Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294220 | Q02735.1 | 100.000 | 966 | 0 | 0 | 1 | 966 | 1 | 966 | 0.0 | 1999 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294220 | sp|Q02735|CAPP_MEDSA | 100.000 | 966 | 0 | 0 | 1 | 966 | 1 | 966 | 0.0 | 1999 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294220 | G7IH71 | 99.896 | 966 | 1 | 0 | 1 | 966 | 1 | 966 | 0.0 | 1995 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012790 | Msa0294220 | 0.813690 | 2.253093e-51 | -8.615850e-47 |
| Msa0061590 | Msa0294220 | 0.805581 | 1.245557e-49 | -8.615850e-47 |
| Msa0106110 | Msa0294220 | 0.807673 | 4.505347e-50 | -8.615850e-47 |
| Msa0152640 | Msa0294220 | 0.805418 | 1.348037e-49 | -8.615850e-47 |
| Msa0152660 | Msa0294220 | 0.817631 | 2.983913e-52 | -8.615850e-47 |
| Msa0214830 | Msa0294220 | 0.923017 | 4.618066e-89 | -8.615850e-47 |
| Msa0294220 | Msa0332790 | 0.834015 | 3.826498e-56 | -8.615850e-47 |
| Msa0294220 | Msa0437460 | 0.907749 | 3.620871e-81 | -8.615850e-47 |
| Msa0294220 | Msa0677840 | -0.800858 | 1.182970e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294220 | MtrunA17_Chr2g0315891 | 99.896 | 966 | 1 | 0 | 1 | 966 | 1 | 966 | 0.0 | 1995 |
| Msa0294220 | MtrunA17_Chr8g0360571 | 91.003 | 967 | 86 | 1 | 1 | 966 | 1 | 967 | 0.0 | 1814 |
| Msa0294220 | MtrunA17_Chr2g0325821 | 85.227 | 968 | 139 | 3 | 1 | 966 | 1 | 966 | 0.0 | 1692 |
| Msa0294220 | MtrunA17_Chr4g0041131 | 84.161 | 966 | 150 | 2 | 2 | 966 | 3 | 966 | 0.0 | 1688 |
| Msa0294220 | MtrunA17_Chr1g0198921 | 45.208 | 626 | 290 | 6 | 359 | 966 | 449 | 1039 | 5.50e-168 | 518 |
| Msa0294220 | MtrunA17_Chr1g0198921 | 38.603 | 272 | 154 | 5 | 76 | 347 | 71 | 329 | 1.87e-48 | 187 |
| Msa0294220 | MtrunA17_Chr0c01g0489521 | 45.925 | 638 | 280 | 8 | 360 | 966 | 549 | 1152 | 2.77e-167 | 520 |
| Msa0294220 | MtrunA17_Chr0c01g0489521 | 32.682 | 358 | 207 | 8 | 33 | 369 | 62 | 406 | 1.48e-45 | 178 |
| Msa0294220 | MtrunA17_Chr1g0148101 | 60.317 | 378 | 84 | 7 | 461 | 838 | 1 | 312 | 3.70e-139 | 418 |
| Msa0294220 | MtrunA17_Chr1g0148111 | 45.455 | 132 | 30 | 4 | 337 | 428 | 9 | 138 | 1.47e-21 | 92.4 |
| Msa0294220 | MtrunA17_Chr1g0148091 | 82.353 | 51 | 9 | 0 | 916 | 966 | 1 | 51 | 1.58e-20 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294220 | AT1G53310.2 | 85.021 | 968 | 142 | 3 | 1 | 966 | 1 | 967 | 0.0 | 1712 |
| Msa0294220 | AT1G53310.1 | 85.021 | 968 | 142 | 3 | 1 | 966 | 1 | 967 | 0.0 | 1712 |
| Msa0294220 | AT1G53310.3 | 85.021 | 968 | 142 | 3 | 1 | 966 | 1 | 967 | 0.0 | 1712 |
| Msa0294220 | AT3G14940.1 | 85.139 | 969 | 140 | 4 | 1 | 966 | 1 | 968 | 0.0 | 1705 |
| Msa0294220 | AT3G14940.2 | 85.139 | 969 | 140 | 4 | 1 | 966 | 1 | 968 | 0.0 | 1705 |
| Msa0294220 | AT2G42600.2 | 83.230 | 966 | 156 | 5 | 2 | 966 | 3 | 963 | 0.0 | 1655 |
| Msa0294220 | AT2G42600.1 | 83.230 | 966 | 156 | 5 | 2 | 966 | 3 | 963 | 0.0 | 1655 |
| Msa0294220 | AT2G42600.3 | 83.230 | 966 | 156 | 5 | 2 | 966 | 3 | 963 | 0.0 | 1655 |
| Msa0294220 | AT1G68750.1 | 46.278 | 618 | 283 | 5 | 365 | 966 | 448 | 1032 | 6.50e-175 | 536 |
| Msa0294220 | AT1G68750.1 | 35.032 | 314 | 182 | 5 | 35 | 340 | 23 | 322 | 1.21e-46 | 182 |
| Msa0294220 | AT3G42628.1 | 83.721 | 43 | 7 | 0 | 2 | 44 | 3 | 45 | 2.15e-15 | 71.2 |
Find 251 sgRNAs with CRISPR-Local
Find 372 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACACGGCGAAGAAATTT+AGG | 0.146316 | 2_3:-45986160 | None:intergenic |
| GCAGAACACTGGTTAAATTT+TGG | 0.162246 | 2_3:+45989343 | Msa0294220:exon |
| ATTACCAAACATTTGGAAAT+TGG | 0.181986 | 2_3:+45987243 | Msa0294220:CDS |
| TTGAGGCAAGTTTCCACTTT+TGG | 0.188224 | 2_3:+45987156 | Msa0294220:CDS |
| CCAAGCTCTTCAAGTTTCTT+AGG | 0.203670 | 2_3:-45985393 | None:intergenic |
| AGAGATCCGTGAATTGTTTC+TGG | 0.211569 | 2_3:-45987819 | None:intergenic |
| ACAATCAATGGCCTTTCTTT+AGG | 0.212782 | 2_3:+45988488 | Msa0294220:CDS |
| ATCTCTAATTTCATCGGTTT+GGG | 0.213025 | 2_3:-45987355 | None:intergenic |
| ATGATTGGATATTCTGATTC+AGG | 0.219510 | 2_3:+45987630 | Msa0294220:CDS |
| TGTAGGCTTGGAAAACATTA+AGG | 0.228524 | 2_3:-45989142 | None:intergenic |
| AACAACGGAACGACTCTTAA+TGG | 0.230787 | 2_3:-45987510 | None:intergenic |
| CAGCAGACTCTTTCGATATT+GGG | 0.240167 | 2_3:-45989211 | None:intergenic |
| AAGGCGCGCCATTCTGGTTT+TGG | 0.252834 | 2_3:-45987963 | None:intergenic |
| CAAAGGATCTGTGGCCATTT+GGG | 0.253225 | 2_3:+45988590 | Msa0294220:CDS |
| GTTACTTCCATGAAACAATT+TGG | 0.256834 | 2_3:+45986128 | Msa0294220:CDS |
| CAATCAATGGCCTTTCTTTA+GGG | 0.264660 | 2_3:+45988489 | Msa0294220:CDS |
| GTGAGGAACACTTGTGCTTT+AGG | 0.265728 | 2_3:+45987883 | Msa0294220:CDS |
| CACCCATCCAAGAAGAAAAT+TGG | 0.268655 | 2_3:-45986240 | None:intergenic |
| CATCTCTAATTTCATCGGTT+TGG | 0.272165 | 2_3:-45987356 | None:intergenic |
| TCCATCAAGGCGCGCCATTC+TGG | 0.274267 | 2_3:-45987969 | None:intergenic |
| ATCAAAGTCGCACAGAAATT+TGG | 0.275537 | 2_3:+45987711 | Msa0294220:CDS |
| CGCACCTCCACCTTATAGTT+TGG | 0.300489 | 2_3:-45989185 | None:intergenic |
| TTGGTGAATGTGGCTTCTTC+AGG | 0.316205 | 2_3:-45986902 | None:intergenic |
| CCACTAGGCCTTCTCTTTGC+CGG | 0.317888 | 2_3:-45988319 | None:intergenic |
| CTTCCAGTATGGTTGGGCTT+TGG | 0.322162 | 2_3:+45988403 | Msa0294220:CDS |
| TCAGCAGACTCTTTCGATAT+TGG | 0.323283 | 2_3:-45989212 | None:intergenic |
| TACAATTGATTTAGTTGAAA+TGG | 0.331280 | 2_3:+45988513 | Msa0294220:CDS |
| TGCAGCATGGCAGCTATATA+AGG | 0.339434 | 2_3:+45987674 | Msa0294220:CDS |
| TCAAAGGATCTGTGGCCATT+TGG | 0.340214 | 2_3:+45988589 | Msa0294220:CDS |
| GGATCCAATTTCCAAATGTT+TGG | 0.341456 | 2_3:-45987247 | None:intergenic |
| CACTTGTAAGGCTTGATATA+AGG | 0.341882 | 2_3:+45987184 | Msa0294220:CDS |
| GCAATTGATGTTATGTTTCA+AGG | 0.346499 | 2_3:+45989558 | Msa0294220:three_prime_UTR |
| CAAGGTTTCATCTTCCAGTA+TGG | 0.346842 | 2_3:+45988392 | Msa0294220:CDS |
| CACCCTTCCAAATTGTTTCA+TGG | 0.358578 | 2_3:-45986135 | None:intergenic |
| TCTTCCATGATGCAGAGTTT+TGG | 0.360614 | 2_3:+45986765 | Msa0294220:intron |
| CCATAGACTGGTACATTAAC+CGG | 0.360805 | 2_3:+45987586 | Msa0294220:CDS |
| TGAGTATGATGCTTTGTTGT+TGG | 0.361220 | 2_3:+45984628 | Msa0294220:CDS |
| CTTTCTTCAACTTGTTCCTT+CGG | 0.361856 | 2_3:-45985524 | None:intergenic |
| GGATGCCATTACCAAACATT+TGG | 0.362761 | 2_3:+45987236 | Msa0294220:CDS |
| GCCAGCAGCAATACCCTTCA+TGG | 0.362914 | 2_3:-45989318 | None:intergenic |
| GTCACTTCAGGAGTCACTCT+TGG | 0.368265 | 2_3:-45986371 | None:intergenic |
| CCAGGAGCATATTCACTTGT+TGG | 0.371381 | 2_3:-45989272 | None:intergenic |
| ACCAGAATGGCGCGCCTTGA+TGG | 0.372526 | 2_3:+45987968 | Msa0294220:CDS |
| CAAACATCCCTTGTCACTTC+AGG | 0.380888 | 2_3:-45986383 | None:intergenic |
| TTGGATAAGAGGAGCATTGT+AGG | 0.385728 | 2_3:-45986221 | None:intergenic |
| CTTCTCAACTGTTCCCCAAA+TGG | 0.387585 | 2_3:-45988604 | None:intergenic |
| TGTACATCTCTTGCAGCATA+TGG | 0.405277 | 2_3:-45988468 | None:intergenic |
| CTTCGATGCTCACCTCCCTT+TGG | 0.405426 | 2_3:-45985920 | None:intergenic |
| GATCCGTGATCCAAACTATA+AGG | 0.406278 | 2_3:+45989175 | Msa0294220:CDS |
| ATCTCATCTTGTGGAGTTGG+TGG | 0.407167 | 2_3:-45986091 | None:intergenic |
| CTGAGTCTTTGCTTCAAGTA+GGG | 0.409192 | 2_3:-45989095 | None:intergenic |
| TGATGCACAGCTTAGACAAT+TGG | 0.412676 | 2_3:+45984571 | Msa0294220:CDS |
| GCTCCAAAGCCCAACCATAC+TGG | 0.412953 | 2_3:-45988406 | None:intergenic |
