergenic 25.0%
!!! GCTTATTTCTAAATTTTCTG+AGG - chr2_3:33587070-33587089 Msa0288420:five_prime_UTR 25.0%
! AAATTACCTGTATTTCTTTG+AGG + chr2_3:33587136-33587155 None:intergenic 25.0%
TAGAAATTTGTGACAAGTGT+AGG + chr2_3:33585187-33585206 None:intergenic 30.0%
TACACTTGTCACAAATTTCT+AGG - chr2_3:33585186-33585205 Msa0288420:CDS 30.0%
! TTAACGAGTTGGGATTAATT+TGG + chr2_3:33585276-33585295 None:intergenic 30.0%
ATAATAGGGTTTAACGAGTT+GGG + chr2_3:33585286-33585305 None:intergenic 30.0%
!! GATCGATTTGATCGATAATA+GGG + chr2_3:33585300-33585319 None:intergenic 30.0%
! AAAGTTTGTTCAATATGAGC+AGG - chr2_3:33585364-33585383 Msa0288420:intron 30.0%
GGTCTAAAAACACTAGAATA+AGG + chr2_3:33585750-33585769 None:intergenic 30.0%
TTACCAATGTCGAAAAACAA+AGG + chr2_3:33585792-33585811 None:intergenic 30.0%
!!! TTGCTGCTTTTGTTTCAAAA+TGG - chr2_3:33585829-33585848 Msa0288420:CDS 30.0%
AAATCAACACTACAAAGCAA+CGG + chr2_3:33586155-33586174 None:intergenic 30.0%
!!! TGCTTTGTAGTGTTGATTTT+CGG - chr2_3:33586156-33586175 Msa0288420:CDS 30.0%
TTCAACAACTTTCACTAAGA+AGG - chr2_3:33586408-33586427 Msa0288420:CDS 30.0%
ACAGCATTCAATAAACTTGT+AGG + chr2_3:33586440-33586459 None:intergenic 30.0%
!! CTGTTTAAGATAGAAGTATC+TGG + chr2_3:33586545-33586564 None:intergenic 30.0%
CAGATACTTCTATCTTAAAC+AGG - chr2_3:33586543-33586562 Msa0288420:CDS 30.0%
AGAAATTCATTGGCATCAAA+CGG + chr2_3:33586749-33586768 None:intergenic 30.0%
TAAAGCGAATGAAATCTAAC+TGG - chr2_3:33586807-33586826 Msa0288420:CDS 30.0%
TAGAAATTTGTGACAAGTGT+AGG + chr2_3:33585187-33585206 None:intergenic 30.0%
TACACTTGTCACAAATTTCT+AGG - chr2_3:33585186-33585205 Msa0288420:CDS 30.0%
! TTAACGAGTTGGGATTAATT+TGG + chr2_3:33585276-33585295 None:intergenic 30.0%
ATAATAGGGTTTAACGAGTT+GGG + chr2_3:33585286-33585305 None:intergenic 30.0%
!! GATCGATTTGATCGATAATA+GGG + chr2_3:33585300-33585319 None:intergenic 30.0%
! AAAGTTTGTTCAATATGAGC+AGG - chr2_3:33585364-33585383 Msa0288420:intron 30.0%
GGTCTAAAAACACTAGAATA+AGG + chr2_3:33585750-33585769 None:intergenic 30.0%
TTACCAATGTCGAAAAACAA+AGG + chr2_3:33585792-33585811 None:intergenic 30.0%
!!! TTGCTGCTTTTGTTTCAAAA+TGG - chr2_3:33585829-33585848 Msa0288420:CDS 30.0%
AAATCAACACTACAAAGCAA+CGG + chr2_3:33586155-33586174 None:intergenic 30.0%
!!! TGCTTTGTAGTGTTGATTTT+CGG - chr2_3:33586156-33586175 Msa0288420:CDS 30.0%
TTCAACAACTTTCACTAAGA+AGG - chr2_3:33586408-33586427 Msa0288420:CDS 30.0%
ACAGCATTCAATAAACTTGT+AGG + chr2_3:33586440-33586459 None:intergenic 30.0%
!! CTGTTTAAGATAGAAGTATC+TGG + chr2_3:33586545-33586564 None:intergenic 30.0%
CAGATACTTCTATCTTAAAC+AGG - chr2_3:33586543-33586562 Msa0288420:CDS 30.0%
AGAAATTCATTGGCATCAAA+CGG + chr2_3:33586749-33586768 None:intergenic 30.0%
TAAAGCGAATGAAATCTAAC+TGG - chr2_3:33586807-33586826 Msa0288420:CDS 30.0%
TATGTGATGTGTTGTCAAGT+TGG - chr2_3:33585118-33585137 Msa0288420:CDS 35.0%
TTTGTGACAAGTGTAGGAAT+TGG + chr2_3:33585181-33585200 None:intergenic 35.0%
! TTGTCACAAATTTCTAGGTC+TGG - chr2_3:33585191-33585210 Msa0288420:CDS 35.0%
! GATTAATTTGGATAACGACG+TGG + chr2_3:33585264-33585283 None:intergenic 35.0%
GATAATAGGGTTTAACGAGT+TGG + chr2_3:33585287-33585306 None:intergenic 35.0%
!! CGATCGATTTGATCGATAAT+AGG + chr2_3:33585301-33585320 None:intergenic 35.0%
! TCCTTCGTTTTCACTGAAAA+CGG - chr2_3:33585389-33585408 Msa0288420:intron 35.0%
ACTCACAATCACTCAAGAAA+TGG - chr2_3:33585430-33585449 Msa0288420:CDS 35.0%
