Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437460 | Q02735.1 | 99.896 | 966 | 1 | 0 | 1 | 966 | 1 | 966 | 0.0 | 1997 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437460 | sp|Q02735|CAPP_MEDSA | 99.896 | 966 | 1 | 0 | 1 | 966 | 1 | 966 | 0.0 | 1997 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437460 | G7IH71 | 99.793 | 966 | 2 | 0 | 1 | 966 | 1 | 966 | 0.0 | 1993 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012790 | Msa0437460 | 0.813044 | 3.124184e-51 | -8.615850e-47 |
| Msa0214830 | Msa0437460 | 0.890051 | 1.397325e-73 | -8.615850e-47 |
| Msa0387300 | Msa0437460 | 0.803603 | 3.222219e-49 | -8.615850e-47 |
| Msa0434140 | Msa0437460 | 0.817381 | 3.396036e-52 | -8.615850e-47 |
| Msa0437460 | Msa0477660 | 0.812621 | 3.867374e-51 | -8.615850e-47 |
| Msa0437460 | Msa0521720 | 0.810981 | 8.797107e-51 | -8.615850e-47 |
| Msa0437460 | Msa0622070 | 0.804457 | 2.140846e-49 | -8.615850e-47 |
| Msa0437460 | Msa1304980 | 0.814422 | 1.553587e-51 | -8.615850e-47 |
| Msa0294220 | Msa0437460 | 0.907749 | 3.620871e-81 | -8.615850e-47 |
| Msa0332790 | Msa0437460 | 0.944313 | 2.451663e-103 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437460 | MtrunA17_Chr2g0315891 | 99.793 | 966 | 2 | 0 | 1 | 966 | 1 | 966 | 0.0 | 1993 |
| Msa0437460 | MtrunA17_Chr8g0360571 | 90.900 | 967 | 87 | 1 | 1 | 966 | 1 | 967 | 0.0 | 1812 |
| Msa0437460 | MtrunA17_Chr2g0325821 | 85.124 | 968 | 140 | 3 | 1 | 966 | 1 | 966 | 0.0 | 1691 |
| Msa0437460 | MtrunA17_Chr4g0041131 | 84.161 | 966 | 150 | 2 | 2 | 966 | 3 | 966 | 0.0 | 1687 |
| Msa0437460 | MtrunA17_Chr1g0198921 | 45.048 | 626 | 291 | 6 | 359 | 966 | 449 | 1039 | 2.88e-167 | 516 |
| Msa0437460 | MtrunA17_Chr1g0198921 | 38.603 | 272 | 154 | 5 | 76 | 347 | 71 | 329 | 1.89e-48 | 187 |
| Msa0437460 | MtrunA17_Chr0c01g0489521 | 45.768 | 638 | 281 | 8 | 360 | 966 | 549 | 1152 | 1.44e-166 | 518 |
| Msa0437460 | MtrunA17_Chr0c01g0489521 | 32.682 | 358 | 207 | 8 | 33 | 369 | 62 | 406 | 1.39e-45 | 178 |
| Msa0437460 | MtrunA17_Chr1g0148101 | 60.053 | 378 | 85 | 7 | 461 | 838 | 1 | 312 | 2.25e-138 | 416 |
| Msa0437460 | MtrunA17_Chr1g0148111 | 45.455 | 132 | 30 | 4 | 337 | 428 | 9 | 138 | 1.52e-21 | 92.4 |
| Msa0437460 | MtrunA17_Chr1g0148091 | 82.353 | 51 | 9 | 0 | 916 | 966 | 1 | 51 | 1.64e-20 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437460 | AT1G53310.2 | 84.917 | 968 | 143 | 3 | 1 | 966 | 1 | 967 | 0.0 | 1710 |
| Msa0437460 | AT1G53310.1 | 84.917 | 968 | 143 | 3 | 1 | 966 | 1 | 967 | 0.0 | 1710 |
| Msa0437460 | AT1G53310.3 | 84.917 | 968 | 143 | 3 | 1 | 966 | 1 | 967 | 0.0 | 1710 |
| Msa0437460 | AT3G14940.1 | 85.036 | 969 | 141 | 4 | 1 | 966 | 1 | 968 | 0.0 | 1704 |
| Msa0437460 | AT3G14940.2 | 85.036 | 969 | 141 | 4 | 1 | 966 | 1 | 968 | 0.0 | 1704 |
| Msa0437460 | AT2G42600.2 | 83.230 | 966 | 156 | 5 | 2 | 966 | 3 | 963 | 0.0 | 1655 |
| Msa0437460 | AT2G42600.1 | 83.230 | 966 | 156 | 5 | 2 | 966 | 3 | 963 | 0.0 | 1655 |
| Msa0437460 | AT2G42600.3 | 83.230 | 966 | 156 | 5 | 2 | 966 | 3 | 963 | 0.0 | 1655 |
