AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0677840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0677840 MtrunA17_Chr4g0022631 97.770 269 5 1 1 268 1 269 0.0 530
Msa0677840 MtrunA17_Chr4g0022631 97.143 210 3 1 262 468 81 290 2.08e-144 415
Msa0677840 MtrunA17_Chr2g0323531 76.119 268 62 2 1 268 1 266 2.25e-145 417
Msa0677840 MtrunA17_Chr2g0323531 79.426 209 40 1 262 467 78 286 1.42e-116 343
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0677840 AT2G20890.1 67.766 273 69 5 2 268 3 262 2.62e-124 364
Msa0677840 AT2G20890.1 69.200 250 66 4 230 468 34 283 5.61e-118 348

Find 139 sgRNAs with CRISPR-Local

Find 577 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATGGAACCAACAATTT+TGG 0.156594 4_4:-32409512 Msa0677840:CDS
TGCAATGGAACCAACAATTT+TGG 0.156594 4_4:-32414391 Msa0677840:CDS
GAATAGAATGAGATTTATTT+AGG 0.169230 4_4:+32417681 None:intergenic
AGAAGTTGAGGGGACTTTAA+AGG 0.233722 4_4:-32409623 Msa0677840:CDS
AGAAGTTGAGGGGACTTTAA+AGG 0.233722 4_4:-32414502 Msa0677840:CDS
GAAAATCCAATTCATTATTC+AGG 0.258200 4_4:+32407847 None:intergenic
ATGGGGCACTTTCATGATAT+TGG 0.271282 4_4:-32407972 Msa0677840:three_prime_UTR
AATAGAATGAGATTTATTTA+GGG 0.283126 4_4:+32417682 None:intergenic
TTCCAATTCGGGTTCCAAAT+TGG 0.290486 4_4:-32417458 Msa0677840:CDS
CTTTCTTCCACTCGTTTCAT+TGG 0.317793 4_4:-32417544 Msa0677840:CDS
GGAACACCGAACAACCAATT+TGG 0.320518 4_4:+32417444 None:intergenic
CGGTGTTCCTCTTCTGTGTC+AGG 0.335981 4_4:-32417430 Msa0677840:intron
AACCAATTTGGAACCCGAAT+TGG 0.341244 4_4:+32417456 None:intergenic
TGAGGCCATTTCAAAATGAT+TGG 0.346612 4_4:-32408083 Msa0677840:exon
CTAACTCAAGAAGACGAAAA+AGG 0.351619 4_4:+32409539 None:intergenic
TGCCGGAAAATTTCTGATTC+CGG 0.352129 4_4:-32417656 Msa0677840:five_prime_UTR
TATGATTCTGTATTTGCTCT+TGG 0.353941 4_4:-32415418 Msa0677840:CDS
CTCTAGATGAAAACTCAATC+AGG 0.355791 4_4:+32409650 None:intergenic
CTCTAGATGAAAACTCAATC+AGG 0.355791 4_4:+32414529 None:intergenic
GCAGAAAGAGCGGGTGGAAA+TGG 0.361398 4_4:-32409595 Msa0677840:CDS
GCAGAAAGAGCGGGTGGAAA+TGG 0.361398 4_4:-32414474 Msa0677840:CDS
CTAACTCAAGAAGACGAAAA+AGG 0.366194 4_4:+32414418 None:intergenic
CGGGTTCCAAATTGGTTGTT+CGG 0.373368 4_4:-32417450 Msa0677840:CDS
ACACTCGTTCTAACCTGTAT+TGG 0.374794 4_4:+32410413 None:intergenic
ACACTCGTTCTAACCTGTAT+TGG 0.374794 4_4:+32415293 None:intergenic
TGTATCTCATCAAATGTTGC+TGG 0.375097 4_4:+32410575 None:intergenic
TGTATCTCATCAAATGTTGC+TGG 0.375097 4_4:+32415455 None:intergenic
TATGATCCTGTATTTGCTCT+TGG 0.383099 4_4:-32410538 Msa0677840:CDS
CGCGTACCTGAATAATGAAT+TGG 0.389484 4_4:-32407853 Msa0677840:three_prime_UTR
GTCAATTCAACAGCTTTGTT+CGG 0.391152 4_4:-32408766 Msa0677840:intron
AGCGGGTTGTATGGCGTAAC+CGG 0.392970 4_4:+32407819 None:intergenic
CAGAAAGAGCGGGTGGAAAT+GGG 0.407573 4_4:-32409594 Msa0677840:CDS
CAGAAAGAGCGGGTGGAAAT+GGG 0.407573 4_4:-32414473 Msa0677840:CDS
GTCAATTCAACAGCTTTGTT+CGG 0.409753 4_4:-32413815 Msa0677840:intron
TGGAGTTCGAACTTCCAATT+CGG 0.410297 4_4:-32417470 Msa0677840:CDS
GGAGTTCGAACTTCCAATTC+GGG 0.410940 4_4:-32417469 Msa0677840:CDS
CACTCGTTCTAACCTGTATT+GGG 0.413367 4_4:+32410414 None:intergenic
CACTCGTTCTAACCTGTATT+GGG 0.413367 4_4:+32415294 None:intergenic
AAATTGAATATGACACGAAA+TGG 0.414795 4_4:-32417867 Msa0677840:five_prime_UTR
TCGCAATCTGCTTTCTAAGT+TGG 0.429863 4_4:-32408697 Msa0677840:CDS
TCGCAATCTGCTTTCTAAGT+TGG 0.429863 4_4:-32413746 Msa0677840:CDS
AGCATATCTTTGCGCTATGT+TGG 0.431929 4_4:-32417490 Msa0677840:CDS
TGCACAGAAGTTAGAAGAAT+GGG 0.435557 4_4:-32409695 Msa0677840:CDS
GAAGAAGAAAATAGAAGAAA+GGG 0.446296 4_4:-32408125 Msa0677840:CDS
ACAACCCGCTGTCGAGGATC+AGG 0.447116 4_4:-32407806 Msa0677840:three_prime_UTR
AGAAGAAGAAAATAGAAGAA+AGG 0.447419 4_4:-32408126 Msa0677840:CDS
ATCCTCGACAGCGGGTTGTA+TGG 0.451366 4_4:+32407810 None:intergenic
TGGGAAACTGATATCAGAAT+GGG 0.452549 4_4:-32407990 Msa0677840:three_prime_UTR
TATCTATAACTCCGTGCTAC+AGG 0.455869 4_4:-32415488 Msa0677840:CDS
TATCTACAACTCTGTGCTAC+AGG 0.458194 4_4:-32410608 Msa0677840:CDS
GGAATTTAGACGGTGGTGGC+CGG 0.462622 4_4:+32417637 None:intergenic
AGCATACATTAACGCATTGA+AGG 0.462951 4_4:-32410446 Msa0677840:CDS
AGCATACATTAACGCATTGA+AGG 0.462951 4_4:-32415326 Msa0677840:CDS
GAGGCCATTTCAAAATGATT+GGG 0.464446 4_4:-32408082 Msa0677840:exon
AGGAAGATCCAGCCCAATAC+AGG 0.469089 4_4:-32410426 Msa0677840:intron
AGGAAGATCCAGCCCAATAC+AGG 0.469089 4_4:-32415306 Msa0677840:intron
GTTCCGATTCAGATGCAGTT+CGG 0.478573 4_4:-32417522 Msa0677840:CDS
TTAGGAAAGTGAGGTTTATG+TGG 0.481073 4_4:+32417813 None:intergenic
TGAGGTTTATGTGGATTACA+TGG 0.483888 4_4:+32417822 None:intergenic
AGAAAGGGCTGAACCACAAA+AGG 0.489128 4_4:-32408110 Msa0677840:CDS
AAACCGAACTGCATCTGAAT+CGG 0.490474 4_4:+32417519 None:intergenic
CGTTCTAACCTGTATTGGGC+TGG 0.491069 4_4:+32410418 None:intergenic
CGTTCTAACCTGTATTGGGC+TGG 0.491069 4_4:+32415298 None:intergenic
TGCTAAAGGAATACATCGAC+AGG 0.498491 4_4:-32413708 Msa0677840:intron
TGTGTATGAGTGTTGTCATT+AGG 0.498800 4_4:+32417795 None:intergenic
TGCACAGAAGTTAGAAGAGT+GGG 0.505507 4_4:-32414574 Msa0677840:CDS
AACTTTGTCTCAGAAACAGT+TGG 0.506286 4_4:+32415547 None:intergenic
CTGGGAAACTGATATCAGAA+TGG 0.511851 4_4:-32407991 Msa0677840:three_prime_UTR
CACAGCTTCTCAACGTGCAA+AGG 0.514565 4_4:-32407706 Msa0677840:three_prime_UTR
TGCTCAAGGAATACATTGAC+AGG 0.514662 4_4:-32408659 Msa0677840:intron
ATCTAGAGAAGGAGAAGTTG+AGG 0.517674 4_4:-32409635 Msa0677840:CDS
ATCTAGAGAAGGAGAAGTTG+AGG 0.517674 4_4:-32414514 Msa0677840:CDS
GAAGAAGTTACGGCGGCCAT+CGG 0.519226 4_4:+32417616 None:intergenic
TCAATGCGTTAATGTATGCT+TGG 0.520925 4_4:+32410449 None:intergenic
TCAATGCGTTAATGTATGCT+TGG 0.520925 4_4:+32415329 None:intergenic
TATAGTCGTTTCTTTGCAGT+CGG 0.521137 4_4:-32414441 Msa0677840:CDS
ATGCACAGAAGTTAGAAGAA+TGG 0.522241 4_4:-32409696 Msa0677840:CDS
AATCTCATTCTATTCTATGC+CGG 0.522556 4_4:-32417673 Msa0677840:five_prime_UTR
ACAGCTTCTCAACGTGCAAA+GGG 0.528000 4_4:-32407705 Msa0677840:three_prime_UTR
CGCCATACAACCCGCTGTCG+AGG 0.547069 4_4:-32407812 Msa0677840:three_prime_UTR
AGTTTCCCAGAACGAACAAA+AGG 0.547560 4_4:+32408004 None:intergenic
ACAAAGCCAAGAGCAAATAC+AGG 0.548987 4_4:+32410532 None:intergenic
TCTAGAGAAGGAGAAGTTGA+GGG 0.549571 4_4:-32409634 Msa0677840:CDS
TCTAGAGAAGGAGAAGTTGA+GGG 0.549571 4_4:-32414513 Msa0677840:CDS
TGAACCACAAAAGGCTAATG+AGG 0.552905 4_4:-32408101 Msa0677840:CDS
ACAAGCTAAAGAGCTGCTAA+AGG 0.557940 4_4:-32413722 Msa0677840:CDS
AAGGATATTGCAGAAAGAGC+GGG 0.557982 4_4:-32409604 Msa0677840:CDS
AAGGATATTGCAGAAAGAGC+GGG 0.557982 4_4:-32414483 Msa0677840:CDS
CACTCACTCAATCTTCTCAA+AGG 0.560956 4_4:-32417579 Msa0677840:CDS
AGAACCTGATCCTCGACAGC+GGG 0.562126 4_4:+32407802 None:intergenic
TTTCAAACCTGACACAGAAG+AGG 0.562747 4_4:+32417423 None:intergenic
CACTGTATATGACCAACTCA+TGG 0.564562 4_4:-32410509 Msa0677840:CDS
CACTGTATATGACCAACTCA+TGG 0.564562 4_4:-32415389 Msa0677840:CDS
TAGGATACCCTTCCATGAGT+TGG 0.569068 4_4:+32410497 None:intergenic
TAGGATACCCTTCCATGAGT+TGG 0.569068 4_4:+32415377 None:intergenic
TATAGTCGTTTCTTTGCAGT+AGG 0.573306 4_4:-32409562 Msa0677840:CDS
GTATATGACCAACTCATGGA+AGG 0.575651 4_4:-32410505 Msa0677840:CDS
GTATATGACCAACTCATGGA+AGG 0.575651 4_4:-32415385 Msa0677840:CDS
GACAATGAGCTCCTGTAGCA+CGG 0.575789 4_4:+32415477 None:intergenic
CATCGGAATTTAGACGGTGG+TGG 0.576248 4_4:+32417633 None:intergenic
GTGTTGTCATTAGGAAAGTG+AGG 0.576257 4_4:+32417804 None:intergenic