CTCACAATCACTCAAGAAAT+GGG - chr2_3:33585431-33585450 Msa0288420:CDS 35.0%
GTCGAAGAATGTTATCCAAA+CGG - chr2_3:33585501-33585520 Msa0288420:CDS 35.0%
GAAAATGCAATCATGAATGC+TGG + chr2_3:33585604-33585623 None:intergenic 35.0%
AGACCTTTGTTACAGATTGT+AGG - chr2_3:33585765-33585784 Msa0288420:CDS 35.0%
GAAGAAACATAATCGTCAAC+AGG + chr2_3:33585939-33585958 None:intergenic 35.0%
!! TTTCATGACTCGGATCTTTT+TGG - chr2_3:33585996-33586015 Msa0288420:CDS 35.0%
! TATTGCAGCTTTGGTTGTTA+TGG - chr2_3:33586036-33586055 Msa0288420:CDS 35.0%
! ATTGCAGCTTTGGTTGTTAT+GGG - chr2_3:33586037-33586056 Msa0288420:CDS 35.0%
! TTATGGGAGTTGTTGCTTAT+TGG - chr2_3:33586053-33586072 Msa0288420:CDS 35.0%
!! TGTTGCTAGTCTTGTAAGTT+TGG - chr2_3:33586124-33586143 Msa0288420:CDS 35.0%
GGGTCATGAATGGTAAAATA+AGG + chr2_3:33586182-33586201 None:intergenic 35.0%
TGCAAAAATAGGGTCATGAA+TGG + chr2_3:33586192-33586211 None:intergenic 35.0%
TTCGTCACACCTAATATAAC+CGG + chr2_3:33586251-33586270 None:intergenic 35.0%
ATTCCACATATTGTTTCGGT+TGG - chr2_3:33586299-33586318 Msa0288420:CDS 35.0%
TTGTCTAATGACCGAACATA+AGG - chr2_3:33586484-33586503 Msa0288420:CDS 35.0%
! AGCCATTTGGAGTACTTATT+CGG - chr2_3:33586508-33586527 Msa0288420:CDS 35.0%
GATATTACGGAGACATTTCT+TGG - chr2_3:33586625-33586644 Msa0288420:CDS 35.0%
CATTGTAGTCCTGAAATATG+GGG + chr2_3:33586681-33586700 None:intergenic 35.0%
GCATTGTAGTCCTGAAATAT+GGG + chr2_3:33586682-33586701 None:intergenic 35.0%
TAAGGAGAAGATCCTTCTAA+TGG + chr2_3:33586704-33586723 None:intergenic 35.0%
!!! ATTTTCTGAGGTCGAAATTG+TGG - chr2_3:33587082-33587101 Msa0288420:five_prime_UTR 35.0%
GTCGAAATTGTGGATTCTTT+CGG - chr2_3:33587092-33587111 Msa0288420:five_prime_UTR 35.0%
ACTTCTCCTCAAAGAAATAC+AGG - chr2_3:33587127-33587146 Msa0288420:five_prime_UTR 35.0%
TATGTGATGTGTTGTCAAGT+TGG - chr2_3:33585118-33585137 Msa0288420:CDS 35.0%
TTTGTGACAAGTGTAGGAAT+TGG + chr2_3:33585181-33585200 None:intergenic 35.0%
! TTGTCACAAATTTCTAGGTC+TGG - chr2_3:33585191-33585210 Msa0288420:CDS 35.0%
! GATTAATTTGGATAACGACG+TGG + chr2_3:33585264-33585283 None:intergenic 35.0%
GATAATAGGGTTTAACGAGT+TGG + chr2_3:33585287-33585306 None:intergenic 35.0%
!! CGATCGATTTGATCGATAAT+AGG + chr2_3:33585301-33585320 None:intergenic 35.0%
! TCCTTCGTTTTCACTGAAAA+CGG - chr2_3:33585389-33585408 Msa0288420:intron 35.0%
ACTCACAATCACTCAAGAAA+TGG - chr2_3:33585430-33585449 Msa0288420:CDS 35.0%
CTCACAATCACTCAAGAAAT+GGG - chr2_3:33585431-33585450 Msa0288420:CDS 35.0%
GTCGAAGAATGTTATCCAAA+CGG - chr2_3:33585501-33585520 Msa0288420:CDS 35.0%
GAAAATGCAATCATGAATGC+TGG + chr2_3:33585604-33585623 None:intergenic 35.0%
AGACCTTTGTTACAGATTGT+AGG - chr2_3:33585765-33585784 Msa0288420:CDS 35.0%
GAAGAAACATAATCGTCAAC+AGG + chr2_3:33585939-33585958 None:intergenic 35.0%
!! TTTCATGACTCGGATCTTTT+TGG - chr2_3:33585996-33586015 Msa0288420:CDS 35.0%
! TATTGCAGCTTTGGTTGTTA+TGG - chr2_3:33586036-33586055 Msa0288420:CDS 35.0%
! ATTGCAGCTTTGGTTGTTAT+GGG - chr2_3:33586037-33586056 Msa0288420:CDS 35.0%
! TTATGGGAGTTGTTGCTTAT+TGG - chr2_3:33586053-33586072 Msa0288420:CDS 35.0%
!! TGTTGCTAGTCTTGTAAGTT+TGG - chr2_3:33586124-33586143 Msa0288420:CDS 35.0%
GGGTCATGAATGGTAAAATA+AGG + chr2_3:33586182-33586201 None:intergenic 35.0%
TGCAAAAATAGGGTCATGAA+TGG + chr2_3:33586192-33586211 None:intergenic 35.0%
TTCGTCACACCTAATATAAC+CGG + chr2_3:33586251-33586270 None:intergenic 35.0%
