AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0292240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0292240 MtrunA17_Chr2g0312771 91.121 214 19 0 1 214 1 214 1.16e-147 409
Msa0292240 MtrunA17_Chr2g0312781 89.862 217 22 0 1 217 18 234 4.87e-147 408
Msa0292240 MtrunA17_Chr2g0312751 89.720 214 22 0 1 214 1 214 6.33e-146 405
Msa0292240 MtrunA17_Chr2g0312731 80.556 216 42 0 1 216 1 216 2.17e-134 376
Msa0292240 MtrunA17_Chr2g0312811 77.315 216 47 1 1 214 1 216 1.64e-126 356
Msa0292240 MtrunA17_Chr2g0312791 73.973 219 54 3 1 216 1 219 1.40e-118 336
Msa0292240 MtrunA17_Chr2g0312681 65.116 215 75 0 1 215 1 215 2.15e-110 315
Msa0292240 MtrunA17_Chr2g0312691 65.116 215 75 0 1 215 1 215 3.56e-107 307
Msa0292240 MtrunA17_Chr8g0357241 65.421 214 74 0 1 214 1 214 1.24e-101 293
Msa0292240 MtrunA17_Chr8g0357211 64.789 213 75 0 1 213 1 213 1.12e-100 290
Msa0292240 MtrunA17_Chr3g0107731 62.381 210 79 0 5 214 10 219 1.98e-100 290
Msa0292240 MtrunA17_Chr2g0312711 62.791 215 79 1 1 215 1 214 2.12e-100 290
Msa0292240 MtrunA17_Chr3g0107741 60.377 212 84 0 3 214 8 219 1.09e-96 281
Msa0292240 MtrunA17_Chr2g0312721 60.563 213 84 0 1 213 1 213 6.02e-93 271
Msa0292240 MtrunA17_Chr5g0433801 52.804 214 99 2 2 214 4 216 2.48e-80 239
Msa0292240 MtrunA17_Chr4g0069471 61.202 183 68 2 1 182 22 202 2.27e-79 236
Msa0292240 MtrunA17_Chr1g0196661 42.718 206 113 3 4 205 3 207 1.84e-51 166
Msa0292240 MtrunA17_Chr8g0379581 41.748 206 117 2 2 205 3 207 7.81e-51 164
Msa0292240 MtrunA17_Chr5g0415411 43.192 213 112 5 2 205 3 215 2.30e-50 163
Msa0292240 MtrunA17_Chr5g0417011 36.967 211 126 2 2 205 5 215 8.18e-50 161
Msa0292240 MtrunA17_Chr7g0240681 42.233 206 111 5 3 203 6 208 1.22e-49 161
Msa0292240 MtrunA17_Chr8g0379561 42.157 204 115 2 4 205 6 208 3.04e-49 160
Msa0292240 MtrunA17_Chr7g0240691 44.175 206 107 5 3 203 36 238 3.15e-49 161
Msa0292240 MtrunA17_Chr3g0132581 41.951 205 116 2 3 205 4 207 5.49e-49 159
Msa0292240 MtrunA17_Chr4g0008781 40.488 205 119 2 3 205 7 210 1.52e-48 158
Msa0292240 MtrunA17_Chr7g0240611 41.463 205 111 5 3 204 6 204 3.72e-48 157
Msa0292240 MtrunA17_Chr7g0240641 41.176 204 115 4 3 203 6 207 3.83e-48 157
Msa0292240 MtrunA17_Chr4g0029341 42.381 210 114 4 1 205 1 208 4.14e-48 157
Msa0292240 MtrunA17_Chr7g0240631 39.706 204 118 4 3 203 6 207 3.80e-47 155
Msa0292240 MtrunA17_Chr4g0008791 41.379 203 114 4 4 203 7 207 2.34e-46 153
Msa0292240 MtrunA17_Chr1g0196691 39.130 207 118 5 4 204 28 232 1.14e-45 152
Msa0292240 MtrunA17_Chr6g0483141 41.885 191 106 3 18 205 17 205 1.50e-45 150
Msa0292240 MtrunA17_Chr1g0196721 42.714 199 109 3 11 205 9 206 2.40e-45 150
Msa0292240 MtrunA17_Chr7g0240671 40.000 205 118 5 1 204 1 201 5.72e-45 149
Msa0292240 MtrunA17_Chr1g0196771 39.352 216 121 6 3 214 2 211 8.07e-45 149
Msa0292240 MtrunA17_Chr7g0240531 40.777 206 117 5 3 205 6 209 1.89e-44 148
Msa0292240 MtrunA17_Chr7g0240561 37.745 204 122 4 3 203 6 207 9.88e-44 146
Msa0292240 MtrunA17_Chr7g0240541 39.706 204 118 5 3 203 6 207 2.50e-43 145
Msa0292240 MtrunA17_Chr7g0240551 40.291 206 118 5 3 205 6 209 2.76e-43 145
Msa0292240 MtrunA17_Chr8g0363751 35.780 218 125 4 3 208 4 218 8.02e-43 144
Msa0292240 MtrunA17_Chr7g0240581 38.235 204 121 4 3 203 6 207 1.02e-42 143
Msa0292240 MtrunA17_Chr7g0240661 41.063 207 117 5 1 206 4 206 1.28e-42 143
Msa0292240 MtrunA17_Chr7g0240651 40.488 205 113 5 3 204 6 204 4.93e-42 141
Msa0292240 MtrunA17_Chr1g0196711 40.000 215 121 5 4 211 3 216 3.16e-41 139