| Msa0437460 | AT1G68750.1 | 46.117 | 618 | 284 | 5 | 365 | 966 | 448 | 1032 | 3.07e-174 | 535 |
| Msa0437460 | AT1G68750.1 | 35.032 | 314 | 182 | 5 | 35 | 340 | 23 | 322 | 1.19e-46 | 182 |
| Msa0437460 | AT3G42628.1 | 83.721 | 43 | 7 | 0 | 2 | 44 | 3 | 45 | 2.17e-15 | 71.2 |
Find 251 sgRNAs with CRISPR-Local
Find 370 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACACGGCGAAGAAATTT+AGG | 0.146316 | 3_3:+1205800 | None:intergenic |
| GCAGAACACTGGTTAAATTT+TGG | 0.162246 | 3_3:-1202645 | Msa0437460:exon |
| ATTACCAAACATTTGGAAAT+TGG | 0.181986 | 3_3:-1204718 | Msa0437460:CDS |
| TTGAGGCAAGTTTCCACTTT+TGG | 0.188224 | 3_3:-1204805 | Msa0437460:CDS |
| CCAAGCTCTTCAAGTTTCTT+AGG | 0.203670 | 3_3:+1206568 | None:intergenic |
| AGAGATCCGTGAATTGTTTC+TGG | 0.211569 | 3_3:+1204142 | None:intergenic |
| ACAATCAATGGCCTTTCTTT+AGG | 0.212782 | 3_3:-1203473 | Msa0437460:CDS |
| ATCTCTAATTTCATCGGTTT+GGG | 0.213025 | 3_3:+1204606 | None:intergenic |
| ATGATTGGATATTCTGATTC+AGG | 0.219510 | 3_3:-1204331 | Msa0437460:CDS |
| TGTAGGCTTGGAAAACATTA+AGG | 0.228524 | 3_3:+1202846 | None:intergenic |
| AACAACGGAACGACTCTTAA+TGG | 0.230787 | 3_3:+1204451 | None:intergenic |
| CAGCAGACTCTTTCGATATT+GGG | 0.240167 | 3_3:+1202777 | None:intergenic |
| AAGGCGCGCCATTCTGGTTT+TGG | 0.252834 | 3_3:+1203998 | None:intergenic |
| CAAAGGATCTGTGGCCATTT+GGG | 0.253225 | 3_3:-1203371 | Msa0437460:CDS |
| GTTACTTCCATGAAACAATT+TGG | 0.256834 | 3_3:-1205832 | Msa0437460:CDS |
| CAATCAATGGCCTTTCTTTA+GGG | 0.264660 | 3_3:-1203472 | Msa0437460:CDS |
| GTGAGGAACACTTGTGCTTT+AGG | 0.265728 | 3_3:-1204078 | Msa0437460:CDS |
| CACCCATCCAAGAAGAAAAT+TGG | 0.268655 | 3_3:+1205720 | None:intergenic |
| CCCAGCTCTCATTTCATCTT+GGG | 0.269827 | 3_3:+1205859 | None:intergenic |
| CATCTCTAATTTCATCGGTT+TGG | 0.272165 | 3_3:+1204605 | None:intergenic |
| TCCATCAAGGCGCGCCATTC+TGG | 0.274267 | 3_3:+1203992 | None:intergenic |
| CGCACCTCCACCTTGTAGTT+TGG | 0.275418 | 3_3:+1202803 | None:intergenic |
| ATCAAAGTCGCACAGAAATT+TGG | 0.275537 | 3_3:-1204250 | Msa0437460:CDS |
| CTCATTTCATCTTGGGGAGT+TGG | 0.310060 | 3_3:+1205866 | None:intergenic |
| CCGGTTAATGTACCAGTTTA+TGG | 0.314247 | 3_3:+1204375 | None:intergenic |
| TTGGTGAATGTGGCTTCTTC+AGG | 0.316205 | 3_3:+1205059 | None:intergenic |
| CCACTAGGCCTTCTCTTTGC+CGG | 0.317888 | 3_3:+1203642 | None:intergenic |
| TCAGCAGACTCTTTCGATAT+TGG | 0.323283 | 3_3:+1202776 | None:intergenic |
| TGCAGCATGGCAGCTATATA+AGG | 0.339434 | 3_3:-1204287 | Msa0437460:CDS |
| TCAAAGGATCTGTGGCCATT+TGG | 0.340214 | 3_3:-1203372 | Msa0437460:CDS |
| TACCATTGATTTAGTTGAAA+TGG | 0.341150 | 3_3:-1203448 | Msa0437460:CDS |
| GGATCCAATTTCCAAATGTT+TGG | 0.341456 | 3_3:+1204714 | None:intergenic |
| CACTTGTAAGGCTTGATATA+AGG | 0.341882 | 3_3:-1204777 | Msa0437460:CDS |
| GCAATTGATGTTATGTTTCA+AGG | 0.346499 | 3_3:-1202426 | Msa0437460:three_prime_UTR |
| CACCCTTCCAAATTGTTTCA+TGG | 0.358578 | 3_3:+1205825 | None:intergenic |
| TCCCAGCTCTCATTTCATCT+TGG | 0.360325 | 3_3:+1205858 | None:intergenic |
| TCTTCCATGATGCAGAGTTT+TGG | 0.360614 | 3_3:-1205196 | Msa0437460:intron |