ATTCCACATATTGTTTCGGT+TGG - chr2_3:33586299-33586318 Msa0288420:CDS 35.0%
TTGTCTAATGACCGAACATA+AGG - chr2_3:33586484-33586503 Msa0288420:CDS 35.0%
! AGCCATTTGGAGTACTTATT+CGG - chr2_3:33586508-33586527 Msa0288420:CDS 35.0%
GATATTACGGAGACATTTCT+TGG - chr2_3:33586625-33586644 Msa0288420:CDS 35.0%
CATTGTAGTCCTGAAATATG+GGG + chr2_3:33586681-33586700 None:intergenic 35.0%
GCATTGTAGTCCTGAAATAT+GGG + chr2_3:33586682-33586701 None:intergenic 35.0%
TAAGGAGAAGATCCTTCTAA+TGG + chr2_3:33586704-33586723 None:intergenic 35.0%
!!! ATTTTCTGAGGTCGAAATTG+TGG - chr2_3:33587082-33587101 Msa0288420:five_prime_UTR 35.0%
GTCGAAATTGTGGATTCTTT+CGG - chr2_3:33587092-33587111 Msa0288420:five_prime_UTR 35.0%
ACTTCTCCTCAAAGAAATAC+AGG - chr2_3:33587127-33587146 Msa0288420:five_prime_UTR 35.0%
ACACATCACATAACATGCGT+TGG + chr2_3:33585110-33585129 None:intergenic 40.0%
! TCCGTTTTCAGTGAAAACGA+AGG + chr2_3:33585393-33585412 None:intergenic 40.0%
AGTGATTGTGAGTCAACACT+CGG + chr2_3:33585423-33585442 None:intergenic 40.0%
! ATTCGATTCGATCTCGAACA+AGG - chr2_3:33585471-33585490 Msa0288420:CDS 40.0%
TGCAATCATGAATGCTGGAT+CGG + chr2_3:33585599-33585618 None:intergenic 40.0%
GGACCTACAATCTGTAACAA+AGG + chr2_3:33585771-33585790 None:intergenic 40.0%
!!! GGTCCTTTGTTTTTCGACAT+TGG - chr2_3:33585786-33585805 Msa0288420:CDS 40.0%
CGGTAAGTTAACTTTAAGCG+CGG + chr2_3:33585901-33585920 None:intergenic 40.0%
TGACGATTATGTTTCTTCCG+CGG - chr2_3:33585941-33585960 Msa0288420:CDS 40.0%
! GATCTTTTTGGATCGTTTCG+TGG - chr2_3:33586008-33586027 Msa0288420:CDS 40.0%
! GTGGACTTTTATTGCAGCTT+TGG - chr2_3:33586027-33586046 Msa0288420:CDS 40.0%
TCACACCTAATATAACCGGT+GGG + chr2_3:33586247-33586266 None:intergenic 40.0%
CTTCCAACCGAAACAATATG+TGG + chr2_3:33586305-33586324 None:intergenic 40.0%
CTATCGAATAGGTCTTCTAC+TGG - chr2_3:33586353-33586372 Msa0288420:CDS 40.0%
TCTTCTACTGGCAGAATTTC+TGG - chr2_3:33586365-33586384 Msa0288420:CDS 40.0%
TGTTCGGTCATTAGACAAAG+AGG + chr2_3:33586482-33586501 None:intergenic 40.0%
CCAAATGGCTTCCTTATGTT+CGG + chr2_3:33586498-33586517 None:intergenic 40.0%
AGCCGAATAAGTACTCCAAA+TGG + chr2_3:33586513-33586532 None:intergenic 40.0%
TTAAACAGGCTGATAGATGC+TGG - chr2_3:33586557-33586576 Msa0288420:CDS 40.0%
TAAACAGGCTGATAGATGCT+GGG - chr2_3:33586558-33586577 Msa0288420:CDS 40.0%
GGAGCTCACTACTAATTTCT+TGG - chr2_3:33586646-33586665 Msa0288420:CDS 40.0%
GTCCTGAAATATGGGGAAAA+GGG + chr2_3:33586674-33586693 None:intergenic 40.0%
AGTCCTGAAATATGGGGAAA+AGG + chr2_3:33586675-33586694 None:intergenic 40.0%
GGCATTGTAGTCCTGAAATA+TGG + chr2_3:33586683-33586702 None:intergenic 40.0%
AGGACTACAATGCCATTAGA+AGG - chr2_3:33586689-33586708 Msa0288420:CDS 40.0%
AATTCATTGGCATCAAACGG+AGG + chr2_3:33586746-33586765 None:intergenic 40.0%
!! CGCTTTAAAATGAACTTCCC+TGG + chr2_3:33586794-33586813 None:intergenic 40.0%
!! CTAACTGGCTTGACTTATAC+AGG - chr2_3:33586822-33586841 Msa0288420:CDS 40.0%
TTTCGTTGAATGCTCTCATC+AGG - chr2_3:33586934-33586953 Msa0288420:five_prime_UTR 40.0%
GCTTAAAGTTTGGTCCATTC+AGG + chr2_3:33586965-33586984 None:intergenic 40.0%
TGAAACCACGGCTTAAAGTT+TGG + chr2_3:33586975-33586994 None:intergenic 40.0%
TGCAAGAGCAAGATAGATTG+TGG - chr2_3:33587015-33587034 Msa0288420:five_prime_UTR 40.0%
AAGAGCAAGATAGATTGTGG+AGG - chr2_3:33587018-33587037 Msa0288420:five_prime_UTR 40.0%
! ACAGGTAATTTTCTCTCCTG+AGG - chr2_3:33587145-33587164 Msa0288420:five_prime_UTR 40.0%