TCTTGAGTTAGCAAATGCAA+TGG 0.577069 4_4:-32409527 Msa0677840:CDS
TCTTGAGTTAGCAAATGCAA+TGG 0.577069 4_4:-32414406 Msa0677840:CDS
GAATGAGAAAGAAGAAGTTA+CGG 0.577141 4_4:+32417606 None:intergenic
TCTAGATGAAAACTCAATCA+GGG 0.581656 4_4:+32409651 None:intergenic
TCTAGATGAAAACTCAATCA+GGG 0.581656 4_4:+32414530 None:intergenic
GAGCAAATACAGAATCATAA+CGG 0.589241 4_4:+32415422 None:intergenic
TTTGTCTCAGAAACAGTTGG+AGG 0.595131 4_4:+32415550 None:intergenic
GCATCTCTATCCTCATCACT+AGG 0.603750 4_4:+32410478 None:intergenic
GCATCTCTATCCTCATCACT+AGG 0.603750 4_4:+32415358 None:intergenic
GGCGGCCATCGGAATTTAGA+CGG 0.607012 4_4:+32417627 None:intergenic
CACCACCGTCTAAATTCCGA+TGG 0.608671 4_4:-32417632 Msa0677840:exon
ACAAGCTAAAGAGCTGCTCA+AGG 0.612741 4_4:-32408673 Msa0677840:CDS
TAGAACCTGATCCTCGACAG+CGG 0.612855 4_4:+32407801 None:intergenic
TTGTCTCAGAAACAGTTGGA+GGG 0.613813 4_4:+32415551 None:intergenic
AAAGGATATTGCAGAAAGAG+CGG 0.616391 4_4:-32409605 Msa0677840:CDS
AAAGGATATTGCAGAAAGAG+CGG 0.616391 4_4:-32414484 Msa0677840:CDS
AGAAAGAGCGGGTGGAAATG+GGG 0.617727 4_4:-32409593 Msa0677840:CDS
AGAAAGAGCGGGTGGAAATG+GGG 0.617727 4_4:-32414472 Msa0677840:CDS
ATGCACAGAAGTTAGAAGAG+TGG 0.618365 4_4:-32414575 Msa0677840:CDS
AGCACGGAGTTATAGATACT+AGG 0.618724 4_4:+32415493 None:intergenic
GTTAATGTATGCTTGGAAGA+TGG 0.618779 4_4:+32410456 None:intergenic
GTTAATGTATGCTTGGAAGA+TGG 0.618779 4_4:+32415336 None:intergenic
GAGCAAATACAGGATCATAA+CGG 0.626380 4_4:+32410542 None:intergenic
ATCGGAACCAATGAAACGAG+TGG 0.635839 4_4:+32417537 None:intergenic
AACGAACAAAAGGTGAGTCG+AGG 0.638126 4_4:+32408014 None:intergenic
TATATGACCAACTCATGGAA+GGG 0.644279 4_4:-32410504 Msa0677840:CDS
TATATGACCAACTCATGGAA+GGG 0.644279 4_4:-32415384 Msa0677840:CDS
GAGTTATAGATACTAGGTAT+CGG 0.644904 4_4:+32415499 None:intergenic
CTAGAGAAGGAGAAGTTGAG+GGG 0.650582 4_4:-32409633 Msa0677840:CDS
CTAGAGAAGGAGAAGTTGAG+GGG 0.650582 4_4:-32414512 Msa0677840:CDS
GATATTGCAGAAAGAGCGGG+TGG 0.670621 4_4:-32409601 Msa0677840:CDS
GATATTGCAGAAAGAGCGGG+TGG 0.670621 4_4:-32414480 Msa0677840:CDS
GGAAGGGTATCCTAGTGATG+AGG 0.675183 4_4:-32410488 Msa0677840:CDS
GGAAGGGTATCCTAGTGATG+AGG 0.675183 4_4:-32415368 Msa0677840:CDS
CTTTGCACGTTGAGAAGCTG+TGG 0.682245 4_4:+32407707 None:intergenic
GGCCATCGGAATTTAGACGG+TGG 0.697948 4_4:+32417630 None:intergenic
GGGAAACTGATATCAGAATG+GGG 0.710296 4_4:-32407989 Msa0677840:three_prime_UTR
TGAGAAAGAAGAAGTTACGG+CGG 0.721704 4_4:+32417609 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAGTAAAAATTATAAAAAAA+GGG + chr4_4:32408967-32408986 None:intergenic 10.0%
!! ACAGTAAAAATTATAAAAAA+AGG + chr4_4:32408968-32408987 None:intergenic 10.0%
!!! TTAATTTTCTGTATAAATAA+AGG + chr4_4:32411482-32411501 None:intergenic 10.0%
!! CAGTAAAAATTATAAAATAA+AGG + chr4_4:32413831-32413850 None:intergenic 10.0%
!! AATAGAATGAGATTTATTTA+GGG + chr4_4:32407901-32407920 None:intergenic 15.0%
!!! TTAGAATTTGATGTTTTAAT+TGG - chr4_4:32408276-32408295 Msa0677840:intron 15.0%
!!! TTTTTATTTCTTTTCTCTTT+TGG + chr4_4:32409949-32409968 None:intergenic 15.0%
!!! CTAACTCTAAAAAATATTTT+GGG + chr4_4:32410594-32410613 None:intergenic 15.0%
!!! TCTAACTCTAAAAAATATTT+TGG + chr4_4:32410595-32410614 None:intergenic 15.0%
!!! AAAATATTTTTTAGAGTTAG+AGG - chr4_4:32410594-32410613 Msa0677840:CDS 15.0%
!! ATTTATTCAAAATCAAATCT+AGG + chr4_4:32410924-32410943 None:intergenic 15.0%
!! GTATAAATAAAGGAAATTAT+GGG + chr4_4:32411472-32411491 None:intergenic 15.0%
!! TGTATAAATAAAGGAAATTA+TGG + chr4_4:32411473-32411492 None:intergenic 15.0%
!! TACATTCAAATATATATCAT+AGG + chr4_4:32411952-32411971 None:intergenic 15.0%
!!! ATTGTTATATTTTCTGAAAA+AGG + chr4_4:32412226-32412245 None:intergenic 15.0%
!!! TTTTACATAATTCATTTGTT+CGG - chr4_4:32412656-32412675 Msa0677840:intron 15.0%
!!! ACAAAACTAAACAATATTTT+AGG - chr4_4:32412948-32412967 Msa0677840:intron 15.0%
!! ATTAAAATTTATCTTTCCAT+TGG - chr4_4:32413156-32413175 Msa0677840:intron 15.0%
!!! TTTACTTGATATTTTTAGAT+TGG - chr4_4:32414064-32414083 Msa0677840:intron 15.0%
!! TTAATTAATTAAAGTGACAA+AGG + chr4_4:32414379-32414398 None:intergenic 15.0%
!!! ACATTTTTAAACAAAAAGTT+GGG + chr4_4:32414420-32414439 None:intergenic 15.0%
!!! AACATTTTTAAACAAAAAGT+TGG + chr4_4:32414421-32414440 None:intergenic 15.0%
!!! AAAATATTTTTTAGAGTTAG+AGG - chr4_4:32410594-32410613 Msa0677840:CDS 15.0%
!! ATTTATTCAAAATCAAATCT+AGG + chr4_4:32410924-32410943 None:intergenic 15.0%
!! TGTAAAAACAAAATAAGTAT+TGG + chr4_4:32416147-32416166 None:intergenic 15.0%
!! ATGTAAATAAAGGAAATTAT+GGG + chr4_4:32416339-32416358 None:intergenic 15.0%
!! TATGTAAATAAAGGAAATTA+TGG + chr4_4:32416340-32416359 None:intergenic 15.0%
!!! CAATTTTTCTATGTAAATAA+AGG + chr4_4:32416349-32416368 None:intergenic 15.0%
!! ATGTAAATAAAGGAAATTAT+GGG + chr4_4:32416339-32416358 None:intergenic 15.0%
!! TATGTAAATAAAGGAAATTA+TGG + chr4_4:32416340-32416359 None:intergenic 15.0%
!!! TCAATTTTCTATGTAAATAA+AGG + chr4_4:32416528-32416547 None:intergenic 15.0%
!! TACATTCAAATATATATCAT+AGG + chr4_4:32411952-32411971 None:intergenic 15.0%
!!! ACTATTATATTTTCTGAAAA+AGG + chr4_4:32417273-32417292 None:intergenic 15.0%
!!! TTTTACATAATTCATTTGTT+CGG - chr4_4:32412656-32412675 Msa0677840:intron 15.0%
!! AAAATGAATGAAAATTCAGA+GGG + chr4_4:32407874-32407893 None:intergenic 20.0%
!! AAAAATGAATGAAAATTCAG+AGG + chr4_4:32407875-32407894 None:intergenic 20.0%
!! GAATAGAATGAGATTTATTT+AGG + chr4_4:32407902-32407921 None:intergenic 20.0%
!!! TTTTTTGAGAATTTGAGAAT+TGG - chr4_4:32408232-32408251 Msa0677840:intron 20.0%
!!! TTTTTGAGAATTTGAGAATT+GGG - chr4_4:32408233-32408252 Msa0677840:intron 20.0%
!!! ATGTTTTAATTGGAAGTATA+TGG - chr4_4:32408286-32408305 Msa0677840:intron 20.0%
!! TTGAATTGAGTTTGTAAAAT+TGG - chr4_4:32408523-32408542 Msa0677840:intron 20.0%
!! TTATGTATTATGTGTATGTT+TGG + chr4_4:32408769-32408788 None:intergenic 20.0%
!! AAAATTATAAAAAAAGGGCA+TGG + chr4_4:32408962-32408981 None:intergenic 20.0%
!! TAAATGCAGAGATAAAATTT+CGG + chr4_4:32409179-32409198 None:intergenic 20.0%
!! TTAATCAATTAAAGTGACAA+AGG + chr4_4:32409478-32409497 None:intergenic 20.0%
!! CATGTTATTATCTTGATAAA+AGG + chr4_4:32409880-32409899 None:intergenic 20.0%
!! ACTCAATGATTGAAATATAA+TGG - chr4_4:32410364-32410383 Msa0677840:intron 20.0%
!!! GTTTTTGATAATGTTGTAAT+TGG - chr4_4:32410680-32410699 Msa0677840:intron 20.0%
!! TCATTTAACAATAATCATTG+AGG + chr4_4:32410745-32410764 None:intergenic 20.0%
!!! AATGATTAGTTTTCTAGAAA+TGG + chr4_4:32411339-32411358 None:intergenic 20.0%
!! TCATAACATCTCAAAAATTT+AGG + chr4_4:32412325-32412344 None:intergenic 20.0%
!!! TTCTATTTTTCTCTATTGTT+GGG + chr4_4:32413016-32413035 None:intergenic 20.0%
!!! TTTCTATTTTTCTCTATTGT+TGG + chr4_4:32413017-32413036 None:intergenic 20.0%
!! AATAGAGAAAAATAGAAATC+TGG - chr4_4:32413019-32413038 Msa0677840:intron 20.0%
!!! TAATTTTAAAGCTTTTAGCT+TGG + chr4_4:32413113-32413132 None:intergenic 20.0%
!!! AAAATTACGAAGCATTAAAA+TGG - chr4_4:32413126-32413145 Msa0677840:intron 20.0%
!! TTGAATTCATTCTGTAAAAT+TGG - chr4_4:32413422-32413441 Msa0677840:intron 20.0%
!! TTATGTATTATGTGTATGTT+TGG + chr4_4:32408769-32408788 None:intergenic 20.0%
!!! GATATTAGTGTTATTAATCT+CGG - chr4_4:32413749-32413768 Msa0677840:CDS 20.0%
!! CATAGTATTATCTTGATAAA+AGG + chr4_4:32414759-32414778 None:intergenic 20.0%
!!! TTTTTATTTCTTTTCCCTTT+TGG + chr4_4:32414828-32414847 None:intergenic 20.0%