| TTTCATCTTCCAGTATGGTT+GGG | 0.413439 | 2_3:+45988397 | Msa0294220:CDS |
| TGAGTCTGCTCCTGCTGCAT+TGG | 0.420359 | 2_3:+45987551 | Msa0294220:CDS |
| AACTGCACCGTCTGATGTGC+TGG | 0.422950 | 2_3:+45987449 | Msa0294220:CDS |
| AATTTCCAAATGTTTGGTAA+TGG | 0.423777 | 2_3:-45987241 | None:intergenic |
| CTCATCTCATCTTGTGGAGT+TGG | 0.434057 | 2_3:-45986094 | None:intergenic |
| ATTTCTTCGCCGTGTTGATA+CGG | 0.434747 | 2_3:+45986165 | Msa0294220:CDS |
| GAAGTTGCAAAACACTATAT+AGG | 0.436809 | 2_3:+45986633 | Msa0294220:CDS |
| GTATTGCAGCACTGAATGAT+AGG | 0.437095 | 2_3:+45988557 | Msa0294220:CDS |
| AACTAAGAAACTCCTACTTC+AGG | 0.437226 | 2_3:+45988639 | Msa0294220:CDS |
| CTGAACCTCTTCAGCTAAGT+TGG | 0.439952 | 2_3:-45985490 | None:intergenic |
| AAGTGAATATGCTCCTGGTT+TGG | 0.445415 | 2_3:+45989277 | Msa0294220:CDS |
| CCGGTTAATGTACCAGTCTA+TGG | 0.445998 | 2_3:-45987586 | None:intergenic |
| GAACTTCCATCTGACAACTT+TGG | 0.446074 | 2_3:+45987405 | Msa0294220:CDS |
| CAAGAAGAAAATTGGATAAG+AGG | 0.446279 | 2_3:-45986232 | None:intergenic |
| GTTTCATCTTCCAGTATGGT+TGG | 0.446720 | 2_3:+45988396 | Msa0294220:CDS |
| TCATTCAGTGCTGCAATACC+AGG | 0.448349 | 2_3:-45988553 | None:intergenic |
| CGATTCCATGGATCTTTGCC+TGG | 0.449147 | 2_3:+45988362 | Msa0294220:CDS |
| CCTAAGAAACTTGAAGAGCT+TGG | 0.450572 | 2_3:+45985393 | Msa0294220:CDS |
| ATCCTACCATACTCCATCTC+TGG | 0.451448 | 2_3:-45988280 | None:intergenic |
| TCTCTTCGTGTGACAGTTCA+AGG | 0.453254 | 2_3:+45987837 | Msa0294220:CDS |
| AACATTAAGGGTTGTAATGT+AGG | 0.455420 | 2_3:-45989129 | None:intergenic |
| TCATCGGTTTGGGGTAGGTC+AGG | 0.455429 | 2_3:-45987345 | None:intergenic |
| TGTCATAAGAATTTCACATC+AGG | 0.459251 | 2_3:+45989489 | Msa0294220:three_prime_UTR |
| TTGATCACAAGTTTCGATGC+AGG | 0.461534 | 2_3:+45985420 | Msa0294220:CDS |
| ACACGGTACGGTTCGTTCAA+AGG | 0.463809 | 2_3:-45986797 | None:intergenic |
| TCCGTTTCAATGTGTAGGCT+TGG | 0.466175 | 2_3:-45989154 | None:intergenic |
| CAACACGGCGAAGAAATTTA+GGG | 0.471771 | 2_3:-45986159 | None:intergenic |
| GTAGGCTTGGAAAACATTAA+GGG | 0.474938 | 2_3:-45989141 | None:intergenic |
| GCTACACCAGAGATGGAGTA+TGG | 0.477983 | 2_3:+45988274 | Msa0294220:CDS |
| CAAGTTAAGCATGTGTGAAA+AGG | 0.479006 | 2_3:-45985466 | None:intergenic |
| ATTTGTGTGGCAGCAAAGTA+AGG | 0.479166 | 2_3:-45989528 | None:intergenic |
| ATACCGTTCAATTGTGTTCA+AGG | 0.481229 | 2_3:+45988019 | Msa0294220:CDS |
| AACAACCGAGCCAATGCAGC+AGG | 0.482906 | 2_3:-45987561 | None:intergenic |
| AGCAGACTCTTTCGATATTG+GGG | 0.485836 | 2_3:-45989210 | None:intergenic |
| CTTCTTGCTTCCCATCGATC+CGG | 0.486800 | 2_3:-45987605 | None:intergenic |
| GGGAAGCAAGAAGTTATGAT+TGG | 0.487828 | 2_3:+45987615 | Msa0294220:CDS |
| TTCAACGTGAATGCAAAGTC+AGG | 0.489074 | 2_3:+45987484 | Msa0294220:CDS |
| TAAAACATCTCTAATTTCAT+CGG | 0.489190 | 2_3:-45987361 | None:intergenic |
| CTCGGTTGTTCTCCATAGAC+TGG | 0.489360 | 2_3:+45987574 | Msa0294220:CDS |
| TCAAGCTCCTGCTTATCATC+AGG | 0.491418 | 2_3:-45985888 | None:intergenic |
| AAACACTGCGTGCGATTCCA+TGG | 0.493116 | 2_3:+45988350 | Msa0294220:CDS |
| CACGGTCGCGGTGGAACTGT+TGG | 0.493136 | 2_3:+45987753 | Msa0294220:CDS |
| CCACAAGATGAGATGAGGGC+TGG | 0.493683 | 2_3:+45986100 | Msa0294220:CDS |
| AACCGTACCGTGTTGTACTC+GGG | 0.493990 | 2_3:+45986807 | Msa0294220:CDS |
| CTTCCATGAAACAATTTGGA+AGG | 0.494194 | 2_3:+45986132 | Msa0294220:CDS |
| TGCTACAATGGCAAACAAGA+TGG | 0.494492 | 2_3:+45984532 | Msa0294220:exon |
| TCCAAGCCTACACATTGAAA+CGG | 0.494703 | 2_3:+45989153 | Msa0294220:CDS |
| AATGTTACAAGTTCATCAGC+TGG | 0.496300 | 2_3:-45989245 | None:intergenic |
| TACAAGTGACAGTCCAAAAG+TGG | 0.497201 | 2_3:-45987169 | None:intergenic |
| TTCGTATCTAACTAACTGTC+TGG | 0.497500 | 2_3:+45984094 | Msa0294220:five_prime_UTR |
| CTGCTCCTGCTGCATTGGCT+CGG | 0.497705 | 2_3:+45987556 | Msa0294220:CDS |
| TCCTCTTGATTTCATCAGTA+CGG | 0.497917 | 2_3:-45986066 | None:intergenic |
| CACAAGATGAGATGAGGGCT+GGG | 0.497996 | 2_3:+45986101 | Msa0294220:CDS |
| CCAGCCCTCATCTCATCTTG+TGG | 0.499983 | 2_3:-45986100 | None:intergenic |
| CTTTGCTTCAAAAGCATGGA+AGG | 0.502966 | 2_3:+45985715 | Msa0294220:CDS |
| TCTGAGTCTTTGCTTCAAGT+AGG | 0.504272 | 2_3:-45989096 | None:intergenic |
| TGTCTGAGTTGATTGGCAAA+AGG | 0.504480 | 2_3:+45987310 | Msa0294220:CDS |
| AAGAAGATGATGACAAGGAA+TGG | 0.504736 | 2_3:-45984070 | None:intergenic |
| TGCAAGAGATGTACAATCAA+TGG | 0.505277 | 2_3:+45988476 | Msa0294220:CDS |
| CTTGGCCAACTTAGCTGAAG+AGG | 0.506190 | 2_3:+45985485 | Msa0294220:CDS |
| CTCATCTACATTGGTGAATG+TGG | 0.507953 | 2_3:-45986912 | None:intergenic |
| GAACCGTACCGTGTTGTACT+CGG | 0.508804 | 2_3:+45986806 | Msa0294220:CDS |
| TTCCTCAATGTCAGATTCAG+TGG | 0.510077 | 2_3:-45985574 | None:intergenic |
| CGATCTTTGCTTCAAAAGCA+TGG | 0.510937 | 2_3:+45985711 | Msa0294220:CDS |
| GATATTCTTCAAGATTTACA+TGG | 0.511585 | 2_3:+45984662 | Msa0294220:CDS |
| ACCATGAAGGGTATTGCTGC+TGG | 0.516969 | 2_3:+45989317 | Msa0294220:CDS |
| CGCGGTGGAACTGTTGGAAG+AGG | 0.518552 | 2_3:+45987759 | Msa0294220:CDS |
| CACACTCATTCTTACCATGA+AGG | 0.519808 | 2_3:+45989304 | Msa0294220:CDS |
| CATCACTCCTGATGATAAGC+AGG | 0.520519 | 2_3:+45985881 | Msa0294220:CDS |
| AGTTGAAATGGTGTTTGCCA+AGG | 0.521758 | 2_3:+45988525 | Msa0294220:CDS |
| TAATTTCATCGGTTTGGGGT+AGG | 0.523103 | 2_3:-45987350 | None:intergenic |
| GAAGTTATTGAACAGTCGTT+CGG | 0.523330 | 2_3:+45987861 | Msa0294220:CDS |
| TCTGATTCAGGAAAAGATGC+TGG | 0.523409 | 2_3:+45987642 | Msa0294220:CDS |
| TCAATTGTAACCCTAAAGAA+AGG | 0.525929 | 2_3:-45988499 | None:intergenic |
| GCACACAAGGAAGTTCTTGA+AGG | 0.526801 | 2_3:+45989068 | Msa0294220:CDS |
| ATGAGTGTGTCTTCCAAACC+AGG | 0.529085 | 2_3:-45989290 | None:intergenic |
| CGAAGGAACAAGTTGAAGAA+AGG | 0.530849 | 2_3:+45985525 | Msa0294220:CDS |
| TAAGAACAAGATCAACAGTC+TGG | 0.531606 | 2_3:-45985662 | None:intergenic |
| TGGTACATTAACCGGATCGA+TGG | 0.533161 | 2_3:+45987594 | Msa0294220:CDS |
| AAATTGGATCCTACCAAGAA+TGG | 0.533268 | 2_3:+45987259 | Msa0294220:CDS |
| TTCTTCAGACCATTCTTGGT+AGG | 0.534096 | 2_3:-45987268 | None:intergenic |
| TACAGATCACTCTGTGCTTG+TGG | 0.534200 | 2_3:+45987096 | Msa0294220:CDS |
| TACTGCTCATCCTACTCAGT+CGG | 0.534850 | 2_3:+45985683 | Msa0294220:CDS |
| GAAGCCTTCTTGATTTCTTG+AGG | 0.535692 | 2_3:+45987139 | Msa0294220:CDS |
| ATGAAACCTTGTCTGTGTCC+AGG | 0.535981 | 2_3:-45988380 | None:intergenic |
| ATTTAGACAAGTTGTTCAGA+AGG | 0.538330 | 2_3:+45988432 | Msa0294220:CDS |
| CAAGCTCTCCAAAACCAGAA+TGG | 0.538343 | 2_3:+45987955 | Msa0294220:CDS |
| TGACATGAAGAAATCTCCTC+AGG | 0.539081 | 2_3:+45985617 | Msa0294220:CDS |
| TGATAGGCTCCTAGTTTCAA+AGG | 0.540755 | 2_3:+45988573 | Msa0294220:CDS |
| TCTTCAAGATTTACATGGAG+AGG | 0.543567 | 2_3:+45984667 | Msa0294220:CDS |
| GTGATCTCAAGTAGTGAAGT+GGG | 0.544636 | 2_3:-45984021 | None:intergenic |
| GGAACTGTTGGAAGAGGAGG+TGG | 0.544976 | 2_3:+45987765 | Msa0294220:CDS |
| ATGATGCTTTGTTGTTGGAT+CGG | 0.546489 | 2_3:+45984633 | Msa0294220:CDS |
| TGCAATACCAGGGTCTCCCT+TGG | 0.546742 | 2_3:-45988542 | None:intergenic |
| TCTCGTTATCTCCTAGCTCA+TGG | 0.547220 | 2_3:+45986866 | Msa0294220:CDS |
| GCCACAGATCCTTTGAAACT+AGG | 0.548768 | 2_3:-45988582 | None:intergenic |
| TTCCATGAAACAATTTGGAA+GGG | 0.549164 | 2_3:+45986133 | Msa0294220:CDS |
| ATGGCAGCTATATAAGGCTC+AGG | 0.549987 | 2_3:+45987680 | Msa0294220:CDS |