ACACATCACATAACATGCGT+TGG + chr2_3:33585110-33585129 None:intergenic 40.0%
! TCCGTTTTCAGTGAAAACGA+AGG + chr2_3:33585393-33585412 None:intergenic 40.0%
AGTGATTGTGAGTCAACACT+CGG + chr2_3:33585423-33585442 None:intergenic 40.0%
! ATTCGATTCGATCTCGAACA+AGG - chr2_3:33585471-33585490 Msa0288420:CDS 40.0%
TGCAATCATGAATGCTGGAT+CGG + chr2_3:33585599-33585618 None:intergenic 40.0%
GGACCTACAATCTGTAACAA+AGG + chr2_3:33585771-33585790 None:intergenic 40.0%
!!! GGTCCTTTGTTTTTCGACAT+TGG - chr2_3:33585786-33585805 Msa0288420:CDS 40.0%
CGGTAAGTTAACTTTAAGCG+CGG + chr2_3:33585901-33585920 None:intergenic 40.0%
TGACGATTATGTTTCTTCCG+CGG - chr2_3:33585941-33585960 Msa0288420:CDS 40.0%
! GATCTTTTTGGATCGTTTCG+TGG - chr2_3:33586008-33586027 Msa0288420:CDS 40.0%
! GTGGACTTTTATTGCAGCTT+TGG - chr2_3:33586027-33586046 Msa0288420:CDS 40.0%
TCACACCTAATATAACCGGT+GGG + chr2_3:33586247-33586266 None:intergenic 40.0%
CTTCCAACCGAAACAATATG+TGG + chr2_3:33586305-33586324 None:intergenic 40.0%
CTATCGAATAGGTCTTCTAC+TGG - chr2_3:33586353-33586372 Msa0288420:CDS 40.0%
TCTTCTACTGGCAGAATTTC+TGG - chr2_3:33586365-33586384 Msa0288420:CDS 40.0%
TGTTCGGTCATTAGACAAAG+AGG + chr2_3:33586482-33586501 None:intergenic 40.0%
CCAAATGGCTTCCTTATGTT+CGG + chr2_3:33586498-33586517 None:intergenic 40.0%
AGCCGAATAAGTACTCCAAA+TGG + chr2_3:33586513-33586532 None:intergenic 40.0%
TTAAACAGGCTGATAGATGC+TGG - chr2_3:33586557-33586576 Msa0288420:CDS 40.0%
TAAACAGGCTGATAGATGCT+GGG - chr2_3:33586558-33586577 Msa0288420:CDS 40.0%
GGAGCTCACTACTAATTTCT+TGG - chr2_3:33586646-33586665 Msa0288420:CDS 40.0%
GTCCTGAAATATGGGGAAAA+GGG + chr2_3:33586674-33586693 None:intergenic 40.0%
AGTCCTGAAATATGGGGAAA+AGG + chr2_3:33586675-33586694 None:intergenic 40.0%
GGCATTGTAGTCCTGAAATA+TGG + chr2_3:33586683-33586702 None:intergenic 40.0%
AGGACTACAATGCCATTAGA+AGG - chr2_3:33586689-33586708 Msa0288420:CDS 40.0%
AATTCATTGGCATCAAACGG+AGG + chr2_3:33586746-33586765 None:intergenic 40.0%
!! CGCTTTAAAATGAACTTCCC+TGG + chr2_3:33586794-33586813 None:intergenic 40.0%
!! CTAACTGGCTTGACTTATAC+AGG - chr2_3:33586822-33586841 Msa0288420:CDS 40.0%
TTTCGTTGAATGCTCTCATC+AGG - chr2_3:33586934-33586953 Msa0288420:five_prime_UTR 40.0%
GCTTAAAGTTTGGTCCATTC+AGG + chr2_3:33586965-33586984 None:intergenic 40.0%
TGAAACCACGGCTTAAAGTT+TGG + chr2_3:33586975-33586994 None:intergenic 40.0%
TGCAAGAGCAAGATAGATTG+TGG - chr2_3:33587015-33587034 Msa0288420:five_prime_UTR 40.0%
AAGAGCAAGATAGATTGTGG+AGG - chr2_3:33587018-33587037 Msa0288420:five_prime_UTR 40.0%
! ACAGGTAATTTTCTCTCCTG+AGG - chr2_3:33587145-33587164 Msa0288420:five_prime_UTR 40.0%
ACAAGTGTAGGAATTGGAGG+CGG + chr2_3:33585175-33585194 None:intergenic 45.0%
GTGACAAGTGTAGGAATTGG+AGG + chr2_3:33585178-33585197 None:intergenic 45.0%
AATTTCAAGCTCCTCTTCGC+TGG + chr2_3:33585535-33585554 None:intergenic 45.0%
TTGATGCTGCGAAACGGAAT+CGG + chr2_3:33585574-33585593 None:intergenic 45.0%
!! TCGGTTTTGATGCTGCGAAA+CGG + chr2_3:33585580-33585599 None:intergenic 45.0%
!! CAGGTGATGGATCTTCCTAT+TGG - chr2_3:33585870-33585889 Msa0288420:CDS 45.0%
TCAACAGGCAAACTAAGAGC+AGG + chr2_3:33585924-33585943 None:intergenic 45.0%
AGTCATGAAAAAGACCCTGC+AGG + chr2_3:33585986-33586005 None:intergenic 45.0%
!! GCAGGGTCTTTTTCATGACT+CGG - chr2_3:33585986-33586005 Msa0288420:CDS 45.0%
GTAGGGGCAATGATAAGCAT+TGG + chr2_3:33586083-33586102 None:intergenic 45.0%