!! ACTCAATGATTGAAATATAA+TGG - chr4_4:32410364-32410383 Msa0677840:intron 20.0%
!!! GTTTTTGATAATGTTGTAAT+TGG - chr4_4:32410680-32410699 Msa0677840:intron 20.0%
!!! TTCATTGGTAATAAACATTT+AGG - chr4_4:32416612-32416631 Msa0677840:intron 20.0%
!! AACTGAAAAACTTAGTAAAT+AGG + chr4_4:32417217-32417236 None:intergenic 20.0%
! AAATTGAATATGACACGAAA+TGG - chr4_4:32407713-32407732 Msa0677840:three_prime_UTR 25.0%
! CAAAACACTTTGATTATGTT+TGG - chr4_4:32408473-32408492 Msa0677840:intron 25.0%
!! AAAATTGATTCTGACATGTT+TGG + chr4_4:32408727-32408746 None:intergenic 25.0%
! AATTTGGATTCAAAGATCAT+TGG + chr4_4:32408827-32408846 None:intergenic 25.0%
!! CACATAAATAATAGTTGATG+TGG - chr4_4:32409067-32409086 Msa0677840:intron 25.0%
! AAATAGAACACACATATTTC+AGG - chr4_4:32409132-32409151 Msa0677840:intron 25.0%
!! TCTGCATTTACTTGATATTT+TGG - chr4_4:32409189-32409208 Msa0677840:intron 25.0%
!! CTGCATTTACTTGATATTTT+GGG - chr4_4:32409190-32409209 Msa0677840:intron 25.0%
!!! TTTACTTGATATTTTGGGAT+TGG - chr4_4:32409195-32409214 Msa0677840:intron 25.0%
!! TTATTTTCCTTACCCTATAT+AGG + chr4_4:32409312-32409331 None:intergenic 25.0%
!! TTGTTCTTGAACTATCTTTT+AGG - chr4_4:32409372-32409391 Msa0677840:intron 25.0%
! TTAAACAAAAAGTTGAGCAA+GGG + chr4_4:32409513-32409532 None:intergenic 25.0%
! TTTAAACAAAAAGTTGAGCA+AGG + chr4_4:32409514-32409533 None:intergenic 25.0%
! GATTTCAGATTGATATTTAC+AGG + chr4_4:32409711-32409730 None:intergenic 25.0%
! GAAGTATGAATTTGCAATTT+AGG + chr4_4:32409927-32409946 None:intergenic 25.0%
!!! ATGACTAAGTATTGATAACA+AGG + chr4_4:32409983-32410002 None:intergenic 25.0%
! TTGTTATCAATACTTAGTCA+TGG - chr4_4:32409982-32410001 Msa0677840:intron 25.0%
!! GACAAAGTTAAATTTTCTCA+AGG - chr4_4:32410047-32410066 Msa0677840:intron 25.0%
! TAAAAACAAAAAACACACAC+AGG + chr4_4:32410320-32410339 None:intergenic 25.0%
!!! GTGTGTTTTTTGTTTTTAAG+TGG - chr4_4:32410322-32410341 Msa0677840:intron 25.0%
! CAAGAACTAATAATTTAAGC+AGG + chr4_4:32410646-32410665 None:intergenic 25.0%
! CATGACAACTTAAATGAATT+GGG + chr4_4:32411224-32411243 None:intergenic 25.0%
! TCATGACAACTTAAATGAAT+TGG + chr4_4:32411225-32411244 None:intergenic 25.0%
! TTCATCGGTAATAAACATTT+AGG - chr4_4:32411566-32411585 Msa0677840:intron 25.0%
!! GTGATCTCAATTTTATGAAA+AGG + chr4_4:32412081-32412100 None:intergenic 25.0%
! CTTCTAATTGAAAATTAAGC+TGG - chr4_4:32412141-32412160 Msa0677840:intron 25.0%
! AACTGAAAAACTTGGTAAAT+AGG + chr4_4:32412170-32412189 None:intergenic 25.0%
!! CATCTCAAAAATTTAGGTTA+AGG + chr4_4:32412319-32412338 None:intergenic 25.0%
!!! TGTTATGATTATAACTTGCT+TGG - chr4_4:32412337-32412356 Msa0677840:intron 25.0%
! AGAAGAAGAAAATAGAAGAA+AGG - chr4_4:32412407-32412426 Msa0677840:intron 25.0%
! GAAGAAGAAAATAGAAGAAA+GGG - chr4_4:32412408-32412427 Msa0677840:intron 25.0%
! ATGATCACCAGATAAAAATT+TGG - chr4_4:32412493-32412512 Msa0677840:intron 25.0%
! GAAAATCCAATTCATTATTC+AGG + chr4_4:32412689-32412708 None:intergenic 25.0%
! CAAAACACTTTGATTATGTT+TGG - chr4_4:32408473-32408492 Msa0677840:intron 25.0%
! TGGTAAAAGTGATTTATGTT+TGG - chr4_4:32413442-32413461 Msa0677840:intron 25.0%
!! AAAATTGATTCTGACATGTT+TGG + chr4_4:32408727-32408746 None:intergenic 25.0%
! CACATAAGTAATAGTTAATG+TGG - chr4_4:32413931-32413950 Msa0677840:intron 25.0%
! ATAGTTAATGTGGCTAAATA+AGG - chr4_4:32413941-32413960 Msa0677840:intron 25.0%
! TATTGGAACATCTTAAAATG+TGG + chr4_4:32414146-32414165 None:intergenic 25.0%
! ATTTACAGGAAAATTTCTCA+GGG + chr4_4:32409697-32409716 None:intergenic 25.0%
! TATTTACAGGAAAATTTCTC+AGG + chr4_4:32409698-32409717 None:intergenic 25.0%
! GATTTCAGATTGATATTTAC+AGG + chr4_4:32409711-32409730 None:intergenic 25.0%
! GAAGTATGAATTTGCAATTT+AGG + chr4_4:32409927-32409946 None:intergenic 25.0%
!!! ATGACTAAGTATTGATAACA+AGG + chr4_4:32409983-32410002 None:intergenic 25.0%
! TTGTTATCAATACTTAGTCA+TGG - chr4_4:32409982-32410001 Msa0677840:intron 25.0%
!! GACAAAGTTAAATTTTCTCA+AGG - chr4_4:32410047-32410066 Msa0677840:intron 25.0%
! CAAGAACTAATAATTTAAGC+AGG + chr4_4:32410646-32410665 None:intergenic 25.0%
! TCATTTAACAATAATCATCG+AGG + chr4_4:32415625-32415644 None:intergenic 25.0%
! CATGACAACTTAAATGAATT+GGG + chr4_4:32411224-32411243 None:intergenic 25.0%
! TCATGACAACTTAAATGAAT+TGG + chr4_4:32411225-32411244 None:intergenic 25.0%
!!! AATAAGTATTGGACTAAGTT+GGG + chr4_4:32416136-32416155 None:intergenic 25.0%
!!! AAATAAGTATTGGACTAAGT+TGG + chr4_4:32416137-32416156 None:intergenic 25.0%
!!! AATGATTAGTTTTCTAGAAC+TGG + chr4_4:32416206-32416225 None:intergenic 25.0%
! TTCATCGGTAATAAACATTT+AGG - chr4_4:32411566-32411585 Msa0677840:intron 25.0%
!! TTGGTAATAAACATTTAGGA+TGG - chr4_4:32416616-32416635 Msa0677840:intron 25.0%
!! GTGATCTCAATTTTATGAAA+AGG + chr4_4:32412081-32412100 None:intergenic 25.0%
! CTTCTAATTGAAAATTAAGC+TGG - chr4_4:32412141-32412160 Msa0677840:intron 25.0%
!!! TTTACTAAGTTTTTCAGTTC+AGG - chr4_4:32417218-32417237 Msa0677840:intron 25.0%
!!! TTACTAAGTTTTTCAGTTCA+GGG - chr4_4:32417219-32417238 Msa0677840:intron 25.0%
! TCATAACATGTCGAAAATTT+AGG + chr4_4:32417372-32417391 None:intergenic 25.0%
!!! TGTTATGATTATAACTTGCT+TGG - chr4_4:32412337-32412356 Msa0677840:intron 25.0%
! AGAAGAAGAAAATAGAAGAA+AGG - chr4_4:32412407-32412426 Msa0677840:intron 25.0%
! GAAGAAGAAAATAGAAGAAA+GGG - chr4_4:32412408-32412427 Msa0677840:intron 25.0%
! ATGATCACCAGATAAAAATT+TGG - chr4_4:32412493-32412512 Msa0677840:intron 25.0%
! GAAAATCCAATTCATTATTC+AGG + chr4_4:32412689-32412708 None:intergenic 25.0%
AATCTCATTCTATTCTATGC+CGG - chr4_4:32407907-32407926 Msa0677840:three_prime_UTR 30.0%
GAATGAGAAAGAAGAAGTTA+CGG + chr4_4:32407977-32407996 None:intergenic 30.0%
! ATTTTCGTCTCAATTTAGAG+TGG - chr4_4:32408316-32408335 Msa0677840:intron 30.0%
AGTATCATGTGTTTGATGTT+TGG - chr4_4:32408371-32408390 Msa0677840:intron 30.0%
!! ACATAATCAAAGTGTTTTGC+AGG + chr4_4:32408472-32408491 None:intergenic 30.0%
GTGTTATCAAACTCAGATAA+CGG - chr4_4:32408883-32408902 Msa0677840:intron 30.0%
TATTTATGTGCAGTCCATAT+TGG + chr4_4:32409057-32409076 None:intergenic 30.0%
! ATAGTTGATGTGGCTAAATA+AGG - chr4_4:32409077-32409096 Msa0677840:intron 30.0%
!! TGTTCTATTTTCAAGAGTGT+TGG + chr4_4:32409122-32409141 None:intergenic 30.0%
! TATAGGCCAGTGTATTTTAT+TGG + chr4_4:32409295-32409314 None:intergenic 30.0%
! TAAAATACACTGGCCTATAT+AGG - chr4_4:32409296-32409315 Msa0677840:intron 30.0%
! AAAATACACTGGCCTATATA+GGG - chr4_4:32409297-32409316 Msa0677840:intron 30.0%
AGCAGAAAAGCTTATAAAAG+TGG - chr4_4:32409340-32409359 Msa0677840:intron 30.0%
AGAAAAGCTTATAAAAGTGG+CGG - chr4_4:32409343-32409362 Msa0677840:intron 30.0%
TAAACAAAAAGTTGAGCAAG+GGG + chr4_4:32409512-32409531 None:intergenic 30.0%
AACAGTGAAACTGTAGAATA+AGG + chr4_4:32409578-32409597 None:intergenic 30.0%
! TATCAATCCACAGAATTTTG+GGG + chr4_4:32409658-32409677 None:intergenic 30.0%
! GTATCAATCCACAGAATTTT+GGG + chr4_4:32409659-32409678 None:intergenic 30.0%
GTGGTTTAAATATAATCAGC+AGG - chr4_4:32409759-32409778 Msa0677840:intron 30.0%
GAGTTATAGATACTAGGTAT+CGG + chr4_4:32410084-32410103 None:intergenic 30.0%
GAGCAAATACAGAATCATAA+CGG + chr4_4:32410161-32410180 None:intergenic 30.0%
TATGATTCTGTATTTGCTCT+TGG - chr4_4:32410162-32410181 Msa0677840:intron 30.0%
!! CAATCATTGAGTTGAACATA+TGG + chr4_4:32410356-32410375 None:intergenic 30.0%
!!! TTTTTAGAGTTAGAGGAAGA+TGG - chr4_4:32410601-32410620 Msa0677840:CDS 30.0%
GAACTAATAATTTAAGCAGG+AGG + chr4_4:32410643-32410662 None:intergenic 30.0%