| TTGCTTATTAGCTAGAATGA+TGG | 0.550086 | 2_3:+45986403 | Msa0294220:CDS |
| AAGCATGTGTGAAAAGGACT+TGG | 0.550629 | 2_3:-45985460 | None:intergenic |
| GTGTTGTACTCGGGGAGGTG+AGG | 0.551990 | 2_3:+45986816 | Msa0294220:CDS |
| TCGGTAGGTGGCTGCACACA+AGG | 0.553697 | 2_3:+45989055 | Msa0294220:intron |
| TGTGTCCAGGCAAAGATCCA+TGG | 0.554133 | 2_3:-45988367 | None:intergenic |
| AGCTTGATGAAGCTCTCCAA+AGG | 0.554366 | 2_3:+45985904 | Msa0294220:CDS |
| CGAAGAAGAAGATGATGACA+AGG | 0.555023 | 2_3:-45984075 | None:intergenic |
| TGGATAAGAGGAGCATTGTA+GGG | 0.558209 | 2_3:-45986220 | None:intergenic |
| CCAACAAGTGAATATGCTCC+TGG | 0.558319 | 2_3:+45989272 | Msa0294220:CDS |
| TTCAGATTGCGCACCGCCGA+AGG | 0.559159 | 2_3:+45985508 | Msa0294220:CDS |
| CACCAGAGATGGAGTATGGT+AGG | 0.560221 | 2_3:+45988278 | Msa0294220:CDS |
| GTTGAAATGGTGTTTGCCAA+GGG | 0.562085 | 2_3:+45988526 | Msa0294220:CDS |
| GATCTGTAGCAGAGTTCAAG+AGG | 0.564012 | 2_3:-45987081 | None:intergenic |
| GAGTATGGTAGGATGAACAT+TGG | 0.564836 | 2_3:+45988289 | Msa0294220:CDS |
| AAAGGATCTGTGGCCATTTG+GGG | 0.569913 | 2_3:+45988591 | Msa0294220:CDS |
| TTGAGACAAGATAGCAAGAT+GGG | 0.570818 | 2_3:-45987793 | None:intergenic |
| CATGTAGGCTACACCAGAGA+TGG | 0.570904 | 2_3:+45988267 | Msa0294220:intron |
| GCTTGATGAAGCTCTCCAAA+GGG | 0.572041 | 2_3:+45985905 | Msa0294220:CDS |
| GAAGTCGACCGGCAAAGAGA+AGG | 0.572412 | 2_3:+45988311 | Msa0294220:CDS |
| CAACCACCAGAAACAATTCA+CGG | 0.572783 | 2_3:+45987813 | Msa0294220:CDS |
| AAAAGATCATTACCTGAAGT+AGG | 0.572972 | 2_3:-45988651 | None:intergenic |
| GATACGGCATTGAAGAACAT+AGG | 0.575177 | 2_3:+45986181 | Msa0294220:CDS |
| TCATCAAGCTTCTCAAACAA+CGG | 0.575573 | 2_3:-45987525 | None:intergenic |
| TTTCACAATAGCCATGAGCT+AGG | 0.576636 | 2_3:-45986877 | None:intergenic |
| AATATATACCTCATCTACAT+TGG | 0.576772 | 2_3:-45986921 | None:intergenic |
| TGAGTCTTTGCTTCAAGTAG+GGG | 0.576932 | 2_3:-45989094 | None:intergenic |
| TTCGCGCAGAAGAACTTCAC+AGG | 0.577091 | 2_3:+45986595 | Msa0294220:CDS |
| GTGTTTGCCAAGGGAGACCC+TGG | 0.577526 | 2_3:+45988535 | Msa0294220:CDS |
| ATACGGCATTGAAGAACATA+GGG | 0.577742 | 2_3:+45986182 | Msa0294220:CDS |
| TGTTTCTTTAGCTTTCTATG+TGG | 0.578871 | 2_3:+45986550 | Msa0294220:intron |
| TCTTCAACTTGTTCCTTCGG+CGG | 0.579027 | 2_3:-45985521 | None:intergenic |
| GACAGCCATCTGATCCATCA+AGG | 0.579385 | 2_3:-45987982 | None:intergenic |
| GATCGACGAACCGACTGAGT+AGG | 0.579937 | 2_3:-45985693 | None:intergenic |
| TGTTGTACTCGGGGAGGTGA+GGG | 0.580569 | 2_3:+45986817 | Msa0294220:CDS |
| GCAGACTCTTTCGATATTGG+GGG | 0.583884 | 2_3:-45989209 | None:intergenic |
| TTTACATGGAGAGGATCTGA+AGG | 0.584089 | 2_3:+45984676 | Msa0294220:CDS |
| TGGAGCCTACATCATTTCGA+TGG | 0.584899 | 2_3:+45987425 | Msa0294220:CDS |
| GATGAACATTGGAAGTCGAC+CGG | 0.586163 | 2_3:+45988300 | Msa0294220:CDS |
| TAGGCTCCAAAGTTGTCAGA+TGG | 0.586422 | 2_3:-45987411 | None:intergenic |
| GGGTTGTAATGTAGGAATCA+CGG | 0.588570 | 2_3:-45989121 | None:intergenic |
| GAGTGACTCCTGAAGTGACA+AGG | 0.590847 | 2_3:+45986375 | Msa0294220:CDS |
| AATTGCATAACTCATTTGTG+TGG | 0.591035 | 2_3:-45989541 | None:intergenic |
| ACGGATCCGTTTCAATGTGT+AGG | 0.593504 | 2_3:-45989159 | None:intergenic |
| AGTGTTTCAATGCCTCCACT+AGG | 0.593577 | 2_3:-45988334 | None:intergenic |
| CACATTCACCAATGTAGATG+AGG | 0.599597 | 2_3:+45986913 | Msa0294220:CDS |
| CTAACCATGTTCCACGGTCG+CGG | 0.600398 | 2_3:+45987741 | Msa0294220:CDS |
| GGTACATTAACCGGATCGAT+GGG | 0.600405 | 2_3:+45987595 | Msa0294220:CDS |
| ATTTCTGTGCGACTTTGATG+AGG | 0.601219 | 2_3:-45987707 | None:intergenic |
| GGTGATCGTGCAATTGCTGA+TGG | 0.602213 | 2_3:+45987117 | Msa0294220:CDS |
| GTTCCTTGAACACAATTGAA+CGG | 0.603885 | 2_3:-45988022 | None:intergenic |
| TCCTAGTTTCAAAGGATCTG+TGG | 0.604284 | 2_3:+45988581 | Msa0294220:CDS |
| TCTTTGCCTGGACACAGACA+AGG | 0.604450 | 2_3:+45988374 | Msa0294220:CDS |
| AGTTGCCATCGAAATGATGT+AGG | 0.605308 | 2_3:-45987430 | None:intergenic |
| CAACAGTTCCACCGCGACCG+TGG | 0.605980 | 2_3:-45987752 | None:intergenic |
| TCCACCGCGACCGTGGAACA+TGG | 0.607947 | 2_3:-45987745 | None:intergenic |
| GATCCGTGAATTGTTTCTGG+TGG | 0.607988 | 2_3:-45987816 | None:intergenic |
| ACACTCATTCTTACCATGAA+GGG | 0.609673 | 2_3:+45989305 | Msa0294220:CDS |
| TGATCCAAACTATAAGGTGG+AGG | 0.611113 | 2_3:+45989181 | Msa0294220:CDS |
| CCACCTTATAGTTTGGATCA+CGG | 0.612133 | 2_3:-45989178 | None:intergenic |
| GCGCGCCTTGATGGATCAGA+TGG | 0.612286 | 2_3:+45987977 | Msa0294220:CDS |
| GGTGGAACTGTTGGAAGAGG+AGG | 0.614237 | 2_3:+45987762 | Msa0294220:CDS |
| TCTTCAATGCCGTATCAACA+CGG | 0.614898 | 2_3:-45986174 | None:intergenic |
| AACTCCACAAGATGAGATGA+GGG | 0.615837 | 2_3:+45986096 | Msa0294220:CDS |
| CTTGCCTCAAGAAATCAAGA+AGG | 0.616842 | 2_3:-45987143 | None:intergenic |
| ATTCAGGAAAAGATGCTGGA+AGG | 0.617924 | 2_3:+45987646 | Msa0294220:CDS |
| CAACTCCACAAGATGAGATG+AGG | 0.620924 | 2_3:+45986095 | Msa0294220:CDS |
| GTTGAGACAAGATAGCAAGA+TGG | 0.620989 | 2_3:-45987794 | None:intergenic |
| TCCCCGAGTACAACACGGTA+CGG | 0.621017 | 2_3:-45986809 | None:intergenic |
| GATCTCAAGTAGTGAAGTGG+GGG | 0.621579 | 2_3:-45984019 | None:intergenic |
| TAACTGTCTGGCACACAACA+CGG | 0.621667 | 2_3:+45984106 | Msa0294220:five_prime_UTR |
| AACCACTGAATCTGACATTG+AGG | 0.621933 | 2_3:+45985572 | Msa0294220:CDS |
| GAGAGAGTGAATTGCTACAA+TGG | 0.628226 | 2_3:+45984520 | Msa0294220:exon |
| TCCGTACTGATGAAATCAAG+AGG | 0.629528 | 2_3:+45986065 | Msa0294220:CDS |
| CCGTGATCCAAACTATAAGG+TGG | 0.630341 | 2_3:+45989178 | Msa0294220:CDS |
| TCTCTAATTTCATCGGTTTG+GGG | 0.631731 | 2_3:-45987354 | None:intergenic |
| GCTGCTGGCATGCAGAACAC+TGG | 0.632380 | 2_3:+45989332 | Msa0294220:CDS |
| CAGACTCTTTCGATATTGGG+GGG | 0.632969 | 2_3:-45989208 | None:intergenic |
| TGATCGTCACACTGACGTGA+TGG | 0.635177 | 2_3:+45987215 | Msa0294220:CDS |
| GATGGCTGTCATTGCTACTG+AGG | 0.636087 | 2_3:+45987995 | Msa0294220:CDS |
| TGTGATCTCAAGTAGTGAAG+TGG | 0.638532 | 2_3:-45984022 | None:intergenic |
| CCGGCAAAGAGAAGGCCTAG+TGG | 0.639979 | 2_3:+45988319 | Msa0294220:CDS |
| TCAACTGCCAGCACATCAGA+CGG | 0.641429 | 2_3:-45987456 | None:intergenic |
| GACAAGATAGCAAGATGGGT+AGG | 0.642228 | 2_3:-45987789 | None:intergenic |
| ACCATGTTCCACGGTCGCGG+TGG | 0.646894 | 2_3:+45987744 | Msa0294220:CDS |
| ACCGTACCGTGTTGTACTCG+GGG | 0.651324 | 2_3:+45986808 | Msa0294220:CDS |
| CGGAAGTACTCAACAAAACG+TGG | 0.651796 | 2_3:-45988044 | None:intergenic |
| AGTGACTCCTGAAGTGACAA+GGG | 0.652460 | 2_3:+45986376 | Msa0294220:CDS |
| TGATCTCAAGTAGTGAAGTG+GGG | 0.658150 | 2_3:-45984020 | None:intergenic |
| GCAGCTATATAAGGCTCAGG+AGG | 0.660561 | 2_3:+45987683 | Msa0294220:CDS |
| TGATGAAGCTCTCCAAAGGG+AGG | 0.664930 | 2_3:+45985908 | Msa0294220:CDS |
| TATTGAACAGTCGTTCGGTG+AGG | 0.665155 | 2_3:+45987866 | Msa0294220:CDS |
| CATTCAGTGCTGCAATACCA+GGG | 0.670199 | 2_3:-45988552 | None:intergenic |
| ACTGCTGCTACTCTAGAACA+TGG | 0.671177 | 2_3:+45987921 | Msa0294220:CDS |
| GTTAAGCTAACCATGTTCCA+CGG | 0.677295 | 2_3:+45987735 | Msa0294220:CDS |
| GCAAAGAGAAGGCCTAGTGG+AGG | 0.689359 | 2_3:+45988322 | Msa0294220:CDS |
| TCACCTCCCCGAGTACAACA+CGG | 0.690331 | 2_3:-45986814 | None:intergenic |
| ATGGAAGTTCTGCTATGACA+CGG | 0.698167 | 2_3:-45987392 | None:intergenic |
| TGGATGGGTGGTGATCGTGA+CGG | 0.713188 | 2_3:+45986253 | Msa0294220:CDS |
| ATCTCAAGTAGTGAAGTGGG+GGG | 0.718018 | 2_3:-45984018 | None:intergenic |
