Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516510 | KEH35467.1 | 99.770 | 869 | 2 | 0 | 1 | 869 | 1 | 869 | 0.0 | 1792 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516510 | sp|Q9FJD4|IMB1_ARATH | 79.517 | 869 | 177 | 1 | 1 | 869 | 3 | 870 | 0.0 | 1437 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516510 | A0A072V0X7 | 99.770 | 869 | 2 | 0 | 1 | 869 | 1 | 869 | 0.0 | 1792 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012240 | Msa0516510 | -0.802790 | 4.745677e-49 | -8.615850e-47 |
| Msa0033160 | Msa0516510 | 0.818443 | 1.955047e-52 | -8.615850e-47 |
| Msa0036670 | Msa0516510 | -0.800767 | 1.235217e-48 | -8.615850e-47 |
| Msa0049650 | Msa0516510 | 0.829548 | 4.841304e-55 | -8.615850e-47 |
| Msa0054730 | Msa0516510 | 0.828061 | 1.108002e-54 | -8.615850e-47 |
| Msa0058210 | Msa0516510 | 0.862918 | 3.604743e-64 | -8.615850e-47 |
| Msa0058390 | Msa0516510 | 0.830988 | 2.152870e-55 | -8.615850e-47 |
| Msa0074900 | Msa0516510 | 0.826656 | 2.406876e-54 | -8.615850e-47 |
| Msa0090770 | Msa0516510 | 0.829999 | 3.759946e-55 | -8.615850e-47 |
| Msa0138390 | Msa0516510 | 0.803725 | 3.039514e-49 | -8.615850e-47 |
| Msa0138560 | Msa0516510 | 0.861141 | 1.263564e-63 | -8.615850e-47 |
| Msa0167210 | Msa0516510 | 0.838822 | 2.288185e-57 | -8.615850e-47 |
| Msa0183640 | Msa0516510 | 0.853036 | 3.114578e-61 | -8.615850e-47 |
| Msa0238070 | Msa0516510 | 0.809380 | 1.947242e-50 | -8.615850e-47 |
| Msa0376450 | Msa0516510 | 0.996200 | 1.374163e-224 | -8.615850e-47 |
| Msa0377970 | Msa0516510 | 0.809887 | 1.514812e-50 | -8.615850e-47 |
| Msa0378490 | Msa0516510 | -0.800488 | 1.407604e-48 | -8.615850e-47 |
| Msa0419310 | Msa0516510 | -0.887281 | 1.637540e-72 | -8.615850e-47 |
| Msa0425120 | Msa0516510 | 0.979039 | 4.223741e-147 | -8.615850e-47 |
| Msa0427620 | Msa0516510 | 0.802513 | 5.412973e-49 | -8.615850e-47 |
| Msa0430620 | Msa0516510 | -0.821778 | 3.369255e-53 | -8.615850e-47 |
| Msa0471720 | Msa0516510 | 0.996327 | 3.874103e-226 | -8.615850e-47 |
| Msa0240450 | Msa0516510 | 0.800751 | 1.244021e-48 | -8.615850e-47 |
| Msa0260950 | Msa0516510 | 0.806745 | 7.085194e-50 | -8.615850e-47 |
| Msa0267310 | Msa0516510 | -0.811444 | 6.980137e-51 | -8.615850e-47 |
| Msa0270030 | Msa0516510 | 0.820457 | 6.791042e-53 | -8.615850e-47 |
| Msa0288420 | Msa0516510 | 0.802119 | 6.526564e-49 | -8.615850e-47 |
| Msa0315930 | Msa0516510 | 0.855228 | 7.262645e-62 | -8.615850e-47 |
| Msa0318250 | Msa0516510 | -0.811821 | 5.780700e-51 | -8.615850e-47 |
| Msa0352330 | Msa0516510 | -0.816104 | 6.567089e-52 | -8.615850e-47 |
| Msa0516510 | Msa0518130 | 0.810269 | 1.253556e-50 | -8.615850e-47 |
| Msa0516510 | Msa0605170 | -0.801619 | 8.266067e-49 | -8.615850e-47 |
| Msa0516510 | Msa0607340 | 0.852297 | 5.062847e-61 | -8.615850e-47 |
| Msa0516510 | Msa0661190 | 0.801842 | 7.439618e-49 | -8.615850e-47 |
| Msa0516510 | Msa0717920 | 0.831913 | 1.274827e-55 | -8.615850e-47 |
| Msa0516510 | Msa0729290 | 0.813768 | 2.165634e-51 | -8.615850e-47 |
| Msa0516510 | Msa0738630 | 0.825100 | 5.633386e-54 | -8.615850e-47 |
| Msa0516510 | Msa0783760 | 0.831284 | 1.820999e-55 | -8.615850e-47 |
| Msa0516510 | Msa0807650 | 0.809576 | 1.767020e-50 | -8.615850e-47 |
| Msa0516510 | Msa0813320 | 0.811685 | 6.187665e-51 | -8.615850e-47 |
| Msa0516510 | Msa0818980 | 0.822105 | 2.829415e-53 | -8.615850e-47 |
| Msa0516510 | Msa0819030 | 0.808847 | 2.532457e-50 | -8.615850e-47 |
| Msa0516510 | Msa0849510 | -0.811035 | 8.563658e-51 | -8.615850e-47 |
| Msa0516510 | Msa0867050 | 0.825394 | 4.801460e-54 | -8.615850e-47 |
| Msa0516510 | Msa0967650 | 0.996353 | 1.883192e-226 | -8.615850e-47 |
| Msa0516510 | Msa1018020 | 0.800270 | 1.559110e-48 | -8.615850e-47 |
| Msa0516510 | Msa1040110 | 0.836750 | 7.790584e-57 | -8.615850e-47 |
| Msa0516510 | Msa1072460 | 0.805075 | 1.590167e-49 | -8.615850e-47 |
| Msa0516510 | Msa1098180 | 0.812632 | 3.845358e-51 | -8.615850e-47 |
| Msa0516510 | Msa1119250 | 0.821980 | 3.026100e-53 | -8.615850e-47 |
| Msa0516510 | Msa1119300 | 0.838627 | 2.570083e-57 | -8.615850e-47 |
| Msa0516510 | Msa1138240 | 0.815430 | 9.280787e-52 | -8.615850e-47 |
| Msa0516510 | Msa1200880 | 0.820847 | 5.523834e-53 | -8.615850e-47 |
| Msa0516510 | Msa1215570 | 0.829891 | 3.992787e-55 | -8.615850e-47 |
| Msa0516510 | Msa1245540 | -0.800898 | 1.161152e-48 | -8.615850e-47 |
| Msa0516510 | Msa1260130 | -0.800705 | 1.271558e-48 | -8.615850e-47 |
| Msa0516510 | Msa1279490 | 0.805474 | 1.311654e-49 | -8.615850e-47 |
| Msa0516510 | Msa1307010 | 0.821350 | 4.231278e-53 | -8.615850e-47 |
| Msa0516510 | Msa1307660 | 0.835330 | 1.787045e-56 | -8.615850e-47 |
| Msa0516510 | Msa1336950 | -0.804064 | 2.584195e-49 | -8.615850e-47 |
| Msa0516510 | Msa1351640 | 0.813040 | 3.129745e-51 | -8.615850e-47 |
| Msa0516510 | Msa1358610 | 0.822671 | 2.091047e-53 | -8.615850e-47 |
| Msa0516510 | Msa1365700 | 0.818075 | 2.368111e-52 | -8.615850e-47 |
| Msa0516510 | Msa1375060 | 0.813909 | 2.016063e-51 | -8.615850e-47 |
| Msa0516510 | Msa1384820 | 0.866223 | 3.336015e-65 | -8.615850e-47 |
| Msa0516510 | Msa1385770 | -0.801947 | 7.080729e-49 | -8.615850e-47 |
| Msa0516510 | Msa1392330 | 0.815434 | 9.262841e-52 | -8.615850e-47 |
| Msa0516510 | Msa1396750 | 0.848758 | 4.997088e-60 | -8.615850e-47 |
| Msa0516510 | Msa1403680 | -0.824078 | 9.809715e-54 | -8.615850e-47 |
| Msa0516510 | Msa1409240 | -0.801015 | 1.099181e-48 | -8.615850e-47 |
| Msa0516510 | Msa1410430 | 0.829428 | 5.176545e-55 | -8.615850e-47 |
| Msa0516510 | Msa1423580 | 0.805386 | 1.368679e-49 | -8.615850e-47 |
| Msa0516510 | Msa1442160 | 0.842385 | 2.670439e-58 | -8.615850e-47 |
| Msa0516510 | Msa1449250 | 0.806545 | 7.809647e-50 | -8.615850e-47 |
| Msa0516510 | Msa1452090 | 0.850811 | 1.333756e-60 | -8.615850e-47 |
| Msa0516510 | Msa1453780 | 0.859438 | 4.135193e-63 | -8.615850e-47 |
| Msa0516510 | Msa1460630 | -0.806052 | 9.917272e-50 | -8.615850e-47 |
| Msa0516510 | Msa1460820 | 0.813900 | 2.025105e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516510 | MtrunA17_Chr3g0127121 | 99.770 | 869 | 2 | 0 | 1 | 869 | 1 | 869 | 0.0 | 1792 |
| Msa0516510 | MtrunA17_Chr3g0127101 | 90.679 | 869 | 80 | 1 | 1 | 869 | 1 | 868 | 0.0 | 1591 |
| Msa0516510 | MtrunA17_Chr8g0388661 | 77.995 | 868 | 188 | 2 | 1 | 867 | 3 | 868 | 0.0 | 1427 |
| Msa0516510 | MtrunA17_Chr1g0178291 | 32.517 | 449 | 240 | 15 | 127 | 536 | 3 | 427 | 7.28e-40 | 156 |
| Msa0516510 | MtrunA17_Chr1g0211341 | 23.726 | 628 | 342 | 26 | 29 | 590 | 45 | 601 | 7.13e-21 | 98.6 |
| Msa0516510 | MtrunA17_Chr2g0277681 | 22.260 | 584 | 367 | 20 | 14 | 578 | 16 | 531 | 1.03e-12 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516510 | AT5G53480.1 | 79.517 | 869 | 177 | 1 | 1 | 869 | 3 | 870 | 0.0 | 1437 |
| Msa0516510 | AT3G08947.1 | 57.099 | 655 | 276 | 5 | 213 | 865 | 1 | 652 | 0.0 | 747 |
| Msa0516510 | AT3G08947.2 | 59.386 | 586 | 233 | 5 | 213 | 796 | 1 | 583 | 0.0 | 700 |
| Msa0516510 | AT2G16950.2 | 24.503 | 604 | 331 | 23 | 46 | 590 | 61 | 598 | 1.27e-26 | 117 |
| Msa0516510 | AT2G16950.1 | 24.507 | 608 | 330 | 24 | 46 | 590 | 61 | 602 | 8.00e-26 | 115 |
Find 255 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTCTTGGTCTCTCTTTC+TGG | -0.012550 | 3_4:-68012097 | Msa0516510:CDS |
| CAGATCTCTTCTCCGATTTC+AGG | 0.165331 | 3_4:-68013585 | Msa0516510:intron |
| CTTGAACGTACTGGACTTAA+TGG | 0.190615 | 3_4:+68009305 | None:intergenic |