Msa0292240 MtrunA17_Chr7g0240511 39.901 203 114 5 3 203 6 202 8.14e-41 138
Msa0292240 MtrunA17_Chr1g0212301 38.565 223 127 7 1 217 1 219 8.94e-39 133
Msa0292240 MtrunA17_Chr7g0240521 38.806 201 118 5 3 200 13 211 3.87e-36 127
Msa0292240 MtrunA17_Chr8g0391631 39.873 158 82 3 4 151 21 175 5.06e-36 125
Msa0292240 MtrunA17_Chr2g0313561 60.811 74 28 1 47 119 1 74 7.84e-30 105
Msa0292240 MtrunA17_Chr4g0076691 30.994 171 99 5 4 159 15 181 1.28e-13 67.4
Msa0292240 MtrunA17_Chr1g0181861 28.641 206 132 7 10 209 33 229 8.02e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0292240 AT1G78380.1 68.692 214 67 0 1 214 1 214 2.31e-112 320
Msa0292240 AT1G17180.1 66.822 214 71 0 1 214 1 214 2.01e-111 318
Msa0292240 AT1G78370.1 65.278 216 75 0 1 216 1 216 4.30e-107 307
Msa0292240 AT1G78320.1 64.486 214 76 0 1 214 1 214 9.34e-105 301
Msa0292240 AT1G17170.1 64.953 214 74 1 1 214 1 213 1.17e-104 301
Msa0292240 AT1G78340.1 64.019 214 77 0 1 214 1 214 1.35e-104 301
Msa0292240 AT1G78360.1 64.651 215 75 1 1 214 1 215 8.35e-104 299
Msa0292240 AT1G53680.1 58.491 212 86 2 5 214 8 219 1.34e-93 273
Msa0292240 AT1G17190.1 57.547 212 90 0 3 214 4 215 1.88e-93 273
Msa0292240 AT3G43800.1 55.300 217 93 3 3 215 4 220 3.67e-84 249
Msa0292240 AT1G78320.2 56.075 214 67 1 1 214 1 187 5.55e-83 245
Msa0292240 AT2G29420.1 44.390 205 111 2 2 204 7 210 2.82e-59 186
Msa0292240 AT3G09270.1 42.233 206 116 2 3 205 5 210 1.77e-52 169
Msa0292240 AT2G29440.1 44.660 206 108 4 3 204 5 208 9.74e-52 167
Msa0292240 AT2G29450.1 44.444 207 108 5 3 204 5 209 5.10e-51 165
Msa0292240 AT1G10360.1 41.096 219 121 4 2 212 3 221 5.55e-50 162
Msa0292240 AT2G29490.1 39.171 217 126 4 3 215 6 220 7.92e-50 162
Msa0292240 AT2G29480.1 40.777 206 116 4 3 204 6 209 3.42e-48 158
Msa0292240 AT1G59700.1 41.096 219 120 5 3 212 5 223 8.40e-48 157
Msa0292240 AT2G29470.1 40.488 205 115 5 5 204 8 210 3.87e-47 155
Msa0292240 AT1G10370.1 38.288 222 115 4 2 208 3 217 4.15e-46 152
Msa0292240 AT2G29460.1 39.806 206 118 4 3 204 6 209 4.99e-46 152
Msa0292240 AT1G59670.1 41.364 220 118 5 3 212 5 223 4.81e-45 150
Msa0292240 AT1G27140.1 38.667 225 128 4 3 217 5 229 1.66e-44 149
Msa0292240 AT1G74590.1 35.000 220 129 3 5 214 8 223 6.52e-44 147
Msa0292240 AT1G27130.1 37.736 212 123 4 3 205 5 216 5.30e-43 144
Msa0292240 AT1G69930.1 37.981 208 122 3 5 205 13 220 9.08e-43 144
Msa0292240 AT5G62480.1 34.361 227 137 3 1 216 5 230 2.85e-42 143
Msa0292240 AT1G69920.1 37.500 208 115 5 5 200 35 239 6.40e-40 137
Msa0292240 AT5G62480.2 28.444 225 123 4 3 216 7 204 1.20e-25 99.8
Msa0292240 AT5G62480.3 28.444 225 122 4 3 216 7 203 1.27e-25 99.4

Find 80 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGAGACAAGACTTATTT+TGG 0.161950 2_3:+41177647 Msa0292240:CDS
GCAACTAAAGATTCACAAAT+AGG 0.275943 2_3:-41177183 None:intergenic
TATTATATTATGTAATAAAA+AGG 0.285708 2_3:+41178063 Msa0292240:three_prime_UTR
CAAATTGTTGGAGCAAGAAT+TGG 0.293479 2_3:+41177628 Msa0292240:CDS
GACATCTATGAATTCTTTCT+TGG 0.300931 2_3:-41177603 None:intergenic
AAGTGATTCTGCTTGATTCC+TGG 0.317076 2_3:+41177007 Msa0292240:CDS
GTTTAGATGAACGGTGAGTT+TGG 0.321813 2_3:+41177911 Msa0292240:three_prime_UTR
TCAAATGAGTGGTTATATAT+AGG 0.323189 2_3:-41178184 None:intergenic
TTCAGTATATTGATGAGGTT+TGG 0.327749 2_3:+41177208 Msa0292240:CDS
TTTATTTATAGAGTGAGATT+TGG 0.329312 2_3:-41176880 None:intergenic
TAAATCATTTATGACGTGTT+TGG 0.334319 2_3:-41178013 None:intergenic