TATGTATGTCGACAAAATAG+TGG - chr4_4:32410786-32410805 Msa0677840:intron 30.0%
ATGAGATGCAAATTTGTATC+TGG + chr4_4:32410826-32410845 None:intergenic 30.0%
TCTAGATGAAAACTCAATCA+GGG + chr4_4:32411053-32411072 None:intergenic 30.0%
! ATTGAGTTTTCATCTAGAGA+AGG - chr4_4:32411055-32411074 Msa0677840:intron 30.0%
! GTAACCTTTTCCAAAATTGT+TGG + chr4_4:32411202-32411221 None:intergenic 30.0%
!! AATAAGTATTGGGCTAAGTT+GGG + chr4_4:32411257-32411276 None:intergenic 30.0%
!! AAATAAGTATTGGGCTAAGT+TGG + chr4_4:32411258-32411277 None:intergenic 30.0%
! AATAAGTTGGCAATAGGAAT+TGG + chr4_4:32411371-32411390 None:intergenic 30.0%
! TAACGAAATAAGTTGGCAAT+AGG + chr4_4:32411377-32411396 None:intergenic 30.0%
TTAGGATGCACAAAAATTTC+TGG - chr4_4:32411584-32411603 Msa0677840:intron 30.0%
!! TGCACAAAAATTTCTGGTAA+AGG - chr4_4:32411590-32411609 Msa0677840:intron 30.0%
ATATGACTATCATCAGACTA+CGG - chr4_4:32411643-32411662 Msa0677840:intron 30.0%
AATAGACACTTTCACAATCT+TGG + chr4_4:32411692-32411711 None:intergenic 30.0%
! TACCACTAATAATTTGTGTG+TGG - chr4_4:32411713-32411732 Msa0677840:intron 30.0%
!! AAAAAGTGTTGATCGAGATT+TGG - chr4_4:32411804-32411823 Msa0677840:intron 30.0%
AACAACTTAATAGCATTGCA+AGG + chr4_4:32411908-32411927 None:intergenic 30.0%
TGAAGACTAAATGTAGCATA+TGG + chr4_4:32411997-32412016 None:intergenic 30.0%
GATTCAATCTTGAACTTCAA+GGG + chr4_4:32412044-32412063 None:intergenic 30.0%
AGATTCAATCTTGAACTTCA+AGG + chr4_4:32412045-32412064 None:intergenic 30.0%
!! TTTACCAAGTTTTTCAGTTC+AGG - chr4_4:32412171-32412190 Msa0677840:intron 30.0%
!! TTACCAAGTTTTTCAGTTCA+GGG - chr4_4:32412172-32412191 Msa0677840:intron 30.0%
!!! TTATAACTTGCTTGGTTTTG+CGG - chr4_4:32412345-32412364 Msa0677840:intron 30.0%
! GAGGAAACCAAATTTTTATC+TGG + chr4_4:32412503-32412522 None:intergenic 30.0%
TGCATACCTGAATAATGAAT+TGG - chr4_4:32412680-32412699 Msa0677840:intron 30.0%
ATTTGGATGATTTGATCCAA+TGG + chr4_4:32413175-32413194 None:intergenic 30.0%
! TCTCAATTGAACTTTGTTGT+TGG - chr4_4:32413334-32413353 Msa0677840:intron 30.0%
!! ACATAATCAAAGTGTTTTGC+AGG + chr4_4:32408472-32408491 None:intergenic 30.0%
TCAACAAGTAGAATCAATTC+AGG - chr4_4:32408673-32408692 Msa0677840:CDS 30.0%
AACTTGGATTCAAAGATCAT+TGG + chr4_4:32413700-32413719 None:intergenic 30.0%
! GTGTTATTAATCTCGGATAA+CGG - chr4_4:32413756-32413775 Msa0677840:CDS 30.0%
!! TGTTCTATTTTCAAGAGTGT+TGG + chr4_4:32409122-32409141 None:intergenic 30.0%
! AAGTCCCTTTTATGCATTTT+GGG + chr4_4:32414092-32414111 None:intergenic 30.0%
CTTAAAATGTGGCAAACAAA+AGG + chr4_4:32414135-32414154 None:intergenic 30.0%
GATGTTCCAATAAAATACAC+TGG - chr4_4:32414154-32414173 Msa0677840:intron 30.0%
! TATAGGCCAGTGTATTTTAT+TGG + chr4_4:32409295-32409314 None:intergenic 30.0%
! TAAAATACACTGGCCTATAT+AGG - chr4_4:32409296-32409315 Msa0677840:intron 30.0%
! AAAATACACTGGCCTATATA+GGG - chr4_4:32409297-32409316 Msa0677840:intron 30.0%
! TTATTTTCCTTGCCCTATAT+AGG + chr4_4:32414180-32414199 None:intergenic 30.0%
AGCAGAAAAGCTTATAAAAG+CGG - chr4_4:32409340-32409359 Msa0677840:intron 30.0%
TTAAACAAAAAGTTGGGCAA+GGG + chr4_4:32414414-32414433 None:intergenic 30.0%
TTTAAACAAAAAGTTGGGCA+AGG + chr4_4:32414415-32414434 None:intergenic 30.0%
AACAGTGAAACTGTAGAATA+AGG + chr4_4:32409578-32409597 None:intergenic 30.0%
! TATCAATCCACAGAATTTTG+AGG + chr4_4:32409658-32409677 None:intergenic 30.0%
GTGGTTTAAATATAATCAGC+AGG - chr4_4:32409759-32409778 Msa0677840:intron 30.0%
!! GTTGTGAATAGTTCTGAATT+CGG - chr4_4:32414778-32414797 Msa0677840:intron 30.0%
TGCAAATTCATACTTCCAAA+AGG - chr4_4:32409931-32409950 Msa0677840:intron 30.0%
GCAAATTCATACTTCCAAAA+GGG - chr4_4:32409932-32409951 Msa0677840:intron 30.0%
!!! GTGTGGTTTTTGTTTTTAAG+TGG - chr4_4:32415202-32415221 Msa0677840:intron 30.0%
!! CAATCATTGAGTTGAACATA+TGG + chr4_4:32410356-32410375 None:intergenic 30.0%
!!! TTTTTAGAGTTAGAGGAAGA+TGG - chr4_4:32410601-32410620 Msa0677840:CDS 30.0%
GAACTAATAATTTAAGCAGG+AGG + chr4_4:32410643-32410662 None:intergenic 30.0%
ATGAGATGCAAATTTGTATC+TGG + chr4_4:32410826-32410845 None:intergenic 30.0%
! AATGTCACTTACGAATTCTT+TGG - chr4_4:32415820-32415839 Msa0677840:intron 30.0%
TCTAGATGAAAACTCAATCA+GGG + chr4_4:32411053-32411072 None:intergenic 30.0%
! ATTGAGTTTTCATCTAGAGA+AGG - chr4_4:32411055-32411074 Msa0677840:intron 30.0%
! GTAACCTTTTCCAAAATTGT+TGG + chr4_4:32411202-32411221 None:intergenic 30.0%
! AATAAGTTGGCAATAGGAAT+TGG + chr4_4:32411371-32411390 None:intergenic 30.0%
! TAACGAAATAAGTTGGCAAT+AGG + chr4_4:32411377-32411396 None:intergenic 30.0%
TCGGTAATAAACATTTAGGA+TGG - chr4_4:32411570-32411589 Msa0677840:intron 30.0%
ATATGACTATCATCAGACTA+TGG - chr4_4:32411643-32411662 Msa0677840:intron 30.0%
CCACACACAAAAATTATTAG+TGG + chr4_4:32416766-32416785 None:intergenic 30.0%
! CCACTAATAATTTTTGTGTG+TGG - chr4_4:32416763-32416782 Msa0677840:intron 30.0%
! TAATAATTTTTGTGTGTGGC+TGG - chr4_4:32416767-32416786 Msa0677840:intron 30.0%
! AATAATTTTTGTGTGTGGCT+GGG - chr4_4:32416768-32416787 Msa0677840:intron 30.0%
!! AAAAAGTGTTGATCGAGATT+TGG - chr4_4:32411804-32411823 Msa0677840:intron 30.0%
AACAACTTAATAGCATTGCA+AGG + chr4_4:32411908-32411927 None:intergenic 30.0%
! ATTAAGTTGTTCTCACTTCT+CGG - chr4_4:32411917-32411936 Msa0677840:intron 30.0%
TGAAGACTAAATGTAGCATA+TGG + chr4_4:32411997-32412016 None:intergenic 30.0%
GATTCAATCTTGAACTTCAA+GGG + chr4_4:32412044-32412063 None:intergenic 30.0%
AGATTCAATCTTGAACTTCA+AGG + chr4_4:32412045-32412064 None:intergenic 30.0%
! CATGTCGAAAATTTAGGTTA+AGG + chr4_4:32417366-32417385 None:intergenic 30.0%
!!! TTATAACTTGCTTGGTTTTG+CGG - chr4_4:32412345-32412364 Msa0677840:intron 30.0%
!! TTGTCCCAATCATTTTGAAA+TGG + chr4_4:32417505-32417524 None:intergenic 30.0%
! GAGGAAACCAAATTTTTATC+TGG + chr4_4:32412503-32412522 None:intergenic 30.0%
! TGAGGTTTATGTGGATTACA+TGG + chr4_4:32407761-32407780 None:intergenic 35.0%
TTAGGAAAGTGAGGTTTATG+TGG + chr4_4:32407770-32407789 None:intergenic 35.0%
! TGTGTATGAGTGTTGTCATT+AGG + chr4_4:32407788-32407807 None:intergenic 35.0%
! GTCTCAATTTAGAGTGGAAT+GGG - chr4_4:32408322-32408341 Msa0677840:intron 35.0%
TCTCAATTGAACTTTGTCGT+TGG - chr4_4:32408435-32408454 Msa0677840:intron 35.0%
ACCTTCAACTCACTATTAGT+CGG + chr4_4:32408551-32408570 None:intergenic 35.0%
! TGATTCTACTTGTTGAAGCT+AGG + chr4_4:32408669-32408688 None:intergenic 35.0%
ACAAGTAGAATCAATTCACG+AGG - chr4_4:32408676-32408695 Msa0677840:CDS 35.0%
AAGCATAAAAGGGAGCAATT+TGG + chr4_4:32408843-32408862 None:intergenic 35.0%
! TTATCAAACTCAGATAACGG+AGG - chr4_4:32408886-32408905 Msa0677840:intron 35.0%
!! TATCAAACTCAGATAACGGA+GGG - chr4_4:32408887-32408906 Msa0677840:intron 35.0%
!!! ATTGGTGCTATCTTGTGTTT+TGG + chr4_4:32409039-32409058 None:intergenic 35.0%
AACACAAGATAGCACCAATA+TGG - chr4_4:32409040-32409059 Msa0677840:intron 35.0%
! AAGTCCCTCTTATGCATTTT+AGG + chr4_4:32409223-32409242 None:intergenic 35.0%
CTTCAAATGTGGCAAACAAA+AGG + chr4_4:32409267-32409286 None:intergenic 35.0%
! TATTGGAGCATCTTCAAATG+TGG + chr4_4:32409278-32409297 None:intergenic 35.0%
GATGCTCCAATAAAATACAC+TGG - chr4_4:32409286-32409305 Msa0677840:intron 35.0%
AAACAAAAAGTTGAGCAAGG+GGG + chr4_4:32409511-32409530 None:intergenic 35.0%
! GGTATCAATCCACAGAATTT+TGG + chr4_4:32409660-32409679 None:intergenic 35.0%
AATATAATCAGCAGGTGATG+CGG - chr4_4:32409767-32409786 Msa0677840:intron 35.0%
!! TGCTGTGAATAGTTCTGAAT+TGG - chr4_4:32409898-32409917 Msa0677840:intron 35.0%