| GTACCGTGTTGTACTCGGGG+AGG | 0.761838 | 2_3:+45986811 | Msa0294220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATTAAAATTTATATA+GGG | + | chr2_3:45988165-45988184 | Msa0294220:intron | 0.0% |
| !! | TAACATAAAAAAAAAAACAT+AGG | - | chr2_3:45984175-45984194 | None:intergenic | 10.0% |
| !! | ATGAAAAATAATTTAAACAA+CGG | - | chr2_3:45984444-45984463 | None:intergenic | 10.0% |
| !! | ATAAGAAAATTATTTCAATT+TGG | - | chr2_3:45986010-45986029 | None:intergenic | 10.0% |
| !! | TAAAAAAAAAAAATCTTGAA+AGG | + | chr2_3:45986665-45986684 | Msa0294220:intron | 10.0% |
| !! | AAAAAAAAAAAATCTTGAAA+GGG | + | chr2_3:45986666-45986685 | Msa0294220:intron | 10.0% |
| !!! | TTAATTTTAACCATTTTATA+GGG | - | chr2_3:45988155-45988174 | None:intergenic | 10.0% |
| !!! | TTTAATTTTAACCATTTTAT+AGG | - | chr2_3:45988156-45988175 | None:intergenic | 10.0% |
| !! | TAAAATGTTGAATATATTTA+CGG | - | chr2_3:45988680-45988699 | None:intergenic | 10.0% |
| !!! | ATTGAATTTTGTGTTTTTAT+AGG | + | chr2_3:45984496-45984515 | Msa0294220:intron | 15.0% |
| !!! | GTTCTTTAATTTTAATCATT+TGG | + | chr2_3:45984724-45984743 | Msa0294220:intron | 15.0% |
| !!! | TATTGATTTGTAATGTTTTA+AGG | + | chr2_3:45984875-45984894 | Msa0294220:intron | 15.0% |
| !! | AAAAATAAAATACTAAACAC+TGG | - | chr2_3:45984972-45984991 | None:intergenic | 15.0% |
| !! | TGAAAATGTTAATTACAAAA+GGG | - | chr2_3:45986497-45986516 | None:intergenic | 15.0% |
| !! | ATGAAAATGTTAATTACAAA+AGG | - | chr2_3:45986498-45986517 | None:intergenic | 15.0% |
| !! | AAGAAAATAAATCAGTAAAA+TGG | - | chr2_3:45986531-45986550 | None:intergenic | 15.0% |
| !!! | ACAAACATATTTAACATTTT+AGG | + | chr2_3:45988215-45988234 | Msa0294220:intron | 15.0% |
| !!! | TATATTCAACATTTTAGTTT+TGG | + | chr2_3:45988684-45988703 | Msa0294220:intron | 15.0% |
| !! | ATAGCTTATATATAAGAATT+TGG | + | chr2_3:45988909-45988928 | Msa0294220:intron | 15.0% |
| !!! | TCTATTTTTGTAGCATATAT+TGG | - | chr2_3:45983934-45983953 | None:intergenic | 20.0% |
| !!! | ATAACATAACATGTTTTCAT+AGG | + | chr2_3:45984203-45984222 | Msa0294220:intron | 20.0% |
| !! | AAAAAAGAGTAAAACAACAT+AGG | - | chr2_3:45984240-45984259 | None:intergenic | 20.0% |
| !!! | TCAATCTCTTTCATAATTTT+CGG | + | chr2_3:45984343-45984362 | Msa0294220:intron | 20.0% |
| !! | TTTCGAATATACGTTTAATT+AGG | + | chr2_3:45985008-45985027 | Msa0294220:intron | 20.0% |
| !! | AAATCAAACAAAATCGAAAA+AGG | - | chr2_3:45985946-45985965 | None:intergenic | 20.0% |
| !! | AATGTAACATCATTTCAATT+CGG | - | chr2_3:45985973-45985992 | None:intergenic | 20.0% |
| !!! | TCTCATTTTTTAAATCACAT+TGG | - | chr2_3:45986331-45986350 | None:intergenic | 20.0% |
| !! | GAAAATGTTAATTACAAAAG+GGG | - | chr2_3:45986496-45986515 | None:intergenic | 20.0% |
| !!! | ACTATATACAGTACTTTTTA+TGG | + | chr2_3:45986954-45986973 | Msa0294220:intron | 20.0% |
| !! | TAAAACATCTCTAATTTCAT+CGG | - | chr2_3:45987364-45987383 | None:intergenic | 20.0% |
| !! | AGTAAAATGACATTCAAATT+TGG | + | chr2_3:45988111-45988130 | Msa0294220:intron | 20.0% |
| !! | GTAAAATGACATTCAAATTT+GGG | + | chr2_3:45988112-45988131 | Msa0294220:intron | 20.0% |
| !!! | TACAATTGATTTAGTTGAAA+TGG | + | chr2_3:45988513-45988532 | Msa0294220:CDS | 20.0% |
| !! | CAATCTCTTTCATAATTTTC+GGG | + | chr2_3:45984344-45984363 | Msa0294220:intron | 25.0% |
| ! | TGAACACAAAACAAAATCAA+GGG | - | chr2_3:45984409-45984428 | None:intergenic | 25.0% |
| ! | ATGAACACAAAACAAAATCA+AGG | - | chr2_3:45984410-45984429 | None:intergenic | 25.0% |
| !!! | TTGATTTTGTTTTGTGTTCA+TGG | + | chr2_3:45984409-45984428 | Msa0294220:intron | 25.0% |
| !! | TATGTGTTATGTTTTCATGA+AGG | + | chr2_3:45984470-45984489 | Msa0294220:intron | 25.0% |
| !! | ATGTGTTATGTTTTCATGAA+GGG | + | chr2_3:45984471-45984490 | Msa0294220:intron | 25.0% |
| ! | GATATTCTTCAAGATTTACA+TGG | + | chr2_3:45984662-45984681 | Msa0294220:CDS | 25.0% |
| !!! | GGTTCTAAAAGTCAATAATA+TGG | + | chr2_3:45984785-45984804 | Msa0294220:intron | 25.0% |
| ! | CTAAAAGTCAATAATATGGT+TGG | + | chr2_3:45984789-45984808 | Msa0294220:intron | 25.0% |
| !! | TTGATTCTTTTGACAGATTT+TGG | + | chr2_3:45984837-45984856 | Msa0294220:intron | 25.0% |
| !! | TTTGACAGATTTTGGATATT+AGG | + | chr2_3:45984845-45984864 | Msa0294220:intron | 25.0% |
| ! | GATATGAAACATGAACTATT+AGG | + | chr2_3:45985042-45985061 | Msa0294220:intron | 25.0% |
| !!! | ACTTTTTTTGTTCTTTTCAC+AGG | + | chr2_3:45985823-45985842 | Msa0294220:intron | 25.0% |
| !!! | CTTTTTTTGTTCTTTTCACA+GGG | + | chr2_3:45985824-45985843 | Msa0294220:intron | 25.0% |
| ! | AATGAGATAATATATGATGC+AGG | + | chr2_3:45986344-45986363 | Msa0294220:intron | 25.0% |
| ! | TAATTACAAAAGGGGAAAAA+GGG | - | chr2_3:45986488-45986507 | None:intergenic | 25.0% |
| ! | TTAATTACAAAAGGGGAAAA+AGG | - | chr2_3:45986489-45986508 | None:intergenic | 25.0% |
| ! | AATATATACCTCATCTACAT+TGG | - | chr2_3:45986924-45986943 | None:intergenic | 25.0% |
| ! | TAACTCTAGTTAGTATCTTT+CGG | - | chr2_3:45987042-45987061 | None:intergenic | 25.0% |
| ! | AATTTCCAAATGTTTGGTAA+TGG | - | chr2_3:45987244-45987263 | None:intergenic | 25.0% |
| ! | ATTACCAAACATTTGGAAAT+TGG | + | chr2_3:45987243-45987262 | Msa0294220:CDS | 25.0% |
| !!! | GAATGTCATTTTACTTAACA+AGG | - | chr2_3:45988106-45988125 | None:intergenic | 25.0% |
| !!! | TGTTTTTTGACCCTATAAAA+TGG | + | chr2_3:45988142-45988161 | Msa0294220:intron | 25.0% |
| !!! | AGTTTTGGAACAATTTTTAG+CGG | + | chr2_3:45988699-45988718 | Msa0294220:intron | 25.0% |
| ! | AAACTGTTTAAATGATCTGA+TGG | + | chr2_3:45988775-45988794 | Msa0294220:intron | 25.0% |
| ! | ACAAAGACTTAAACTCTATT+TGG | - | chr2_3:45988981-45989000 | None:intergenic | 25.0% |
| !! | GATTTTGTAATCTTCTGTAT+CGG | + | chr2_3:45989036-45989055 | Msa0294220:intron | 25.0% |
| GACATGTTGAATATCATCAA+TGG | - | chr2_3:45984325-45984344 | None:intergenic | 30.0% | |
| CGGGATTTGATTAGAATTTA+TGG | + | chr2_3:45984363-45984382 | Msa0294220:intron | 30.0% | |
| GAACACAAAACAAAATCAAG+GGG | - | chr2_3:45984408-45984427 | None:intergenic | 30.0% | |
| GATCTTGATTATTCACTGTT+TGG | + | chr2_3:45984764-45984783 | Msa0294220:intron | 30.0% | |
| AAGTCAATAATATGGTTGGT+TGG | + | chr2_3:45984793-45984812 | Msa0294220:intron | 30.0% | |
| AACAGAAAAAAGACCTTTAG+AGG | + | chr2_3:45984928-45984947 | Msa0294220:intron | 30.0% | |
| ! | TGAGAATCATTTTCCTCTAA+AGG | - | chr2_3:45984944-45984963 | None:intergenic | 30.0% |
| TGTTATTGTTCTGTGATACA+CGG | + | chr2_3:45985170-45985189 | Msa0294220:intron | 30.0% | |
| ! | GAATGACGGAAAATAATTGT+TGG | - | chr2_3:45985229-45985248 | None:intergenic | 30.0% |
| ! | AGTTGAAGAAAGGTGATTTT+AGG | + | chr2_3:45985535-45985554 | Msa0294220:CDS | 30.0% |
| ! | GTTGAAGAAAGGTGATTTTA+GGG | + | chr2_3:45985536-45985555 | Msa0294220:CDS | 30.0% |
| GTTACTTCCATGAAACAATT+TGG | + | chr2_3:45986128-45986147 | Msa0294220:CDS | 30.0% | |
| TTCCATGAAACAATTTGGAA+GGG | + | chr2_3:45986133-45986152 | Msa0294220:CDS | 30.0% | |
| CAAGAAGAAAATTGGATAAG+AGG | - | chr2_3:45986235-45986254 | None:intergenic | 30.0% | |
| ! | CTCTTATCCAATTTTCTTCT+TGG | + | chr2_3:45986233-45986252 | Msa0294220:CDS | 30.0% |
| ! | TATCCAATTTTCTTCTTGGA+TGG | + | chr2_3:45986237-45986256 | Msa0294220:CDS | 30.0% |
| ! | ATCCAATTTTCTTCTTGGAT+GGG | + | chr2_3:45986238-45986257 | Msa0294220:CDS | 30.0% |
| TTGCTTATTAGCTAGAATGA+TGG | + | chr2_3:45986403-45986422 | Msa0294220:CDS | 30.0% | |