| CCATAAACTGGTACATTAAC+CGG | 0.360815 | 3_3:-1204375 | Msa0437460:CDS |
| TGAGTATGATGCTTTGTTGT+TGG | 0.361220 | 3_3:-1207356 | Msa0437460:CDS |
| CTTTCTTCAACTTGTTCCTT+CGG | 0.361856 | 3_3:+1206437 | None:intergenic |
| GGATGCCATTACCAAACATT+TGG | 0.362761 | 3_3:-1204725 | Msa0437460:CDS |
| GCTCCAAAGCCCAGCCATAC+TGG | 0.362870 | 3_3:+1203555 | None:intergenic |
| GCCAGCAGCAATACCCTTCA+TGG | 0.362914 | 3_3:+1202670 | None:intergenic |
| CTTCCAGTATGGCTGGGCTT+TGG | 0.367192 | 3_3:-1203558 | Msa0437460:CDS |
| GTCACTTCAGGAGTCACTCT+TGG | 0.368265 | 3_3:+1205589 | None:intergenic |
| CCAGGAGCATATTCACTTGT+TGG | 0.371381 | 3_3:+1202716 | None:intergenic |
| ACCAGAATGGCGCGCCTTGA+TGG | 0.372526 | 3_3:-1203993 | Msa0437460:CDS |
| GTTTCATCTTCCAGTATGGC+TGG | 0.372895 | 3_3:-1203565 | Msa0437460:CDS |
| CAAGGTTTCATCTTCCAGTA+TGG | 0.380324 | 3_3:-1203569 | Msa0437460:CDS |
| CAAACATCCCTTGTCACTTC+AGG | 0.380888 | 3_3:+1205577 | None:intergenic |
| TTGGATAAGAGGAGCATTGT+AGG | 0.385728 | 3_3:+1205739 | None:intergenic |
| CTCGGTTGTTCTCCATAAAC+TGG | 0.393509 | 3_3:-1204387 | Msa0437460:CDS |
| CTTCTCAATTGTTCCCCAAA+TGG | 0.401397 | 3_3:+1203357 | None:intergenic |
| TGTACATCTCTTGCAGCATA+TGG | 0.405277 | 3_3:+1203493 | None:intergenic |
| CTGAGTCTTTGCTTCAAGTA+GGG | 0.409192 | 3_3:+1202893 | None:intergenic |
| TGATGCACAGCTTAGACAAT+TGG | 0.412676 | 3_3:-1207413 | Msa0437460:CDS |
| TGAGTCTGCTCCTGCTGCAT+TGG | 0.420359 | 3_3:-1204410 | Msa0437460:CDS |
| AACTGCACCGTCTGATGTGC+TGG | 0.422950 | 3_3:-1204512 | Msa0437460:CDS |
| AATTTCCAAATGTTTGGTAA+TGG | 0.423777 | 3_3:+1204720 | None:intergenic |
| TTCGTTTCTAACTAACTGTC+TGG | 0.434189 | 3_3:-1207903 | Msa0437460:five_prime_UTR |
| ATTTCTTCGCCGTGTTGATA+CGG | 0.434747 | 3_3:-1205795 | Msa0437460:CDS |
| GAAGTTGCAAAACACTATAT+AGG | 0.436809 | 3_3:-1205328 | Msa0437460:intron |
| GTATTGCAGCACTGAATGAT+AGG | 0.437095 | 3_3:-1203404 | Msa0437460:CDS |
| AACTAAGAAACTCCTACTTC+AGG | 0.437226 | 3_3:-1203322 | Msa0437460:intron |
| ATTTCATCTTGGGGAGTTGG+TGG | 0.438410 | 3_3:+1205869 | None:intergenic |
| CTGAACCTCTTCAGCTAAGT+TGG | 0.439952 | 3_3:+1206471 | None:intergenic |
| AAGTGAATATGCTCCTGGTT+TGG | 0.445415 | 3_3:-1202711 | Msa0437460:CDS |
| GAACTTCCATCTGACAACTT+TGG | 0.446074 | 3_3:-1204556 | Msa0437460:CDS |
| CAAGAAGAAAATTGGATAAG+AGG | 0.446279 | 3_3:+1205728 | None:intergenic |
| TCATTCAGTGCTGCAATACC+AGG | 0.448349 | 3_3:+1203408 | None:intergenic |
| CCTAAGAAACTTGAAGAGCT+TGG | 0.450572 | 3_3:-1206568 | Msa0437460:CDS |
| ATCCTACCATACTCCATCTC+TGG | 0.451448 | 3_3:+1203681 | None:intergenic |
| TCTCTTCGTGTGACAGTTCA+AGG | 0.453254 | 3_3:-1204124 | Msa0437460:CDS |
| TCATCGGTTTGGGGTAGGTC+AGG | 0.455429 | 3_3:+1204616 | None:intergenic |
| TTGATCACAAGTTTCGATGC+AGG | 0.461534 | 3_3:-1206541 | Msa0437460:CDS |
| CACCATTTCAACTAAATCAA+TGG | 0.462445 | 3_3:+1203446 | None:intergenic |
| ACACGGTACGGTTCGTTCAA+AGG | 0.463809 | 3_3:+1205164 | None:intergenic |
| TCCGTTTCAATGTGTAGGCT+TGG | 0.466175 | 3_3:+1202834 | None:intergenic |
| CTTCGATGCTCACCTCCCTC+TGG | 0.467942 | 3_3:+1206041 | None:intergenic |