!! GCTGTGAATAGTTCTGAATT+GGG - chr4_4:32409899-32409918 Msa0677840:intron 35.0%
AACTTTGTCTCAGAAACAGT+TGG + chr4_4:32410036-32410055 None:intergenic 35.0%
TGTATCTCATCAAATGTTGC+TGG + chr4_4:32410128-32410147 None:intergenic 35.0%
TATATGACCAACTCATGGAA+GGG - chr4_4:32410196-32410215 Msa0677840:intron 35.0%
GTTAATGTATGCTTGGAAGA+TGG + chr4_4:32410247-32410266 None:intergenic 35.0%
TCAATGCGTTAATGTATGCT+TGG + chr4_4:32410254-32410273 None:intergenic 35.0%
AGCATACATTAACGCATTGA+AGG - chr4_4:32410254-32410273 Msa0677840:intron 35.0%
!! TTGAGTTGAACATATGGTGT+AGG + chr4_4:32410350-32410369 None:intergenic 35.0%
TATCACCAAGAATCTAATGC+CGG - chr4_4:32410413-32410432 Msa0677840:intron 35.0%
GAGCTTTCCTAACATGATTT+CGG - chr4_4:32410453-32410472 Msa0677840:CDS 35.0%
! AATTTGTAGCTCTGCTTGAA+CGG + chr4_4:32410490-32410509 None:intergenic 35.0%
! CGTCATTTGTGAATCACTTT+TGG - chr4_4:32410535-32410554 Msa0677840:CDS 35.0%
AGTGCAAGTATCATTGTCTT+TGG - chr4_4:32410883-32410902 Msa0677840:intron 35.0%
CTCTAGATGAAAACTCAATC+AGG + chr4_4:32411054-32411073 None:intergenic 35.0%
AAAGGATATTGCAGAAAGAG+CGG - chr4_4:32411096-32411115 Msa0677840:intron 35.0%
TATAGTCGTTTCTTTGCAGT+CGG - chr4_4:32411139-32411158 Msa0677840:intron 35.0%
CTAACTCAAGAAGACGAAAA+AGG + chr4_4:32411165-32411184 None:intergenic 35.0%
TCTTGAGTTAGCAAATGCAA+TGG - chr4_4:32411174-32411193 Msa0677840:intron 35.0%
! TGCAATGGAACCAACAATTT+TGG - chr4_4:32411189-32411208 Msa0677840:intron 35.0%
!! GGAACCAACAATTTTGGAAA+AGG - chr4_4:32411195-32411214 Msa0677840:intron 35.0%
CTTCAGCTAACGAAATAAGT+TGG + chr4_4:32411384-32411403 None:intergenic 35.0%
GCTGAAACTATTGCATTACT+CGG - chr4_4:32411520-32411539 Msa0677840:intron 35.0%
AGCCACACACAAATTATTAG+TGG + chr4_4:32411718-32411737 None:intergenic 35.0%
! ACTAATAATTTGTGTGTGGC+TGG - chr4_4:32411717-32411736 Msa0677840:intron 35.0%
! CTAATAATTTGTGTGTGGCT+GGG - chr4_4:32411718-32411737 Msa0677840:intron 35.0%
AGCTGTTGAATTGACATAAG+AGG + chr4_4:32411760-32411779 None:intergenic 35.0%
!! GTCAATTCAACAGCTTTGTT+CGG - chr4_4:32411765-32411784 Msa0677840:intron 35.0%
TAAGTTGTTCTCACTTCTCT+TGG - chr4_4:32411919-32411938 Msa0677840:intron 35.0%
AAGTTGTTCTCACTTCTCTT+GGG - chr4_4:32411920-32411939 Msa0677840:intron 35.0%
AAACCCTGAACTGAAAAACT+TGG + chr4_4:32412178-32412197 None:intergenic 35.0%
!! AGTTTTTCAGTTCAGGGTTT+AGG - chr4_4:32412178-32412197 Msa0677840:intron 35.0%
CTAGTGATATACTGAGAACT+TGG - chr4_4:32412255-32412274 Msa0677840:intron 35.0%
TTGGAATGATCTCTTACTTC+AGG - chr4_4:32412383-32412402 Msa0677840:intron 35.0%
TGGAATGATCTCTTACTTCA+GGG - chr4_4:32412384-32412403 Msa0677840:intron 35.0%
TGAGGCCATTTCAAAATGAT+TGG - chr4_4:32412450-32412469 Msa0677840:intron 35.0%
GAGGCCATTTCAAAATGATT+GGG - chr4_4:32412451-32412470 Msa0677840:intron 35.0%
!! GTGTCCCAATCATTTTGAAA+TGG + chr4_4:32412458-32412477 None:intergenic 35.0%
TGGGAAACTGATATCAGAAT+GGG - chr4_4:32412543-32412562 Msa0677840:intron 35.0%
! TGAATTGGATTTTCTACAGC+CGG - chr4_4:32412695-32412714 Msa0677840:intron 35.0%
ACAAGTAGAATCAATTCAGG+AGG - chr4_4:32413549-32413568 Msa0677840:intron 35.0%
! TTATTAATCTCGGATAACGG+AGG - chr4_4:32413759-32413778 Msa0677840:CDS 35.0%
!! TATTAATCTCGGATAACGGA+GGG - chr4_4:32413760-32413779 Msa0677840:CDS 35.0%
!!! ATTGGTGCTGTCTTGTATTT+TGG + chr4_4:32413903-32413922 None:intergenic 35.0%
AATACAAGACAGCACCAATA+TGG - chr4_4:32413904-32413923 Msa0677840:intron 35.0%
TACTTATGTGCAGTCCATAT+TGG + chr4_4:32413921-32413940 None:intergenic 35.0%
AAATAGAACACACACATCTC+AGG - chr4_4:32413996-32414015 Msa0677840:intron 35.0%
! CAAGTCCCTTTTATGCATTT+TGG + chr4_4:32414093-32414112 None:intergenic 35.0%
!! TAAAAGGGACTTGCTATTTG+TGG - chr4_4:32414100-32414119 Msa0677840:intron 35.0%
TAAACAAAAAGTTGGGCAAG+GGG + chr4_4:32414413-32414432 None:intergenic 35.0%
TTTCTGACCTCAAAATTCTG+TGG - chr4_4:32414547-32414566 Msa0677840:CDS 35.0%
AATATAATCAGCAGGTGATG+CGG - chr4_4:32409767-32409786 Msa0677840:intron 35.0%
AACTTTGTCTCAGAAACAGT+TGG + chr4_4:32410036-32410055 None:intergenic 35.0%
GAGTTGTAGATACTAGGTAT+TGG + chr4_4:32414964-32414983 None:intergenic 35.0%
TGTATCTCATCAAATGTTGC+TGG + chr4_4:32410128-32410147 None:intergenic 35.0%
GAGCAAATACAGGATCATAA+CGG + chr4_4:32415041-32415060 None:intergenic 35.0%
TATGATCCTGTATTTGCTCT+TGG - chr4_4:32415042-32415061 Msa0677840:intron 35.0%
TATATGACCAACTCATGGAA+GGG - chr4_4:32410196-32410215 Msa0677840:intron 35.0%
GTTAATGTATGCTTGGAAGA+TGG + chr4_4:32410247-32410266 None:intergenic 35.0%
TCAATGCGTTAATGTATGCT+TGG + chr4_4:32410254-32410273 None:intergenic 35.0%
AGCATACATTAACGCATTGA+AGG - chr4_4:32410254-32410273 Msa0677840:intron 35.0%
!! TTGAGTTGAACATATGGTGT+AGG + chr4_4:32410350-32410369 None:intergenic 35.0%
TATCACCAAGAATCTAATGC+CGG - chr4_4:32410413-32410432 Msa0677840:intron 35.0%
AAGAATCTAATGCCGGATTT+GGG - chr4_4:32415300-32415319 Msa0677840:intron 35.0%
! GAGCTTTCCAAACATGATTT+TGG - chr4_4:32415333-32415352 Msa0677840:CDS 35.0%
! AATTTGTAGCTCTGCTTGAA+CGG + chr4_4:32410490-32410509 None:intergenic 35.0%
! CGTCATTTGTGAATCACTTT+TGG - chr4_4:32410535-32410554 Msa0677840:CDS 35.0%
TACGTATGTCGACAAAATAG+TGG - chr4_4:32415666-32415685 Msa0677840:intron 35.0%
AGTGCAAGTATCAATGTCTT+TGG - chr4_4:32415762-32415781 Msa0677840:intron 35.0%
ATGCACAGAAGTTAGAAGAA+TGG - chr4_4:32415884-32415903 Msa0677840:intron 35.0%
TGCACAGAAGTTAGAAGAAT+GGG - chr4_4:32415885-32415904 Msa0677840:intron 35.0%
CTCTAGATGAAAACTCAATC+AGG + chr4_4:32411054-32411073 None:intergenic 35.0%
AAAGGATATTGCAGAAAGAG+CGG - chr4_4:32411096-32411115 Msa0677840:intron 35.0%
TATAGTCGTTTCTTTGCAGT+AGG - chr4_4:32411139-32411158 Msa0677840:intron 35.0%
CTAACTCAAGAAGACGAAAA+AGG + chr4_4:32411165-32411184 None:intergenic 35.0%
TCTTGAGTTAGCAAATGCAA+TGG - chr4_4:32411174-32411193 Msa0677840:intron 35.0%
! TGCAATGGAACCAACAATTT+TGG - chr4_4:32411189-32411208 Msa0677840:intron 35.0%
!! GGAACCAACAATTTTGGAAA+AGG - chr4_4:32411195-32411214 Msa0677840:intron 35.0%
CTTCAGCTAACGAAATAAGT+TGG + chr4_4:32411384-32411403 None:intergenic 35.0%
GCTGAAACTATTGCATTACT+TGG - chr4_4:32411520-32411539 Msa0677840:intron 35.0%
! GCATTACTTGGTAACTTTGA+AGG - chr4_4:32416400-32416419 Msa0677840:intron 35.0%
TTAGGATGGACAAAAATTGC+TGG - chr4_4:32416452-32416471 Msa0677840:intron 35.0%
TGGACAAAAATTGCTGGTAA+AGG - chr4_4:32416458-32416477 Msa0677840:intron 35.0%
GCTGAAACTATTGCATTACT+TGG - chr4_4:32411520-32411539 Msa0677840:intron 35.0%
! GCATTACTTGGTAACTTTGA+AGG - chr4_4:32416400-32416419 Msa0677840:intron 35.0%
TTAGGATGGACAAAAATTGC+TGG - chr4_4:32416452-32416471 Msa0677840:intron 35.0%
TGGACAAAAATTGCTGGTAA+AGG - chr4_4:32416458-32416477 Msa0677840:intron 35.0%
!! GTCAATTCAACAGCTTTGTT+CGG - chr4_4:32411765-32411784 Msa0677840:intron 35.0%
! TTAAGTTGTTCTCACTTCTC+GGG - chr4_4:32411918-32411937 Msa0677840:intron 35.0%
!! AGTTTTTCAGTTCAGGGTTT+AGG - chr4_4:32412178-32412197 Msa0677840:intron 35.0%
CTAGTGATATACTGAGAACT+TGG - chr4_4:32412255-32412274 Msa0677840:intron 35.0%
TTCGAATGATCTCTTACTTC+AGG - chr4_4:32417430-32417449 Msa0677840:intron 35.0%
TCGAATGATCTCTTACTTCA+GGG - chr4_4:32417431-32417450 Msa0677840:CDS 35.0%
TGAGGCCATTTCAAAATGAT+TGG - chr4_4:32412450-32412469 Msa0677840:intron 35.0%
GAGGCCATTTCAAAATGATT+GGG - chr4_4:32412451-32412470 Msa0677840:intron 35.0%
TGGGAAACTGATATCAGAAT+GGG - chr4_4:32412543-32412562 Msa0677840:intron 35.0%