! GCTTTCCCACCGGTTATATT+AGG - chr2_3:33586239-33586258 Msa0288420:CDS 45.0%
GTCACACCTAATATAACCGG+TGG + chr2_3:33586248-33586267 None:intergenic 45.0%
! GAATGTTACGAAGCGCTTTG+AGG + chr2_3:33586283-33586302 None:intergenic 45.0%
!! AGAATTTCTGGCAGACCTGA+AGG - chr2_3:33586377-33586396 Msa0288420:CDS 45.0%
TGTTGAAACCCAAGACCTTC+AGG + chr2_3:33586395-33586414 None:intergenic 45.0%
GCTGTTAAGATGCGAAGAGA+CGG - chr2_3:33586455-33586474 Msa0288420:CDS 45.0%
CCGAACATAAGGAAGCCATT+TGG - chr2_3:33586495-33586514 Msa0288420:CDS 45.0%
!! GACATTGACTCCTCAACTCT+TGG + chr2_3:33586590-33586609 None:intergenic 45.0%
! CTTGCTAGTTTATCGGCAAG+AGG - chr2_3:33586767-33586786 Msa0288420:CDS 45.0%
ATGGACCAAACTTTAAGCCG+TGG - chr2_3:33586967-33586986 Msa0288420:five_prime_UTR 45.0%
!! GCACGCTTTCTTTGAAACCA+CGG + chr2_3:33586987-33587006 None:intergenic 45.0%
ATAGATTGTGGAGGCAAGCA+AGG - chr2_3:33587027-33587046 Msa0288420:five_prime_UTR 45.0%
ACAAGTGTAGGAATTGGAGG+CGG + chr2_3:33585175-33585194 None:intergenic 45.0%
GTGACAAGTGTAGGAATTGG+AGG + chr2_3:33585178-33585197 None:intergenic 45.0%
AATTTCAAGCTCCTCTTCGC+TGG + chr2_3:33585535-33585554 None:intergenic 45.0%
TTGATGCTGCGAAACGGAAT+CGG + chr2_3:33585574-33585593 None:intergenic 45.0%
!! TCGGTTTTGATGCTGCGAAA+CGG + chr2_3:33585580-33585599 None:intergenic 45.0%
!! CAGGTGATGGATCTTCCTAT+TGG - chr2_3:33585870-33585889 Msa0288420:CDS 45.0%
TCAACAGGCAAACTAAGAGC+AGG + chr2_3:33585924-33585943 None:intergenic 45.0%
AGTCATGAAAAAGACCCTGC+AGG + chr2_3:33585986-33586005 None:intergenic 45.0%
!! GCAGGGTCTTTTTCATGACT+CGG - chr2_3:33585986-33586005 Msa0288420:CDS 45.0%
GTAGGGGCAATGATAAGCAT+TGG + chr2_3:33586083-33586102 None:intergenic 45.0%
! GCTTTCCCACCGGTTATATT+AGG - chr2_3:33586239-33586258 Msa0288420:CDS 45.0%
GTCACACCTAATATAACCGG+TGG + chr2_3:33586248-33586267 None:intergenic 45.0%
! GAATGTTACGAAGCGCTTTG+AGG + chr2_3:33586283-33586302 None:intergenic 45.0%
!! AGAATTTCTGGCAGACCTGA+AGG - chr2_3:33586377-33586396 Msa0288420:CDS 45.0%
TGTTGAAACCCAAGACCTTC+AGG + chr2_3:33586395-33586414 None:intergenic 45.0%
GCTGTTAAGATGCGAAGAGA+CGG - chr2_3:33586455-33586474 Msa0288420:CDS 45.0%
CCGAACATAAGGAAGCCATT+TGG - chr2_3:33586495-33586514 Msa0288420:CDS 45.0%
!! GACATTGACTCCTCAACTCT+TGG + chr2_3:33586590-33586609 None:intergenic 45.0%
! CTTGCTAGTTTATCGGCAAG+AGG - chr2_3:33586767-33586786 Msa0288420:CDS 45.0%
ATGGACCAAACTTTAAGCCG+TGG - chr2_3:33586967-33586986 Msa0288420:five_prime_UTR 45.0%
!! GCACGCTTTCTTTGAAACCA+CGG + chr2_3:33586987-33587006 None:intergenic 45.0%
ATAGATTGTGGAGGCAAGCA+AGG - chr2_3:33587027-33587046 Msa0288420:five_prime_UTR 45.0%
TGAAATGGGATGTGGGAAGC+GGG + chr2_3:33585152-33585171 None:intergenic 50.0%
GTGAAATGGGATGTGGGAAG+CGG + chr2_3:33585153-33585172 None:intergenic 50.0%
GGAATTGGAGGCGGTGAAAT+GGG + chr2_3:33585166-33585185 None:intergenic 50.0%
AGGAATTGGAGGCGGTGAAA+TGG + chr2_3:33585167-33585186 None:intergenic 50.0%
TCGCTGGAAAGAACACCGTT+TGG + chr2_3:33585519-33585538 None:intergenic 50.0%
TGATGCTGCGAAACGGAATC+GGG + chr2_3:33585573-33585592 None:intergenic 50.0%
CACGATGAGAGGCTTAAACG+CGG - chr2_3:33585687-33585706 Msa0288420:CDS 50.0%
TTAAGCGCGGCGTTACCAAT+AGG + chr2_3:33585888-33585907 None:intergenic 50.0%
ACAGGCAAACTAAGAGCAGG+CGG + chr2_3:33585921-33585940 None:intergenic 50.0%
AGACTGATTGACTGTTGCCG+CGG + chr2_3:33585961-33585980 None:intergenic 50.0%
AGTCAATCAGTCTGTCCTGC+AGG - chr2_3:33585968-33585987 Msa0288420:CDS 50.0%