| CAACACGGCGAAGAAATTTA+GGG | 0.471771 | 3_3:+1205801 | None:intergenic |
| ATTTGTGTGGCAGCAAAGTA+AGG | 0.472346 | 3_3:+1202456 | None:intergenic |
| GTAGGCTTGGAAAACATTAA+GGG | 0.474938 | 3_3:+1202847 | None:intergenic |
| GCTACACCAGAGATGGAGTA+TGG | 0.477983 | 3_3:-1203687 | Msa0437460:CDS |
| CAAGTTAAGCATGTGTGAAA+AGG | 0.479006 | 3_3:+1206495 | None:intergenic |
| ATACCGTTCAATTGTGTTCA+AGG | 0.481229 | 3_3:-1203942 | Msa0437460:CDS |
| AACAACCGAGCCAATGCAGC+AGG | 0.482906 | 3_3:+1204400 | None:intergenic |
| AGCAGACTCTTTCGATATTG+GGG | 0.485836 | 3_3:+1202778 | None:intergenic |
| CTTCTTGCTTCCCATCGATC+CGG | 0.486800 | 3_3:+1204356 | None:intergenic |
| GGGAAGCAAGAAGTTATGAT+TGG | 0.487828 | 3_3:-1204346 | Msa0437460:CDS |
| TTCAACGTGAATGCAAAGTC+AGG | 0.489074 | 3_3:-1204477 | Msa0437460:CDS |
| TAAAACATCTCTAATTTCAT+CGG | 0.489190 | 3_3:+1204600 | None:intergenic |
| TCAAGCTCCTGCTTATCATC+AGG | 0.491418 | 3_3:+1206073 | None:intergenic |
| CGATACCATGGATCTTTGCC+TGG | 0.492268 | 3_3:-1203599 | Msa0437460:CDS |
| CACGGTCGCGGTGGAACTGT+TGG | 0.493136 | 3_3:-1204208 | Msa0437460:CDS |
| AACCGTACCGTGTTGTACTC+GGG | 0.493990 | 3_3:-1205154 | Msa0437460:CDS |
| CTTCCATGAAACAATTTGGA+AGG | 0.494194 | 3_3:-1205828 | Msa0437460:CDS |
| TGCTACAATGGCAAACAAGA+TGG | 0.494492 | 3_3:-1207452 | Msa0437460:exon |
| TCCAAGCCTACACATTGAAA+CGG | 0.494703 | 3_3:-1202835 | Msa0437460:CDS |
| AATGTTACAAGTTCATCAGC+TGG | 0.496300 | 3_3:+1202743 | None:intergenic |
| TCCTCTTGATTTCATCGGTA+CGG | 0.496671 | 3_3:+1205894 | None:intergenic |
| TACAAGTGACAGTCCAAAAG+TGG | 0.497201 | 3_3:+1204792 | None:intergenic |
| CTGCTCCTGCTGCATTGGCT+CGG | 0.497705 | 3_3:-1204405 | Msa0437460:CDS |
| CTTTGCTTCAAAAGCATGGA+AGG | 0.502966 | 3_3:-1206246 | Msa0437460:intron |
| TCTGAGTCTTTGCTTCAAGT+AGG | 0.504272 | 3_3:+1202892 | None:intergenic |
| TGTCTGAGTTGATTGGCAAA+AGG | 0.504480 | 3_3:-1204651 | Msa0437460:CDS |
| AAGAAGATGATGACAAGGAA+TGG | 0.504736 | 3_3:+1207927 | None:intergenic |
| TGCAAGAGATGTACAATCAA+TGG | 0.505277 | 3_3:-1203485 | Msa0437460:CDS |
| CTTGGCCAACTTAGCTGAAG+AGG | 0.506190 | 3_3:-1206476 | Msa0437460:CDS |
| CCCCAAGATGAAATGAGAGC+TGG | 0.506531 | 3_3:-1205860 | Msa0437460:CDS |
| CCAGCTCTCATTTCATCTTG+GGG | 0.507737 | 3_3:+1205860 | None:intergenic |
| CTCATCTACATTGGTGAATG+TGG | 0.507953 | 3_3:+1205049 | None:intergenic |
| GAACCGTACCGTGTTGTACT+CGG | 0.508804 | 3_3:-1205155 | Msa0437460:CDS |
| TTCCTCAATGTCAGATTCAG+TGG | 0.510077 | 3_3:+1206387 | None:intergenic |
| CGATCTTTGCTTCAAAAGCA+TGG | 0.510937 | 3_3:-1206250 | Msa0437460:CDS |
| GATATTCTTCAAGATTTACA+TGG | 0.511585 | 3_3:-1207322 | Msa0437460:CDS |
| TGGTACATTAACCGGATCGA+TGG | 0.513122 | 3_3:-1204367 | Msa0437460:CDS |
| ACCATGAAGGGTATTGCTGC+TGG | 0.516969 | 3_3:-1202671 | Msa0437460:CDS |
| CGCGGTGGAACTGTTGGAAG+AGG | 0.518552 | 3_3:-1204202 | Msa0437460:CDS |
| TTTCATCTTCCAGTATGGCT+GGG | 0.519119 | 3_3:-1203564 | Msa0437460:CDS |
| CACACTCATTCTTACCATGA+AGG | 0.519808 | 3_3:-1202684 | Msa0437460:CDS |
| CATCACTCCTGATGATAAGC+AGG | 0.520519 | 3_3:-1206080 | Msa0437460:CDS |