! TGAATTGGATTTTCTACAGC+CGG - chr4_4:32412695-32412714 Msa0677840:intron 35.0%
GTGTTGTCATTAGGAAAGTG+AGG + chr4_4:32407779-32407798 None:intergenic 40.0%
TGCCGGAAAATTTCTGATTC+CGG - chr4_4:32407924-32407943 Msa0677840:three_prime_UTR 40.0%
TGAGAAAGAAGAAGTTACGG+CGG + chr4_4:32407974-32407993 None:intergenic 40.0%
CACTCACTCAATCTTCTCAA+AGG - chr4_4:32408001-32408020 Msa0677840:three_prime_UTR 40.0%
CTTTCTTCCACTCGTTTCAT+TGG - chr4_4:32408036-32408055 Msa0677840:three_prime_UTR 40.0%
AAACCGAACTGCATCTGAAT+CGG + chr4_4:32408064-32408083 None:intergenic 40.0%
AGCATATCTTTGCGCTATGT+TGG - chr4_4:32408090-32408109 Msa0677840:CDS 40.0%
TGGAGTTCGAACTTCCAATT+CGG - chr4_4:32408110-32408129 Msa0677840:CDS 40.0%
! TTCCAATTCGGGTTCCAAAT+TGG - chr4_4:32408122-32408141 Msa0677840:CDS 40.0%
! AACCAATTTGGAACCCGAAT+TGG + chr4_4:32408127-32408146 None:intergenic 40.0%
TTTCAAACCTGACACAGAAG+AGG + chr4_4:32408160-32408179 None:intergenic 40.0%
! CGTCTCAATTTAGAGTGGAA+TGG - chr4_4:32408321-32408340 Msa0677840:intron 40.0%
! CAATTTAGAGTGGAATGGGT+TGG - chr4_4:32408326-32408345 Msa0677840:intron 40.0%
TAAGAACTGACACATTGACG+CGG - chr4_4:32408407-32408426 Msa0677840:intron 40.0%
! AATTTTTGCCCCTCTACAAG+TGG - chr4_4:32408741-32408760 Msa0677840:CDS 40.0%
! TGTTTGGTTCCACTTGTAGA+GGG + chr4_4:32408753-32408772 None:intergenic 40.0%
! ATGTTTGGTTCCACTTGTAG+AGG + chr4_4:32408754-32408773 None:intergenic 40.0%
CGCAAAGCTCAAGCATAAAA+GGG + chr4_4:32408853-32408872 None:intergenic 40.0%
! CCTTTTATGCTTGAGCTTTG+CGG - chr4_4:32408851-32408870 Msa0677840:intron 40.0%
AAGAACACTTGGCGAGATAA+CGG - chr4_4:32408924-32408943 Msa0677840:intron 40.0%
! TATAAAAAAAGGGCATGGCC+AGG + chr4_4:32408957-32408976 None:intergenic 40.0%
TGGTGCCTAAAATGCATAAG+AGG - chr4_4:32409215-32409234 Msa0677840:intron 40.0%
GGTGCCTAAAATGCATAAGA+GGG - chr4_4:32409216-32409235 Msa0677840:intron 40.0%
!! AGTTTAGCCTTGTAACCTCA+AGG - chr4_4:32409413-32409432 Msa0677840:intron 40.0%
!! GTTTTGACCCCAAAATTCTG+TGG - chr4_4:32409648-32409667 Msa0677840:CDS 40.0%
CTCAGAGACACAACAAAAGT+TGG + chr4_4:32409681-32409700 None:intergenic 40.0%
CTTTCATACATGACAGAGTG+TGG - chr4_4:32409740-32409759 Msa0677840:intron 40.0%
TTGTCTCAGAAACAGTTGGA+GGG + chr4_4:32410032-32410051 None:intergenic 40.0%
TTTGTCTCAGAAACAGTTGG+AGG + chr4_4:32410033-32410052 None:intergenic 40.0%
AGCACGGAGTTATAGATACT+AGG + chr4_4:32410090-32410109 None:intergenic 40.0%
TATCTATAACTCCGTGCTAC+AGG - chr4_4:32410092-32410111 Msa0677840:intron 40.0%
CACTGTATATGACCAACTCA+TGG - chr4_4:32410191-32410210 Msa0677840:intron 40.0%
GTATATGACCAACTCATGGA+AGG - chr4_4:32410195-32410214 Msa0677840:intron 40.0%
CACTCGTTCTAACCTGTATT+GGG + chr4_4:32410289-32410308 None:intergenic 40.0%
ACACTCGTTCTAACCTGTAT+TGG + chr4_4:32410290-32410309 None:intergenic 40.0%
ATCACCAAGAATCTAATGCC+GGG - chr4_4:32410414-32410433 Msa0677840:intron 40.0%
AAGAATCTAATGCCGGGTTT+GGG - chr4_4:32410420-32410439 Msa0677840:intron 40.0%
! ATTTGTAGCTCTGCTTGAAC+GGG + chr4_4:32410489-32410508 None:intergenic 40.0%
ATGCACAGAAGTTAGAAGAG+TGG - chr4_4:32411005-32411024 Msa0677840:intron 40.0%
TGCACAGAAGTTAGAAGAGT+GGG - chr4_4:32411006-32411025 Msa0677840:intron 40.0%
ATCTAGAGAAGGAGAAGTTG+AGG - chr4_4:32411066-32411085 Msa0677840:intron 40.0%
TCTAGAGAAGGAGAAGTTGA+GGG - chr4_4:32411067-32411086 Msa0677840:intron 40.0%
AGAAGTTGAGGGGACTTTAA+AGG - chr4_4:32411078-32411097 Msa0677840:intron 40.0%
AAGGATATTGCAGAAAGAGC+GGG - chr4_4:32411097-32411116 Msa0677840:intron 40.0%
CATGTTCAGGCTTCATTAGA+GGG - chr4_4:32411440-32411459 Msa0677840:intron 40.0%
ATGTTCAGGCTTCATTAGAG+GGG - chr4_4:32411441-32411460 Msa0677840:intron 40.0%
GCATTACTCGGTAACTTTGA+AGG - chr4_4:32411532-32411551 Msa0677840:intron 40.0%
AAGGAGAATGCTGCATTCAT+CGG - chr4_4:32411551-32411570 Msa0677840:intron 40.0%
TCGCAATCTGCTTTCTAAGT+TGG - chr4_4:32411834-32411853 Msa0677840:intron 40.0%
ACAAGCTAAAGAGCTGCTAA+AGG - chr4_4:32411858-32411877 Msa0677840:intron 40.0%
TGCTAAAGGAATACATCGAC+AGG - chr4_4:32411872-32411891 Msa0677840:intron 40.0%
TGAACCACAAAAGGCTAATG+AGG - chr4_4:32412432-32412451 Msa0677840:intron 40.0%
! ACTCACCTTTTGTTCGTTCT+GGG - chr4_4:32412524-32412543 Msa0677840:intron 40.0%
AGTTTCCCAGAACGAACAAA+AGG + chr4_4:32412532-32412551 None:intergenic 40.0%
CTGGGAAACTGATATCAGAA+TGG - chr4_4:32412542-32412561 Msa0677840:intron 40.0%
GGGAAACTGATATCAGAATG+GGG - chr4_4:32412544-32412563 Msa0677840:intron 40.0%
! ATGGGGCACTTTCATGATAT+TGG - chr4_4:32412561-32412580 Msa0677840:intron 40.0%
! AATTTTTGCCCCTCTACAAG+TGG - chr4_4:32408741-32408760 Msa0677840:CDS 40.0%
! TGTTTGGTTCCACTTGTAGA+GGG + chr4_4:32408753-32408772 None:intergenic 40.0%
! ATGTTTGGTTCCACTTGTAG+AGG + chr4_4:32408754-32408773 None:intergenic 40.0%
AAGCATAAAAGGGAGCAACT+TGG + chr4_4:32413716-32413735 None:intergenic 40.0%
CGCAAAGCTCAAGCATAAAA+GGG + chr4_4:32408853-32408872 None:intergenic 40.0%
! CCTTTTATGCTTGAGCTTTG+CGG - chr4_4:32408851-32408870 Msa0677840:intron 40.0%
! TCACTAAGTGTTCTTGCTGT+CGG + chr4_4:32413792-32413811 None:intergenic 40.0%
CTAGCTCAACAGTAAGAGTT+TGG - chr4_4:32409397-32409416 Msa0677840:intron 40.0%
AAACAAAAAGTTGGGCAAGG+GGG + chr4_4:32414412-32414431 None:intergenic 40.0%
CTTTCATACATGACAGTGTG+TGG - chr4_4:32414639-32414658 Msa0677840:intron 40.0%
TTGTCTCAGAAACAGTTGGA+GGG + chr4_4:32410032-32410051 None:intergenic 40.0%
TTTGTCTCAGAAACAGTTGG+AGG + chr4_4:32410033-32410052 None:intergenic 40.0%
AGCACAGAGTTGTAGATACT+AGG + chr4_4:32414970-32414989 None:intergenic 40.0%
TATCTACAACTCTGTGCTAC+AGG - chr4_4:32414972-32414991 Msa0677840:intron 40.0%
ACAAAGCCAAGAGCAAATAC+AGG + chr4_4:32410171-32410190 None:intergenic 40.0%
CACTGTATATGACCAACTCA+TGG - chr4_4:32410191-32410210 Msa0677840:intron 40.0%
GTATATGACCAACTCATGGA+AGG - chr4_4:32410195-32410214 Msa0677840:intron 40.0%
CACTCGTTCTAACCTGTATT+GGG + chr4_4:32410289-32410308 None:intergenic 40.0%
ACACTCGTTCTAACCTGTAT+TGG + chr4_4:32410290-32410309 None:intergenic 40.0%
AGTGTTTGTATGTCTGTGTG+TGG - chr4_4:32415185-32415204 Msa0677840:intron 40.0%
CAAATCCGGCATTAGATTCT+TGG + chr4_4:32415301-32415320 None:intergenic 40.0%
CAAGAATCTAATGCCGGATT+TGG - chr4_4:32415299-32415318 Msa0677840:intron 40.0%
AGAATCTAATGCCGGATTTG+GGG - chr4_4:32415301-32415320 Msa0677840:intron 40.0%
TGGGGTTCCAAAATCATGTT+TGG + chr4_4:32415343-32415362 None:intergenic 40.0%
! ATTTGTAGCTCTGCTTGAAC+GGG + chr4_4:32410489-32410508 None:intergenic 40.0%
ATCTAGAGAAGGAGAAGTTG+AGG - chr4_4:32411066-32411085 Msa0677840:intron 40.0%
TCTAGAGAAGGAGAAGTTGA+GGG - chr4_4:32411067-32411086 Msa0677840:intron 40.0%
AGAAGTTGAGGGGACTTTAA+AGG - chr4_4:32411078-32411097 Msa0677840:intron 40.0%
AAGGATATTGCAGAAAGAGC+GGG - chr4_4:32411097-32411116 Msa0677840:intron 40.0%
GATCTTTCTTCTCCATGTTC+AGG - chr4_4:32416294-32416313 Msa0677840:intron 40.0%
CATGTTCAGGCTTCATTAGA+GGG - chr4_4:32411440-32411459 Msa0677840:intron 40.0%
ATGTTCAGGCTTCATTAGAG+GGG - chr4_4:32411441-32411460 Msa0677840:intron 40.0%
AAGGAGAATGCTGCATTCAT+CGG - chr4_4:32411551-32411570 Msa0677840:intron 40.0%
CATGTTCAGGCTTCATTAGA+GGG - chr4_4:32411440-32411459 Msa0677840:intron 40.0%
ATGTTCAGGCTTCATTAGAG+GGG - chr4_4:32411441-32411460 Msa0677840:intron 40.0%
AAGGAGAATGCTGCATTCAT+TGG - chr4_4:32411551-32411570 Msa0677840:intron 40.0%
TCGCAATCTGCTTTCTAAGT+TGG - chr4_4:32411834-32411853 Msa0677840:intron 40.0%