| CTCTCCAAGCCATTGAATTC+TGG | 0.197925 | 3_4:-68011376 | Msa0516510:CDS |
| AGAAAGTCTTCGGCAATTTC+AGG | 0.216352 | 3_4:-68012134 | Msa0516510:CDS |
| CTTGAAAGTACTGGACTTAA+TGG | 0.254879 | 3_4:+68009255 | None:intergenic |
| TGACAAAGACTGTTGAATTA+AGG | 0.267917 | 3_4:+68009621 | None:intergenic |
| GGGATATTAGAGGCATATTC+TGG | 0.268252 | 3_4:-68009913 | Msa0516510:CDS |
| GCATTTCCCTCATTAATAAT+AGG | 0.268484 | 3_4:+68010861 | None:intergenic |
| GACACCACTGCTTGGACTTT+GGG | 0.272684 | 3_4:-68010924 | Msa0516510:CDS |
| GCAAAACCTTCCTGGTTTCT+TGG | 0.279761 | 3_4:-68012110 | Msa0516510:CDS |
| CAGCCTTTCTCAGCAACATT+AGG | 0.287721 | 3_4:+68010795 | None:intergenic |
| TCCCCACATTCTCCAGTTCT+TGG | 0.294606 | 3_4:-68009836 | Msa0516510:CDS |
| ACTAGAGCACTGAGCATAAA+TGG | 0.300642 | 3_4:+68010972 | None:intergenic |
| CAAGTTGTTGCTAAAATTGC+TGG | 0.301501 | 3_4:-68011866 | Msa0516510:CDS |
| GTTTCTTGGTCTCTCTTTCT+GGG | 0.305155 | 3_4:-68012096 | Msa0516510:CDS |
| TACATTAACTCTTTGAGAAA+TGG | 0.314718 | 3_4:-68009934 | Msa0516510:CDS |
| GGCAGGTATTTAGCAAAATC+AGG | 0.324114 | 3_4:+68010288 | None:intergenic |
| ATACTGCAAGAGAACATATT+TGG | 0.329593 | 3_4:+68010416 | None:intergenic |
| TCAAGAAACTTGTAAAATTC+AGG | 0.332719 | 3_4:+68010267 | None:intergenic |
| AGACACCACTGCTTGGACTT+TGG | 0.341617 | 3_4:-68010925 | Msa0516510:CDS |
| AACTTATAGGCCTTCTTTGT+GGG | 0.345240 | 3_4:-68010482 | Msa0516510:CDS |
| GCTTCCCTCTGTCTCCAATC+TGG | 0.354117 | 3_4:+68011071 | None:intergenic |
| GCAGTATGCTGATCAGATAA+TGG | 0.356944 | 3_4:-68010400 | Msa0516510:CDS |
| TTTCAGGAGCAAAACCTTCC+TGG | 0.362971 | 3_4:-68012118 | Msa0516510:CDS |
| ATAAACTACTTGCATGCATT+TGG | 0.372420 | 3_4:-68009467 | Msa0516510:three_prime_UTR |
| ATTCTTACTGCTGTAGTTCA+AGG | 0.372529 | 3_4:-68011683 | Msa0516510:CDS |
| TTTGAGAAATGGGATATTAG+AGG | 0.373265 | 3_4:-68009923 | Msa0516510:CDS |
| AACAGATATAGCACGATTGA+TGG | 0.383244 | 3_4:+68009522 | None:intergenic |
| GGGTGTGTCGAGGTGGGTCG+TGG | 0.383683 | 3_4:-68009446 | Msa0516510:three_prime_UTR |
| GAAGAAGAGCGAAGGAAGGA+AGG | 0.384641 | 3_4:+68013644 | None:intergenic |
| AACAGATGAAACAGCTCCTT+TGG | 0.387973 | 3_4:-68010595 | Msa0516510:CDS |
| AGCCTTTCTCAGCAACATTA+GGG | 0.389846 | 3_4:+68010796 | None:intergenic |
| TAAACTACTTGCATGCATTT+GGG | 0.392888 | 3_4:-68009466 | Msa0516510:three_prime_UTR |
| GGTTTAGTTGCTCGTACTAC+TGG | 0.395020 | 3_4:-68011146 | Msa0516510:CDS |
| GAACTTATAGGCCTTCTTTG+TGG | 0.395988 | 3_4:-68010483 | Msa0516510:CDS |
| GGAGAACTGTAATAATTTGT+TGG | 0.397331 | 3_4:+68010838 | None:intergenic |
| ACATCACAGCAAAGGCTGTT+AGG | 0.397636 | 3_4:-68011418 | Msa0516510:CDS |
| GTATGCATTTGGCTCTATCT+TGG | 0.398069 | 3_4:-68011042 | Msa0516510:CDS |
| GTATCAAACCTGCCAACTTT+CGG | 0.403548 | 3_4:+68012041 | None:intergenic |
| GCCAACTTTCGGCTATCAAC+TGG | 0.406087 | 3_4:+68012052 | None:intergenic |
| TACTCCAGAATTCAATGGCT+TGG | 0.406106 | 3_4:+68011372 | None:intergenic |
| CCTCTGTCTCCAATCTGGTT+TGG | 0.406779 | 3_4:+68011076 | None:intergenic |
| TGAAAACAGAAAGCGGGAAT+TGG | 0.407494 | 3_4:-68011993 | Msa0516510:CDS |
| TTTCTTCACAGTTCAATTGT+TGG | 0.411323 | 3_4:-68010888 | Msa0516510:CDS |
| TGCAGCGAAGGCCCAGGTTA+AGG | 0.412867 | 3_4:-68011945 | Msa0516510:CDS |
| GCAAGCAACTTTGGAGACTC+TGG | 0.414579 | 3_4:-68011762 | Msa0516510:CDS |
| GAGCATAAGGAATCAAGATC+TGG | 0.417948 | 3_4:+68009857 | None:intergenic |
| GTGTAGTCGGCGACATATGC+AGG | 0.418380 | 3_4:-68010194 | Msa0516510:CDS |
| GAGGAGGCCATGCTAGCTAT+TGG | 0.419964 | 3_4:-68010333 | Msa0516510:CDS |
| ACAAGAGGTACTAATTTGTC+TGG | 0.420575 | 3_4:+68011008 | None:intergenic |
| CTTACGTACAGTTCCGTCAA+TGG | 0.421548 | 3_4:+68012165 | None:intergenic |
| ACATTAACTCTTTGAGAAAT+GGG | 0.422715 | 3_4:-68009933 | Msa0516510:CDS |
| AATAGTGATCCTATCAGTTC+AGG | 0.424523 | 3_4:+68011818 | None:intergenic |
| AGCACGATTGATGGCCAACT+TGG | 0.424564 | 3_4:+68009531 | None:intergenic |
| GAGAACTGTAATAATTTGTT+GGG | 0.427273 | 3_4:+68010839 | None:intergenic |
| TGCACTCGTCCCTCTGCTGT+TGG | 0.428521 | 3_4:-68011249 | Msa0516510:CDS |
| ATGCAAGAGTTAGTGACAAC+TGG | 0.431951 | 3_4:+68009362 | None:intergenic |
| TGTATATGCTATCCAAGAAC+TGG | 0.432522 | 3_4:+68009824 | None:intergenic |
| TGATGAAGAGACTGATATCT+TGG | 0.432783 | 3_4:-68011342 | Msa0516510:CDS |
| CTTCTTCCTCTTGAAAGTAC+TGG | 0.433674 | 3_4:+68009246 | None:intergenic |
| TCAATGGCTTGGAGAGCAAC+AGG | 0.436583 | 3_4:+68011383 | None:intergenic |
| ATGTCAGACTTGCTGCTGCC+AGG | 0.436780 | 3_4:-68011634 | Msa0516510:CDS |
| CAGTATGCTGATCAGATAAT+GGG | 0.437742 | 3_4:-68010399 | Msa0516510:CDS |
| TGGAGAATGTGGGGAGCATA+AGG | 0.441829 | 3_4:+68009844 | None:intergenic |
| AACAGCAGAGGGACGAGTGC+AGG | 0.444736 | 3_4:+68011251 | None:intergenic |
| AATCGTGCTATATCTGTTTG+AGG | 0.448881 | 3_4:-68009517 | Msa0516510:exon |
| GAAGCAGCGACGTATGCATT+TGG | 0.449296 | 3_4:-68011053 | Msa0516510:CDS |
| TCATGTCAAGCAAGCAACTT+TGG | 0.450868 | 3_4:-68011771 | Msa0516510:CDS |
| GAAGCAAACATGCCTTAACC+TGG | 0.450881 | 3_4:+68011933 | None:intergenic |
| ACAGTCATTATTCAGAAGCT+AGG | 0.451708 | 3_4:-68010453 | Msa0516510:CDS |
| TTGAATGCTCAATCCATTGA+CGG | 0.452532 | 3_4:-68012178 | Msa0516510:CDS |
| GTCTTGATCAACAACCTCAT+GGG | 0.455712 | 3_4:+68011718 | None:intergenic |
| TGCATTTGGCTCTATCTTGG+AGG | 0.457960 | 3_4:-68011039 | Msa0516510:CDS |
| GCTTGACATGAGCAGGAACT+TGG | 0.460430 | 3_4:+68011783 | None:intergenic |
| GATGGCCAACTTGGCCCATT+CGG | 0.460803 | 3_4:+68009540 | None:intergenic |
| TTGATGAATTCTTAAACCCT+TGG | 0.462813 | 3_4:+68009884 | None:intergenic |
| AATTGTACTCCAGAATTCAA+TGG | 0.464626 | 3_4:+68011367 | None:intergenic |
| AACCCTGGGCGAGAAAATAC+AGG | 0.464646 | 3_4:+68010766 | None:intergenic |
| CGCCCAGGGTTATGAGGATG+TGG | 0.470202 | 3_4:-68010754 | Msa0516510:CDS |
| TCCTGAATTGAAAATACGTC+TGG | 0.474094 | 3_4:-68011516 | Msa0516510:CDS |
| TTATATATGTCCTGGATGTA+AGG | 0.474321 | 3_4:+68011440 | None:intergenic |
| AACTGAAAGTATCTGTTTGA+AGG | 0.474424 | 3_4:-68009389 | Msa0516510:three_prime_UTR |
| GAGATGTACGCCCACACATC+AGG | 0.474951 | 3_4:-68009979 | Msa0516510:CDS |
| ACAAGAAGAGGATCAAGATC+TGG | 0.475193 | 3_4:-68011213 | Msa0516510:CDS |
| GATACACTTGGAAGCAATGC+TGG | 0.475465 | 3_4:-68009646 | Msa0516510:CDS |
| CTCTGTGGGTGACAGTGAGA+AGG | 0.475830 | 3_4:+68010685 | None:intergenic |
| AAACAGTGGCCTGAACTGAT+AGG | 0.477544 | 3_4:-68011827 | Msa0516510:CDS |
| AGATAATGGGACTATTCATC+CGG | 0.478120 | 3_4:-68010386 | Msa0516510:CDS |
| AAAATATTCCCTTACTGTGA+TGG | 0.478884 | 3_4:-68010159 | Msa0516510:CDS |
| AAATATTCCCTTACTGTGAT+GGG | 0.479316 | 3_4:-68010158 | Msa0516510:CDS |
| GTCATAATCCCATCACAGTA+AGG | 0.480569 | 3_4:+68010150 | None:intergenic |
| CGACATATGCAGGGCATTGG+AGG | 0.480820 | 3_4:-68010184 | Msa0516510:CDS |
| CATGGCCTCCTCATGGGCAG+TGG | 0.481836 | 3_4:+68010344 | None:intergenic |
| GATTAAAGAATCTGCCGAAT+GGG | 0.485471 | 3_4:-68009554 | Msa0516510:CDS |
| GCATTTGGCTCTATCTTGGA+GGG | 0.486868 | 3_4:-68011038 | Msa0516510:CDS |
| CAGAGGGACGAGTGCAGGAA+GGG | 0.487738 | 3_4:+68011256 | None:intergenic |
| GAATATGTGGGTGATACCAC+TGG | 0.488697 | 3_4:-68011317 | Msa0516510:CDS |
| TGCAAAGGTCAGTGATGCAT+TGG | 0.488912 | 3_4:+68009334 | None:intergenic |
| CAACAGTTACGGCACAAACT+TGG | 0.489107 | 3_4:+68010217 | None:intergenic |
| GTCCCTAATGTTGCTGAGAA+AGG | 0.491608 | 3_4:-68010798 | Msa0516510:CDS |
| CGGCGACATATGCAGGGCAT+TGG | 0.493884 | 3_4:-68010187 | Msa0516510:CDS |