| TGGAGTCCTCTTGATTTCAT+CGG | 0.521235 | 3_3:+1205889 | None:intergenic |
| AGTTGAAATGGTGTTTGCCA+AGG | 0.521758 | 3_3:-1203436 | Msa0437460:CDS |
| TAATTTCATCGGTTTGGGGT+AGG | 0.523103 | 3_3:+1204611 | None:intergenic |
| GAAGTTATTGAACAGTCGTT+CGG | 0.523330 | 3_3:-1204100 | Msa0437460:CDS |
| TCTGATTCAGGAAAAGATGC+TGG | 0.523409 | 3_3:-1204319 | Msa0437460:CDS |
| GCACACAAGGAAGTTCTTGA+AGG | 0.526801 | 3_3:-1202920 | Msa0437460:CDS |
| ATGAGTGTGTCTTCCAAACC+AGG | 0.529085 | 3_3:+1202698 | None:intergenic |
| CGAAGGAACAAGTTGAAGAA+AGG | 0.530849 | 3_3:-1206436 | Msa0437460:CDS |
| TAAGAACAAGATCAACAGTC+TGG | 0.531606 | 3_3:+1206299 | None:intergenic |
| AAATTGGATCCTACCAAGAA+TGG | 0.533268 | 3_3:-1204702 | Msa0437460:CDS |
| TTCTTCAGACCATTCTTGGT+AGG | 0.534096 | 3_3:+1204693 | None:intergenic |
| TACAGATCACTCTGTGCTTG+TGG | 0.534200 | 3_3:-1204865 | Msa0437460:CDS |
| TACTGCTCATCCTACTCAGT+CGG | 0.534850 | 3_3:-1206278 | Msa0437460:CDS |
| GAAGCCTTCTTGATTTCTTG+AGG | 0.535692 | 3_3:-1204822 | Msa0437460:CDS |
| ATGAAACCTTGTCTGTGTCC+AGG | 0.535981 | 3_3:+1203581 | None:intergenic |
| ATTTAGACAAGTTGTTCAGA+AGG | 0.538330 | 3_3:-1203529 | Msa0437460:CDS |
| CAAGCTCTCCAAAACCAGAA+TGG | 0.538343 | 3_3:-1204006 | Msa0437460:CDS |
| TGACATGAAGAAATCTCCTC+AGG | 0.539081 | 3_3:-1206344 | Msa0437460:CDS |
| CCCAAGATGAAATGAGAGCT+GGG | 0.539205 | 3_3:-1205859 | Msa0437460:CDS |
| TGATAGGCTCCTAGTTTCAA+AGG | 0.540755 | 3_3:-1203388 | Msa0437460:CDS |
| TCTGTAGGTGGCTGCACACA+AGG | 0.542762 | 3_3:-1202933 | Msa0437460:intron |
| CGAAGAAGAAGATGATGACA+AGG | 0.543560 | 3_3:+1207922 | None:intergenic |
| TCTTCAAGATTTACATGGAG+AGG | 0.543567 | 3_3:-1207317 | Msa0437460:CDS |
| GTGATCTCAAGTAGTGAAGT+GGG | 0.544636 | 3_3:+1207976 | None:intergenic |
| GGAACTGTTGGAAGAGGAGG+TGG | 0.544976 | 3_3:-1204196 | Msa0437460:CDS |
| ATGATGCTTTGTTGTTGGAT+CGG | 0.546489 | 3_3:-1207351 | Msa0437460:CDS |
| TGCAATACCAGGGTCTCCCT+TGG | 0.546742 | 3_3:+1203419 | None:intergenic |
| TCTCGTTATCTCCTAGCTCA+TGG | 0.547220 | 3_3:-1205095 | Msa0437460:CDS |
| GCCACAGATCCTTTGAAACT+AGG | 0.548768 | 3_3:+1203379 | None:intergenic |
| TTCCATGAAACAATTTGGAA+GGG | 0.549164 | 3_3:-1205827 | Msa0437460:CDS |
| ATGGCAGCTATATAAGGCTC+AGG | 0.549987 | 3_3:-1204281 | Msa0437460:CDS |
| TTGCTTATTAGCTAGAATGA+TGG | 0.550086 | 3_3:-1205557 | Msa0437460:CDS |
| AAGCATGTGTGAAAAGGACT+TGG | 0.550629 | 3_3:+1206501 | None:intergenic |
| GTGTTGTACTCGGGGAGGTG+AGG | 0.551990 | 3_3:-1205145 | Msa0437460:CDS |
| TCAATGGTAACCCTAAAGAA+AGG | 0.555161 | 3_3:+1203462 | None:intergenic |
| TGGATAAGAGGAGCATTGTA+GGG | 0.558209 | 3_3:+1205740 | None:intergenic |
| CCAACAAGTGAATATGCTCC+TGG | 0.558319 | 3_3:-1202716 | Msa0437460:CDS |
| TTCAGATTGCGCACCGCCGA+AGG | 0.559159 | 3_3:-1206453 | Msa0437460:CDS |
| CACCAGAGATGGAGTATGGT+AGG | 0.560221 | 3_3:-1203683 | Msa0437460:CDS |
| AAACACTGCGTGCGATACCA+TGG | 0.561957 | 3_3:-1203611 | Msa0437460:CDS |
| GTTGAAATGGTGTTTGCCAA+GGG | 0.562085 | 3_3:-1203435 | Msa0437460:CDS |
| GATCTGTAGCAGAGTTCAAG+AGG | 0.564012 | 3_3:+1204880 | None:intergenic |