TGCTCAAGGAATACATTGAC+AGG - chr4_4:32416921-32416940 Msa0677840:intron 40.0%
TGAACCACAAAAGGCTAATG+AGG - chr4_4:32412432-32412451 Msa0677840:intron 40.0%
! ACTCACCTTTTGTTCGTTCT+GGG - chr4_4:32412524-32412543 Msa0677840:intron 40.0%
AGTTTCCCAGAACGAACAAA+AGG + chr4_4:32412532-32412551 None:intergenic 40.0%
CTGGGAAACTGATATCAGAA+TGG - chr4_4:32412542-32412561 Msa0677840:intron 40.0%
GGGAAACTGATATCAGAATG+GGG - chr4_4:32412544-32412563 Msa0677840:intron 40.0%
! ATGGGGCACTTTCATGATAT+TGG - chr4_4:32412561-32412580 Msa0677840:intron 40.0%
CGCGTACCTGAATAATGAAT+TGG - chr4_4:32417727-32417746 Msa0677840:intron 40.0%
! GGCCGGAATCAGAAATTTTC+CGG + chr4_4:32407929-32407948 None:intergenic 45.0%
ATCGGAACCAATGAAACGAG+TGG + chr4_4:32408046-32408065 None:intergenic 45.0%
GTTCCGATTCAGATGCAGTT+CGG - chr4_4:32408058-32408077 Msa0677840:three_prime_UTR 45.0%
GGAGTTCGAACTTCCAATTC+GGG - chr4_4:32408111-32408130 Msa0677840:CDS 45.0%
CGGGTTCCAAATTGGTTGTT+CGG - chr4_4:32408130-32408149 Msa0677840:CDS 45.0%
GGAACACCGAACAACCAATT+TGG + chr4_4:32408139-32408158 None:intergenic 45.0%
! GCCGACTAATAGTGAGTTGA+AGG - chr4_4:32408547-32408566 Msa0677840:intron 45.0%
! CATGTTTGGTTGCTTTCGAG+TGG + chr4_4:32408713-32408732 None:intergenic 45.0%
! GTTTGGTTCCACTTGTAGAG+GGG + chr4_4:32408752-32408771 None:intergenic 45.0%
CCGCAAAGCTCAAGCATAAA+AGG + chr4_4:32408854-32408873 None:intergenic 45.0%
! ACACTGGCCTATATAGGGTA+AGG - chr4_4:32409302-32409321 Msa0677840:intron 45.0%
TGTTTGAACTCGGTACCTTG+AGG + chr4_4:32409431-32409450 None:intergenic 45.0%
GTACCGAGTTCAAACAACCT+CGG - chr4_4:32409435-32409454 Msa0677840:intron 45.0%
TACCGAGTTCAAACAACCTC+GGG - chr4_4:32409436-32409455 Msa0677840:intron 45.0%
TAGGATACCCTTCCATGAGT+TGG + chr4_4:32410206-32410225 None:intergenic 45.0%
GCATCTCTATCCTCATCACT+AGG + chr4_4:32410225-32410244 None:intergenic 45.0%
CAAACCCGGCATTAGATTCT+TGG + chr4_4:32410421-32410440 None:intergenic 45.0%
CAAGAATCTAATGCCGGGTT+TGG - chr4_4:32410419-32410438 Msa0677840:intron 45.0%
AGAATCTAATGCCGGGTTTG+GGG - chr4_4:32410421-32410440 Msa0677840:intron 45.0%
TGGGGTTCCGAAATCATGTT+AGG + chr4_4:32410463-32410482 None:intergenic 45.0%
CTAGAGAAGGAGAAGTTGAG+GGG - chr4_4:32411068-32411087 Msa0677840:intron 45.0%
GATCTCTCTTCTCCATGTTC+AGG - chr4_4:32411427-32411446 Msa0677840:intron 45.0%
CCTCTAATGAAGCCTGAACA+TGG + chr4_4:32411442-32411461 None:intergenic 45.0%
CCATGTTCAGGCTTCATTAG+AGG - chr4_4:32411439-32411458 Msa0677840:intron 45.0%
!!! GCGGCTGGATTTTGATTCTT+TGG - chr4_4:32412364-32412383 Msa0677840:intron 45.0%
AGAAAGGGCTGAACCACAAA+AGG - chr4_4:32412423-32412442 Msa0677840:intron 45.0%
!!! ATGGCCTCATTAGCCTTTTG+TGG + chr4_4:32412439-32412458 None:intergenic 45.0%
AACGAACAAAAGGTGAGTCG+AGG + chr4_4:32412522-32412541 None:intergenic 45.0%
! GACTCACCTTTTGTTCGTTC+TGG - chr4_4:32412523-32412542 Msa0677840:intron 45.0%
ACAGCTTCTCAACGTGCAAA+GGG - chr4_4:32412828-32412847 Msa0677840:intron 45.0%
! CATGTTTGGTTGCTTTCGAG+TGG + chr4_4:32408713-32408732 None:intergenic 45.0%
! GTTTGGTTCCACTTGTAGAG+GGG + chr4_4:32408752-32408771 None:intergenic 45.0%
CCGCAAAGCTCAAGCATAAA+AGG + chr4_4:32408854-32408873 None:intergenic 45.0%
TGGCGCCCAAAATGCATAAA+AGG - chr4_4:32414084-32414103 Msa0677840:intron 45.0%
GGCGCCCAAAATGCATAAAA+GGG - chr4_4:32414085-32414104 Msa0677840:intron 45.0%
!! AGTTTGGCCTTGTAACCTCA+AGG - chr4_4:32414314-32414333 Msa0677840:intron 45.0%
TGTTTGAACTCGGTACCTTG+AGG + chr4_4:32409431-32409450 None:intergenic 45.0%
GTACCGAGTTCAAACAACCT+CGG - chr4_4:32409435-32409454 Msa0677840:intron 45.0%
TACCGAGTTCAAACAACCTC+GGG - chr4_4:32409436-32409455 Msa0677840:intron 45.0%
CTCAGGGACACAACAAAAGT+TGG + chr4_4:32414580-32414599 None:intergenic 45.0%
TAGGATACCCTTCCATGAGT+TGG + chr4_4:32410206-32410225 None:intergenic 45.0%
GCATCTCTATCCTCATCACT+AGG + chr4_4:32410225-32410244 None:intergenic 45.0%
GAATCTAATGCCGGATTTGG+GGG - chr4_4:32415302-32415321 Msa0677840:intron 45.0%
CTAGAGAAGGAGAAGTTGAG+GGG - chr4_4:32411068-32411087 Msa0677840:intron 45.0%
CCTCTAATGAAGCCTGAACA+TGG + chr4_4:32411442-32411461 None:intergenic 45.0%
CCATGTTCAGGCTTCATTAG+AGG - chr4_4:32411439-32411458 Msa0677840:intron 45.0%
GGTAAAGGTTCTCCATGTTC+AGG - chr4_4:32416473-32416492 Msa0677840:intron 45.0%
CCTCTAATGAAGCCTGAACA+TGG + chr4_4:32411442-32411461 None:intergenic 45.0%
CCATGTTCAGGCTTCATTAG+AGG - chr4_4:32411439-32411458 Msa0677840:intron 45.0%
ACAAGCTAAAGAGCTGCTCA+AGG - chr4_4:32416907-32416926 Msa0677840:intron 45.0%
AGAAAGGGCTGAACCACAAA+AGG - chr4_4:32412423-32412442 Msa0677840:intron 45.0%
!!! ATGGCCTCATTAGCCTTTTG+TGG + chr4_4:32412439-32412458 None:intergenic 45.0%
AACGAACAAAAGGTGAGTCG+AGG + chr4_4:32412522-32412541 None:intergenic 45.0%
! GACTCACCTTTTGTTCGTTC+TGG - chr4_4:32412523-32412542 Msa0677840:intron 45.0%
ACAGCTTCTCAACGTGCAAA+GGG - chr4_4:32412828-32412847 Msa0677840:intron 45.0%
!! TATATAATAAAATAAGTATT+GGG + chr4_4:32411267-32411286 None:intergenic 5.0%
!! ATATATAATAAAATAAGTAT+TGG + chr4_4:32411268-32411287 None:intergenic 5.0%
!! AGTAAAAATTATAAAATAAA+GGG + chr4_4:32413830-32413849 None:intergenic 5.0%
CATCGGAATTTAGACGGTGG+TGG + chr4_4:32407950-32407969 None:intergenic 50.0%
CACCACCGTCTAAATTCCGA+TGG - chr4_4:32407948-32407967 Msa0677840:three_prime_UTR 50.0%
CAACCGACAGCAAGAACACT+TGG - chr4_4:32408913-32408932 Msa0677840:intron 50.0%
! TCGCCAAGTGTTCTTGCTGT+CGG + chr4_4:32408919-32408938 None:intergenic 50.0%
!! CGAGATAACGGATAGTAGCC+TGG - chr4_4:32408936-32408955 Msa0677840:intron 50.0%
!! GGACTTGCTATTTGTGCGAG+TGG - chr4_4:32409237-32409256 Msa0677840:intron 50.0%
CTCGGTACCTTGAGGTTACA+AGG + chr4_4:32409423-32409442 None:intergenic 50.0%
ACCGAGTTCAAACAACCTCG+GGG - chr4_4:32409437-32409456 Msa0677840:intron 50.0%
TCCCCGAGGTTGTTTGAACT+CGG + chr4_4:32409441-32409460 None:intergenic 50.0%
AGTTCAAACAACCTCGGGGA+CGG - chr4_4:32409441-32409460 Msa0677840:intron 50.0%
GACAATGAGCTCCTGTAGCA+CGG + chr4_4:32410106-32410125 None:intergenic 50.0%
!! GGAAGGGTATCCTAGTGATG+AGG - chr4_4:32410212-32410231 Msa0677840:intron 50.0%
AGGAAGATCCAGCCCAATAC+AGG - chr4_4:32410274-32410293 Msa0677840:intron 50.0%
CGTTCTAACCTGTATTGGGC+TGG + chr4_4:32410285-32410304 None:intergenic 50.0%
GAATCTAATGCCGGGTTTGG+GGG - chr4_4:32410422-32410441 Msa0677840:intron 50.0%
CTCTGCTTGAACGGGATTTG+GGG + chr4_4:32410481-32410500 None:intergenic 50.0%
GCTCTGCTTGAACGGGATTT+GGG + chr4_4:32410482-32410501 None:intergenic 50.0%
AGCTCTGCTTGAACGGGATT+TGG + chr4_4:32410483-32410502 None:intergenic 50.0%
TCTGTGCATCTACTCTGCAC+AGG + chr4_4:32410994-32411013 None:intergenic 50.0%
GATATTGCAGAAAGAGCGGG+TGG - chr4_4:32411100-32411119 Msa0677840:intron 50.0%
CAGAAAGAGCGGGTGGAAAT+GGG - chr4_4:32411107-32411126 Msa0677840:intron 50.0%
AGAAAGAGCGGGTGGAAATG+GGG - chr4_4:32411108-32411127 Msa0677840:intron 50.0%
!!! AACTTGCTTGGTTTTGCGGC+TGG - chr4_4:32412349-32412368 Msa0677840:intron 50.0%
TAGAACCTGATCCTCGACAG+CGG + chr4_4:32412735-32412754 None:intergenic 50.0%
CTTTGCACGTTGAGAAGCTG+TGG + chr4_4:32412829-32412848 None:intergenic 50.0%
CACAGCTTCTCAACGTGCAA+AGG - chr4_4:32412827-32412846 Msa0677840:intron 50.0%
!! GGGACTTGCTATTTGTGGAG+TGG - chr4_4:32414105-32414124 Msa0677840:intron 50.0%
! ACACTGGCCTATATAGGGCA+AGG - chr4_4:32414170-32414189 Msa0677840:intron 50.0%
CTCGGTACCTTGAGGTTACA+AGG + chr4_4:32409423-32409442 None:intergenic 50.0%
ACCGAGTTCAAACAACCTCG+GGG - chr4_4:32409437-32409456 Msa0677840:intron 50.0%