TATGATGGTTTATTGTGATT+TGG 0.340334 2_3:+41177976 Msa0292240:three_prime_UTR
AAATCTCACTCTATAAATAA+AGG 0.355663 2_3:+41176882 Msa0292240:five_prime_UTR
CAAATGAGTGGTTATATATA+GGG 0.356990 2_3:-41178183 None:intergenic
AAGGAACCTTTGGGCCAAAA+AGG 0.360471 2_3:+41177562 Msa0292240:CDS
CTTACAAAATGCACAACGTT+TGG 0.364730 2_3:-41178098 None:intergenic
GATTCCTGGGCAAGTCCATT+TGG 0.366880 2_3:+41177021 Msa0292240:CDS
CATAGATGTCCTCAAATTGT+TGG 0.381980 2_3:+41177616 Msa0292240:CDS
CAGAATAGCCCTAGCTGAAA+AGG 0.384656 2_3:+41177053 Msa0292240:CDS
ATGAAGGTGGAAGGAACCTT+TGG 0.390594 2_3:+41177552 Msa0292240:CDS
CACTTATTCCATTCTACACT+TGG 0.395366 2_3:+41177699 Msa0292240:CDS
ATTCTTGCTCCAACAATTTG+AGG 0.395572 2_3:-41177625 None:intergenic
TTTAAAAGCTATGAGACCTT+TGG 0.396998 2_3:+41177722 Msa0292240:CDS
AGACGGGTTATTGAGTAGGT+TGG 0.414239 2_3:+41177873 Msa0292240:exon
TTACCGTTATGAATCAGAAC+AGG 0.415381 2_3:-41177159 None:intergenic
TTCAAAGTCTCTTCCTGATC+AGG 0.420326 2_3:+41177817 Msa0292240:CDS
AGAGATCACAAGCTAGGTTC+TGG 0.428783 2_3:+41177268 Msa0292240:CDS
ATAGAATAGATAGATTGTTA+TGG 0.430247 2_3:-41176942 None:intergenic
TTGGCCCAAGCAATGAACTT+AGG 0.437475 2_3:-41177770 None:intergenic
TATGTTGAATTGCACAATAT+AGG 0.449373 2_3:+41176770 Msa0292240:five_prime_UTR
TCATGGACCTTATCCTGATC+AGG 0.451856 2_3:-41177830 None:intergenic
CTCAATCTGCATACATCTCT+TGG 0.460115 2_3:-41177789 None:intergenic
GTCTCTTCCTGATCAGGATA+AGG 0.461296 2_3:+41177823 Msa0292240:CDS
TGGCCCAAGCAATGAACTTA+GGG 0.464217 2_3:-41177769 None:intergenic
ATGCCCTAAGTTCATTGCTT+GGG 0.465024 2_3:+41177766 Msa0292240:CDS
CTAGCTTGTGATCTCTGATA+AGG 0.467136 2_3:-41177261 None:intergenic
AGGTTGGAGATGTTAAGTGC+AGG 0.468925 2_3:+41177889 Msa0292240:three_prime_UTR
AATGCCCTAAGTTCATTGCT+TGG 0.469149 2_3:+41177765 Msa0292240:CDS
GGTTCATTTGTAACAACAAA+GGG 0.474781 2_3:-41177119 None:intergenic
AAATTGTTGGAGCAAGAATT+GGG 0.479522 2_3:+41177629 Msa0292240:CDS
AATGTGTGTGAGAGAGTACA+AGG 0.479771 2_3:-41176912 None:intergenic
AGTGATTCTGCTTGATTCCT+GGG 0.480041 2_3:+41177008 Msa0292240:CDS
GACATTTGTTAAAATTATGA+TGG 0.484695 2_3:+41177961 Msa0292240:three_prime_UTR
GTGTGTGTGGAATGTGGAAT+AGG 0.491195 2_3:-41176839 None:intergenic
GAGATCACAAGCTAGGTTCT+GGG 0.491244 2_3:+41177269 Msa0292240:CDS
GGCTGATTATGTTGATAAGA+AGG 0.507102 2_3:+41177290 Msa0292240:CDS
TGAAGGTGGAAGGAACCTTT+GGG 0.507522 2_3:+41177553 Msa0292240:CDS
ATTCTGAGTCTCATGCCAAA+TGG 0.515676 2_3:-41177036 None:intergenic
ATTGTAGAGCTGAGGAAGAC+GGG 0.518205 2_3:+41177857 Msa0292240:CDS
AATGTCAAATAGATATATGA+AGG 0.531559 2_3:+41177536 Msa0292240:intron
AGAATAGCCCTAGCTGAAAA+GGG 0.531819 2_3:+41177054 Msa0292240:CDS
CATGCCAAATGGACTTGCCC+AGG 0.533387 2_3:-41177025 None:intergenic
AATTGTAGAGCTGAGGAAGA+CGG 0.540044 2_3:+41177856 Msa0292240:CDS
AGGAAGACGGGTTATTGAGT+AGG 0.546317 2_3:+41177869 Msa0292240:exon
CTCTACATTGATGTTGCCAA+AGG 0.546992 2_3:-41177738 None:intergenic
CTTATCAGAGATCACAAGCT+AGG 0.551577 2_3:+41177262 Msa0292240:CDS
AATAGATAGATTGTTATGGA+AGG 0.553152 2_3:-41176938 None:intergenic
ATCCCTGTTCTGATTCATAA+CGG 0.561977 2_3:+41177156 Msa0292240:CDS
TTATTCTCTCTGACTAGCCA+TGG 0.562818 2_3:+41176978 Msa0292240:exon
TGCTGTTCAGTATATTGATG+AGG 0.563629 2_3:+41177203 Msa0292240:CDS
TACACACTTGTGAATTGTGA+TGG 0.564133 2_3:+41178135 Msa0292240:three_prime_UTR
AGAAATGTGTGTGTGGAATG+TGG 0.566350 2_3:-41176845 None:intergenic
AGGAAGGAATAGTGACTGTG+AGG 0.567594 2_3:-41176819 None:intergenic