| GAGTATGGTAGGATGAACAT+TGG | 0.564836 | 3_3:-1203672 | Msa0437460:CDS |
| AAAGGATCTGTGGCCATTTG+GGG | 0.569913 | 3_3:-1203370 | Msa0437460:CDS |
| TTGAGACAAGATAGCAAGAT+GGG | 0.570818 | 3_3:+1204168 | None:intergenic |
| CATGTAGGCTACACCAGAGA+TGG | 0.570904 | 3_3:-1203694 | Msa0437460:intron |
| GAAGTCGACCGGCAAAGAGA+AGG | 0.572412 | 3_3:-1203650 | Msa0437460:CDS |
| CAACCACCAGAAACAATTCA+CGG | 0.572783 | 3_3:-1204148 | Msa0437460:CDS |
| GATACGGCATTGAAGAACAT+AGG | 0.575177 | 3_3:-1205779 | Msa0437460:CDS |
| TCATCAAGCTTCTCAAACAA+CGG | 0.575573 | 3_3:+1204436 | None:intergenic |
| TTTCACAATAGCCATGAGCT+AGG | 0.576636 | 3_3:+1205084 | None:intergenic |
| AATATATACCTCATCTACAT+TGG | 0.576772 | 3_3:+1205040 | None:intergenic |
| TGAGTCTTTGCTTCAAGTAG+GGG | 0.576932 | 3_3:+1202894 | None:intergenic |
| TTCGCGCAGAAGAACTTCAC+AGG | 0.577091 | 3_3:-1205366 | Msa0437460:CDS |
| GTGTTTGCCAAGGGAGACCC+TGG | 0.577526 | 3_3:-1203426 | Msa0437460:CDS |
| ATACGGCATTGAAGAACATA+GGG | 0.577742 | 3_3:-1205778 | Msa0437460:CDS |
| TGTTTCTTTAGCTTTCTATG+TGG | 0.578871 | 3_3:-1205411 | Msa0437460:intron |
| TCTTCAACTTGTTCCTTCGG+CGG | 0.579027 | 3_3:+1206440 | None:intergenic |
| GACAGCCATCTGATCCATCA+AGG | 0.579385 | 3_3:+1203979 | None:intergenic |
| GATCGACGAACCGACTGAGT+AGG | 0.579937 | 3_3:+1206268 | None:intergenic |
| TGTTGTACTCGGGGAGGTGA+GGG | 0.580569 | 3_3:-1205144 | Msa0437460:CDS |
| GCAGACTCTTTCGATATTGG+GGG | 0.583884 | 3_3:+1202779 | None:intergenic |
| TTTACATGGAGAGGATCTGA+AGG | 0.584089 | 3_3:-1207308 | Msa0437460:CDS |
| TGGAGCCTACATCATTTCGA+TGG | 0.584899 | 3_3:-1204536 | Msa0437460:CDS |
| GATGAACATTGGAAGTCGAC+CGG | 0.586163 | 3_3:-1203661 | Msa0437460:CDS |
| TAGGCTCCAAAGTTGTCAGA+TGG | 0.586422 | 3_3:+1204550 | None:intergenic |
| GCGGATCCGTTTCAATGTGT+AGG | 0.586950 | 3_3:+1202829 | None:intergenic |
| GGGTTGTAATGTACGAATCA+CGG | 0.589479 | 3_3:+1202867 | None:intergenic |
| GAGTGACTCCTGAAGTGACA+AGG | 0.590847 | 3_3:-1205585 | Msa0437460:CDS |
| AATTGCATAACTCATTTGTG+TGG | 0.591035 | 3_3:+1202443 | None:intergenic |
| TGTGTCCAGGCAAAGATCCA+TGG | 0.592206 | 3_3:+1203594 | None:intergenic |
| AAAGGATCATTACCTGAAGT+AGG | 0.593460 | 3_3:+1203310 | None:intergenic |
| AGTGTTTCAATGCCTCCACT+AGG | 0.593577 | 3_3:+1203627 | None:intergenic |
| CACATTCACCAATGTAGATG+AGG | 0.599597 | 3_3:-1205048 | Msa0437460:intron |
| CTAACCATGTTCCACGGTCG+CGG | 0.600398 | 3_3:-1204220 | Msa0437460:CDS |
| GGTACATTAACCGGATCGAT+GGG | 0.600405 | 3_3:-1204366 | Msa0437460:CDS |
| ATTTCTGTGCGACTTTGATG+AGG | 0.601219 | 3_3:+1204254 | None:intergenic |
| GGTGATCGTGCAATTGCTGA+TGG | 0.602213 | 3_3:-1204844 | Msa0437460:CDS |
| GTTCCTTGAACACAATTGAA+CGG | 0.603885 | 3_3:+1203939 | None:intergenic |
| TCCTAGTTTCAAAGGATCTG+TGG | 0.604284 | 3_3:-1203380 | Msa0437460:CDS |
| TCTTTGCCTGGACACAGACA+AGG | 0.604450 | 3_3:-1203587 | Msa0437460:CDS |
| AGTTGCCATCGAAATGATGT+AGG | 0.605308 | 3_3:+1204531 | None:intergenic |
| CAACAGTTCCACCGCGACCG+TGG | 0.605980 | 3_3:+1204209 | None:intergenic |
| CGATCCAAACTACAAGGTGG+AGG | 0.607429 | 3_3:-1202807 | Msa0437460:CDS |