| GAGAGAAGAAGAGCGAAGGA+AGG | 0.498995 | 3_4:+68013640 | None:intergenic |
| AGAATATTACCAAACCAGAT+TGG | 0.501979 | 3_4:-68011085 | Msa0516510:CDS |
| GTTGATAGCCGAAAGTTGGC+AGG | 0.503864 | 3_4:-68012049 | Msa0516510:CDS |
| CTGTGATGTTATATATGTCC+TGG | 0.504029 | 3_4:+68011432 | None:intergenic |
| GGTCTTGATCAACAACCTCA+TGG | 0.504483 | 3_4:+68011717 | None:intergenic |
| TGGCACACCTATTATTAATG+AGG | 0.506178 | 3_4:-68010868 | Msa0516510:CDS |
| GCGATGAAGATACCTGAAAT+CGG | 0.506359 | 3_4:+68013573 | None:intergenic |
| GAGCACTGAGCATAAATGGT+AGG | 0.506623 | 3_4:+68010976 | None:intergenic |
| CCTCTCTTGTACTTGACGCT+CGG | 0.507603 | 3_4:-68011901 | Msa0516510:CDS |
| GGTGATATAGCACTAGCTAT+AGG | 0.507802 | 3_4:-68010057 | Msa0516510:CDS |
| GCCGACTACACCAACAGTTA+CGG | 0.508961 | 3_4:+68010206 | None:intergenic |
| GTTGCTTGCTTGACATGAGC+AGG | 0.509107 | 3_4:+68011776 | None:intergenic |
| GCATATTCTGGGATCTTCCA+AGG | 0.514404 | 3_4:-68009901 | Msa0516510:CDS |
| ATCTGCCGAATGGGCCAAGT+TGG | 0.515537 | 3_4:-68009545 | Msa0516510:CDS |
| AGCTAGCATGGCCTCCTCAT+GGG | 0.516971 | 3_4:+68010338 | None:intergenic |
| TGATGCATTCTTGAACGTAC+TGG | 0.518086 | 3_4:+68009296 | None:intergenic |
| ACTTGTAATGCCTTTCATTG+AGG | 0.519790 | 3_4:-68011108 | Msa0516510:CDS |
| CCACACATCAGGCTTTGACT+TGG | 0.521208 | 3_4:-68009968 | Msa0516510:CDS |
| TGTCAGACTTGCTGCTGCCA+GGG | 0.521590 | 3_4:-68011633 | Msa0516510:CDS |
| ATGGCAGGTGGTACATGCCT+TGG | 0.523405 | 3_4:-68011167 | Msa0516510:CDS |
| AGCATGCTGAAGAAAGTCTT+CGG | 0.523420 | 3_4:-68012144 | Msa0516510:CDS |
| GGATATTAGAGGCATATTCT+GGG | 0.524280 | 3_4:-68009912 | Msa0516510:CDS |
| GTGTCTTTAACATGGTTGCT+TGG | 0.524596 | 3_4:+68010942 | None:intergenic |
| GGTGTGTCGAGGTGGGTCGT+GGG | 0.526216 | 3_4:-68009445 | Msa0516510:three_prime_UTR |
| ACCAGTTGATAGCCGAAAGT+TGG | 0.526677 | 3_4:-68012053 | Msa0516510:CDS |
| GTAATATTCTCCTCAATGAA+AGG | 0.527093 | 3_4:+68011098 | None:intergenic |
| TCTGTGGGTGACAGTGAGAA+GGG | 0.528574 | 3_4:+68010686 | None:intergenic |
| TAGCTAGCATGGCCTCCTCA+TGG | 0.530327 | 3_4:+68010337 | None:intergenic |
| AAGAGCGAAGGAAGGAAGGA+AGG | 0.530445 | 3_4:+68013648 | None:intergenic |
| ATCACCAATGCATGAAAACA+AGG | 0.531126 | 3_4:+68010074 | None:intergenic |
| TGATATCTTGGAAGAATATG+TGG | 0.534358 | 3_4:-68011330 | Msa0516510:CDS |
| GAAAGAGAGACCAAGAAACC+AGG | 0.534523 | 3_4:+68012100 | None:intergenic |
| CAAGCAACTTTGGAGACTCT+GGG | 0.535824 | 3_4:-68011761 | Msa0516510:CDS |
| AAAACAGCCATTGGTGTCGT+TGG | 0.535827 | 3_4:-68009679 | Msa0516510:CDS |
| AGTAATGTTTCCAACAGCAG+AGG | 0.542094 | 3_4:+68011239 | None:intergenic |
| TACTTTCAGTTGTCTGACCA+TGG | 0.542225 | 3_4:+68009401 | None:intergenic |
| CAGTCATTATTCAGAAGCTA+GGG | 0.543317 | 3_4:-68010452 | Msa0516510:CDS |
| GAGATCTGAAAGAGTAGCGA+GGG | 0.545164 | 3_4:+68013600 | None:intergenic |
| AACATTACTCAAACAAGAAG+AGG | 0.546231 | 3_4:-68011225 | Msa0516510:CDS |
| GTCATTAGACACTGCAGCGA+AGG | 0.546662 | 3_4:-68011957 | Msa0516510:CDS |
| GGACATCCTTCATGCTCTGA+AGG | 0.549506 | 3_4:+68010817 | None:intergenic |
| GGCACACCTATTATTAATGA+GGG | 0.549827 | 3_4:-68010867 | Msa0516510:CDS |
| ACACCACTGCTTGGACTTTG+GGG | 0.550181 | 3_4:-68010923 | Msa0516510:CDS |
| TTCCCACATCCTCATAACCC+TGG | 0.550647 | 3_4:+68010751 | None:intergenic |
| ATGTTAAAGACACCACTGCT+TGG | 0.550791 | 3_4:-68010932 | Msa0516510:CDS |
| CACATAATACATGGCCGCAA+TGG | 0.551428 | 3_4:+68011472 | None:intergenic |
| AGACACTGCAGCGAAGGCCC+AGG | 0.552156 | 3_4:-68011951 | Msa0516510:CDS |
| GCCGTAACTGTTGGTGTAGT+CGG | 0.552927 | 3_4:-68010207 | Msa0516510:CDS |
| TGCATTTGGGTGTGTCGAGG+TGG | 0.554275 | 3_4:-68009453 | Msa0516510:three_prime_UTR |
| ACTAGTTTCTGTCATCATGA+TGG | 0.555623 | 3_4:-68010565 | Msa0516510:CDS |
| CTGTCAAGCACCCACAAAGA+AGG | 0.556847 | 3_4:+68010472 | None:intergenic |
| CTCCGTAGCATCCTCTCTGT+GGG | 0.557611 | 3_4:+68010671 | None:intergenic |
| CATTTGGCTCTATCTTGGAG+GGG | 0.558186 | 3_4:-68011037 | Msa0516510:CDS |
| GAGGATCAAGATCTGGATGA+AGG | 0.560543 | 3_4:-68011206 | Msa0516510:CDS |
| TATCCAAGAACTGGAGAATG+TGG | 0.561174 | 3_4:+68009833 | None:intergenic |
| AAGGGCTCCAATAGCTAGCA+TGG | 0.562861 | 3_4:+68010326 | None:intergenic |
| GAAGTTGGCTCCTTACATCC+AGG | 0.563506 | 3_4:-68011450 | Msa0516510:CDS |
| TCCCACATCCTCATAACCCT+GGG | 0.563687 | 3_4:+68010752 | None:intergenic |
| AGCATAAGGAATCAAGATCT+GGG | 0.564981 | 3_4:+68009858 | None:intergenic |
| AGCGGGAATTGGTTCAGAGA+TGG | 0.567281 | 3_4:-68011982 | Msa0516510:CDS |
| TTTCTTGGTCTCTCTTTCTG+GGG | 0.568371 | 3_4:-68012095 | Msa0516510:CDS |
| CATAGCGATGGAAGTTACTC+AGG | 0.569430 | 3_4:-68012206 | Msa0516510:exon |
| ATGAGAGAGAAGAAGAGCGA+AGG | 0.571053 | 3_4:+68013636 | None:intergenic |
| AATGTTGCTGAGAAAGGCTG+TGG | 0.571738 | 3_4:-68010792 | Msa0516510:CDS |
| AGTTCTCCTTCAGAGCATGA+AGG | 0.572114 | 3_4:-68010823 | Msa0516510:CDS |
| AGTTCAGGCCACTGTTTCTG+AGG | 0.572502 | 3_4:+68011833 | None:intergenic |
| GCAGAGGGACGAGTGCAGGA+AGG | 0.572612 | 3_4:+68011255 | None:intergenic |
| GAAACTTGTAAAATTCAGGC+AGG | 0.572839 | 3_4:+68010271 | None:intergenic |
| CAAGGATGAAAACAGAAAGC+GGG | 0.572936 | 3_4:-68011999 | Msa0516510:CDS |
| GTTCTTGGATAGCATATACA+TGG | 0.572950 | 3_4:-68009821 | Msa0516510:CDS |
| TGATTAAAGAATCTGCCGAA+TGG | 0.574297 | 3_4:-68009555 | Msa0516510:CDS |
| CCAAACCAGATTGGAGACAG+AGG | 0.578424 | 3_4:-68011076 | Msa0516510:CDS |
| CATATTCTGGGATCTTCCAA+GGG | 0.579806 | 3_4:-68009900 | Msa0516510:CDS |
| TAATGCTCTCGAATTTGCGC+AGG | 0.579901 | 3_4:-68011603 | Msa0516510:CDS |
| ACTCCGTAGCATCCTCTCTG+TGG | 0.580534 | 3_4:+68010670 | None:intergenic |
| CAAGTCAAAGCCTGATGTGT+GGG | 0.580869 | 3_4:+68009969 | None:intergenic |
| GCATTTGGGTGTGTCGAGGT+GGG | 0.581701 | 3_4:-68009452 | Msa0516510:three_prime_UTR |
| ATCCAAGAACTGGAGAATGT+GGG | 0.582057 | 3_4:+68009834 | None:intergenic |
| GGTACTAATTTGTCTGGAGA+AGG | 0.583117 | 3_4:+68011014 | None:intergenic |
| CAGGGCCTATCGCATAGGCA+AGG | 0.584847 | 3_4:+68010307 | None:intergenic |
| GGTACTCCTCAAAATTCTGA+AGG | 0.586729 | 3_4:+68010238 | None:intergenic |
| CAATCGCAAGTAGAGATGCC+AGG | 0.587827 | 3_4:+68013682 | None:intergenic |
| GGAGCCCTTGCCTATGCGAT+AGG | 0.588549 | 3_4:-68010312 | Msa0516510:CDS |
| TGAATGTTTGGTCTCCATTG+CGG | 0.588682 | 3_4:-68011486 | Msa0516510:CDS |
| AGCCAACTTCACATAATACA+TGG | 0.590438 | 3_4:+68011463 | None:intergenic |
| TCATAATCCCATCACAGTAA+GGG | 0.590523 | 3_4:+68010151 | None:intergenic |
| AGCACTGAGCATAAATGGTA+GGG | 0.592192 | 3_4:+68010977 | None:intergenic |
| AAGATCTGGATGAAGGTGCA+TGG | 0.593145 | 3_4:-68011199 | Msa0516510:CDS |
| AAAATCAGGGCCTATCGCAT+AGG | 0.593832 | 3_4:+68010302 | None:intergenic |
| AGGGCCTATCGCATAGGCAA+GGG | 0.594941 | 3_4:+68010308 | None:intergenic |
| TCTGAAAGAGTAGCGAGGGA+AGG | 0.596629 | 3_4:+68013604 | None:intergenic |
| TTTAATCATATGATCATCTG+AGG | 0.597486 | 3_4:+68009570 | None:intergenic |
| GGCCATGTATTATGTGAAGT+TGG | 0.601747 | 3_4:-68011465 | Msa0516510:CDS |
| ATTGTTATGAAAACAGCCAT+TGG | 0.603401 | 3_4:-68009688 | Msa0516510:CDS |
| TTAAGTCCAGTACTTTCAAG+AGG | 0.603890 | 3_4:-68009252 | None:intergenic |
| GAGAGCATTATACAATGCCC+TGG | 0.604361 | 3_4:+68011616 | None:intergenic |
| CCACTGCTTGGACTTTGGGG+CGG | 0.604774 | 3_4:-68010920 | Msa0516510:CDS |
| CATTTCTACAAGCAAAGACC+CGG | 0.606986 | 3_4:+68010367 | None:intergenic |
| GCATGGAATATTGCAATGGC+AGG | 0.607121 | 3_4:-68011182 | Msa0516510:CDS |