GTCAATCAGTCTGTCCTGCA+GGG - chr2_3:33585969-33585988 Msa0288420:CDS 50.0%
AGAAGGTGAAGCTTTCCCAC+CGG - chr2_3:33586229-33586248 Msa0288420:CDS 50.0%
GCCCTCCTCCTAATTCAAAC+CGG - chr2_3:33586324-33586343 Msa0288420:CDS 50.0%
!! GCCGGTTTGAATTAGGAGGA+GGG + chr2_3:33586328-33586347 None:intergenic 50.0%
!! AGCCGGTTTGAATTAGGAGG+AGG + chr2_3:33586329-33586348 None:intergenic 50.0%
!! GCAAGCCGGTTTGAATTAGG+AGG + chr2_3:33586332-33586351 None:intergenic 50.0%
!! AGCGCAAGCCGGTTTGAATT+AGG + chr2_3:33586335-33586354 None:intergenic 50.0%
ACCTATTCGATAGCGCAAGC+CGG + chr2_3:33586346-33586365 None:intergenic 50.0%
TGGGTTGTCACCAAGAGTTG+AGG - chr2_3:33586577-33586596 Msa0288420:CDS 50.0%
! CGCCCTTTTCCCCATATTTC+AGG - chr2_3:33586669-33586688 Msa0288420:CDS 50.0%
AGAGAAGGAGGGTCTGTGTA+AGG + chr2_3:33586722-33586741 None:intergenic 50.0%
CAAACGGAGGTAGAGAAGGA+GGG + chr2_3:33586733-33586752 None:intergenic 50.0%
TCAAACGGAGGTAGAGAAGG+AGG + chr2_3:33586734-33586753 None:intergenic 50.0%
GCATCAAACGGAGGTAGAGA+AGG + chr2_3:33586737-33586756 None:intergenic 50.0%
AGTTTATCGGCAAGAGGTCC+AGG - chr2_3:33586773-33586792 Msa0288420:CDS 50.0%
GTTTATCGGCAAGAGGTCCA+GGG - chr2_3:33586774-33586793 Msa0288420:CDS 50.0%
CTCATCAGGCGATTCCTGAA+TGG - chr2_3:33586948-33586967 Msa0288420:five_prime_UTR 50.0%
TGAAATGGGATGTGGGAAGC+GGG + chr2_3:33585152-33585171 None:intergenic 50.0%
GTGAAATGGGATGTGGGAAG+CGG + chr2_3:33585153-33585172 None:intergenic 50.0%
GGAATTGGAGGCGGTGAAAT+GGG + chr2_3:33585166-33585185 None:intergenic 50.0%
AGGAATTGGAGGCGGTGAAA+TGG + chr2_3:33585167-33585186 None:intergenic 50.0%
TCGCTGGAAAGAACACCGTT+TGG + chr2_3:33585519-33585538 None:intergenic 50.0%
TGATGCTGCGAAACGGAATC+GGG + chr2_3:33585573-33585592 None:intergenic 50.0%
CACGATGAGAGGCTTAAACG+CGG - chr2_3:33585687-33585706 Msa0288420:CDS 50.0%
TTAAGCGCGGCGTTACCAAT+AGG + chr2_3:33585888-33585907 None:intergenic 50.0%
ACAGGCAAACTAAGAGCAGG+CGG + chr2_3:33585921-33585940 None:intergenic 50.0%
AGACTGATTGACTGTTGCCG+CGG + chr2_3:33585961-33585980 None:intergenic 50.0%
AGTCAATCAGTCTGTCCTGC+AGG - chr2_3:33585968-33585987 Msa0288420:CDS 50.0%
GTCAATCAGTCTGTCCTGCA+GGG - chr2_3:33585969-33585988 Msa0288420:CDS 50.0%
AGAAGGTGAAGCTTTCCCAC+CGG - chr2_3:33586229-33586248 Msa0288420:CDS 50.0%
GCCCTCCTCCTAATTCAAAC+CGG - chr2_3:33586324-33586343 Msa0288420:CDS 50.0%
!! GCCGGTTTGAATTAGGAGGA+GGG + chr2_3:33586328-33586347 None:intergenic 50.0%
!! AGCCGGTTTGAATTAGGAGG+AGG + chr2_3:33586329-33586348 None:intergenic 50.0%
!! GCAAGCCGGTTTGAATTAGG+AGG + chr2_3:33586332-33586351 None:intergenic 50.0%
!! AGCGCAAGCCGGTTTGAATT+AGG + chr2_3:33586335-33586354 None:intergenic 50.0%
ACCTATTCGATAGCGCAAGC+CGG + chr2_3:33586346-33586365 None:intergenic 50.0%
TGGGTTGTCACCAAGAGTTG+AGG - chr2_3:33586577-33586596 Msa0288420:CDS 50.0%
! CGCCCTTTTCCCCATATTTC+AGG - chr2_3:33586669-33586688 Msa0288420:CDS 50.0%
AGAGAAGGAGGGTCTGTGTA+AGG + chr2_3:33586722-33586741 None:intergenic 50.0%
CAAACGGAGGTAGAGAAGGA+GGG + chr2_3:33586733-33586752 None:intergenic 50.0%
TCAAACGGAGGTAGAGAAGG+AGG + chr2_3:33586734-33586753 None:intergenic 50.0%
GCATCAAACGGAGGTAGAGA+AGG + chr2_3:33586737-33586756 None:intergenic 50.0%
AGTTTATCGGCAAGAGGTCC+AGG - chr2_3:33586773-33586792 Msa0288420:CDS 50.0%
GTTTATCGGCAAGAGGTCCA+GGG - chr2_3:33586774-33586793 Msa0288420:CDS 50.0%