| TCCACCGCGACCGTGGAACA+TGG | 0.607947 | 3_3:+1204216 | None:intergenic |
| GATCCGTGAATTGTTTCTGG+TGG | 0.607988 | 3_3:+1204145 | None:intergenic |
| ACACTCATTCTTACCATGAA+GGG | 0.609673 | 3_3:-1202683 | Msa0437460:CDS |
| AGCTTGATGAAGCTCTCCAG+AGG | 0.609755 | 3_3:-1206057 | Msa0437460:CDS |
| GCGCGCCTTGATGGATCAGA+TGG | 0.612286 | 3_3:-1203984 | Msa0437460:CDS |
| GGTGGAACTGTTGGAAGAGG+AGG | 0.614237 | 3_3:-1204199 | Msa0437460:CDS |
| TCTTCAATGCCGTATCAACA+CGG | 0.614898 | 3_3:+1205786 | None:intergenic |
| GCTTGATGAAGCTCTCCAGA+GGG | 0.616659 | 3_3:-1206056 | Msa0437460:CDS |
| CTTGCCTCAAGAAATCAAGA+AGG | 0.616842 | 3_3:+1204818 | None:intergenic |
| ATTCAGGAAAAGATGCTGGA+AGG | 0.617924 | 3_3:-1204315 | Msa0437460:CDS |
| CCACCTTGTAGTTTGGATCG+CGG | 0.620237 | 3_3:+1202810 | None:intergenic |
| GTTGAGACAAGATAGCAAGA+TGG | 0.620989 | 3_3:+1204167 | None:intergenic |
| TCCCCGAGTACAACACGGTA+CGG | 0.621017 | 3_3:+1205152 | None:intergenic |
| GATCTCAAGTAGTGAAGTGG+GGG | 0.621579 | 3_3:+1207978 | None:intergenic |
| TAACTGTCTGGCACACAACA+CGG | 0.621667 | 3_3:-1207891 | Msa0437460:intron |
| AACCACTGAATCTGACATTG+AGG | 0.621933 | 3_3:-1206389 | Msa0437460:CDS |
| CGGAAATACTCAACAAAACG+TGG | 0.626014 | 3_3:+1203917 | None:intergenic |
| GAGAGAGTGAATTGCTACAA+TGG | 0.628226 | 3_3:-1207464 | Msa0437460:exon |
| TCTCTAATTTCATCGGTTTG+GGG | 0.631731 | 3_3:+1204607 | None:intergenic |
| GCTGCTGGCATGCAGAACAC+TGG | 0.632380 | 3_3:-1202656 | Msa0437460:CDS |
| CAGACTCTTTCGATATTGGG+GGG | 0.632969 | 3_3:+1202780 | None:intergenic |
| TCCGTACCGATGAAATCAAG+AGG | 0.634306 | 3_3:-1205895 | Msa0437460:CDS |
| TGATCGTCACACTGACGTGA+TGG | 0.635177 | 3_3:-1204746 | Msa0437460:CDS |
| GATGGCTGTCATTGCAACTG+AGG | 0.638513 | 3_3:-1203966 | Msa0437460:CDS |
| TGTGATCTCAAGTAGTGAAG+TGG | 0.638532 | 3_3:+1207975 | None:intergenic |
| CCGGCAAAGAGAAGGCCTAG+TGG | 0.639979 | 3_3:-1203642 | Msa0437460:CDS |
| TCAACTGCCAGCACATCAGA+CGG | 0.641429 | 3_3:+1204505 | None:intergenic |
| GACAAGATAGCAAGATGGGT+AGG | 0.642228 | 3_3:+1204172 | None:intergenic |
| TGATGAAGCTCTCCAGAGGG+AGG | 0.642322 | 3_3:-1206053 | Msa0437460:intron |
| ACCATGTTCCACGGTCGCGG+TGG | 0.646894 | 3_3:-1204217 | Msa0437460:CDS |
| GATCCGCGATCCAAACTACA+AGG | 0.647005 | 3_3:-1202813 | Msa0437460:CDS |
| ACCGTACCGTGTTGTACTCG+GGG | 0.651324 | 3_3:-1205153 | Msa0437460:CDS |
| AGTGACTCCTGAAGTGACAA+GGG | 0.652460 | 3_3:-1205584 | Msa0437460:CDS |
| TGATCTCAAGTAGTGAAGTG+GGG | 0.658150 | 3_3:+1207977 | None:intergenic |
| GCAGCTATATAAGGCTCAGG+AGG | 0.660561 | 3_3:-1204278 | Msa0437460:CDS |
| TATTGAACAGTCGTTCGGTG+AGG | 0.665155 | 3_3:-1204095 | Msa0437460:CDS |
| CATTCAGTGCTGCAATACCA+GGG | 0.670199 | 3_3:+1203409 | None:intergenic |
| ACTGCTGCTACTCTAGAACA+TGG | 0.671177 | 3_3:-1204040 | Msa0437460:CDS |
| GTTAAGCTAACCATGTTCCA+CGG | 0.677295 | 3_3:-1204226 | Msa0437460:CDS |
| GCAAAGAGAAGGCCTAGTGG+AGG | 0.689359 | 3_3:-1203639 | Msa0437460:CDS |
| TCACCTCCCCGAGTACAACA+CGG | 0.690331 | 3_3:+1205147 | None:intergenic |
| ATGGAAGTTCTGCTATGACA+CGG | 0.698167 | 3_3:+1204569 | None:intergenic |