| CCGAGCGTCAAGTACAAGAG+AGG | 0.607157 | 3_4:+68011901 | None:intergenic |
| AAGCAGTGGTGTCTTTAACA+TGG | 0.611461 | 3_4:+68010934 | None:intergenic |
| GATAATGGGACTATTCATCC+GGG | 0.613080 | 3_4:-68010385 | Msa0516510:CDS |
| CACCAATGCATGAAAACAAG+GGG | 0.613111 | 3_4:+68010076 | None:intergenic |
| CAAGTTTGTGCCGTAACTGT+TGG | 0.613695 | 3_4:-68010216 | Msa0516510:CDS |
| TCACCAATGCATGAAAACAA+GGG | 0.614256 | 3_4:+68010075 | None:intergenic |
| GCAGGTATTTAGCAAAATCA+GGG | 0.614526 | 3_4:+68010289 | None:intergenic |
| CCAAGGATGAAAACAGAAAG+CGG | 0.615724 | 3_4:-68012000 | Msa0516510:CDS |
| ATGCAAGTAGTTTATGACAA+AGG | 0.616263 | 3_4:+68009475 | None:intergenic |
| TATGCTCAGTGCTCTAGTGA+AGG | 0.618237 | 3_4:-68010967 | Msa0516510:CDS |
| AAGCAAACATGCCTTAACCT+GGG | 0.618785 | 3_4:+68011934 | None:intergenic |
| AATATGTGGGTGATACCACT+GGG | 0.618894 | 3_4:-68011316 | Msa0516510:CDS |
| ACTTAATGGTGCTCATGCAA+AGG | 0.619089 | 3_4:+68009319 | None:intergenic |
| CACCCACAGAGAGGATGCTA+CGG | 0.620015 | 3_4:-68010673 | Msa0516510:CDS |
| TGCAAGAGAACATATTTGGT+AGG | 0.622823 | 3_4:+68010420 | None:intergenic |
| TAGAAATGCCACTGCCCATG+AGG | 0.623921 | 3_4:-68010352 | Msa0516510:CDS |
| TCCAAGAACTGGAGAATGTG+GGG | 0.625954 | 3_4:+68009835 | None:intergenic |
| CCAAGTCAAAGCCTGATGTG+TGG | 0.626187 | 3_4:+68009968 | None:intergenic |
| CATATATAACATCACAGCAA+AGG | 0.628146 | 3_4:-68011426 | Msa0516510:CDS |
| TAGATCTCCAACGACACCAA+TGG | 0.633027 | 3_4:+68009672 | None:intergenic |
| GAGAGGATGCTACGGAGTCA+CGG | 0.633129 | 3_4:-68010665 | Msa0516510:CDS |
| GTAATGTTTCCAACAGCAGA+GGG | 0.633616 | 3_4:+68011240 | None:intergenic |
| GAGAGACCAAGAAACCAGGA+AGG | 0.634178 | 3_4:+68012104 | None:intergenic |
| CATGTGTCAAATTGTCTCCA+TGG | 0.634249 | 3_4:-68009418 | Msa0516510:three_prime_UTR |
| GAAACTAGTTGCAACACCAA+AGG | 0.635429 | 3_4:+68010579 | None:intergenic |
| AAAGGCTGTTAGGAGTGATG+AGG | 0.635593 | 3_4:-68011408 | Msa0516510:CDS |
| GCATGCATTTGGGTGTGTCG+AGG | 0.637611 | 3_4:-68009456 | Msa0516510:three_prime_UTR |
| AAATGCCACTGCCCATGAGG+AGG | 0.637700 | 3_4:-68010349 | Msa0516510:CDS |
| TCTTGATCAACAACCTCATG+GGG | 0.640057 | 3_4:+68011719 | None:intergenic |
| TGGAATATTGCAATGGCAGG+TGG | 0.641007 | 3_4:-68011179 | Msa0516510:CDS |
| GGAGATCTAGCTGATACACT+TGG | 0.641148 | 3_4:-68009658 | Msa0516510:CDS |
| TTGAGCTTCCTCAGAAACAG+TGG | 0.646805 | 3_4:-68011841 | Msa0516510:CDS |
| TGTAGTCGGCGACATATGCA+GGG | 0.652462 | 3_4:-68010193 | Msa0516510:CDS |
| GACTCTGGGGTATTTGTGTG+AGG | 0.657648 | 3_4:-68011747 | Msa0516510:CDS |
| CAAACCAGATTGGAGACAGA+GGG | 0.659105 | 3_4:-68011075 | Msa0516510:CDS |
| GCCCAGGGTTATGAGGATGT+GGG | 0.661982 | 3_4:-68010753 | Msa0516510:CDS |
| AGAGATCTGAAAGAGTAGCG+AGG | 0.664338 | 3_4:+68013599 | None:intergenic |
| TCAATGAAAGGCATTACAAG+TGG | 0.666073 | 3_4:+68011110 | None:intergenic |
| GATATCTTGGAAGAATATGT+GGG | 0.670018 | 3_4:-68011329 | Msa0516510:CDS |
| CATCAGGTATAGCATAGCGA+TGG | 0.670697 | 3_4:-68012218 | Msa0516510:intron |
| ACCCTGGGCGAGAAAATACA+GGG | 0.671132 | 3_4:+68010767 | None:intergenic |
| CCGCCCCAAAGTCCAAGCAG+TGG | 0.671300 | 3_4:+68010920 | None:intergenic |
| GAAACAAAACGAGTATGACC+TGG | 0.672463 | 3_4:-68013700 | None:intergenic |
| GGTAGGGCGTGATTAACAAG+AGG | 0.685210 | 3_4:+68010993 | None:intergenic |
| ACCAATGCATGAAAACAAGG+GGG | 0.694702 | 3_4:+68010077 | None:intergenic |
| CCAATGCATGAAAACAAGGG+GGG | 0.695534 | 3_4:+68010078 | None:intergenic |
| AAGCAACTTTGGAGACTCTG+GGG | 0.702950 | 3_4:-68011760 | Msa0516510:CDS |
| AGGTGCATGGAATATTGCAA+TGG | 0.707284 | 3_4:-68011186 | Msa0516510:CDS |
| TAGTACGAGCAACTAAACCA+AGG | 0.708913 | 3_4:+68011150 | None:intergenic |
| TCTCACTGTCACCCACAGAG+AGG | 0.716309 | 3_4:-68010682 | Msa0516510:CDS |
| CTTGATCAACAACCTCATGG+GGG | 0.733599 | 3_4:+68011720 | None:intergenic |
| AGGAAGGAAGGAAGGAACAG+CGG | 0.735032 | 3_4:+68013656 | None:intergenic |
| AGGTATATCAGAGTCCCCAG+TGG | 0.773955 | 3_4:+68011301 | None:intergenic |
| ATATGTGGGTGATACCACTG+GGG | 0.840024 | 3_4:-68011315 | Msa0516510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTAAATCCTAAAATTT+CGG | - | chr3_4:68009815-68009834 | Msa0516510:CDS | 10.0% |
| !!! | ATACAAAATATGTTATTTAA+TGG | + | chr3_4:68010169-68010188 | None:intergenic | 10.0% |
| !! | ATTTATTAACTGTAAAATAA+TGG | - | chr3_4:68010601-68010620 | Msa0516510:CDS | 10.0% |
| !! | TAAAAATTAAGAAAAACAAA+AGG | + | chr3_4:68010662-68010681 | None:intergenic | 10.0% |
| !!! | AATTTTTTTTTACTTTAAAG+TGG | - | chr3_4:68010681-68010700 | Msa0516510:CDS | 10.0% |
| !! | ATAGTATTTATGAAATTACA+TGG | - | chr3_4:68009647-68009666 | Msa0516510:CDS | 15.0% |
| !! | TTATTAAATCCTAAAATTTC+GGG | - | chr3_4:68009816-68009835 | Msa0516510:CDS | 15.0% |
| !!! | TCATTTTTTCAAATTTTTAC+CGG | - | chr3_4:68009944-68009963 | Msa0516510:CDS | 15.0% |
| !! | TATTGCTATGAAAATTAAAT+TGG | + | chr3_4:68013188-68013207 | None:intergenic | 15.0% |
| !!! | AATTTTTGTTTATGCGATTT+AGG | - | chr3_4:68009471-68009490 | Msa0516510:three_prime_UTR | 20.0% |
| !! | ATTTATGAAATTACATGGAA+TGG | - | chr3_4:68009652-68009671 | Msa0516510:CDS | 20.0% |
| !!! | GAATAGTTATTTATTTTCTG+TGG | - | chr3_4:68009715-68009734 | Msa0516510:intron | 20.0% |
| !! | GAAACATATTTGATGTTAAT+AGG | - | chr3_4:68010092-68010111 | Msa0516510:CDS | 20.0% |
| !!! | AAATGTTTTTAATGATTCGA+CGG | - | chr3_4:68010417-68010436 | Msa0516510:CDS | 20.0% |
| !! | AACAAAGCAATATATAAAGA+TGG | + | chr3_4:68010544-68010563 | None:intergenic | 20.0% |
| !! | TTTGATACTTAAAAATGCAT+TGG | - | chr3_4:68010922-68010941 | Msa0516510:CDS | 20.0% |
| !!! | CAGTAAGAATTTTATTTACT+TGG | + | chr3_4:68011255-68011274 | None:intergenic | 20.0% |
| !! | TGCTTAATGAAATAAAAACA+AGG | + | chr3_4:68011670-68011689 | None:intergenic | 20.0% |
| ! | TAACACCAGAAAAGTAAAAT+CGG | + | chr3_4:68009440-68009459 | None:intergenic | 25.0% |
| !!! | TTGGACAGTTTTAATTTATC+AGG | - | chr3_4:68009693-68009712 | Msa0516510:CDS | 25.0% |
| !! | TGATTAGATGAAGTGAATTT+TGG | - | chr3_4:68009785-68009804 | Msa0516510:intron | 25.0% |
| ! | CTTCAAGGTTAATATCATAT+TGG | - | chr3_4:68010035-68010054 | Msa0516510:CDS | 25.0% |
| !! | GTAAAAAGTTTTTACACTGT+CGG | - | chr3_4:68010343-68010362 | Msa0516510:CDS | 25.0% |
| !!! | AATGTTTTTAATGATTCGAC+GGG | - | chr3_4:68010418-68010437 | Msa0516510:CDS | 25.0% |
| ! | GTAAAATTTCATTACACTGA+CGG | - | chr3_4:68010458-68010477 | Msa0516510:CDS | 25.0% |
| ! | ATTCTTATAAAATTCTCCGA+CGG | - | chr3_4:68010495-68010514 | Msa0516510:CDS | 25.0% |
| !! | AGTATATTGTTGTTATAGTG+TGG | - | chr3_4:68010518-68010537 | Msa0516510:CDS | 25.0% |
| !!! | GAGAACTGTAATAATTTGTT+GGG | + | chr3_4:68012112-68012131 | None:intergenic | 25.0% |
| ! | TGAACAATTTCCTGAAAAAA+GGG | + | chr3_4:68012240-68012259 | None:intergenic | 25.0% |
| ! | TTGAACAATTTCCTGAAAAA+AGG | + | chr3_4:68012241-68012260 | None:intergenic | 25.0% |
| ! | TCAAGAAACTTGTAAAATTC+AGG | + | chr3_4:68012684-68012703 | None:intergenic | 25.0% |
| !! | TACATTAACTCTTTGAGAAA+TGG | - | chr3_4:68013014-68013033 | Msa0516510:intron | 25.0% |
| !! | ACATTAACTCTTTGAGAAAT+GGG | - | chr3_4:68013015-68013034 | Msa0516510:intron | 25.0% |
| ! | TTTAATCATATGATCATCTG+AGG | + | chr3_4:68013381-68013400 | None:intergenic | 25.0% |
| ! | TAGATTGCTTTGATTCGATA+CGG | - | chr3_4:68009503-68009522 | Msa0516510:exon | 30.0% |
| ACTAGTATTCGATCTATCAT+CGG | - | chr3_4:68009562-68009581 | Msa0516510:CDS | 30.0% | |