AATAGATATATGAAGGTGGA+AGG 0.568115 2_3:+41177543 Msa0292240:intron
TGGCAACATCAATGTAGAGA+AGG 0.574601 2_3:+41177742 Msa0292240:CDS
GTGGTTATATATAGGGACGG+AGG 0.582958 2_3:-41178176 None:intergenic
TAAGTGCAGGTTTAGATGAA+CGG 0.587945 2_3:+41177902 Msa0292240:three_prime_UTR
CAGAATCACTTCATCAGCCA+TGG 0.592382 2_3:-41176995 None:intergenic
GATCTCTGATAAGGATCAGA+AGG 0.596783 2_3:-41177252 None:intergenic
TGGTTATATATAGGGACGGA+GGG 0.597800 2_3:-41178175 None:intergenic
GGGTTCATTTGTAACAACAA+AGG 0.598423 2_3:-41177120 None:intergenic
GTCAAATAGATATATGAAGG+TGG 0.608108 2_3:+41177539 Msa0292240:intron
TAAGGATCAGAAGGCAACAA+AGG 0.613337 2_3:-41177243 None:intergenic
TCAGCTCTACAATTAAGTCA+TGG 0.618125 2_3:-41177847 None:intergenic
TACCGTTATGAATCAGAACA+GGG 0.629965 2_3:-41177158 None:intergenic
ATGACTTAATTGTAGAGCTG+AGG 0.630926 2_3:+41177849 Msa0292240:CDS
GTGTGGAATGTGGAATAGGA+AGG 0.633550 2_3:-41176835 None:intergenic
TGAGTGGTTATATATAGGGA+CGG 0.649729 2_3:-41178179 None:intergenic
ATGTGTGTGAGAGAGTACAA+GGG 0.660733 2_3:-41176911 None:intergenic
ATAGTATAGAAATGTGTGTG+TGG 0.679177 2_3:-41176852 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTATAGAGTGAGATT+TGG - chr2_3:41176883-41176902 None:intergenic 20.0%
!! AAATCTCACTCTATAAATAA+AGG + chr2_3:41176882-41176901 Msa0292240:five_prime_UTR 20.0%
!! ATAGAATAGATAGATTGTTA+TGG - chr2_3:41176945-41176964 None:intergenic 20.0%
!!! TGATAAGAAGGTATATAAAT+TGG + chr2_3:41177302-41177321 Msa0292240:intron 20.0%
!! AATGTCAAATAGATATATGA+AGG + chr2_3:41177536-41177555 Msa0292240:intron 20.0%
!!! GACATTTGTTAAAATTATGA+TGG + chr2_3:41177961-41177980 Msa0292240:three_prime_UTR 20.0%
!! TTTATTTATAGAGTGAGATT+TGG - chr2_3:41176883-41176902 None:intergenic 20.0%
!! AAATCTCACTCTATAAATAA+AGG + chr2_3:41176882-41176901 Msa0292240:five_prime_UTR 20.0%
!! ATAGAATAGATAGATTGTTA+TGG - chr2_3:41176945-41176964 None:intergenic 20.0%
!!! TGATAAGAAGGTATATAAAT+TGG + chr2_3:41177302-41177321 Msa0292240:intron 20.0%
!! AATGTCAAATAGATATATGA+AGG + chr2_3:41177536-41177555 Msa0292240:intron 20.0%
!!! GACATTTGTTAAAATTATGA+TGG + chr2_3:41177961-41177980 Msa0292240:three_prime_UTR 20.0%
! TATGTTGAATTGCACAATAT+AGG + chr2_3:41176770-41176789 Msa0292240:five_prime_UTR 25.0%
! AATAGATAGATTGTTATGGA+AGG - chr2_3:41176941-41176960 None:intergenic 25.0%
!!! AGTTTTATATGAGACTTGTA+TGG + chr2_3:41177453-41177472 Msa0292240:intron 25.0%
! TATGATGGTTTATTGTGATT+TGG + chr2_3:41177976-41177995 Msa0292240:three_prime_UTR 25.0%
! TAAATCATTTATGACGTGTT+TGG - chr2_3:41178016-41178035 None:intergenic 25.0%
! CAAATGAGTGGTTATATATA+GGG - chr2_3:41178186-41178205 None:intergenic 25.0%
! TCAAATGAGTGGTTATATAT+AGG - chr2_3:41178187-41178206 None:intergenic 25.0%
!!! CAATTTTTTAGTCAAATGAG+TGG - chr2_3:41178198-41178217 None:intergenic 25.0%
! TATGTTGAATTGCACAATAT+AGG + chr2_3:41176770-41176789 Msa0292240:five_prime_UTR 25.0%
! AATAGATAGATTGTTATGGA+AGG - chr2_3:41176941-41176960 None:intergenic 25.0%
!!! AGTTTTATATGAGACTTGTA+TGG + chr2_3:41177453-41177472 Msa0292240:intron 25.0%
! TATGATGGTTTATTGTGATT+TGG + chr2_3:41177976-41177995 Msa0292240:three_prime_UTR 25.0%
! TAAATCATTTATGACGTGTT+TGG - chr2_3:41178016-41178035 None:intergenic 25.0%
! CAAATGAGTGGTTATATATA+GGG - chr2_3:41178186-41178205 None:intergenic 25.0%
! TCAAATGAGTGGTTATATAT+AGG - chr2_3:41178187-41178206 None:intergenic 25.0%
!!! CAATTTTTTAGTCAAATGAG+TGG - chr2_3:41178198-41178217 None:intergenic 25.0%