| !! | TGTTTCTTTAGCTTTCTATG+TGG | + | chr2_3:45986550-45986569 | Msa0294220:intron | 30.0% |
| ! | TTTTGCAACTTCATCTTTCT+TGG | - | chr2_3:45986625-45986644 | None:intergenic | 30.0% |
| GAAGTTGCAAAACACTATAT+AGG | + | chr2_3:45986633-45986652 | Msa0294220:CDS | 30.0% | |
| !! | GAGTTAATTTGTGTAGTTTC+TGG | + | chr2_3:45987056-45987075 | Msa0294220:intron | 30.0% |
| !!! | TTTTTTCTTCAGACCATTCT+TGG | - | chr2_3:45987275-45987294 | None:intergenic | 30.0% |
| !! | ATCTCTAATTTCATCGGTTT+GGG | - | chr2_3:45987358-45987377 | None:intergenic | 30.0% |
| ATGATTGGATATTCTGATTC+AGG | + | chr2_3:45987630-45987649 | Msa0294220:CDS | 30.0% | |
| GTTAAATATGTTTGTAGTCC+TGG | - | chr2_3:45988210-45988229 | None:intergenic | 30.0% | |
| ATTTAGACAAGTTGTTCAGA+AGG | + | chr2_3:45988432-45988451 | Msa0294220:CDS | 30.0% | |
| TCAATTGTAACCCTAAAGAA+AGG | - | chr2_3:45988502-45988521 | None:intergenic | 30.0% | |
| AAAAGATCATTACCTGAAGT+AGG | - | chr2_3:45988654-45988673 | None:intergenic | 30.0% | |
| !!! | GTTTTGGAACAATTTTTAGC+GGG | + | chr2_3:45988700-45988719 | Msa0294220:intron | 30.0% |
| ACGTATTTGAACTTATCTAC+TGG | + | chr2_3:45988742-45988761 | Msa0294220:intron | 30.0% | |
| ATAAGCTGAAAATAGCTTAC+AGG | - | chr2_3:45988818-45988837 | None:intergenic | 30.0% | |
| AACATTAAGGGTTGTAATGT+AGG | - | chr2_3:45989132-45989151 | None:intergenic | 30.0% | |
| TGTCATAAGAATTTCACATC+AGG | + | chr2_3:45989489-45989508 | Msa0294220:three_prime_UTR | 30.0% | |
| !! | AATTTCACATCAGGTTTTGT+TGG | + | chr2_3:45989498-45989517 | Msa0294220:three_prime_UTR | 30.0% |
| AATTGCATAACTCATTTGTG+TGG | - | chr2_3:45989544-45989563 | None:intergenic | 30.0% | |
| GCAATTGATGTTATGTTTCA+AGG | + | chr2_3:45989558-45989577 | Msa0294220:three_prime_UTR | 30.0% | |
| GAATGGAAAAATGGATCAGA+AGG | - | chr2_3:45984056-45984075 | None:intergenic | 35.0% | |
| GATGACAAGGAATGGAAAAA+TGG | - | chr2_3:45984065-45984084 | None:intergenic | 35.0% | |
| AAGAAGATGATGACAAGGAA+TGG | - | chr2_3:45984073-45984092 | None:intergenic | 35.0% | |
| TTCGTATCTAACTAACTGTC+TGG | + | chr2_3:45984094-45984113 | Msa0294220:five_prime_UTR | 35.0% | |
| CACGTGTACATAAACATACT+AGG | - | chr2_3:45984298-45984317 | None:intergenic | 35.0% | |
| GGCAAACAAGATGGAAAAAA+TGG | + | chr2_3:45984541-45984560 | Msa0294220:CDS | 35.0% | |
| ! | TGAGTATGATGCTTTGTTGT+TGG | + | chr2_3:45984628-45984647 | Msa0294220:CDS | 35.0% |
| !! | ATGATGCTTTGTTGTTGGAT+CGG | + | chr2_3:45984633-45984652 | Msa0294220:CDS | 35.0% |
| TCTTCAAGATTTACATGGAG+AGG | + | chr2_3:45984667-45984686 | Msa0294220:CDS | 35.0% | |
| !! | GGTTGGTGAGAAAAAAAGAT+TGG | + | chr2_3:45984810-45984829 | Msa0294220:intron | 35.0% |
| AAACATGAACTATTAGGCCT+TGG | + | chr2_3:45985048-45985067 | Msa0294220:intron | 35.0% | |
| CAAGCATCTGAACAGAAAAT+TGG | - | chr2_3:45985098-45985117 | None:intergenic | 35.0% | |
| TCGAACTTATAGCTGCTATT+CGG | - | chr2_3:45985145-45985164 | None:intergenic | 35.0% | |
| GTGTTGTCAATTGTGAATGA+CGG | - | chr2_3:45985243-45985262 | None:intergenic | 35.0% | |
| TCATTCACAATTGACAACAC+TGG | + | chr2_3:45985243-45985262 | Msa0294220:intron | 35.0% | |
| CATTCACAATTGACAACACT+GGG | + | chr2_3:45985244-45985263 | Msa0294220:intron | 35.0% | |
| !!! | GACGGAATCTTTTTTCTTCA+CGG | + | chr2_3:45985290-45985309 | Msa0294220:intron | 35.0% |
| AGGCTAAAATACTGTTATGC+AGG | + | chr2_3:45985323-45985342 | Msa0294220:intron | 35.0% | |
| CAAGTTAAGCATGTGTGAAA+AGG | - | chr2_3:45985469-45985488 | None:intergenic | 35.0% | |
| ! | CTTTTCACACATGCTTAACT+TGG | + | chr2_3:45985467-45985486 | Msa0294220:CDS | 35.0% |
| ! | CTTTCTTCAACTTGTTCCTT+CGG | - | chr2_3:45985527-45985546 | None:intergenic | 35.0% |
| AATGCATCAAAAACTTCCTG+AGG | - | chr2_3:45985636-45985655 | None:intergenic | 35.0% | |
| TAAGAACAAGATCAACAGTC+TGG | - | chr2_3:45985665-45985684 | None:intergenic | 35.0% | |
| ! | TTTGTTCTTTTCACAGGGTA+AGG | + | chr2_3:45985829-45985848 | Msa0294220:intron | 35.0% |
| TCCTCTTGATTTCATCAGTA+CGG | - | chr2_3:45986069-45986088 | None:intergenic | 35.0% | |
| CTTCCATGAAACAATTTGGA+AGG | + | chr2_3:45986132-45986151 | Msa0294220:CDS | 35.0% | |
| ! | ATACGGCATTGAAGAACATA+GGG | + | chr2_3:45986182-45986201 | Msa0294220:CDS | 35.0% |
| ! | TTTTCCAAAACTCTGCATCA+TGG | - | chr2_3:45986772-45986791 | None:intergenic | 35.0% |
| CACTTGTAAGGCTTGATATA+AGG | + | chr2_3:45987184-45987203 | Msa0294220:CDS | 35.0% | |
| GGATCCAATTTCCAAATGTT+TGG | - | chr2_3:45987250-45987269 | None:intergenic | 35.0% | |
| AAATTGGATCCTACCAAGAA+TGG | + | chr2_3:45987259-45987278 | Msa0294220:CDS | 35.0% | |
| ATGGTCTGAAGAAAAAAGAC+AGG | + | chr2_3:45987278-45987297 | Msa0294220:CDS | 35.0% | |
| CTGAAGAAAAAAGACAGGAA+TGG | + | chr2_3:45987283-45987302 | Msa0294220:CDS | 35.0% | |
| !! | TCTCTAATTTCATCGGTTTG+GGG | - | chr2_3:45987357-45987376 | None:intergenic | 35.0% |
| ! | CATCTCTAATTTCATCGGTT+TGG | - | chr2_3:45987359-45987378 | None:intergenic | 35.0% |
| TCATCAAGCTTCTCAAACAA+CGG | - | chr2_3:45987528-45987547 | None:intergenic | 35.0% | |
| ATCAAAGTCGCACAGAAATT+TGG | + | chr2_3:45987711-45987730 | Msa0294220:CDS | 35.0% | |
| TTGAGACAAGATAGCAAGAT+GGG | - | chr2_3:45987796-45987815 | None:intergenic | 35.0% | |
| GAAGTTATTGAACAGTCGTT+CGG | + | chr2_3:45987861-45987880 | Msa0294220:CDS | 35.0% | |
| ATACCGTTCAATTGTGTTCA+AGG | + | chr2_3:45988019-45988038 | Msa0294220:CDS | 35.0% | |
| GTTCCTTGAACACAATTGAA+CGG | - | chr2_3:45988025-45988044 | None:intergenic | 35.0% | |
| ! | TTTTGTGATGTCTTACCAGA+CGG | - | chr2_3:45988067-45988086 | None:intergenic | 35.0% |
| !!! | CTAAAGTTTGTCATTTTGCC+AGG | + | chr2_3:45988189-45988208 | Msa0294220:intron | 35.0% |
| GTCAACTTTATGTGTCATGT+AGG | + | chr2_3:45988252-45988271 | Msa0294220:intron | 35.0% | |
| TTTCATCTTCCAGTATGGTT+GGG | + | chr2_3:45988397-45988416 | Msa0294220:CDS | 35.0% | |
| TGCAAGAGATGTACAATCAA+TGG | + | chr2_3:45988476-45988495 | Msa0294220:CDS | 35.0% | |
| ACAATCAATGGCCTTTCTTT+AGG | + | chr2_3:45988488-45988507 | Msa0294220:CDS | 35.0% | |
| CAATCAATGGCCTTTCTTTA+GGG | + | chr2_3:45988489-45988508 | Msa0294220:CDS | 35.0% | |
| AACTAAGAAACTCCTACTTC+AGG | + | chr2_3:45988639-45988658 | Msa0294220:CDS | 35.0% | |
| GATCTGATGGAAATAGCTTA+TGG | + | chr2_3:45988788-45988807 | Msa0294220:intron | 35.0% | |
| ! | TTGTAATCTTCTGTATCGGT+AGG | + | chr2_3:45989040-45989059 | Msa0294220:intron | 35.0% |
| GTAGGCTTGGAAAACATTAA+GGG | - | chr2_3:45989144-45989163 | None:intergenic | 35.0% | |
| TGTAGGCTTGGAAAACATTA+AGG | - | chr2_3:45989145-45989164 | None:intergenic | 35.0% | |
| AATGTTACAAGTTCATCAGC+TGG | - | chr2_3:45989248-45989267 | None:intergenic | 35.0% | |
| ACACTCATTCTTACCATGAA+GGG | + | chr2_3:45989305-45989324 | Msa0294220:CDS | 35.0% | |
| !! | GCAGAACACTGGTTAAATTT+TGG | + | chr2_3:45989343-45989362 | Msa0294220:exon | 35.0% |
| TGATCTCAAGTAGTGAAGTG+GGG | - | chr2_3:45984023-45984042 | None:intergenic | 40.0% | |
| GTGATCTCAAGTAGTGAAGT+GGG | - | chr2_3:45984024-45984043 | None:intergenic | 40.0% | |
| TGTGATCTCAAGTAGTGAAG+TGG | - | chr2_3:45984025-45984044 | None:intergenic | 40.0% | |
| CGAAGAAGAAGATGATGACA+AGG | - | chr2_3:45984078-45984097 | None:intergenic | 40.0% | |
| GAGAGAGTGAATTGCTACAA+TGG | + | chr2_3:45984520-45984539 | Msa0294220:exon | 40.0% | |
| TGCTACAATGGCAAACAAGA+TGG | + | chr2_3:45984532-45984551 | Msa0294220:exon | 40.0% | |