| CGCACAAATTCAATATCAAA+GGG | + | chr3_4:68009608-68009627 | None:intergenic | 30.0% | |
| TCGCACAAATTCAATATCAA+AGG | + | chr3_4:68009609-68009628 | None:intergenic | 30.0% | |
| GTTCCATTCATACAAGTATT+TGG | - | chr3_4:68009674-68009693 | Msa0516510:CDS | 30.0% | |
| TGTCCAAATACTTGTATGAA+TGG | + | chr3_4:68009680-68009699 | None:intergenic | 30.0% | |
| ! | GATGAAGTGAATTTTGGATT+TGG | - | chr3_4:68009791-68009810 | Msa0516510:intron | 30.0% |
| AAATCCTAAAATTTCGGGAT+CGG | - | chr3_4:68009821-68009840 | Msa0516510:CDS | 30.0% | |
| TTACATGTAATCACATGTGT+AGG | + | chr3_4:68009919-68009938 | None:intergenic | 30.0% | |
| GTTAATAGGTGTTCTCAATA+TGG | - | chr3_4:68010106-68010125 | Msa0516510:CDS | 30.0% | |
| AATATAGTCATATGACAGTG+TGG | + | chr3_4:68010267-68010286 | None:intergenic | 30.0% | |
| ! | TACTTCTAAAGACGCATATA+TGG | + | chr3_4:68010383-68010402 | None:intergenic | 30.0% |
| !!! | ATGCGTCTTTAGAAGTATTT+TGG | - | chr3_4:68010386-68010405 | Msa0516510:CDS | 30.0% |
| ATAACAACAATATACTCCGT+CGG | + | chr3_4:68010514-68010533 | None:intergenic | 30.0% | |
| AGGAGTCTATAATATTGAAG+AGG | + | chr3_4:68010627-68010646 | None:intergenic | 30.0% | |
| AGAAAAACAAAAGGCAAAAC+AGG | + | chr3_4:68010653-68010672 | None:intergenic | 30.0% | |
| !! | GGCTAATTTTAGCAATGATA+TGG | - | chr3_4:68011366-68011385 | Msa0516510:CDS | 30.0% |
| TTATATATGTCCTGGATGTA+AGG | + | chr3_4:68011511-68011530 | None:intergenic | 30.0% | |
| CATATATAACATCACAGCAA+AGG | - | chr3_4:68011522-68011541 | Msa0516510:CDS | 30.0% | |
| AATTGTACTCCAGAATTCAA+TGG | + | chr3_4:68011584-68011603 | None:intergenic | 30.0% | |
| TGATATCTTGGAAGAATATG+TGG | - | chr3_4:68011618-68011637 | Msa0516510:CDS | 30.0% | |
| GATATCTTGGAAGAATATGT+GGG | - | chr3_4:68011619-68011638 | Msa0516510:CDS | 30.0% | |
| AACATTACTCAAACAAGAAG+AGG | - | chr3_4:68011723-68011742 | Msa0516510:CDS | 30.0% | |
| GTAATATTCTCCTCAATGAA+AGG | + | chr3_4:68011853-68011872 | None:intergenic | 30.0% | |
| AGAATATTACCAAACCAGAT+TGG | - | chr3_4:68011863-68011882 | Msa0516510:CDS | 30.0% | |
| TTTCTTCACAGTTCAATTGT+TGG | - | chr3_4:68012060-68012079 | Msa0516510:CDS | 30.0% | |
| GCATTTCCCTCATTAATAAT+AGG | + | chr3_4:68012090-68012109 | None:intergenic | 30.0% | |
| ! | GGAGAACTGTAATAATTTGT+TGG | + | chr3_4:68012113-68012132 | None:intergenic | 30.0% |
| GAAAAACAGAGTGAACTTAT+AGG | - | chr3_4:68012453-68012472 | Msa0516510:intron | 30.0% | |
| ATACTGCAAGAGAACATATT+TGG | + | chr3_4:68012535-68012554 | None:intergenic | 30.0% | |
| AAAATATTCCCTTACTGTGA+TGG | - | chr3_4:68012789-68012808 | Msa0516510:intron | 30.0% | |
| AAATATTCCCTTACTGTGAT+GGG | - | chr3_4:68012790-68012809 | Msa0516510:intron | 30.0% | |
| TTTGAGAAATGGGATATTAG+AGG | - | chr3_4:68013025-68013044 | Msa0516510:intron | 30.0% | |
| TTGATGAATTCTTAAACCCT+TGG | + | chr3_4:68013067-68013086 | None:intergenic | 30.0% | |
| ATTGTTATGAAAACAGCCAT+TGG | - | chr3_4:68013260-68013279 | Msa0516510:intron | 30.0% | |
| TGACAAAGACTGTTGAATTA+AGG | + | chr3_4:68013330-68013349 | None:intergenic | 30.0% | |
| ATGCAAGTAGTTTATGACAA+AGG | + | chr3_4:68013476-68013495 | None:intergenic | 30.0% | |
| ATAAACTACTTGCATGCATT+TGG | - | chr3_4:68013481-68013500 | Msa0516510:intron | 30.0% | |
| TAAACTACTTGCATGCATTT+GGG | - | chr3_4:68013482-68013501 | Msa0516510:intron | 30.0% | |
| !! | AACTGAAAGTATCTGTTTGA+AGG | - | chr3_4:68013559-68013578 | Msa0516510:intron | 30.0% |
| GAAAAAGGAAGAACGTAGAT+CGG | + | chr3_4:68009405-68009424 | None:intergenic | 35.0% | |
| CCAGAAAAGTAAAATCGGAA+GGG | + | chr3_4:68009435-68009454 | None:intergenic | 35.0% | |
| ACCAGAAAAGTAAAATCGGA+AGG | + | chr3_4:68009436-68009455 | None:intergenic | 35.0% | |
| !! | ACGGTTAGTTTATGATCGAT+TGG | - | chr3_4:68009522-68009541 | Msa0516510:CDS | 35.0% |
| ! | AACGTAGTAGGACTAAGTTT+TGG | - | chr3_4:68009850-68009869 | Msa0516510:CDS | 35.0% |
| AACCTTGAAGCTATAAAGCA+CGG | + | chr3_4:68010025-68010044 | None:intergenic | 35.0% | |
| !!! | TTGTCGTTTGTCTTTTTTCC+TGG | - | chr3_4:68010230-68010249 | Msa0516510:CDS | 35.0% |
| !! | TTGCTTTGTTTCTCTCCAAT+TGG | - | chr3_4:68010554-68010573 | Msa0516510:CDS | 35.0% |
| ACAAAAGGCAAAACAGGATA+AGG | + | chr3_4:68010647-68010666 | None:intergenic | 35.0% | |
| TTGAATGCTCAATCCATTGA+CGG | - | chr3_4:68010770-68010789 | Msa0516510:CDS | 35.0% | |
| TAAAAATGCATTGGATGCCA+AGG | - | chr3_4:68010931-68010950 | Msa0516510:CDS | 35.0% | |
| CAAGTTGTTGCTAAAATTGC+TGG | - | chr3_4:68011082-68011101 | Msa0516510:CDS | 35.0% | |
| AATAGTGATCCTATCAGTTC+AGG | + | chr3_4:68011133-68011152 | None:intergenic | 35.0% | |
| ATTCTTACTGCTGTAGTTCA+AGG | - | chr3_4:68011265-68011284 | Msa0516510:CDS | 35.0% | |
| TCCTGAATTGAAAATACGTC+TGG | - | chr3_4:68011432-68011451 | Msa0516510:CDS | 35.0% | |
| AGCCAACTTCACATAATACA+TGG | + | chr3_4:68011488-68011507 | None:intergenic | 35.0% | |
| CTGTGATGTTATATATGTCC+TGG | + | chr3_4:68011519-68011538 | None:intergenic | 35.0% | |
| TGATGAAGAGACTGATATCT+TGG | - | chr3_4:68011606-68011625 | Msa0516510:CDS | 35.0% | |
| !! | TCAATGAAAGGCATTACAAG+TGG | + | chr3_4:68011841-68011860 | None:intergenic | 35.0% |
| ACTTGTAATGCCTTTCATTG+AGG | - | chr3_4:68011840-68011859 | Msa0516510:CDS | 35.0% | |
| !! | ACAAGAGGTACTAATTTGTC+TGG | + | chr3_4:68011943-68011962 | None:intergenic | 35.0% |
| TGGCACACCTATTATTAATG+AGG | - | chr3_4:68012080-68012099 | Msa0516510:CDS | 35.0% | |
| GGCACACCTATTATTAATGA+GGG | - | chr3_4:68012081-68012100 | Msa0516510:CDS | 35.0% | |
| CTGAAAAAAGGGAGTTATAG+GGG | + | chr3_4:68012229-68012248 | None:intergenic | 35.0% | |
| CCTGAAAAAAGGGAGTTATA+GGG | + | chr3_4:68012230-68012249 | None:intergenic | 35.0% | |
| TCCTGAAAAAAGGGAGTTAT+AGG | + | chr3_4:68012231-68012250 | None:intergenic | 35.0% | |
| ! | ACTAGTTTCTGTCATCATGA+TGG | - | chr3_4:68012383-68012402 | Msa0516510:intron | 35.0% |
| AACTTATAGGCCTTCTTTGT+GGG | - | chr3_4:68012466-68012485 | Msa0516510:intron | 35.0% | |
| ACAGTCATTATTCAGAAGCT+AGG | - | chr3_4:68012495-68012514 | Msa0516510:intron | 35.0% | |
| CAGTCATTATTCAGAAGCTA+GGG | - | chr3_4:68012496-68012515 | Msa0516510:intron | 35.0% | |
| TGCAAGAGAACATATTTGGT+AGG | + | chr3_4:68012531-68012550 | None:intergenic | 35.0% | |
| CAGTATGCTGATCAGATAAT+GGG | - | chr3_4:68012549-68012568 | Msa0516510:intron | 35.0% | |
| !! | AGATAATGGGACTATTCATC+CGG | - | chr3_4:68012562-68012581 | Msa0516510:intron | 35.0% |
| GCAGGTATTTAGCAAAATCA+GGG | + | chr3_4:68012662-68012681 | None:intergenic | 35.0% | |
| GAAACTTGTAAAATTCAGGC+AGG | + | chr3_4:68012680-68012699 | None:intergenic | 35.0% | |
| ! | GATTGACCTTCAGAATTTTG+AGG | - | chr3_4:68012704-68012723 | Msa0516510:intron | 35.0% |
| TCATAATCCCATCACAGTAA+GGG | + | chr3_4:68012800-68012819 | None:intergenic | 35.0% | |
| TCACCAATGCATGAAAACAA+GGG | + | chr3_4:68012876-68012895 | None:intergenic | 35.0% | |
| ATCACCAATGCATGAAAACA+AGG | + | chr3_4:68012877-68012896 | None:intergenic | 35.0% | |
| ! | GGATATTAGAGGCATATTCT+GGG | - | chr3_4:68013036-68013055 | Msa0516510:intron | 35.0% |
| AGCATAAGGAATCAAGATCT+GGG | + | chr3_4:68013093-68013112 | None:intergenic | 35.0% | |
| TGTATATGCTATCCAAGAAC+TGG | + | chr3_4:68013127-68013146 | None:intergenic | 35.0% | |
| GTTCTTGGATAGCATATACA+TGG | - | chr3_4:68013127-68013146 | Msa0516510:intron | 35.0% | |
| !!! | TCATTGACTTTTCTTACTGC+AGG | - | chr3_4:68013231-68013250 | Msa0516510:intron | 35.0% |