ATAGTATAGAAATGTGTGTG+TGG - chr2_3:41176855-41176874 None:intergenic 30.0%
GGTTCATTTGTAACAACAAA+GGG - chr2_3:41177122-41177141 None:intergenic 30.0%
GCAACTAAAGATTCACAAAT+AGG - chr2_3:41177186-41177205 None:intergenic 30.0%
TTCAGTATATTGATGAGGTT+TGG + chr2_3:41177208-41177227 Msa0292240:CDS 30.0%
GTCAAATAGATATATGAAGG+TGG + chr2_3:41177539-41177558 Msa0292240:intron 30.0%
AATAGATATATGAAGGTGGA+AGG + chr2_3:41177543-41177562 Msa0292240:intron 30.0%
GACATCTATGAATTCTTTCT+TGG - chr2_3:41177606-41177625 None:intergenic 30.0%
AAATTGTTGGAGCAAGAATT+GGG + chr2_3:41177629-41177648 Msa0292240:CDS 30.0%
! CTTTTAAACCAAGTGTAGAA+TGG - chr2_3:41177710-41177729 None:intergenic 30.0%
TTTAAAAGCTATGAGACCTT+TGG + chr2_3:41177722-41177741 Msa0292240:CDS 30.0%
ATAGTATAGAAATGTGTGTG+TGG - chr2_3:41176855-41176874 None:intergenic 30.0%
GGTTCATTTGTAACAACAAA+GGG - chr2_3:41177122-41177141 None:intergenic 30.0%
GCAACTAAAGATTCACAAAT+AGG - chr2_3:41177186-41177205 None:intergenic 30.0%
TTCAGTATATTGATGAGGTT+TGG + chr2_3:41177208-41177227 Msa0292240:CDS 30.0%
GTCAAATAGATATATGAAGG+TGG + chr2_3:41177539-41177558 Msa0292240:intron 30.0%
AATAGATATATGAAGGTGGA+AGG + chr2_3:41177543-41177562 Msa0292240:intron 30.0%
GACATCTATGAATTCTTTCT+TGG - chr2_3:41177606-41177625 None:intergenic 30.0%
AAATTGTTGGAGCAAGAATT+GGG + chr2_3:41177629-41177648 Msa0292240:CDS 30.0%
! CTTTTAAACCAAGTGTAGAA+TGG - chr2_3:41177710-41177729 None:intergenic 30.0%
TTTAAAAGCTATGAGACCTT+TGG + chr2_3:41177722-41177741 Msa0292240:CDS 30.0%
GGGTTCATTTGTAACAACAA+AGG - chr2_3:41177123-41177142 None:intergenic 35.0%
ATCCCTGTTCTGATTCATAA+CGG + chr2_3:41177156-41177175 Msa0292240:CDS 35.0%
TACCGTTATGAATCAGAACA+GGG - chr2_3:41177161-41177180 None:intergenic 35.0%
TTACCGTTATGAATCAGAAC+AGG - chr2_3:41177162-41177181 None:intergenic 35.0%
TGCTGTTCAGTATATTGATG+AGG + chr2_3:41177203-41177222 Msa0292240:CDS 35.0%
! GGCTGATTATGTTGATAAGA+AGG + chr2_3:41177290-41177309 Msa0292240:CDS 35.0%
CATAGATGTCCTCAAATTGT+TGG + chr2_3:41177616-41177635 Msa0292240:CDS 35.0%
ATTCTTGCTCCAACAATTTG+AGG - chr2_3:41177628-41177647 None:intergenic 35.0%
CAAATTGTTGGAGCAAGAAT+TGG + chr2_3:41177628-41177647 Msa0292240:CDS 35.0%
! TTGGGAGACAAGACTTATTT+TGG + chr2_3:41177647-41177666 Msa0292240:CDS 35.0%
!! TATTTTGGAGGAGATAAGCT+TGG + chr2_3:41177662-41177681 Msa0292240:CDS 35.0%
CACTTATTCCATTCTACACT+TGG + chr2_3:41177699-41177718 Msa0292240:CDS 35.0%
TCAGCTCTACAATTAAGTCA+TGG - chr2_3:41177850-41177869 None:intergenic 35.0%
ATGACTTAATTGTAGAGCTG+AGG + chr2_3:41177849-41177868 Msa0292240:CDS 35.0%
TAAGTGCAGGTTTAGATGAA+CGG + chr2_3:41177902-41177921 Msa0292240:three_prime_UTR 35.0%
CTTACAAAATGCACAACGTT+TGG - chr2_3:41178101-41178120 None:intergenic 35.0%
TACACACTTGTGAATTGTGA+TGG + chr2_3:41178135-41178154 Msa0292240:three_prime_UTR 35.0%
TGAGTGGTTATATATAGGGA+CGG - chr2_3:41178182-41178201 None:intergenic 35.0%
GGGTTCATTTGTAACAACAA+AGG - chr2_3:41177123-41177142 None:intergenic 35.0%
ATCCCTGTTCTGATTCATAA+CGG + chr2_3:41177156-41177175 Msa0292240:CDS 35.0%
TACCGTTATGAATCAGAACA+GGG - chr2_3:41177161-41177180 None:intergenic 35.0%
TTACCGTTATGAATCAGAAC+AGG - chr2_3:41177162-41177181 None:intergenic 35.0%
TGCTGTTCAGTATATTGATG+AGG + chr2_3:41177203-41177222 Msa0292240:CDS 35.0%
! GGCTGATTATGTTGATAAGA+AGG + chr2_3:41177290-41177309 Msa0292240:CDS 35.0%
CATAGATGTCCTCAAATTGT+TGG + chr2_3:41177616-41177635 Msa0292240:CDS 35.0%
ATTCTTGCTCCAACAATTTG+AGG - chr2_3:41177628-41177647 None:intergenic 35.0%