CTCATCAGGCGATTCCTGAA+TGG - chr2_3:33586948-33586967 Msa0288420:five_prime_UTR 50.0%
GAGGCGGTGAAATGGGATGT+GGG + chr2_3:33585159-33585178 None:intergenic 55.0%
CGGTGTTCTTTCCAGCGAAG+AGG - chr2_3:33585521-33585540 Msa0288420:CDS 55.0%
GATGCTGCGAAACGGAATCG+GGG + chr2_3:33585572-33585591 None:intergenic 55.0%
ACAGACAGCGACACGATGAG+AGG - chr2_3:33585676-33585695 Msa0288420:CDS 55.0%
GATGAGAGGCTTAAACGCGG+TGG - chr2_3:33585690-33585709 Msa0288420:CDS 55.0%
AAATGGCCACCACCTGTTCC+TGG - chr2_3:33585846-33585865 Msa0288420:CDS 55.0%
ATCACCTGACCAGGAACAGG+TGG + chr2_3:33585858-33585877 None:intergenic 55.0%
ACCTGTTCCTGGTCAGGTGA+TGG - chr2_3:33585857-33585876 Msa0288420:CDS 55.0%
TCCATCACCTGACCAGGAAC+AGG + chr2_3:33585861-33585880 None:intergenic 55.0%
GGAAGATCCATCACCTGACC+AGG + chr2_3:33585867-33585886 None:intergenic 55.0%
! GCAACATTGTGGAGGCGTAG+GGG + chr2_3:33586099-33586118 None:intergenic 55.0%
! CGCAACATTGTGGAGGCGTA+GGG + chr2_3:33586100-33586119 None:intergenic 55.0%
! TCGCAACATTGTGGAGGCGT+AGG + chr2_3:33586101-33586120 None:intergenic 55.0%
TACGCCTCCACAATGTTGCG+AGG - chr2_3:33586100-33586119 Msa0288420:CDS 55.0%
ACAGCCTCGCAACATTGTGG+AGG + chr2_3:33586107-33586126 None:intergenic 55.0%
GCAACAGCCTCGCAACATTG+TGG + chr2_3:33586110-33586129 None:intergenic 55.0%
!! ACCGGCTTGCGCTATCGAAT+AGG - chr2_3:33586342-33586361 Msa0288420:CDS 55.0%
TCTGGCAGACCTGAAGGTCT+TGG - chr2_3:33586383-33586402 Msa0288420:CDS 55.0%
CTGGCAGACCTGAAGGTCTT+GGG - chr2_3:33586384-33586403 Msa0288420:CDS 55.0%
GAGGCGGTGAAATGGGATGT+GGG + chr2_3:33585159-33585178 None:intergenic 55.0%
CGGTGTTCTTTCCAGCGAAG+AGG - chr2_3:33585521-33585540 Msa0288420:CDS 55.0%
GATGCTGCGAAACGGAATCG+GGG + chr2_3:33585572-33585591 None:intergenic 55.0%
ACAGACAGCGACACGATGAG+AGG - chr2_3:33585676-33585695 Msa0288420:CDS 55.0%
GATGAGAGGCTTAAACGCGG+TGG - chr2_3:33585690-33585709 Msa0288420:CDS 55.0%
AAATGGCCACCACCTGTTCC+TGG - chr2_3:33585846-33585865 Msa0288420:CDS 55.0%
ATCACCTGACCAGGAACAGG+TGG + chr2_3:33585858-33585877 None:intergenic 55.0%
ACCTGTTCCTGGTCAGGTGA+TGG - chr2_3:33585857-33585876 Msa0288420:CDS 55.0%
TCCATCACCTGACCAGGAAC+AGG + chr2_3:33585861-33585880 None:intergenic 55.0%
GGAAGATCCATCACCTGACC+AGG + chr2_3:33585867-33585886 None:intergenic 55.0%
! GCAACATTGTGGAGGCGTAG+GGG + chr2_3:33586099-33586118 None:intergenic 55.0%
! CGCAACATTGTGGAGGCGTA+GGG + chr2_3:33586100-33586119 None:intergenic 55.0%
! TCGCAACATTGTGGAGGCGT+AGG + chr2_3:33586101-33586120 None:intergenic 55.0%
TACGCCTCCACAATGTTGCG+AGG - chr2_3:33586100-33586119 Msa0288420:CDS 55.0%
ACAGCCTCGCAACATTGTGG+AGG + chr2_3:33586107-33586126 None:intergenic 55.0%
GCAACAGCCTCGCAACATTG+TGG + chr2_3:33586110-33586129 None:intergenic 55.0%
!! ACCGGCTTGCGCTATCGAAT+AGG - chr2_3:33586342-33586361 Msa0288420:CDS 55.0%
TCTGGCAGACCTGAAGGTCT+TGG - chr2_3:33586383-33586402 Msa0288420:CDS 55.0%
CTGGCAGACCTGAAGGTCTT+GGG - chr2_3:33586384-33586403 Msa0288420:CDS 55.0%
GGAGGCGGTGAAATGGGATG+TGG + chr2_3:33585160-33585179 None:intergenic 60.0%
CTGCGAAACGGAATCGGGGA+AGG + chr2_3:33585568-33585587 None:intergenic 60.0%
ACCTGACCAGGAACAGGTGG+TGG + chr2_3:33585855-33585874 None:intergenic 60.0%
GGAGGCGGTGAAATGGGATG+TGG + chr2_3:33585160-33585179 None:intergenic 60.0%
CTGCGAAACGGAATCGGGGA+AGG + chr2_3:33585568-33585587 None:intergenic 60.0%
ACCTGACCAGGAACAGGTGG+TGG + chr2_3:33585855-33585874 None:intergenic 60.0%