TCCCCGAGGTTGTTTGAACT+CGG + chr4_4:32409441-32409460 None:intergenic 50.0%
AGTTCAAACAACCTCGGGGA+CGG - chr4_4:32409441-32409460 Msa0677840:intron 50.0%
!! GGAAGGGTATCCTAGTGATG+AGG - chr4_4:32410212-32410231 Msa0677840:intron 50.0%
AGGAAGATCCAGCCCAATAC+AGG - chr4_4:32410274-32410293 Msa0677840:intron 50.0%
CGTTCTAACCTGTATTGGGC+TGG + chr4_4:32410285-32410304 None:intergenic 50.0%
TCGCAATTGTCCCCCAAATC+CGG + chr4_4:32415315-32415334 None:intergenic 50.0%
CTCTGCTTGAACGGGATTTG+GGG + chr4_4:32410481-32410500 None:intergenic 50.0%
GCTCTGCTTGAACGGGATTT+GGG + chr4_4:32410482-32410501 None:intergenic 50.0%
AGCTCTGCTTGAACGGGATT+TGG + chr4_4:32410483-32410502 None:intergenic 50.0%
TCTGTGCATCTACTCTGCAC+AGG + chr4_4:32410994-32411013 None:intergenic 50.0%
GATATTGCAGAAAGAGCGGG+TGG - chr4_4:32411100-32411119 Msa0677840:intron 50.0%
CAGAAAGAGCGGGTGGAAAT+GGG - chr4_4:32411107-32411126 Msa0677840:intron 50.0%
AGAAAGAGCGGGTGGAAATG+GGG - chr4_4:32411108-32411127 Msa0677840:intron 50.0%
!!! AACTTGCTTGGTTTTGCGGC+TGG - chr4_4:32412349-32412368 Msa0677840:intron 50.0%
TAGAACCTGATCCTCGACAG+CGG + chr4_4:32412735-32412754 None:intergenic 50.0%
CTTTGCACGTTGAGAAGCTG+TGG + chr4_4:32412829-32412848 None:intergenic 50.0%
CACAGCTTCTCAACGTGCAA+AGG - chr4_4:32412827-32412846 Msa0677840:intron 50.0%
! GGAATTTAGACGGTGGTGGC+CGG + chr4_4:32407946-32407965 None:intergenic 55.0%
GGCCATCGGAATTTAGACGG+TGG + chr4_4:32407953-32407972 None:intergenic 55.0%
GGCGGCCATCGGAATTTAGA+CGG + chr4_4:32407956-32407975 None:intergenic 55.0%
GAAGAAGTTACGGCGGCCAT+CGG + chr4_4:32407967-32407986 None:intergenic 55.0%
CGGTGTTCCTCTTCTGTGTC+AGG - chr4_4:32408150-32408169 Msa0677840:intron 55.0%
! CCATTTTACAACCGTCCCCG+AGG + chr4_4:32409455-32409474 None:intergenic 55.0%
CCTCGGGGACGGTTGTAAAA+TGG - chr4_4:32409452-32409471 Msa0677840:intron 55.0%
TCCCAATTGTCCCCCAAACC+CGG + chr4_4:32410435-32410454 None:intergenic 55.0%
GCAGAAAGAGCGGGTGGAAA+TGG - chr4_4:32411106-32411125 Msa0677840:intron 55.0%
!! AGCGGGTTGTATGGCGTAAC+CGG + chr4_4:32412717-32412736 None:intergenic 55.0%
!! ATCCTCGACAGCGGGTTGTA+TGG + chr4_4:32412726-32412745 None:intergenic 55.0%
AGAACCTGATCCTCGACAGC+GGG + chr4_4:32412734-32412753 None:intergenic 55.0%
! CCATTTTACAACCGTCCCCG+AGG + chr4_4:32409455-32409474 None:intergenic 55.0%
CCTCGGGGACGGTTGTAAAA+TGG - chr4_4:32409452-32409471 Msa0677840:intron 55.0%
GCAGAAAGAGCGGGTGGAAA+TGG - chr4_4:32411106-32411125 Msa0677840:intron 55.0%
!! AGCGGGTTGTATGGCGTAAC+CGG + chr4_4:32412717-32412736 None:intergenic 55.0%
!! ATCCTCGACAGCGGGTTGTA+TGG + chr4_4:32412726-32412745 None:intergenic 55.0%
AGAACCTGATCCTCGACAGC+GGG + chr4_4:32412734-32412753 None:intergenic 55.0%
TGCCGGGTTTGGGGGACAAT+TGG - chr4_4:32410430-32410449 Msa0677840:CDS 60.0%
GCCGGGTTTGGGGGACAATT+GGG - chr4_4:32410431-32410450 Msa0677840:CDS 60.0%
ACAACCCGCTGTCGAGGATC+AGG - chr4_4:32412727-32412746 Msa0677840:intron 60.0%
ACAACCCGCTGTCGAGGATC+AGG - chr4_4:32412727-32412746 Msa0677840:intron 60.0%
CGCCATACAACCCGCTGTCG+AGG - chr4_4:32412721-32412740 Msa0677840:intron 65.0%
CGCCATACAACCCGCTGTCG+AGG - chr4_4:32412721-32412740 Msa0677840:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 32407699 32417903 32407699 ID=Msa0677840;Name=Msa0677840
chr4_4 mRNA 32407699 32417903 32407699 ID=Msa0677840-mRNA-1;Parent=Msa0677840;Name=Msa0677840-mRNA-1;_AED=0.27;_eAED=0.27;_QI=202|0.62|0.66|1|0.75|0.66|9|388|468
chr4_4 exon 32407699 32408150 32407699 ID=Msa0677840-mRNA-1:exon:8010;Parent=Msa0677840-mRNA-1
chr4_4 exon 32408660 32408775 32408660 ID=Msa0677840-mRNA-1:exon:8009;Parent=Msa0677840-mRNA-1
chr4_4 exon 32409507 32409723 32409507 ID=Msa0677840-mRNA-1:exon:8008;Parent=Msa0677840-mRNA-1
chr4_4 exon 32410427 32410630 32410427 ID=Msa0677840-mRNA-1:exon:8007;Parent=Msa0677840-mRNA-1
chr4_4 exon 32413709 32413824 32413709 ID=Msa0677840-mRNA-1:exon:8006;Parent=Msa0677840-mRNA-1
chr4_4 exon 32414386 32414602 32414386 ID=Msa0677840-mRNA-1:exon:8005;Parent=Msa0677840-mRNA-1
chr4_4 exon 32415307 32415574 32415307 ID=Msa0677840-mRNA-1:exon:8004;Parent=Msa0677840-mRNA-1
chr4_4 exon 32417431 32417724 32417431 ID=Msa0677840-mRNA-1:exon:8003;Parent=Msa0677840-mRNA-1
chr4_4 exon 32417791 32417903 32417791 ID=Msa0677840-mRNA-1:exon:8002;Parent=Msa0677840-mRNA-1
chr4_4 five_prime_UTR 32417791 32417903 32417791 ID=Msa0677840-mRNA-1:five_prime_utr;Parent=Msa0677840-mRNA-1
chr4_4 five_prime_UTR 32417636 32417724 32417636 ID=Msa0677840-mRNA-1:five_prime_utr;Parent=Msa0677840-mRNA-1
chr4_4 CDS 32417431 32417635 32417431 ID=Msa0677840-mRNA-1:cds;Parent=Msa0677840-mRNA-1
chr4_4 CDS 32415307 32415574 32415307 ID=Msa0677840-mRNA-1:cds;Parent=Msa0677840-mRNA-1
chr4_4 CDS 32414386 32414602 32414386 ID=Msa0677840-mRNA-1:cds;Parent=Msa0677840-mRNA-1
chr4_4 CDS 32413709 32413824 32413709 ID=Msa0677840-mRNA-1:cds;Parent=Msa0677840-mRNA-1
chr4_4 CDS 32410427 32410630 32410427 ID=Msa0677840-mRNA-1:cds;Parent=Msa0677840-mRNA-1
chr4_4 CDS 32409507 32409723 32409507 ID=Msa0677840-mRNA-1:cds;Parent=Msa0677840-mRNA-1
chr4_4 CDS 32408660 32408775 32408660 ID=Msa0677840-mRNA-1:cds;Parent=Msa0677840-mRNA-1
chr4_4 CDS 32408087 32408150 32408087 ID=Msa0677840-mRNA-1:cds;Parent=Msa0677840-mRNA-1
chr4_4 three_prime_UTR 32407699 32408086 32407699 ID=Msa0677840-mRNA-1:three_prime_utr;Parent=Msa0677840-mRNA-1
Gene Sequence

>Msa0677840

ATGGCCGCCGTAACTTCTTCTTTCTCATTCTCAACACTCACTCAATCTTCTCAAAGGAAATTAACAACGCTTTCTTCCACTCGTTTCATTGGTTCCGATTCAGATGCAGTTCGGTTTCGTTTGAGCATATCTTTGCGCTATGTTGGAGTTCGAACTTCCAATTCGGGTTCCAAATTGGTTGTTCGGTGTTCCTCTTCTGTGTCAGACCCTCCAACTGTTTCTGAGACAAAGTTAAATTTTCTCAAGGCATATAAGCGACCGATACCTAGTATCTATAACTCCGTGCTACAGGAGCTCATTGTCCAGCAACATTTGATGAGATACAAGAAGTCATACCGTTATGATTCTGTATTTGCTCTTGGCTTTGTCACTGTATATGACCAACTCATGGAAGGGTATCCTAGTGATGAGGATAGAGATGCCATCTTCCAAGCATACATTAACGCATTGAAGGAAGATCCAGCCCAATACAGAGTAGATGCACAGAAGTTAGAAGAGTGGGCTCGTGCTCAAAATGCAACTTCCCTGATTGAGTTTTCATCTAGAGAAGGAGAAGTTGAGGGGACTTTAAAGGATATTGCAGAAAGAGCGGGTGGAAATGGGGATTTCAGTTATAGTCGTTTCTTTGCAGTCGGCCTTTTTCGTCTTCTTGAGTTAGCAAATGCAATGGAACCAACAATTTTGGAAAAGCTTTGTTCGGCTTTGAATATCAACAAAAAAAGTGTTGATCGAGATTTGGACGTGTATCGCAATCTGCTTTCTAAGTTGGTACAAGCTAAAGAGCTGCTAAAGGAATACATCGACAGTATCTACAACTCTGTGCTACAGGAGCTCATTGTCCAGCAACATTTGATGAGATACAAGAAGTCATACCGTTATGATCCTGTATTTGCTCTTGGCTTTGTCACTGTATATGACCAACTCATGGAAGGGTATCCTAGTGATGAGGATAGAGATGCCATCTTCCAAGCATACATTAACGCATTGAAGGAAGATCCAGCCCAATACAGAGTAGATGCACAGAAGTTAGAAGAATGGGCTCGTGCTCAAAATGCAACTTCCCTGATTGAGTTTTCATCTAGAGAAGGAGAAGTTGAGGGGACTTTAAAGGATATTGCAGAAAGAGCGGGTGGAAATGGGGATTTCAGTTATAGTCGTTTCTTTGCAGTAGGCCTTTTTCGTCTTCTTGAGTTAGCAAATGCAATGGAACCAACAATTTTGGAAAAGCTTTGTTCGGCTTTGAATATCAACAAAAAAAGTGTTGATCGAGATTTGGACGTGTATCGCAATCTGCTTTCTAAGTTGGTACAAGCTAAAGAGCTGCTCAAGGAATACATTGACAGGGAGAAGAAGAAAATAGAAGAAAGGGCTGAACCACAAAAGGCTAATGAGGCCATTTCAAAATGA

Protein sequence

>Msa0677840

MAAVTSSFSFSTLTQSSQRKLTTLSSTRFIGSDSDAVRFRLSISLRYVGVRTSNSGSKLVVRCSSSVSDPPTVSETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKKSYRYDSVFALGFVTVYDQLMEGYPSDEDRDAIFQAYINALKEDPAQYRVDAQKLEEWARAQNATSLIEFSSREGEVEGTLKDIAERAGGNGDFSYSRFFAVGLFRLLELANAMEPTILEKLCSALNINKKSVDRDLDVYRNLLSKLVQAKELLKEYIDSIYNSVLQELIVQQHLMRYKKSYRYDPVFALGFVTVYDQLMEGYPSDEDRDAIFQAYINALKEDPAQYRVDAQKLEEWARAQNATSLIEFSSREGEVEGTLKDIAERAGGNGDFSYSRFFAVGLFRLLELANAMEPTILEKLCSALNINKKSVDRDLDVYRNLLSKLVQAKELLKEYIDREKKKIEERAEPQKANEAISK*