| TGATGCACAGCTTAGACAAT+TGG | + | chr2_3:45984571-45984590 | Msa0294220:CDS | 40.0% | |
| !! | TCATCTTCACTCACTTTTGC+AGG | - | chr2_3:45984599-45984618 | None:intergenic | 40.0% |
| TTTACATGGAGAGGATCTGA+AGG | + | chr2_3:45984676-45984695 | Msa0294220:CDS | 40.0% | |
| CACTAAATCTACAGTCACCA+AGG | - | chr2_3:45985068-45985087 | None:intergenic | 40.0% | |
| TGCTCTTTGACATGATGAGA+CGG | + | chr2_3:45985272-45985291 | Msa0294220:intron | 40.0% | |
| TTCTTCACGGTGTGATTGAA+AGG | + | chr2_3:45985303-45985322 | Msa0294220:intron | 40.0% | |
| ! | CCAAGCTCTTCAAGTTTCTT+AGG | - | chr2_3:45985396-45985415 | None:intergenic | 40.0% |
| CCTAAGAAACTTGAAGAGCT+TGG | + | chr2_3:45985393-45985412 | Msa0294220:CDS | 40.0% | |
| TTGATCACAAGTTTCGATGC+AGG | + | chr2_3:45985420-45985439 | Msa0294220:CDS | 40.0% | |
| AAGCATGTGTGAAAAGGACT+TGG | - | chr2_3:45985463-45985482 | None:intergenic | 40.0% | |
| ! | CGAAGGAACAAGTTGAAGAA+AGG | + | chr2_3:45985525-45985544 | Msa0294220:CDS | 40.0% |
| AACCACTGAATCTGACATTG+AGG | + | chr2_3:45985572-45985591 | Msa0294220:CDS | 40.0% | |
| TTCCTCAATGTCAGATTCAG+TGG | - | chr2_3:45985577-45985596 | None:intergenic | 40.0% | |
| TGACATGAAGAAATCTCCTC+AGG | + | chr2_3:45985617-45985636 | Msa0294220:CDS | 40.0% | |
| CGATCTTTGCTTCAAAAGCA+TGG | + | chr2_3:45985711-45985730 | Msa0294220:CDS | 40.0% | |
| ! | CTTTGCTTCAAAAGCATGGA+AGG | + | chr2_3:45985715-45985734 | Msa0294220:CDS | 40.0% |
| ! | TCCGTACTGATGAAATCAAG+AGG | + | chr2_3:45986065-45986084 | Msa0294220:CDS | 40.0% |
| AACTCCACAAGATGAGATGA+GGG | + | chr2_3:45986096-45986115 | Msa0294220:CDS | 40.0% | |
| CACCCTTCCAAATTGTTTCA+TGG | - | chr2_3:45986138-45986157 | None:intergenic | 40.0% | |
| CAACACGGCGAAGAAATTTA+GGG | - | chr2_3:45986162-45986181 | None:intergenic | 40.0% | |
| TCAACACGGCGAAGAAATTT+AGG | - | chr2_3:45986163-45986182 | None:intergenic | 40.0% | |
| ! | ATTTCTTCGCCGTGTTGATA+CGG | + | chr2_3:45986165-45986184 | Msa0294220:CDS | 40.0% |
| TCTTCAATGCCGTATCAACA+CGG | - | chr2_3:45986177-45986196 | None:intergenic | 40.0% | |
| ! | GATACGGCATTGAAGAACAT+AGG | + | chr2_3:45986181-45986200 | Msa0294220:CDS | 40.0% |
| !! | TGGATAAGAGGAGCATTGTA+GGG | - | chr2_3:45986223-45986242 | None:intergenic | 40.0% |
| !! | TTGGATAAGAGGAGCATTGT+AGG | - | chr2_3:45986224-45986243 | None:intergenic | 40.0% |
| CACCCATCCAAGAAGAAAAT+TGG | - | chr2_3:45986243-45986262 | None:intergenic | 40.0% | |
| ! | CAATTTTCTTCTTGGATGGG+TGG | + | chr2_3:45986241-45986260 | Msa0294220:CDS | 40.0% |
| ! | TCTTCCATGATGCAGAGTTT+TGG | + | chr2_3:45986765-45986784 | Msa0294220:intron | 40.0% |
| TTTCACAATAGCCATGAGCT+AGG | - | chr2_3:45986880-45986899 | None:intergenic | 40.0% | |
| CTCATCTACATTGGTGAATG+TGG | - | chr2_3:45986915-45986934 | None:intergenic | 40.0% | |
| CACATTCACCAATGTAGATG+AGG | + | chr2_3:45986913-45986932 | Msa0294220:CDS | 40.0% | |
| GAAGCCTTCTTGATTTCTTG+AGG | + | chr2_3:45987139-45987158 | Msa0294220:CDS | 40.0% | |
| CTTGCCTCAAGAAATCAAGA+AGG | - | chr2_3:45987146-45987165 | None:intergenic | 40.0% | |
| ! | TTGAGGCAAGTTTCCACTTT+TGG | + | chr2_3:45987156-45987175 | Msa0294220:CDS | 40.0% |
| TACAAGTGACAGTCCAAAAG+TGG | - | chr2_3:45987172-45987191 | None:intergenic | 40.0% | |
| !! | CTTTTGGACTGTCACTTGTA+AGG | + | chr2_3:45987172-45987191 | Msa0294220:CDS | 40.0% |
| GGATGCCATTACCAAACATT+TGG | + | chr2_3:45987236-45987255 | Msa0294220:CDS | 40.0% | |
| TTCTTCAGACCATTCTTGGT+AGG | - | chr2_3:45987271-45987290 | None:intergenic | 40.0% | |
| !!! | TGGCTTTTGTCTGAGTTGAT+TGG | + | chr2_3:45987303-45987322 | Msa0294220:CDS | 40.0% |
| !! | TGTCTGAGTTGATTGGCAAA+AGG | + | chr2_3:45987310-45987329 | Msa0294220:CDS | 40.0% |
| !!! | ATTGGCAAAAGGCCACTTTT+TGG | + | chr2_3:45987321-45987340 | Msa0294220:CDS | 40.0% |
| !! | TAATTTCATCGGTTTGGGGT+AGG | - | chr2_3:45987353-45987372 | None:intergenic | 40.0% |
| ATGGAAGTTCTGCTATGACA+CGG | - | chr2_3:45987395-45987414 | None:intergenic | 40.0% | |
| GAACTTCCATCTGACAACTT+TGG | + | chr2_3:45987405-45987424 | Msa0294220:CDS | 40.0% | |
| AGTTGCCATCGAAATGATGT+AGG | - | chr2_3:45987433-45987452 | None:intergenic | 40.0% | |
| TTCAACGTGAATGCAAAGTC+AGG | + | chr2_3:45987484-45987503 | Msa0294220:CDS | 40.0% | |
| AACAACGGAACGACTCTTAA+TGG | - | chr2_3:45987513-45987532 | None:intergenic | 40.0% | |
| CCATAGACTGGTACATTAAC+CGG | + | chr2_3:45987586-45987605 | Msa0294220:CDS | 40.0% | |
| GGGAAGCAAGAAGTTATGAT+TGG | + | chr2_3:45987615-45987634 | Msa0294220:CDS | 40.0% | |
| TCTGATTCAGGAAAAGATGC+TGG | + | chr2_3:45987642-45987661 | Msa0294220:CDS | 40.0% | |
| ATTCAGGAAAAGATGCTGGA+AGG | + | chr2_3:45987646-45987665 | Msa0294220:CDS | 40.0% | |
| ATTTCTGTGCGACTTTGATG+AGG | - | chr2_3:45987710-45987729 | None:intergenic | 40.0% | |
| GTTAAGCTAACCATGTTCCA+CGG | + | chr2_3:45987735-45987754 | Msa0294220:CDS | 40.0% | |
| GTTGAGACAAGATAGCAAGA+TGG | - | chr2_3:45987797-45987816 | None:intergenic | 40.0% | |
| CAACCACCAGAAACAATTCA+CGG | + | chr2_3:45987813-45987832 | Msa0294220:CDS | 40.0% | |
| AGAGATCCGTGAATTGTTTC+TGG | - | chr2_3:45987822-45987841 | None:intergenic | 40.0% | |
| !!! | ATTCTGGTTTTGGAGAGCTT+GGG | - | chr2_3:45987956-45987975 | None:intergenic | 40.0% |
| ! | TTTTGTTGAGTACTTCCGTC+TGG | + | chr2_3:45988049-45988068 | Msa0294220:CDS | 40.0% |
| GAGTATGGTAGGATGAACAT+TGG | + | chr2_3:45988289-45988308 | Msa0294220:CDS | 40.0% | |
| CAAGGTTTCATCTTCCAGTA+TGG | + | chr2_3:45988392-45988411 | Msa0294220:CDS | 40.0% | |
| GTTTCATCTTCCAGTATGGT+TGG | + | chr2_3:45988396-45988415 | Msa0294220:CDS | 40.0% | |
| TGTACATCTCTTGCAGCATA+TGG | - | chr2_3:45988471-45988490 | None:intergenic | 40.0% | |
| AGTTGAAATGGTGTTTGCCA+AGG | + | chr2_3:45988525-45988544 | Msa0294220:CDS | 40.0% | |
| GTTGAAATGGTGTTTGCCAA+GGG | + | chr2_3:45988526-45988545 | Msa0294220:CDS | 40.0% | |
| ! | GTATTGCAGCACTGAATGAT+AGG | + | chr2_3:45988557-45988576 | Msa0294220:CDS | 40.0% |
| TGATAGGCTCCTAGTTTCAA+AGG | + | chr2_3:45988573-45988592 | Msa0294220:CDS | 40.0% | |
| TCCTAGTTTCAAAGGATCTG+TGG | + | chr2_3:45988581-45988600 | Msa0294220:CDS | 40.0% | |
| !!! | GAACAATTTTTAGCGGGCAA+GGG | + | chr2_3:45988706-45988725 | Msa0294220:intron | 40.0% |
| ! | TAATCTTCTGTATCGGTAGG+TGG | + | chr2_3:45989043-45989062 | Msa0294220:intron | 40.0% |
| TGAGTCTTTGCTTCAAGTAG+GGG | - | chr2_3:45989097-45989116 | None:intergenic | 40.0% | |
| CTGAGTCTTTGCTTCAAGTA+GGG | - | chr2_3:45989098-45989117 | None:intergenic | 40.0% | |
| TCTGAGTCTTTGCTTCAAGT+AGG | - | chr2_3:45989099-45989118 | None:intergenic | 40.0% | |
| GGGTTGTAATGTAGGAATCA+CGG | - | chr2_3:45989124-45989143 | None:intergenic | 40.0% | |
| TCCAAGCCTACACATTGAAA+CGG | + | chr2_3:45989153-45989172 | Msa0294220:CDS | 40.0% | |
| GATCCGTGATCCAAACTATA+AGG | + | chr2_3:45989175-45989194 | Msa0294220:CDS | 40.0% | |
| CCACCTTATAGTTTGGATCA+CGG | - | chr2_3:45989181-45989200 | None:intergenic | 40.0% | |
| TGATCCAAACTATAAGGTGG+AGG | + | chr2_3:45989181-45989200 | Msa0294220:CDS | 40.0% | |
| AGCAGACTCTTTCGATATTG+GGG | - | chr2_3:45989213-45989232 | None:intergenic | 40.0% | |
| CAGCAGACTCTTTCGATATT+GGG | - | chr2_3:45989214-45989233 | None:intergenic | 40.0% | |
| TCAGCAGACTCTTTCGATAT+TGG | - | chr2_3:45989215-45989234 | None:intergenic | 40.0% | |
| AAGTGAATATGCTCCTGGTT+TGG | + | chr2_3:45989277-45989296 | Msa0294220:CDS | 40.0% | |