TGGGATGTGGGAAGCGGGTC+TGG + chr2_3:33585147-33585166 None:intergenic 65.0%
GCCACCACCTGTTCCTGGTC+AGG - chr2_3:33585851-33585870 Msa0288420:CDS 65.0%
TGGGATGTGGGAAGCGGGTC+TGG + chr2_3:33585147-33585166 None:intergenic 65.0%
GCCACCACCTGTTCCTGGTC+AGG - chr2_3:33585851-33585870 Msa0288420:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 33585078 33587178 33585078 ID=Msa0288420;Name=Msa0288420
chr2_3 mRNA 33585078 33587178 33585078 ID=Msa0288420-mRNA-1;Parent=Msa0288420;Name=Msa0288420-mRNA-1;_AED=0.01;_eAED=0.01;_QI=300|1|0.5|1|1|1|2|0|562
chr2_3 exon 33585078 33585300 33585078 ID=Msa0288420-mRNA-1:exon:11059;Parent=Msa0288420-mRNA-1
chr2_3 exon 33585413 33587178 33585413 ID=Msa0288420-mRNA-1:exon:11058;Parent=Msa0288420-mRNA-1
chr2_3 five_prime_UTR 33586879 33587178 33586879 ID=Msa0288420-mRNA-1:five_prime_utr;Parent=Msa0288420-mRNA-1
chr2_3 CDS 33585413 33586878 33585413 ID=Msa0288420-mRNA-1:cds;Parent=Msa0288420-mRNA-1
chr2_3 CDS 33585078 33585300 33585078 ID=Msa0288420-mRNA-1:cds;Parent=Msa0288420-mRNA-1
Gene Sequence

>Msa0288420

ATGAGCAGGTCTCCTTCGTTTTCACTGAAAACGGAAGTGAGTCCGAGTGTTGACTCACAATCACTCAAGAAATGGGTTGTTGCATTTTGTGCTATTCGATTCGATCTCGAACAAGGTCAACTCGTCGAAGAATGTTATCCAAACGGTGTTCTTTCCAGCGAAGAGGAGCTTGAAATTGCTTACAGTTCCTTCCCCGATTCCGTTTCGCAGCATCAAAACCGATCCAGCATTCATGATTGCATTTTCTTTTTTCGAATTTGCAGGCGTAATAATGAATATTTATATGGTTATGTTTTTAACAGACAGCGACACGATGAGAGGCTTAAACGCGGTGGCGAACAGAAATCTGTTGTGATTTTATCTCACTCTCCTTATTCTAGTGTTTTTAGACCTTTGTTACAGATTGTAGGTCCTTTGTTTTTCGACATTGGTAAAAAAGCACTTGAACATATTGCTGCTTTTGTTTCAAAATGGCCACCACCTGTTCCTGGTCAGGTGATGGATCTTCCTATTGGTAACGCCGCGCTTAAAGTTAACTTACCGCCTGCTCTTAGTTTGCCTGTTGACGATTATGTTTCTTCCGCGGCAACAGTCAATCAGTCTGTCCTGCAGGGTCTTTTTCATGACTCGGATCTTTTTGGATCGTTTCGTGGACTTTTATTGCAGCTTTGGTTGTTATGGGAGTTGTTGCTTATTGGTGAACCAATGCTTATCATTGCCCCTACGCCTCCACAATGTTGCGAGGCTGTTGCTAGTCTTGTAAGTTTGGTTGCACCGTTGCTTTGTAGTGTTGATTTTCGGCCTTATTTTACCATTCATGACCCTATTTTTGCAAAATTAAACTCAATTCAAGAAGGTGAAGCTTTCCCACCGGTTATATTAGGTGTGACGAATCTTTTCTTCCTCAAAGCGCTTCGTAACATTCCACATATTGTTTCGGTTGGAAGCCCTCCTCCTAATTCAAACCGGCTTGCGCTATCGAATAGGTCTTCTACTGGCAGAATTTCTGGCAGACCTGAAGGTCTTGGGTTTCAACAACTTTCACTAAGAAGGTTCTCTCCTACAAGTTTATTGAATGCTGTTAAGATGCGAAGAGACGGTCCTCTTTGTCTAATGACCGAACATAAGGAAGCCATTTGGAGTACTTATTCGGCTACGACTAAGCCAGATACTTCTATCTTAAACAGGCTGATAGATGCTGGGTTGTCACCAAGAGTTGAGGAGTCAATGTCTGTTGTGAACAATGAGATATTACGGAGACATTTCTTGGAGCTCACTACTAATTTCTTGGCGCCCTTTTCCCCATATTTCAGGACTACAATGCCATTAGAAGGATCTTCTCCTTACACAGACCCTCCTTCTCTACCTCCGTTTGATGCCAATGAATTTCTTGCTAGTTTATCGGCAAGAGGTCCAGGGAAGTTCATTTTAAAGCGAATGAAATCTAACTGGCTTGACTTATACAGGCGATTCCTGAATGGACCAAACTTTAAGCCGTGGTTTCAAAGAAAGCGTGCTGTTGCTGTGCAAGAGCAAGATAGATTGTGGAGGCAAGCAAGGATAAAAGCTGACATACACCAGCTTATTTCTAAATTTTCTGAGGTCGAAATTGTGGATTCTTTCGGTGTTATAGAGAGACTTCTCCTCAAAGAAATACAGGTAATTTTCTCTCCTGAGGTCCTCAAATGA
Protein sequence

>Msa0288420

MSRSPSFSLKTEVSPSVDSQSLKKWVVAFCAIRFDLEQGQLVEECYPNGVLSSEEELEIAYSSFPDSVSQHQNRSSIHDCIFFFRICRRNNEYLYGYVFNRQRHDERLKRGGEQKSVVILSHSPYSSVFRPLLQIVGPLFFDIGKKALEHIAAFVSKWPPPVPGQVMDLPIGNAALKVNLPPALSLPVDDYVSSAATVNQSVLQGLFHDSDLFGSFRGLLLQLWLLWELLLIGEPMLIIAPTPPQCCEAVASLVSLVAPLLCSVDFRPYFTIHDPIFAKLNSIQEGEAFPPVILGVTNLFFLKALRNIPHIVSVGSPPPNSNRLALSNRSSTGRISGRPEGLGFQQLSLRRFSPTSLLNAVKMRRDGPLCLMTEHKEAIWSTYSATTKPDTSILNRLIDAGLSPRVEESMSVVNNEILRRHFLELTTNFLAPFSPYFRTTMPLEGSSPYTDPPSLPPFDANEFLASLSARGPGKFILKRMKSNWLDLYRRFLNGPNFKPWFQRKRAVAVQEQDRLWRQARIKADIHQLISKFSEVEIVDSFGVIERLLLKEIQVIFSPEVLK*