CAAATTGTTGGAGCAAGAAT+TGG + chr2_3:41177628-41177647 Msa0292240:CDS 35.0%
! TTGGGAGACAAGACTTATTT+TGG + chr2_3:41177647-41177666 Msa0292240:CDS 35.0%
!! TATTTTGGAGGAGATAAGCT+TGG + chr2_3:41177662-41177681 Msa0292240:CDS 35.0%
CACTTATTCCATTCTACACT+TGG + chr2_3:41177699-41177718 Msa0292240:CDS 35.0%
TCAGCTCTACAATTAAGTCA+TGG - chr2_3:41177850-41177869 None:intergenic 35.0%
ATGACTTAATTGTAGAGCTG+AGG + chr2_3:41177849-41177868 Msa0292240:CDS 35.0%
TAAGTGCAGGTTTAGATGAA+CGG + chr2_3:41177902-41177921 Msa0292240:three_prime_UTR 35.0%
CTTACAAAATGCACAACGTT+TGG - chr2_3:41178101-41178120 None:intergenic 35.0%
TACACACTTGTGAATTGTGA+TGG + chr2_3:41178135-41178154 Msa0292240:three_prime_UTR 35.0%
TGAGTGGTTATATATAGGGA+CGG - chr2_3:41178182-41178201 None:intergenic 35.0%
AGAAATGTGTGTGTGGAATG+TGG - chr2_3:41176848-41176867 None:intergenic 40.0%
! ATGTGTGTGAGAGAGTACAA+GGG - chr2_3:41176914-41176933 None:intergenic 40.0%
! AATGTGTGTGAGAGAGTACA+AGG - chr2_3:41176915-41176934 None:intergenic 40.0%
! TTATTCTCTCTGACTAGCCA+TGG + chr2_3:41176978-41176997 Msa0292240:exon 40.0%
AAGTGATTCTGCTTGATTCC+TGG + chr2_3:41177007-41177026 Msa0292240:CDS 40.0%
AGTGATTCTGCTTGATTCCT+GGG + chr2_3:41177008-41177027 Msa0292240:CDS 40.0%
ATTCTGAGTCTCATGCCAAA+TGG - chr2_3:41177039-41177058 None:intergenic 40.0%
AGAATAGCCCTAGCTGAAAA+GGG + chr2_3:41177054-41177073 Msa0292240:CDS 40.0%
! CTTGATACCCTTTTCAGCTA+GGG - chr2_3:41177064-41177083 None:intergenic 40.0%
! CAGGGATTTTCTTGTGAACA+GGG - chr2_3:41177143-41177162 None:intergenic 40.0%
! ACAGGGATTTTCTTGTGAAC+AGG - chr2_3:41177144-41177163 None:intergenic 40.0%
TAAGGATCAGAAGGCAACAA+AGG - chr2_3:41177246-41177265 None:intergenic 40.0%
GATCTCTGATAAGGATCAGA+AGG - chr2_3:41177255-41177274 None:intergenic 40.0%
! CTAGCTTGTGATCTCTGATA+AGG - chr2_3:41177264-41177283 None:intergenic 40.0%
CTTATCAGAGATCACAAGCT+AGG + chr2_3:41177262-41177281 Msa0292240:CDS 40.0%
! TTCTTGCTCTTCTCCCTTTT+TGG - chr2_3:41177579-41177598 None:intergenic 40.0%
!!! GGAGACAAGACTTATTTTGG+AGG + chr2_3:41177650-41177669 Msa0292240:CDS 40.0%
CTCTACATTGATGTTGCCAA+AGG - chr2_3:41177741-41177760 None:intergenic 40.0%
TGGCAACATCAATGTAGAGA+AGG + chr2_3:41177742-41177761 Msa0292240:CDS 40.0%
AATGCCCTAAGTTCATTGCT+TGG + chr2_3:41177765-41177784 Msa0292240:CDS 40.0%
ATGCCCTAAGTTCATTGCTT+GGG + chr2_3:41177766-41177785 Msa0292240:CDS 40.0%
CTCAATCTGCATACATCTCT+TGG - chr2_3:41177792-41177811 None:intergenic 40.0%
TTCAAAGTCTCTTCCTGATC+AGG + chr2_3:41177817-41177836 Msa0292240:CDS 40.0%
AATTGTAGAGCTGAGGAAGA+CGG + chr2_3:41177856-41177875 Msa0292240:CDS 40.0%
GTTTAGATGAACGGTGAGTT+TGG + chr2_3:41177911-41177930 Msa0292240:three_prime_UTR 40.0%
TGGTTATATATAGGGACGGA+GGG - chr2_3:41178178-41178197 None:intergenic 40.0%
AGAAATGTGTGTGTGGAATG+TGG - chr2_3:41176848-41176867 None:intergenic 40.0%
! ATGTGTGTGAGAGAGTACAA+GGG - chr2_3:41176914-41176933 None:intergenic 40.0%
! AATGTGTGTGAGAGAGTACA+AGG - chr2_3:41176915-41176934 None:intergenic 40.0%
! TTATTCTCTCTGACTAGCCA+TGG + chr2_3:41176978-41176997 Msa0292240:exon 40.0%
AAGTGATTCTGCTTGATTCC+TGG + chr2_3:41177007-41177026 Msa0292240:CDS 40.0%
AGTGATTCTGCTTGATTCCT+GGG + chr2_3:41177008-41177027 Msa0292240:CDS 40.0%
ATTCTGAGTCTCATGCCAAA+TGG - chr2_3:41177039-41177058 None:intergenic 40.0%
AGAATAGCCCTAGCTGAAAA+GGG + chr2_3:41177054-41177073 Msa0292240:CDS 40.0%
! CTTGATACCCTTTTCAGCTA+GGG - chr2_3:41177064-41177083 None:intergenic 40.0%