| !!! | CATTGACTTTTCTTACTGCA+GGG | - | chr3_4:68013232-68013251 | Msa0516510:intron | 35.0% |
| TGATTAAAGAATCTGCCGAA+TGG | - | chr3_4:68013393-68013412 | Msa0516510:intron | 35.0% | |
| GATTAAAGAATCTGCCGAAT+GGG | - | chr3_4:68013394-68013413 | Msa0516510:intron | 35.0% | |
| AACAGATATAGCACGATTGA+TGG | + | chr3_4:68013429-68013448 | None:intergenic | 35.0% | |
| AATCGTGCTATATCTGTTTG+AGG | - | chr3_4:68013431-68013450 | Msa0516510:intron | 35.0% | |
| !! | CTTGAAAGTACTGGACTTAA+TGG | + | chr3_4:68013696-68013715 | None:intergenic | 35.0% |
| GCGATGAAGATACCTGAAAT+CGG | + | chr3_4:68009378-68009397 | None:intergenic | 40.0% | |
| CGGAAGGGAAATAACGAAAA+AGG | + | chr3_4:68009420-68009439 | None:intergenic | 40.0% | |
| !! | CCCTTCCGATTTTACTTTTC+TGG | - | chr3_4:68009432-68009451 | Msa0516510:three_prime_UTR | 40.0% |
| TCTGTGGTAGACAGAGATAT+CGG | - | chr3_4:68009731-68009750 | Msa0516510:intron | 40.0% | |
| CTAAAATTTCGGGATCGGTA+GGG | - | chr3_4:68009826-68009845 | Msa0516510:CDS | 40.0% | |
| GTATCGTGTCTGTGTAGTAT+CGG | + | chr3_4:68009897-68009916 | None:intergenic | 40.0% | |
| ATAAAGCACGGACACAAATG+CGG | + | chr3_4:68010013-68010032 | None:intergenic | 40.0% | |
| ! | TTGGCTTTCATCAAGTCTGT+TGG | - | chr3_4:68010054-68010073 | Msa0516510:CDS | 40.0% |
| AGATCCAGAGACTAACCAAT+TGG | + | chr3_4:68010572-68010591 | None:intergenic | 40.0% | |
| ACCTGATGGCACAGAATAAT+TGG | + | chr3_4:68010718-68010737 | None:intergenic | 40.0% | |
| AGCATGCTGAAGAAAGTCTT+CGG | - | chr3_4:68010804-68010823 | Msa0516510:CDS | 40.0% | |
| AGAAAGTCTTCGGCAATTTC+AGG | - | chr3_4:68010814-68010833 | Msa0516510:CDS | 40.0% | |
| GTTTCTTGGTCTCTCTTTCT+GGG | - | chr3_4:68010852-68010871 | Msa0516510:CDS | 40.0% | |
| TTTCTTGGTCTCTCTTTCTG+GGG | - | chr3_4:68010853-68010872 | Msa0516510:CDS | 40.0% | |
| GTATCAAACCTGCCAACTTT+CGG | + | chr3_4:68010910-68010929 | None:intergenic | 40.0% | |
| CCAAGGATGAAAACAGAAAG+CGG | - | chr3_4:68010948-68010967 | Msa0516510:CDS | 40.0% | |
| CAAGGATGAAAACAGAAAGC+GGG | - | chr3_4:68010949-68010968 | Msa0516510:CDS | 40.0% | |
| TGAAAACAGAAAGCGGGAAT+TGG | - | chr3_4:68010955-68010974 | Msa0516510:CDS | 40.0% | |
| AAGCAAACATGCCTTAACCT+GGG | + | chr3_4:68011017-68011036 | None:intergenic | 40.0% | |
| TCATGTCAAGCAAGCAACTT+TGG | - | chr3_4:68011177-68011196 | Msa0516510:CDS | 40.0% | |
| TCTTGATCAACAACCTCATG+GGG | + | chr3_4:68011232-68011251 | None:intergenic | 40.0% | |
| GTCTTGATCAACAACCTCAT+GGG | + | chr3_4:68011233-68011252 | None:intergenic | 40.0% | |
| ! | GCCAGACGTATTTTCAATTC+AGG | + | chr3_4:68011436-68011455 | None:intergenic | 40.0% |
| ! | TCTGGCAGCTTTTGAATGTT+TGG | - | chr3_4:68011450-68011469 | Msa0516510:CDS | 40.0% |
| TGAATGTTTGGTCTCCATTG+CGG | - | chr3_4:68011462-68011481 | Msa0516510:CDS | 40.0% | |
| GGCCATGTATTATGTGAAGT+TGG | - | chr3_4:68011483-68011502 | Msa0516510:CDS | 40.0% | |
| TACTCCAGAATTCAATGGCT+TGG | + | chr3_4:68011579-68011598 | None:intergenic | 40.0% | |
| AATATGTGGGTGATACCACT+GGG | - | chr3_4:68011632-68011651 | Msa0516510:CDS | 40.0% | |
| GTAATGTTTCCAACAGCAGA+GGG | + | chr3_4:68011711-68011730 | None:intergenic | 40.0% | |
| AGTAATGTTTCCAACAGCAG+AGG | + | chr3_4:68011712-68011731 | None:intergenic | 40.0% | |
| ACAAGAAGAGGATCAAGATC+TGG | - | chr3_4:68011735-68011754 | Msa0516510:CDS | 40.0% | |
| AGGTGCATGGAATATTGCAA+TGG | - | chr3_4:68011762-68011781 | Msa0516510:CDS | 40.0% | |
| TAGTACGAGCAACTAAACCA+AGG | + | chr3_4:68011801-68011820 | None:intergenic | 40.0% | |
| !! | GTATGCATTTGGCTCTATCT+TGG | - | chr3_4:68011906-68011925 | Msa0516510:CDS | 40.0% |
| ! | GGTACTAATTTGTCTGGAGA+AGG | + | chr3_4:68011937-68011956 | None:intergenic | 40.0% |
| ! | AGCACTGAGCATAAATGGTA+GGG | + | chr3_4:68011974-68011993 | None:intergenic | 40.0% |
| !! | ACTAGAGCACTGAGCATAAA+TGG | + | chr3_4:68011979-68011998 | None:intergenic | 40.0% |
| GTGTCTTTAACATGGTTGCT+TGG | + | chr3_4:68012009-68012028 | None:intergenic | 40.0% | |
| AAGCAGTGGTGTCTTTAACA+TGG | + | chr3_4:68012017-68012036 | None:intergenic | 40.0% | |
| ATGTTAAAGACACCACTGCT+TGG | - | chr3_4:68012016-68012035 | Msa0516510:CDS | 40.0% | |
| AGCCTTTCTCAGCAACATTA+GGG | + | chr3_4:68012155-68012174 | None:intergenic | 40.0% | |
| !!! | CCCTATAACTCCCTTTTTTC+AGG | - | chr3_4:68012227-68012246 | Msa0516510:intron | 40.0% |
| AACAGATGAAACAGCTCCTT+TGG | - | chr3_4:68012353-68012372 | Msa0516510:intron | 40.0% | |
| GAAACTAGTTGCAACACCAA+AGG | + | chr3_4:68012372-68012391 | None:intergenic | 40.0% | |
| GAACTTATAGGCCTTCTTTG+TGG | - | chr3_4:68012465-68012484 | Msa0516510:intron | 40.0% | |
| GCAGTATGCTGATCAGATAA+TGG | - | chr3_4:68012548-68012567 | Msa0516510:intron | 40.0% | |
| !! | GATAATGGGACTATTCATCC+GGG | - | chr3_4:68012563-68012582 | Msa0516510:intron | 40.0% |
| CATTTCTACAAGCAAAGACC+CGG | + | chr3_4:68012584-68012603 | None:intergenic | 40.0% | |
| GGCAGGTATTTAGCAAAATC+AGG | + | chr3_4:68012663-68012682 | None:intergenic | 40.0% | |
| GGTACTCCTCAAAATTCTGA+AGG | + | chr3_4:68012713-68012732 | None:intergenic | 40.0% | |
| GTCATAATCCCATCACAGTA+AGG | + | chr3_4:68012801-68012820 | None:intergenic | 40.0% | |
| ACCAATGCATGAAAACAAGG+GGG | + | chr3_4:68012874-68012893 | None:intergenic | 40.0% | |
| CACCAATGCATGAAAACAAG+GGG | + | chr3_4:68012875-68012894 | None:intergenic | 40.0% | |
| GGTGATATAGCACTAGCTAT+AGG | - | chr3_4:68012891-68012910 | Msa0516510:intron | 40.0% | |
| ! | GGGATATTAGAGGCATATTC+TGG | - | chr3_4:68013035-68013054 | Msa0516510:intron | 40.0% |
| !! | CATATTCTGGGATCTTCCAA+GGG | - | chr3_4:68013048-68013067 | Msa0516510:intron | 40.0% |
| GAGCATAAGGAATCAAGATC+TGG | + | chr3_4:68013094-68013113 | None:intergenic | 40.0% | |
| ATCCAAGAACTGGAGAATGT+GGG | + | chr3_4:68013117-68013136 | None:intergenic | 40.0% | |
| TATCCAAGAACTGGAGAATG+TGG | + | chr3_4:68013118-68013137 | None:intergenic | 40.0% | |
| CATGTGTCAAATTGTCTCCA+TGG | - | chr3_4:68013530-68013549 | Msa0516510:intron | 40.0% | |
| TACTTTCAGTTGTCTGACCA+TGG | + | chr3_4:68013550-68013569 | None:intergenic | 40.0% | |
| ATGCAAGAGTTAGTGACAAC+TGG | + | chr3_4:68013589-68013608 | None:intergenic | 40.0% | |
| ACTTAATGGTGCTCATGCAA+AGG | + | chr3_4:68013632-68013651 | None:intergenic | 40.0% | |
| CTTGAACGTACTGGACTTAA+TGG | + | chr3_4:68013646-68013665 | None:intergenic | 40.0% | |
| TGATGCATTCTTGAACGTAC+TGG | + | chr3_4:68013655-68013674 | None:intergenic | 40.0% | |
| ATGAGAGAGAAGAAGAGCGA+AGG | + | chr3_4:68009315-68009334 | None:intergenic | 45.0% | |
| GAGATCTGAAAGAGTAGCGA+GGG | + | chr3_4:68009351-68009370 | None:intergenic | 45.0% | |
| AGAGATCTGAAAGAGTAGCG+AGG | + | chr3_4:68009352-68009371 | None:intergenic | 45.0% | |
| CAGATCTCTTCTCCGATTTC+AGG | - | chr3_4:68009363-68009382 | Msa0516510:three_prime_UTR | 45.0% | |
| ATCGGCGGGTGTGAATAAAT+AGG | - | chr3_4:68009749-68009768 | Msa0516510:intron | 45.0% | |
| ! | CCTACCGATCCCGAAATTTT+AGG | + | chr3_4:68009828-68009847 | None:intergenic | 45.0% |
| CCTAAAATTTCGGGATCGGT+AGG | - | chr3_4:68009825-68009844 | Msa0516510:CDS | 45.0% | |
| !!! | ACTAAGTTTTGGAGCCTTCG+AGG | - | chr3_4:68009861-68009880 | Msa0516510:CDS | 45.0% |
| GTCCGTGCTTTATAGCTTCA+AGG | - | chr3_4:68010020-68010039 | Msa0516510:CDS | 45.0% | |
| AGTGTGGTACGAAACAAACC+AGG | + | chr3_4:68010251-68010270 | None:intergenic | 45.0% | |
| !! | CTCTCCAATTGGTTAGTCTC+TGG | - | chr3_4:68010565-68010584 | Msa0516510:CDS | 45.0% |
| GCCAATTATTCTGTGCCATC+AGG | - | chr3_4:68010714-68010733 | Msa0516510:CDS | 45.0% | |