| CACACTCATTCTTACCATGA+AGG | + | chr2_3:45989304-45989323 | Msa0294220:CDS | 40.0% | |
| ATTTGTGTGGCAGCAAAGTA+AGG | - | chr2_3:45989531-45989550 | None:intergenic | 40.0% | |
| ATCTCAAGTAGTGAAGTGGG+GGG | - | chr2_3:45984021-45984040 | None:intergenic | 45.0% | |
| GATCTCAAGTAGTGAAGTGG+GGG | - | chr2_3:45984022-45984041 | None:intergenic | 45.0% | |
| TAACTGTCTGGCACACAACA+CGG | + | chr2_3:45984106-45984125 | Msa0294220:five_prime_UTR | 45.0% | |
| CTGAACCTCTTCAGCTAAGT+TGG | - | chr2_3:45985493-45985512 | None:intergenic | 45.0% | |
| ! | TCTTCAACTTGTTCCTTCGG+CGG | - | chr2_3:45985524-45985543 | None:intergenic | 45.0% |
| TACTGCTCATCCTACTCAGT+CGG | + | chr2_3:45985683-45985702 | Msa0294220:CDS | 45.0% | |
| CATCACTCCTGATGATAAGC+AGG | + | chr2_3:45985881-45985900 | Msa0294220:CDS | 45.0% | |
| TCAAGCTCCTGCTTATCATC+AGG | - | chr2_3:45985891-45985910 | None:intergenic | 45.0% | |
| AGCTTGATGAAGCTCTCCAA+AGG | + | chr2_3:45985904-45985923 | Msa0294220:CDS | 45.0% | |
| GCTTGATGAAGCTCTCCAAA+GGG | + | chr2_3:45985905-45985924 | Msa0294220:CDS | 45.0% | |
| ATCTCATCTTGTGGAGTTGG+TGG | - | chr2_3:45986094-45986113 | None:intergenic | 45.0% | |
| CTCATCTCATCTTGTGGAGT+TGG | - | chr2_3:45986097-45986116 | None:intergenic | 45.0% | |
| CAACTCCACAAGATGAGATG+AGG | + | chr2_3:45986095-45986114 | Msa0294220:CDS | 45.0% | |
| AGTGACTCCTGAAGTGACAA+GGG | + | chr2_3:45986376-45986395 | Msa0294220:CDS | 45.0% | |
| ! | CAAACATCCCTTGTCACTTC+AGG | - | chr2_3:45986386-45986405 | None:intergenic | 45.0% |
| TCTCGTTATCTCCTAGCTCA+TGG | + | chr2_3:45986866-45986885 | Msa0294220:CDS | 45.0% | |
| TTGGTGAATGTGGCTTCTTC+AGG | - | chr2_3:45986905-45986924 | None:intergenic | 45.0% | |
| GATCTGTAGCAGAGTTCAAG+AGG | - | chr2_3:45987084-45987103 | None:intergenic | 45.0% | |
| TACAGATCACTCTGTGCTTG+TGG | + | chr2_3:45987096-45987115 | Msa0294220:CDS | 45.0% | |
| TAGGCTCCAAAGTTGTCAGA+TGG | - | chr2_3:45987414-45987433 | None:intergenic | 45.0% | |
| TGGAGCCTACATCATTTCGA+TGG | + | chr2_3:45987425-45987444 | Msa0294220:CDS | 45.0% | |
| CCGGTTAATGTACCAGTCTA+TGG | - | chr2_3:45987589-45987608 | None:intergenic | 45.0% | |
| TGGTACATTAACCGGATCGA+TGG | + | chr2_3:45987594-45987613 | Msa0294220:CDS | 45.0% | |
| GGTACATTAACCGGATCGAT+GGG | + | chr2_3:45987595-45987614 | Msa0294220:CDS | 45.0% | |
| TGCAGCATGGCAGCTATATA+AGG | + | chr2_3:45987674-45987693 | Msa0294220:CDS | 45.0% | |
| ATGGCAGCTATATAAGGCTC+AGG | + | chr2_3:45987680-45987699 | Msa0294220:CDS | 45.0% | |
| GACAAGATAGCAAGATGGGT+AGG | - | chr2_3:45987792-45987811 | None:intergenic | 45.0% | |
| !! | GATCCGTGAATTGTTTCTGG+TGG | - | chr2_3:45987819-45987838 | None:intergenic | 45.0% |
| TCTCTTCGTGTGACAGTTCA+AGG | + | chr2_3:45987837-45987856 | Msa0294220:CDS | 45.0% | |
| ! | TATTGAACAGTCGTTCGGTG+AGG | + | chr2_3:45987866-45987885 | Msa0294220:CDS | 45.0% |
| GTGAGGAACACTTGTGCTTT+AGG | + | chr2_3:45987883-45987902 | Msa0294220:CDS | 45.0% | |
| !! | ACTGCTGCTACTCTAGAACA+TGG | + | chr2_3:45987921-45987940 | Msa0294220:CDS | 45.0% |
| !!! | TTCTGGTTTTGGAGAGCTTG+GGG | - | chr2_3:45987955-45987974 | None:intergenic | 45.0% |
| !!! | CATTCTGGTTTTGGAGAGCT+TGG | - | chr2_3:45987957-45987976 | None:intergenic | 45.0% |
| CAAGCTCTCCAAAACCAGAA+TGG | + | chr2_3:45987955-45987974 | Msa0294220:CDS | 45.0% | |
| !! | CGGAAGTACTCAACAAAACG+TGG | - | chr2_3:45988047-45988066 | None:intergenic | 45.0% |
| ATCCTACCATACTCCATCTC+TGG | - | chr2_3:45988283-45988302 | None:intergenic | 45.0% | |
| GATGAACATTGGAAGTCGAC+CGG | + | chr2_3:45988300-45988319 | Msa0294220:CDS | 45.0% | |
| AGTGTTTCAATGCCTCCACT+AGG | - | chr2_3:45988337-45988356 | None:intergenic | 45.0% | |
| ATGAAACCTTGTCTGTGTCC+AGG | - | chr2_3:45988383-45988402 | None:intergenic | 45.0% | |
| CATTCAGTGCTGCAATACCA+GGG | - | chr2_3:45988555-45988574 | None:intergenic | 45.0% | |
| TCATTCAGTGCTGCAATACC+AGG | - | chr2_3:45988556-45988575 | None:intergenic | 45.0% | |
| !! | GCCACAGATCCTTTGAAACT+AGG | - | chr2_3:45988585-45988604 | None:intergenic | 45.0% |
| TCAAAGGATCTGTGGCCATT+TGG | + | chr2_3:45988589-45988608 | Msa0294220:CDS | 45.0% | |
| CAAAGGATCTGTGGCCATTT+GGG | + | chr2_3:45988590-45988609 | Msa0294220:CDS | 45.0% | |
| AAAGGATCTGTGGCCATTTG+GGG | + | chr2_3:45988591-45988610 | Msa0294220:CDS | 45.0% | |
| CTTCTCAACTGTTCCCCAAA+TGG | - | chr2_3:45988607-45988626 | None:intergenic | 45.0% | |
| !!! | GGAACAATTTTTAGCGGGCA+AGG | + | chr2_3:45988705-45988724 | Msa0294220:intron | 45.0% |
| GCACACAAGGAAGTTCTTGA+AGG | + | chr2_3:45989068-45989087 | Msa0294220:CDS | 45.0% | |
| TCCGTTTCAATGTGTAGGCT+TGG | - | chr2_3:45989157-45989176 | None:intergenic | 45.0% | |
| ACGGATCCGTTTCAATGTGT+AGG | - | chr2_3:45989162-45989181 | None:intergenic | 45.0% | |
| CCGTGATCCAAACTATAAGG+TGG | + | chr2_3:45989178-45989197 | Msa0294220:CDS | 45.0% | |
| CAGACTCTTTCGATATTGGG+GGG | - | chr2_3:45989211-45989230 | None:intergenic | 45.0% | |
| GCAGACTCTTTCGATATTGG+GGG | - | chr2_3:45989212-45989231 | None:intergenic | 45.0% | |
| ! | CCAGGAGCATATTCACTTGT+TGG | - | chr2_3:45989275-45989294 | None:intergenic | 45.0% |
| CCAACAAGTGAATATGCTCC+TGG | + | chr2_3:45989272-45989291 | Msa0294220:CDS | 45.0% | |
| ATGAGTGTGTCTTCCAAACC+AGG | - | chr2_3:45989293-45989312 | None:intergenic | 45.0% | |
| !!! | TTTTAAAATTAAAATATTGA+AGG | - | chr2_3:45985770-45985789 | None:intergenic | 5.0% |
| !! | GTTAAAATTAAAATTTATAT+AGG | + | chr2_3:45988164-45988183 | Msa0294220:intron | 5.0% |
| CTTGGCCAACTTAGCTGAAG+AGG | + | chr2_3:45985485-45985504 | Msa0294220:CDS | 50.0% | |
| TGATGAAGCTCTCCAAAGGG+AGG | + | chr2_3:45985908-45985927 | Msa0294220:CDS | 50.0% | |
| CACAAGATGAGATGAGGGCT+GGG | + | chr2_3:45986101-45986120 | Msa0294220:CDS | 50.0% | |
| GTCACTTCAGGAGTCACTCT+TGG | - | chr2_3:45986374-45986393 | None:intergenic | 50.0% | |
| GAGTGACTCCTGAAGTGACA+AGG | + | chr2_3:45986375-45986394 | Msa0294220:CDS | 50.0% | |
| TTCGCGCAGAAGAACTTCAC+AGG | + | chr2_3:45986595-45986614 | Msa0294220:CDS | 50.0% | |
| ACACGGTACGGTTCGTTCAA+AGG | - | chr2_3:45986800-45986819 | None:intergenic | 50.0% | |
| GAACCGTACCGTGTTGTACT+CGG | + | chr2_3:45986806-45986825 | Msa0294220:CDS | 50.0% | |
| AACCGTACCGTGTTGTACTC+GGG | + | chr2_3:45986807-45986826 | Msa0294220:CDS | 50.0% | |
| GGTGATCGTGCAATTGCTGA+TGG | + | chr2_3:45987117-45987136 | Msa0294220:CDS | 50.0% | |
| TGATCGTCACACTGACGTGA+TGG | + | chr2_3:45987215-45987234 | Msa0294220:CDS | 50.0% | |
| GGTAGGTCAGGTCCAAAAAG+TGG | - | chr2_3:45987336-45987355 | None:intergenic | 50.0% | |
| TCAACTGCCAGCACATCAGA+CGG | - | chr2_3:45987459-45987478 | None:intergenic | 50.0% | |
| CTCGGTTGTTCTCCATAGAC+TGG | + | chr2_3:45987574-45987593 | Msa0294220:CDS | 50.0% | |
| CTTCTTGCTTCCCATCGATC+CGG | - | chr2_3:45987608-45987627 | None:intergenic | 50.0% | |
| ! | CTGGAAGGTTTTCTGCAGCA+TGG | + | chr2_3:45987661-45987680 | Msa0294220:CDS | 50.0% |
| GCAGCTATATAAGGCTCAGG+AGG | + | chr2_3:45987683-45987702 | Msa0294220:CDS | 50.0% | |
| !!! | TCTGGTTTTGGAGAGCTTGG+GGG | - | chr2_3:45987954-45987973 | None:intergenic | 50.0% |
| GACAGCCATCTGATCCATCA+AGG | - | chr2_3:45987985-45988004 | None:intergenic | 50.0% | |
| GATGGCTGTCATTGCTACTG+AGG | + | chr2_3:45987995-45988014 | Msa0294220:CDS | 50.0% | |
| CATGTAGGCTACACCAGAGA+TGG | + | chr2_3:45988267-45988286 | Msa0294220:intron | 50.0% | |