! CAGGGATTTTCTTGTGAACA+GGG - chr2_3:41177143-41177162 None:intergenic 40.0%
! ACAGGGATTTTCTTGTGAAC+AGG - chr2_3:41177144-41177163 None:intergenic 40.0%
TAAGGATCAGAAGGCAACAA+AGG - chr2_3:41177246-41177265 None:intergenic 40.0%
GATCTCTGATAAGGATCAGA+AGG - chr2_3:41177255-41177274 None:intergenic 40.0%
! CTAGCTTGTGATCTCTGATA+AGG - chr2_3:41177264-41177283 None:intergenic 40.0%
CTTATCAGAGATCACAAGCT+AGG + chr2_3:41177262-41177281 Msa0292240:CDS 40.0%
! TTCTTGCTCTTCTCCCTTTT+TGG - chr2_3:41177579-41177598 None:intergenic 40.0%
!!! GGAGACAAGACTTATTTTGG+AGG + chr2_3:41177650-41177669 Msa0292240:CDS 40.0%
CTCTACATTGATGTTGCCAA+AGG - chr2_3:41177741-41177760 None:intergenic 40.0%
TGGCAACATCAATGTAGAGA+AGG + chr2_3:41177742-41177761 Msa0292240:CDS 40.0%
AATGCCCTAAGTTCATTGCT+TGG + chr2_3:41177765-41177784 Msa0292240:CDS 40.0%
ATGCCCTAAGTTCATTGCTT+GGG + chr2_3:41177766-41177785 Msa0292240:CDS 40.0%
CTCAATCTGCATACATCTCT+TGG - chr2_3:41177792-41177811 None:intergenic 40.0%
TTCAAAGTCTCTTCCTGATC+AGG + chr2_3:41177817-41177836 Msa0292240:CDS 40.0%
AATTGTAGAGCTGAGGAAGA+CGG + chr2_3:41177856-41177875 Msa0292240:CDS 40.0%
GTTTAGATGAACGGTGAGTT+TGG + chr2_3:41177911-41177930 Msa0292240:three_prime_UTR 40.0%
TGGTTATATATAGGGACGGA+GGG - chr2_3:41178178-41178197 None:intergenic 40.0%
AGGAAGGAATAGTGACTGTG+AGG - chr2_3:41176822-41176841 None:intergenic 45.0%
GTGTGGAATGTGGAATAGGA+AGG - chr2_3:41176838-41176857 None:intergenic 45.0%
GTGTGTGTGGAATGTGGAAT+AGG - chr2_3:41176842-41176861 None:intergenic 45.0%
CAGAATCACTTCATCAGCCA+TGG - chr2_3:41176998-41177017 None:intergenic 45.0%
CAGAATAGCCCTAGCTGAAA+AGG + chr2_3:41177053-41177072 Msa0292240:CDS 45.0%
! GCTTGATACCCTTTTCAGCT+AGG - chr2_3:41177065-41177084 None:intergenic 45.0%
AGAGATCACAAGCTAGGTTC+TGG + chr2_3:41177268-41177287 Msa0292240:CDS 45.0%
GAGATCACAAGCTAGGTTCT+GGG + chr2_3:41177269-41177288 Msa0292240:CDS 45.0%
ATGAAGGTGGAAGGAACCTT+TGG + chr2_3:41177552-41177571 Msa0292240:CDS 45.0%
TGAAGGTGGAAGGAACCTTT+GGG + chr2_3:41177553-41177572 Msa0292240:CDS 45.0%
AAGGAACCTTTGGGCCAAAA+AGG + chr2_3:41177562-41177581 Msa0292240:CDS 45.0%
AGGAACCTTTGGGCCAAAAA+GGG + chr2_3:41177563-41177582 Msa0292240:CDS 45.0%
TGGCCCAAGCAATGAACTTA+GGG - chr2_3:41177772-41177791 None:intergenic 45.0%
TTGGCCCAAGCAATGAACTT+AGG - chr2_3:41177773-41177792 None:intergenic 45.0%
GTCTCTTCCTGATCAGGATA+AGG + chr2_3:41177823-41177842 Msa0292240:CDS 45.0%
TCATGGACCTTATCCTGATC+AGG - chr2_3:41177833-41177852 None:intergenic 45.0%
ATTGTAGAGCTGAGGAAGAC+GGG + chr2_3:41177857-41177876 Msa0292240:CDS 45.0%
!! AGGAAGACGGGTTATTGAGT+AGG + chr2_3:41177869-41177888 Msa0292240:exon 45.0%
!! AGACGGGTTATTGAGTAGGT+TGG + chr2_3:41177873-41177892 Msa0292240:exon 45.0%
AGGTTGGAGATGTTAAGTGC+AGG + chr2_3:41177889-41177908 Msa0292240:three_prime_UTR 45.0%
GTGGTTATATATAGGGACGG+AGG - chr2_3:41178179-41178198 None:intergenic 45.0%
AGGAAGGAATAGTGACTGTG+AGG - chr2_3:41176822-41176841 None:intergenic 45.0%
GTGTGGAATGTGGAATAGGA+AGG - chr2_3:41176838-41176857 None:intergenic 45.0%
GTGTGTGTGGAATGTGGAAT+AGG - chr2_3:41176842-41176861 None:intergenic 45.0%
CAGAATCACTTCATCAGCCA+TGG - chr2_3:41176998-41177017 None:intergenic 45.0%
CAGAATAGCCCTAGCTGAAA+AGG + chr2_3:41177053-41177072 Msa0292240:CDS 45.0%
! GCTTGATACCCTTTTCAGCT+AGG - chr2_3:41177065-41177084 None:intergenic 45.0%
AGAGATCACAAGCTAGGTTC+TGG + chr2_3:41177268-41177287 Msa0292240:CDS 45.0%
GAGATCACAAGCTAGGTTCT+GGG + chr2_3:41177269-41177288 Msa0292240:CDS 45.0%