| CATCGCTATGCTATACCTGA+TGG | + | chr3_4:68010732-68010751 | None:intergenic | 45.0% | |
| CATCAGGTATAGCATAGCGA+TGG | - | chr3_4:68010730-68010749 | Msa0516510:CDS | 45.0% | |
| CATAGCGATGGAAGTTACTC+AGG | - | chr3_4:68010742-68010761 | Msa0516510:CDS | 45.0% | |
| CTTACGTACAGTTCCGTCAA+TGG | + | chr3_4:68010786-68010805 | None:intergenic | 45.0% | |
| TTTCAGGAGCAAAACCTTCC+TGG | - | chr3_4:68010830-68010849 | Msa0516510:CDS | 45.0% | |
| GCAAAACCTTCCTGGTTTCT+TGG | - | chr3_4:68010838-68010857 | Msa0516510:CDS | 45.0% | |
| GAAAGAGAGACCAAGAAACC+AGG | + | chr3_4:68010851-68010870 | None:intergenic | 45.0% | |
| GGTTTCTTGGTCTCTCTTTC+TGG | - | chr3_4:68010851-68010870 | Msa0516510:CDS | 45.0% | |
| !! | ACCAGTTGATAGCCGAAAGT+TGG | - | chr3_4:68010895-68010914 | Msa0516510:CDS | 45.0% |
| ! | CCGCTTTCTGTTTTCATCCT+TGG | + | chr3_4:68010951-68010970 | None:intergenic | 45.0% |
| GAAGCAAACATGCCTTAACC+TGG | + | chr3_4:68011018-68011037 | None:intergenic | 45.0% | |
| TTGAGCTTCCTCAGAAACAG+TGG | - | chr3_4:68011107-68011126 | Msa0516510:CDS | 45.0% | |
| AAACAGTGGCCTGAACTGAT+AGG | - | chr3_4:68011121-68011140 | Msa0516510:CDS | 45.0% | |
| ! | CAAGCAACTTTGGAGACTCT+GGG | - | chr3_4:68011187-68011206 | Msa0516510:CDS | 45.0% |
| ! | AAGCAACTTTGGAGACTCTG+GGG | - | chr3_4:68011188-68011207 | Msa0516510:CDS | 45.0% |
| CTTGATCAACAACCTCATGG+GGG | + | chr3_4:68011231-68011250 | None:intergenic | 45.0% | |
| GGTCTTGATCAACAACCTCA+TGG | + | chr3_4:68011234-68011253 | None:intergenic | 45.0% | |
| !! | GAGAGCATTATACAATGCCC+TGG | + | chr3_4:68011335-68011354 | None:intergenic | 45.0% |
| TAATGCTCTCGAATTTGCGC+AGG | - | chr3_4:68011345-68011364 | Msa0516510:CDS | 45.0% | |
| CACATAATACATGGCCGCAA+TGG | + | chr3_4:68011479-68011498 | None:intergenic | 45.0% | |
| ACATCACAGCAAAGGCTGTT+AGG | - | chr3_4:68011530-68011549 | Msa0516510:CDS | 45.0% | |
| AAAGGCTGTTAGGAGTGATG+AGG | - | chr3_4:68011540-68011559 | Msa0516510:CDS | 45.0% | |
| CTCTCCAAGCCATTGAATTC+TGG | - | chr3_4:68011572-68011591 | Msa0516510:CDS | 45.0% | |
| GAATATGTGGGTGATACCAC+TGG | - | chr3_4:68011631-68011650 | Msa0516510:CDS | 45.0% | |
| ATATGTGGGTGATACCACTG+GGG | - | chr3_4:68011633-68011652 | Msa0516510:CDS | 45.0% | |
| GAGGATCAAGATCTGGATGA+AGG | - | chr3_4:68011742-68011761 | Msa0516510:CDS | 45.0% | |
| ! | AAGATCTGGATGAAGGTGCA+TGG | - | chr3_4:68011749-68011768 | Msa0516510:CDS | 45.0% |
| GCATGGAATATTGCAATGGC+AGG | - | chr3_4:68011766-68011785 | Msa0516510:CDS | 45.0% | |
| TGGAATATTGCAATGGCAGG+TGG | - | chr3_4:68011769-68011788 | Msa0516510:CDS | 45.0% | |
| GGTTTAGTTGCTCGTACTAC+TGG | - | chr3_4:68011802-68011821 | Msa0516510:CDS | 45.0% | |
| CAAACCAGATTGGAGACAGA+GGG | - | chr3_4:68011873-68011892 | Msa0516510:CDS | 45.0% | |
| !! | TGCATTTGGCTCTATCTTGG+AGG | - | chr3_4:68011909-68011928 | Msa0516510:CDS | 45.0% |
| !! | GCATTTGGCTCTATCTTGGA+GGG | - | chr3_4:68011910-68011929 | Msa0516510:CDS | 45.0% |
| !! | CATTTGGCTCTATCTTGGAG+GGG | - | chr3_4:68011911-68011930 | Msa0516510:CDS | 45.0% |
| !! | GAGCACTGAGCATAAATGGT+AGG | + | chr3_4:68011975-68011994 | None:intergenic | 45.0% |
| TATGCTCAGTGCTCTAGTGA+AGG | - | chr3_4:68011981-68012000 | Msa0516510:CDS | 45.0% | |
| AGTTCTCCTTCAGAGCATGA+AGG | - | chr3_4:68012125-68012144 | Msa0516510:CDS | 45.0% | |
| GTCCCTAATGTTGCTGAGAA+AGG | - | chr3_4:68012150-68012169 | Msa0516510:CDS | 45.0% | |
| CAGCCTTTCTCAGCAACATT+AGG | + | chr3_4:68012156-68012175 | None:intergenic | 45.0% | |
| AATGTTGCTGAGAAAGGCTG+TGG | - | chr3_4:68012156-68012175 | Msa0516510:CDS | 45.0% | |
| AAAATCAGGGCCTATCGCAT+AGG | + | chr3_4:68012649-68012668 | None:intergenic | 45.0% | |
| CAACAGTTACGGCACAAACT+TGG | + | chr3_4:68012734-68012753 | None:intergenic | 45.0% | |
| CAAGTTTGTGCCGTAACTGT+TGG | - | chr3_4:68012732-68012751 | Msa0516510:intron | 45.0% | |
| CCAATGCATGAAAACAAGGG+GGG | + | chr3_4:68012873-68012892 | None:intergenic | 45.0% | |
| CAAGTCAAAGCCTGATGTGT+GGG | + | chr3_4:68012982-68013001 | None:intergenic | 45.0% | |
| !! | GCATATTCTGGGATCTTCCA+AGG | - | chr3_4:68013047-68013066 | Msa0516510:intron | 45.0% |
| TCCAAGAACTGGAGAATGTG+GGG | + | chr3_4:68013116-68013135 | None:intergenic | 45.0% | |
| !! | AAAACAGCCATTGGTGTCGT+TGG | - | chr3_4:68013269-68013288 | Msa0516510:intron | 45.0% |
| TAGATCTCCAACGACACCAA+TGG | + | chr3_4:68013279-68013298 | None:intergenic | 45.0% | |
| GGAGATCTAGCTGATACACT+TGG | - | chr3_4:68013290-68013309 | Msa0516510:intron | 45.0% | |
| GATACACTTGGAAGCAATGC+TGG | - | chr3_4:68013302-68013321 | Msa0516510:intron | 45.0% | |
| TGCAAAGGTCAGTGATGCAT+TGG | + | chr3_4:68013617-68013636 | None:intergenic | 45.0% | |
| CAATCGCAAGTAGAGATGCC+AGG | + | chr3_4:68009269-68009288 | None:intergenic | 50.0% | |
| AGGAAGGAAGGAAGGAACAG+CGG | + | chr3_4:68009295-68009314 | None:intergenic | 50.0% | |
| AAGAGCGAAGGAAGGAAGGA+AGG | + | chr3_4:68009303-68009322 | None:intergenic | 50.0% | |
| GAAGAAGAGCGAAGGAAGGA+AGG | + | chr3_4:68009307-68009326 | None:intergenic | 50.0% | |
| GAGAGAAGAAGAGCGAAGGA+AGG | + | chr3_4:68009311-68009330 | None:intergenic | 50.0% | |
| TCTGAAAGAGTAGCGAGGGA+AGG | + | chr3_4:68009347-68009366 | None:intergenic | 50.0% | |
| GTGGTAGACAGAGATATCGG+CGG | - | chr3_4:68009734-68009753 | Msa0516510:intron | 50.0% | |
| TGGTAGACAGAGATATCGGC+GGG | - | chr3_4:68009735-68009754 | Msa0516510:intron | 50.0% | |
| GGCGGGTGTGAATAAATAGG+TGG | - | chr3_4:68009752-68009771 | Msa0516510:intron | 50.0% | |
| GATCGGTAGGGTAACGTAGT+AGG | - | chr3_4:68009838-68009857 | Msa0516510:CDS | 50.0% | |
| CTGACACACGTACGTTGAAC+CGG | + | chr3_4:68009966-68009985 | None:intergenic | 50.0% | |
| GAGAGACCAAGAAACCAGGA+AGG | + | chr3_4:68010847-68010866 | None:intergenic | 50.0% | |
| GCCAACTTTCGGCTATCAAC+TGG | + | chr3_4:68010899-68010918 | None:intergenic | 50.0% | |
| !! | GTTGATAGCCGAAAGTTGGC+AGG | - | chr3_4:68010899-68010918 | Msa0516510:CDS | 50.0% |
| ! | AGCGGGAATTGGTTCAGAGA+TGG | - | chr3_4:68010966-68010985 | Msa0516510:CDS | 50.0% |
| GTCATTAGACACTGCAGCGA+AGG | - | chr3_4:68010991-68011010 | Msa0516510:CDS | 50.0% | |
| CCTCTCTTGTACTTGACGCT+CGG | - | chr3_4:68011047-68011066 | Msa0516510:CDS | 50.0% | |
| !! | AGTTCAGGCCACTGTTTCTG+AGG | + | chr3_4:68011118-68011137 | None:intergenic | 50.0% |
| GCTTGACATGAGCAGGAACT+TGG | + | chr3_4:68011168-68011187 | None:intergenic | 50.0% | |
| GTTGCTTGCTTGACATGAGC+AGG | + | chr3_4:68011175-68011194 | None:intergenic | 50.0% | |
| ! | GCAAGCAACTTTGGAGACTC+TGG | - | chr3_4:68011186-68011205 | Msa0516510:CDS | 50.0% |
| !! | GACTCTGGGGTATTTGTGTG+AGG | - | chr3_4:68011201-68011220 | Msa0516510:CDS | 50.0% |
| ! | GAAGTTGGCTCCTTACATCC+AGG | - | chr3_4:68011498-68011517 | Msa0516510:CDS | 50.0% |
| ! | TCAATGGCTTGGAGAGCAAC+AGG | + | chr3_4:68011568-68011587 | None:intergenic | 50.0% |
| AGGTATATCAGAGTCCCCAG+TGG | + | chr3_4:68011650-68011669 | None:intergenic | 50.0% | |
| CCTCTGTCTCCAATCTGGTT+TGG | + | chr3_4:68011875-68011894 | None:intergenic | 50.0% | |
| CCAAACCAGATTGGAGACAG+AGG | - | chr3_4:68011872-68011891 | Msa0516510:CDS | 50.0% | |
| GAAGCAGCGACGTATGCATT+TGG | - | chr3_4:68011895-68011914 | Msa0516510:CDS | 50.0% | |
| GGTAGGGCGTGATTAACAAG+AGG | + | chr3_4:68011958-68011977 | None:intergenic | 50.0% | |
| AGACACCACTGCTTGGACTT+TGG | - | chr3_4:68012023-68012042 | Msa0516510:CDS | 50.0% | |