| GCTACACCAGAGATGGAGTA+TGG | + | chr2_3:45988274-45988293 | Msa0294220:CDS | 50.0% | |
| CACCAGAGATGGAGTATGGT+AGG | + | chr2_3:45988278-45988297 | Msa0294220:CDS | 50.0% | |
| AAACACTGCGTGCGATTCCA+TGG | + | chr2_3:45988350-45988369 | Msa0294220:CDS | 50.0% | |
| CGATTCCATGGATCTTTGCC+TGG | + | chr2_3:45988362-45988381 | Msa0294220:CDS | 50.0% | |
| TGTGTCCAGGCAAAGATCCA+TGG | - | chr2_3:45988370-45988389 | None:intergenic | 50.0% | |
| TCTTTGCCTGGACACAGACA+AGG | + | chr2_3:45988374-45988393 | Msa0294220:CDS | 50.0% | |
| CTTCCAGTATGGTTGGGCTT+TGG | + | chr2_3:45988403-45988422 | Msa0294220:CDS | 50.0% | |
| ! | TTAGCGGGCAAGGGCATATT+TGG | + | chr2_3:45988715-45988734 | Msa0294220:intron | 50.0% |
| CGCACCTCCACCTTATAGTT+TGG | - | chr2_3:45989188-45989207 | None:intergenic | 50.0% | |
| !! | ACCATGAAGGGTATTGCTGC+TGG | + | chr2_3:45989317-45989336 | Msa0294220:CDS | 50.0% |
| GATCGACGAACCGACTGAGT+AGG | - | chr2_3:45985696-45985715 | None:intergenic | 55.0% | |
| CTTCGATGCTCACCTCCCTT+TGG | - | chr2_3:45985923-45985942 | None:intergenic | 55.0% | |
| CCAGCCCTCATCTCATCTTG+TGG | - | chr2_3:45986103-45986122 | None:intergenic | 55.0% | |
| CCACAAGATGAGATGAGGGC+TGG | + | chr2_3:45986100-45986119 | Msa0294220:CDS | 55.0% | |
| TGGATGGGTGGTGATCGTGA+CGG | + | chr2_3:45986253-45986272 | Msa0294220:CDS | 55.0% | |
| ACCGTACCGTGTTGTACTCG+GGG | + | chr2_3:45986808-45986827 | Msa0294220:CDS | 55.0% | |
| TCCCCGAGTACAACACGGTA+CGG | - | chr2_3:45986812-45986831 | None:intergenic | 55.0% | |
| TCACCTCCCCGAGTACAACA+CGG | - | chr2_3:45986817-45986836 | None:intergenic | 55.0% | |
| TGTTGTACTCGGGGAGGTGA+GGG | + | chr2_3:45986817-45986836 | Msa0294220:CDS | 55.0% | |
| !! | TCATCGGTTTGGGGTAGGTC+AGG | - | chr2_3:45987348-45987367 | None:intergenic | 55.0% |
| AACTGCACCGTCTGATGTGC+TGG | + | chr2_3:45987449-45987468 | Msa0294220:CDS | 55.0% | |
| TGAGTCTGCTCCTGCTGCAT+TGG | + | chr2_3:45987551-45987570 | Msa0294220:CDS | 55.0% | |
| AACAACCGAGCCAATGCAGC+AGG | - | chr2_3:45987564-45987583 | None:intergenic | 55.0% | |
| CTAACCATGTTCCACGGTCG+CGG | + | chr2_3:45987741-45987760 | Msa0294220:CDS | 55.0% | |
| GGTGGAACTGTTGGAAGAGG+AGG | + | chr2_3:45987762-45987781 | Msa0294220:CDS | 55.0% | |
| GGAACTGTTGGAAGAGGAGG+TGG | + | chr2_3:45987765-45987784 | Msa0294220:CDS | 55.0% | |
| !!! | AAGGCGCGCCATTCTGGTTT+TGG | - | chr2_3:45987966-45987985 | None:intergenic | 55.0% |
| GAAGTCGACCGGCAAAGAGA+AGG | + | chr2_3:45988311-45988330 | Msa0294220:CDS | 55.0% | |
| CCACTAGGCCTTCTCTTTGC+CGG | - | chr2_3:45988322-45988341 | None:intergenic | 55.0% | |
| GCAAAGAGAAGGCCTAGTGG+AGG | + | chr2_3:45988322-45988341 | Msa0294220:CDS | 55.0% | |
| GCTCCAAAGCCCAACCATAC+TGG | - | chr2_3:45988409-45988428 | None:intergenic | 55.0% | |
| TGCAATACCAGGGTCTCCCT+TGG | - | chr2_3:45988545-45988564 | None:intergenic | 55.0% | |
| GCCAGCAGCAATACCCTTCA+TGG | - | chr2_3:45989321-45989340 | None:intergenic | 55.0% | |
| TTCAGATTGCGCACCGCCGA+AGG | + | chr2_3:45985508-45985527 | Msa0294220:CDS | 60.0% | |
| GTACCGTGTTGTACTCGGGG+AGG | + | chr2_3:45986811-45986830 | Msa0294220:CDS | 60.0% | |
| GTGTTGTACTCGGGGAGGTG+AGG | + | chr2_3:45986816-45986835 | Msa0294220:CDS | 60.0% | |
| !! | CTGCTCCTGCTGCATTGGCT+CGG | + | chr2_3:45987556-45987575 | Msa0294220:CDS | 60.0% |
| CGCGGTGGAACTGTTGGAAG+AGG | + | chr2_3:45987759-45987778 | Msa0294220:CDS | 60.0% | |
| ACCAGAATGGCGCGCCTTGA+TGG | + | chr2_3:45987968-45987987 | Msa0294220:CDS | 60.0% | |
| TCCATCAAGGCGCGCCATTC+TGG | - | chr2_3:45987972-45987991 | None:intergenic | 60.0% | |
| ! | GCGCGCCTTGATGGATCAGA+TGG | + | chr2_3:45987977-45987996 | Msa0294220:CDS | 60.0% |
| CCGGCAAAGAGAAGGCCTAG+TGG | + | chr2_3:45988319-45988338 | Msa0294220:CDS | 60.0% | |
| GTGTTTGCCAAGGGAGACCC+TGG | + | chr2_3:45988535-45988554 | Msa0294220:CDS | 60.0% | |
| TCGGTAGGTGGCTGCACACA+AGG | + | chr2_3:45989055-45989074 | Msa0294220:intron | 60.0% | |
| GCTGCTGGCATGCAGAACAC+TGG | + | chr2_3:45989332-45989351 | Msa0294220:CDS | 60.0% | |
| ACCATGTTCCACGGTCGCGG+TGG | + | chr2_3:45987744-45987763 | Msa0294220:CDS | 65.0% | |
| TCCACCGCGACCGTGGAACA+TGG | - | chr2_3:45987748-45987767 | None:intergenic | 65.0% | |
| CAACAGTTCCACCGCGACCG+TGG | - | chr2_3:45987755-45987774 | None:intergenic | 65.0% | |
| CACGGTCGCGGTGGAACTGT+TGG | + | chr2_3:45987753-45987772 | Msa0294220:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 45983903 | 45989584 | 45983903 | ID=Msa0294220;Name=Msa0294220 |
| chr2_3 | mRNA | 45983903 | 45989584 | 45983903 | ID=Msa0294220-mRNA-1;Parent=Msa0294220;Name=Msa0294220-mRNA-1;_AED=0.06;_eAED=0.06;_QI=246|1|1|1|0.9|0.81|11|226|966 |
| chr2_3 | exon | 45983903 | 45984127 | 45983903 | ID=Msa0294220-mRNA-1:exon:14360;Parent=Msa0294220-mRNA-1 |
| chr2_3 | exon | 45984518 | 45984703 | 45984518 | ID=Msa0294220-mRNA-1:exon:14361;Parent=Msa0294220-mRNA-1 |
| chr2_3 | exon | 45985345 | 45985736 | 45985345 | ID=Msa0294220-mRNA-1:exon:14362;Parent=Msa0294220-mRNA-1 |
| chr2_3 | exon | 45985845 | 45985929 | 45985845 | ID=Msa0294220-mRNA-1:exon:14363;Parent=Msa0294220-mRNA-1 |
| chr2_3 | exon | 45986052 | 45986274 | 45986052 | ID=Msa0294220-mRNA-1:exon:14364;Parent=Msa0294220-mRNA-1 |
| chr2_3 | exon | 45986366 | 45986469 | 45986366 | ID=Msa0294220-mRNA-1:exon:14365;Parent=Msa0294220-mRNA-1 |
| chr2_3 | exon | 45986561 | 45986654 | 45986561 | ID=Msa0294220-mRNA-1:exon:14366;Parent=Msa0294220-mRNA-1 |
| chr2_3 | exon | 45986780 | 45986934 | 45986780 | ID=Msa0294220-mRNA-1:exon:14367;Parent=Msa0294220-mRNA-1 |
| chr2_3 | exon | 45987072 | 45988070 | 45987072 | ID=Msa0294220-mRNA-1:exon:14368;Parent=Msa0294220-mRNA-1 |
| chr2_3 | exon | 45988274 | 45988660 | 45988274 | ID=Msa0294220-mRNA-1:exon:14369;Parent=Msa0294220-mRNA-1 |
| chr2_3 | exon | 45989062 | 45989584 | 45989062 | ID=Msa0294220-mRNA-1:exon:14370;Parent=Msa0294220-mRNA-1 |
| chr2_3 | five_prime_UTR | 45983903 | 45984127 | 45983903 | ID=Msa0294220-mRNA-1:five_prime_utr;Parent=Msa0294220-mRNA-1 |
| chr2_3 | five_prime_UTR | 45984518 | 45984538 | 45984518 | ID=Msa0294220-mRNA-1:five_prime_utr;Parent=Msa0294220-mRNA-1 |
| chr2_3 | CDS | 45984539 | 45984703 | 45984539 | ID=Msa0294220-mRNA-1:cds;Parent=Msa0294220-mRNA-1 |
| chr2_3 | CDS | 45985345 | 45985736 | 45985345 | ID=Msa0294220-mRNA-1:cds;Parent=Msa0294220-mRNA-1 |
| chr2_3 | CDS | 45985845 | 45985929 | 45985845 | ID=Msa0294220-mRNA-1:cds;Parent=Msa0294220-mRNA-1 |
| chr2_3 | CDS | 45986052 | 45986274 | 45986052 | ID=Msa0294220-mRNA-1:cds;Parent=Msa0294220-mRNA-1 |
| chr2_3 | CDS | 45986366 | 45986469 | 45986366 | ID=Msa0294220-mRNA-1:cds;Parent=Msa0294220-mRNA-1 |
| chr2_3 | CDS | 45986561 | 45986654 | 45986561 | ID=Msa0294220-mRNA-1:cds;Parent=Msa0294220-mRNA-1 |
| chr2_3 | CDS | 45986780 | 45986934 | 45986780 | ID=Msa0294220-mRNA-1:cds;Parent=Msa0294220-mRNA-1 |
| chr2_3 | CDS | 45987072 | 45988070 | 45987072 | ID=Msa0294220-mRNA-1:cds;Parent=Msa0294220-mRNA-1 |
| chr2_3 | CDS | 45988274 | 45988660 | 45988274 | ID=Msa0294220-mRNA-1:cds;Parent=Msa0294220-mRNA-1 |
| chr2_3 | CDS | 45989062 | 45989358 | 45989062 | ID=Msa0294220-mRNA-1:cds;Parent=Msa0294220-mRNA-1 |
| chr2_3 | three_prime_UTR | 45989359 | 45989584 | 45989359 | ID=Msa0294220-mRNA-1:three_prime_utr;Parent=Msa0294220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