ATGAAGGTGGAAGGAACCTT+TGG + chr2_3:41177552-41177571 Msa0292240:CDS 45.0%
TGAAGGTGGAAGGAACCTTT+GGG + chr2_3:41177553-41177572 Msa0292240:CDS 45.0%
AAGGAACCTTTGGGCCAAAA+AGG + chr2_3:41177562-41177581 Msa0292240:CDS 45.0%
AGGAACCTTTGGGCCAAAAA+GGG + chr2_3:41177563-41177582 Msa0292240:CDS 45.0%
TGGCCCAAGCAATGAACTTA+GGG - chr2_3:41177772-41177791 None:intergenic 45.0%
TTGGCCCAAGCAATGAACTT+AGG - chr2_3:41177773-41177792 None:intergenic 45.0%
GTCTCTTCCTGATCAGGATA+AGG + chr2_3:41177823-41177842 Msa0292240:CDS 45.0%
TCATGGACCTTATCCTGATC+AGG - chr2_3:41177833-41177852 None:intergenic 45.0%
ATTGTAGAGCTGAGGAAGAC+GGG + chr2_3:41177857-41177876 Msa0292240:CDS 45.0%
!! AGGAAGACGGGTTATTGAGT+AGG + chr2_3:41177869-41177888 Msa0292240:exon 45.0%
!! AGACGGGTTATTGAGTAGGT+TGG + chr2_3:41177873-41177892 Msa0292240:exon 45.0%
AGGTTGGAGATGTTAAGTGC+AGG + chr2_3:41177889-41177908 Msa0292240:three_prime_UTR 45.0%
GTGGTTATATATAGGGACGG+AGG - chr2_3:41178179-41178198 None:intergenic 45.0%
!! TATTATATTATGTAATAAAA+AGG + chr2_3:41178063-41178082 Msa0292240:three_prime_UTR 5.0%
!! TATTATATTATGTAATAAAA+AGG + chr2_3:41178063-41178082 Msa0292240:three_prime_UTR 5.0%
GATTCCTGGGCAAGTCCATT+TGG + chr2_3:41177021-41177040 Msa0292240:CDS 50.0%
!! CTTCTCCCTTTTTGGCCCAA+AGG - chr2_3:41177571-41177590 None:intergenic 50.0%
GATTCCTGGGCAAGTCCATT+TGG + chr2_3:41177021-41177040 Msa0292240:CDS 50.0%
!! CTTCTCCCTTTTTGGCCCAA+AGG - chr2_3:41177571-41177590 None:intergenic 50.0%
! CATGCCAAATGGACTTGCCC+AGG - chr2_3:41177028-41177047 None:intergenic 55.0%
! CATGCCAAATGGACTTGCCC+AGG - chr2_3:41177028-41177047 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 41176762 41178228 41176762 ID=Msa0292240;Name=Msa0292240
chr2_3 mRNA 41176762 41178228 41176762 ID=Msa0292240-mRNA-1;Parent=Msa0292240;Name=Msa0292240-mRNA-1;_AED=0.02;_eAED=0.02;_QI=235|1|1|1|1|1|2|342|217
chr2_3 exon 41176762 41177311 41176762 ID=Msa0292240-mRNA-1:exon:13238;Parent=Msa0292240-mRNA-1
chr2_3 exon 41177548 41178228 41177548 ID=Msa0292240-mRNA-1:exon:13239;Parent=Msa0292240-mRNA-1
chr2_3 five_prime_UTR 41176762 41176996 41176762 ID=Msa0292240-mRNA-1:five_prime_utr;Parent=Msa0292240-mRNA-1
chr2_3 CDS 41176997 41177311 41176997 ID=Msa0292240-mRNA-1:cds;Parent=Msa0292240-mRNA-1
chr2_3 CDS 41177548 41177886 41177548 ID=Msa0292240-mRNA-1:cds;Parent=Msa0292240-mRNA-1
chr2_3 three_prime_UTR 41177887 41178228 41177887 ID=Msa0292240-mRNA-1:three_prime_utr;Parent=Msa0292240-mRNA-1
Gene Sequence

>Msa0292240

ATGGCTGATGAAGTGATTCTGCTTGATTCCTGGGCAAGTCCATTTGGCATGAGACTCAGAATAGCCCTAGCTGAAAAGGGTATCAAGCATGAGTACAAAGAAGAAGATCTAAGTAACAAAAGCCCTTTGTTGTTACAAATGAACCCTGTTCACAAGAAAATCCCTGTTCTGATTCATAACGGTAAACCTATTTGTGAATCTTTAGTTGCTGTTCAGTATATTGATGAGGTTTGGAATGAGAAATCTCCTTTGTTGCCTTCTGATCCTTATCAGAGATCACAAGCTAGGTTCTGGGCTGATTATGTTGATAAGAAGATATATGAAGGTGGAAGGAACCTTTGGGCCAAAAAGGGAGAAGAGCAAGAAGCTGCCAAGAAAGAATTCATAGATGTCCTCAAATTGTTGGAGCAAGAATTGGGAGACAAGACTTATTTTGGAGGAGATAAGCTTGGTTTTGTTGATGTAGCACTTATTCCATTCTACACTTGGTTTAAAAGCTATGAGACCTTTGGCAACATCAATGTAGAGAAGGAATGCCCTAAGTTCATTGCTTGGGCCAAGAGATGTATGCAGATTGAGAGTGTTTCAAAGTCTCTTCCTGATCAGGATAAGGTCCATGACTTAATTGTAGAGCTGAGGAAGACGGGTTATTGA
Protein sequence

>Msa0292240

MADEVILLDSWASPFGMRLRIALAEKGIKHEYKEEDLSNKSPLLLQMNPVHKKIPVLIHNGKPICESLVAVQYIDEVWNEKSPLLPSDPYQRSQARFWADYVDKKIYEGGRNLWAKKGEEQEAAKKEFIDVLKLLEQELGDKTYFGGDKLGFVDVALIPFYTWFKSYETFGNINVEKECPKFIAWAKRCMQIESVSKSLPDQDKVHDLIVELRKTGY*