| GACACCACTGCTTGGACTTT+GGG | - | chr3_4:68012024-68012043 | Msa0516510:CDS | 50.0% | |
| ACACCACTGCTTGGACTTTG+GGG | - | chr3_4:68012025-68012044 | Msa0516510:CDS | 50.0% | |
| GGACATCCTTCATGCTCTGA+AGG | + | chr3_4:68012134-68012153 | None:intergenic | 50.0% | |
| ACCCTGGGCGAGAAAATACA+GGG | + | chr3_4:68012184-68012203 | None:intergenic | 50.0% | |
| AACCCTGGGCGAGAAAATAC+AGG | + | chr3_4:68012185-68012204 | None:intergenic | 50.0% | |
| ! | TTTTCTCGCCCAGGGTTATG+AGG | - | chr3_4:68012188-68012207 | Msa0516510:CDS | 50.0% |
| TCCCACATCCTCATAACCCT+GGG | + | chr3_4:68012199-68012218 | None:intergenic | 50.0% | |
| TTCCCACATCCTCATAACCC+TGG | + | chr3_4:68012200-68012219 | None:intergenic | 50.0% | |
| TCTGTGGGTGACAGTGAGAA+GGG | + | chr3_4:68012265-68012284 | None:intergenic | 50.0% | |
| CTGTCAAGCACCCACAAAGA+AGG | + | chr3_4:68012479-68012498 | None:intergenic | 50.0% | |
| TAGAAATGCCACTGCCCATG+AGG | - | chr3_4:68012596-68012615 | Msa0516510:intron | 50.0% | |
| AAGGGCTCCAATAGCTAGCA+TGG | + | chr3_4:68012625-68012644 | None:intergenic | 50.0% | |
| GCCGTAACTGTTGGTGTAGT+CGG | - | chr3_4:68012741-68012760 | Msa0516510:intron | 50.0% | |
| GCCGACTACACCAACAGTTA+CGG | + | chr3_4:68012745-68012764 | None:intergenic | 50.0% | |
| TGTAGTCGGCGACATATGCA+GGG | - | chr3_4:68012755-68012774 | Msa0516510:intron | 50.0% | |
| !!! | CCCCCCTTGTTTTCATGCAT+TGG | - | chr3_4:68012870-68012889 | Msa0516510:intron | 50.0% |
| CCAAGTCAAAGCCTGATGTG+TGG | + | chr3_4:68012983-68013002 | None:intergenic | 50.0% | |
| ! | CCACACATCAGGCTTTGACT+TGG | - | chr3_4:68012980-68012999 | Msa0516510:intron | 50.0% |
| ! | TGGAGAATGTGGGGAGCATA+AGG | + | chr3_4:68013107-68013126 | None:intergenic | 50.0% |
| TCCCCACATTCTCCAGTTCT+TGG | - | chr3_4:68013112-68013131 | Msa0516510:intron | 50.0% | |
| ! | AGCACGATTGATGGCCAACT+TGG | + | chr3_4:68013420-68013439 | None:intergenic | 50.0% |
| !! | TCGGTGCTACATAGCCTCGA+AGG | + | chr3_4:68009878-68009897 | None:intergenic | 55.0% |
| AGTGTCGTGTCCAGTGTCCA+TGG | - | chr3_4:68009984-68010003 | Msa0516510:CDS | 55.0% | |
| AATGCGGACACCATGGACAC+TGG | + | chr3_4:68009997-68010016 | None:intergenic | 55.0% | |
| GGACACAAATGCGGACACCA+TGG | + | chr3_4:68010004-68010023 | None:intergenic | 55.0% | |
| CCGAGCGTCAAGTACAAGAG+AGG | + | chr3_4:68011050-68011069 | None:intergenic | 55.0% | |
| !! | ATGTCAGACTTGCTGCTGCC+AGG | - | chr3_4:68011314-68011333 | Msa0516510:CDS | 55.0% |
| !! | TGTCAGACTTGCTGCTGCCA+GGG | - | chr3_4:68011315-68011334 | Msa0516510:CDS | 55.0% |
| ATGGCAGGTGGTACATGCCT+TGG | - | chr3_4:68011781-68011800 | Msa0516510:CDS | 55.0% | |
| GCTTCCCTCTGTCTCCAATC+TGG | + | chr3_4:68011880-68011899 | None:intergenic | 55.0% | |
| ! | AGCCCTGTATTTTCTCGCCC+AGG | - | chr3_4:68012179-68012198 | Msa0516510:CDS | 55.0% |
| ! | GCCCTGTATTTTCTCGCCCA+GGG | - | chr3_4:68012180-68012199 | Msa0516510:CDS | 55.0% |
| GCCCAGGGTTATGAGGATGT+GGG | - | chr3_4:68012195-68012214 | Msa0516510:CDS | 55.0% | |
| CTCTGTGGGTGACAGTGAGA+AGG | + | chr3_4:68012266-68012285 | None:intergenic | 55.0% | |
| TCTCACTGTCACCCACAGAG+AGG | - | chr3_4:68012266-68012285 | Msa0516510:intron | 55.0% | |
| CACCCACAGAGAGGATGCTA+CGG | - | chr3_4:68012275-68012294 | Msa0516510:intron | 55.0% | |
| CTCCGTAGCATCCTCTCTGT+GGG | + | chr3_4:68012280-68012299 | None:intergenic | 55.0% | |
| ACTCCGTAGCATCCTCTCTG+TGG | + | chr3_4:68012281-68012300 | None:intergenic | 55.0% | |
| GAGAGGATGCTACGGAGTCA+CGG | - | chr3_4:68012283-68012302 | Msa0516510:intron | 55.0% | |
| AAATGCCACTGCCCATGAGG+AGG | - | chr3_4:68012599-68012618 | Msa0516510:intron | 55.0% | |
| AGCTAGCATGGCCTCCTCAT+GGG | + | chr3_4:68012613-68012632 | None:intergenic | 55.0% | |
| TAGCTAGCATGGCCTCCTCA+TGG | + | chr3_4:68012614-68012633 | None:intergenic | 55.0% | |
| GAGGAGGCCATGCTAGCTAT+TGG | - | chr3_4:68012615-68012634 | Msa0516510:intron | 55.0% | |
| AGGGCCTATCGCATAGGCAA+GGG | + | chr3_4:68012643-68012662 | None:intergenic | 55.0% | |
| GTGTAGTCGGCGACATATGC+AGG | - | chr3_4:68012754-68012773 | Msa0516510:intron | 55.0% | |
| !! | CGACATATGCAGGGCATTGG+AGG | - | chr3_4:68012764-68012783 | Msa0516510:intron | 55.0% |
| ACAAGGGGGGCTTCACAGAA+CGG | + | chr3_4:68012860-68012879 | None:intergenic | 55.0% | |
| GAGATGTACGCCCACACATC+AGG | - | chr3_4:68012969-68012988 | Msa0516510:intron | 55.0% | |
| ATCTGCCGAATGGGCCAAGT+TGG | - | chr3_4:68013403-68013422 | Msa0516510:intron | 55.0% | |
| GATGGCCAACTTGGCCCATT+CGG | + | chr3_4:68013411-68013430 | None:intergenic | 55.0% | |
| GCATGCATTTGGGTGTGTCG+AGG | - | chr3_4:68013492-68013511 | Msa0516510:intron | 55.0% | |
| TGCATTTGGGTGTGTCGAGG+TGG | - | chr3_4:68013495-68013514 | Msa0516510:intron | 55.0% | |
| GCATTTGGGTGTGTCGAGGT+GGG | - | chr3_4:68013496-68013515 | Msa0516510:intron | 55.0% | |
| TGCAGCGAAGGCCCAGGTTA+AGG | - | chr3_4:68011003-68011022 | Msa0516510:CDS | 60.0% | |
| GTGTGAGGAAGTCCCCCATG+AGG | - | chr3_4:68011216-68011235 | Msa0516510:CDS | 60.0% | |
| CAGAGGGACGAGTGCAGGAA+GGG | + | chr3_4:68011695-68011714 | None:intergenic | 60.0% | |
| AACAGCAGAGGGACGAGTGC+AGG | + | chr3_4:68011700-68011719 | None:intergenic | 60.0% | |
| TGCACTCGTCCCTCTGCTGT+TGG | - | chr3_4:68011699-68011718 | Msa0516510:CDS | 60.0% | |
| ! | CCACTGCTTGGACTTTGGGG+CGG | - | chr3_4:68012028-68012047 | Msa0516510:CDS | 60.0% |
| CGCCCAGGGTTATGAGGATG+TGG | - | chr3_4:68012194-68012213 | Msa0516510:CDS | 60.0% | |
| GGAGCCCTTGCCTATGCGAT+AGG | - | chr3_4:68012636-68012655 | Msa0516510:intron | 60.0% | |
| CAGGGCCTATCGCATAGGCA+AGG | + | chr3_4:68012644-68012663 | None:intergenic | 60.0% | |
| CGGCGACATATGCAGGGCAT+TGG | - | chr3_4:68012761-68012780 | Msa0516510:intron | 60.0% | |
| AGACACTGCAGCGAAGGCCC+AGG | - | chr3_4:68010997-68011016 | Msa0516510:CDS | 65.0% | |
| GCAGAGGGACGAGTGCAGGA+AGG | + | chr3_4:68011696-68011715 | None:intergenic | 65.0% | |
| CCGCCCCAAAGTCCAAGCAG+TGG | + | chr3_4:68012031-68012050 | None:intergenic | 65.0% | |
| CATGGCCTCCTCATGGGCAG+TGG | + | chr3_4:68012607-68012626 | None:intergenic | 65.0% | |
| GGTGTGTCGAGGTGGGTCGT+GGG | - | chr3_4:68013503-68013522 | Msa0516510:intron | 65.0% | |
| GGGTGTGTCGAGGTGGGTCG+TGG | - | chr3_4:68013502-68013521 | Msa0516510:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 68009254 | 68013716 | 68009254 | ID=Msa0516510;Name=Msa0516510 |
| chr3_4 | mRNA | 68009254 | 68013716 | 68009254 | ID=Msa0516510-mRNA-1;Parent=Msa0516510;Name=Msa0516510-mRNA-1;_AED=0.01;_eAED=0.01;_QI=144|1|1|1|0.5|0.33|3|265|869 |
| chr3_4 | exon | 68009254 | 68009717 | 68009254 | ID=Msa0516510-mRNA-1:exon:17868;Parent=Msa0516510-mRNA-1 |
| chr3_4 | exon | 68009811 | 68012234 | 68009811 | ID=Msa0516510-mRNA-1:exon:17867;Parent=Msa0516510-mRNA-1 |
| chr3_4 | exon | 68013586 | 68013716 | 68013586 | ID=Msa0516510-mRNA-1:exon:17866;Parent=Msa0516510-mRNA-1 |
| chr3_4 | five_prime_UTR | 68013586 | 68013716 | 68013586 | ID=Msa0516510-mRNA-1:five_prime_utr;Parent=Msa0516510-mRNA-1 |
| chr3_4 | five_prime_UTR | 68012222 | 68012234 | 68012222 | ID=Msa0516510-mRNA-1:five_prime_utr;Parent=Msa0516510-mRNA-1 |
| chr3_4 | CDS | 68009811 | 68012221 | 68009811 | ID=Msa0516510-mRNA-1:cds;Parent=Msa0516510-mRNA-1 |
| chr3_4 | CDS | 68009519 | 68009717 | 68009519 | ID=Msa0516510-mRNA-1:cds;Parent=Msa0516510-mRNA-1 |
| chr3_4 | three_prime_UTR | 68009254 | 68009518 | 68009254 | ID=Msa0516510-mRNA-1:three_prime_utr;Parent=Msa0516510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