| CCGCGATCCAAACTACAAGG+TGG | 0.710588 | 3_3:-1202810 | Msa0437460:CDS |
| TGGATGGGTGGTGATCGTGA+CGG | 0.713188 | 3_3:-1205707 | Msa0437460:intron |
| ATCTCAAGTAGTGAAGTGGG+GGG | 0.718018 | 3_3:+1207979 | None:intergenic |
| GTACCGTGTTGTACTCGGGG+AGG | 0.761838 | 3_3:-1205150 | Msa0437460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAAAAATCTTGAA+AGG | - | chr3_3:1205220-1205239 | Msa0437460:intron | 10.0% |
| !! | AAAAAAAAAAAATCTTGAAA+GGG | - | chr3_3:1205221-1205240 | Msa0437460:intron | 10.0% |
| !!! | AAAAAAAAGTACAATAACAT+AGG | + | chr3_3:1202770-1202789 | None:intergenic | 15.0% |
| !!! | ATTGAATTTTGTGTTTTTAT+AGG | - | chr3_3:1203028-1203047 | Msa0437460:intron | 15.0% |
| !!! | GTTCTTTAATTTGAATTATT+TGG | - | chr3_3:1203254-1203273 | Msa0437460:intron | 15.0% |
| !!! | TATTGATTTGTAATGTTTTA+AGG | - | chr3_3:1203405-1203424 | Msa0437460:CDS | 15.0% |
| !! | AAAGATAAAATACTAAACAT+TGG | + | chr3_3:1203503-1203522 | None:intergenic | 15.0% |
| !! | AATGTAACATAATTTCAATT+CGG | + | chr3_3:1204528-1204547 | None:intergenic | 15.0% |
| !! | TGAAAATGTTAATTACAAAA+GGG | + | chr3_3:1205052-1205071 | None:intergenic | 15.0% |
| !! | ATGAAAATGTTAATTACAAA+AGG | + | chr3_3:1205053-1205072 | None:intergenic | 15.0% |
| !! | AAGAAAATAAATCAGTAAAA+TGG | + | chr3_3:1205086-1205105 | None:intergenic | 15.0% |
| !! | ATAAAATGACATTCAAATTA+GGG | + | chr3_3:1206709-1206728 | None:intergenic | 15.0% |
| !!! | AAAGTTTGTAATTTTATTCA+AGG | - | chr3_3:1206744-1206763 | Msa0437460:intron | 15.0% |
| !! | AAAAATTGTTATAACCTAAA+AGG | + | chr3_3:1206787-1206806 | None:intergenic | 15.0% |
| !! | CAATATATTTACATAGTAAA+AGG | + | chr3_3:1207227-1207246 | None:intergenic | 15.0% |
| !!! | TATATTGAACATTTTAGTTT+TGG | - | chr3_3:1207240-1207259 | Msa0437460:intron | 15.0% |
| !!! | TCTATTTTTGTAGCATATAT+TGG | + | chr3_3:1202453-1202472 | None:intergenic | 20.0% |
| !!! | TCAATCTCTTTCATAATTTT+CGG | - | chr3_3:1202871-1202890 | Msa0437460:CDS | 20.0% |
| !! | AGAAAAAAAAACCTTTATAG+AGG | - | chr3_3:1203461-1203480 | Msa0437460:CDS | 20.0% |
| !! | GAAAAAAAAACCTTTATAGA+GGG | - | chr3_3:1203462-1203481 | Msa0437460:CDS | 20.0% |
| !! | TTTCGAATATACGTTTAATT+AGG | - | chr3_3:1203540-1203559 | Msa0437460:CDS | 20.0% |
| !! | GAATAACAGAAAATAATTGT+TGG | + | chr3_3:1203786-1203805 | None:intergenic | 20.0% |
| !! | AAATCAAACAAAATCGAAAA+AGG | + | chr3_3:1204501-1204520 | None:intergenic | 20.0% |
| !! | ACAAGAAAATCATTTCAATT+TGG | + | chr3_3:1204566-1204585 | None:intergenic | 20.0% |
| !!! | TCTCATTTTTTAAATCACAT+AGG | + | chr3_3:1204887-1204906 | None:intergenic | 20.0% |
| !! | TTAATTACAAAAGGGAAAAA+GGG | + | chr3_3:1205044-1205063 | None:intergenic | 20.0% |
| !!! | ACTATATACAGTACTTTTTA+TGG | - | chr3_3:1205509-1205528 | Msa0437460:intron | 20.0% |
| !! | TAAAACATCTCTAATTTCAT+CGG | + | chr3_3:1205919-1205938 | None:intergenic | 20.0% |
| !! | TAAAATGACATTCAAATTAG+GGG | + | chr3_3:1206708-1206727 | None:intergenic | 20.0% |
| !! | CATAAAATGACATTCAAATT+AGG | + | chr3_3:1206710-1206729 | None:intergenic | 20.0% |
| !!! | ACAAACATATTTAACCTTTT+AGG | - | chr3_3:1206770-1206789 | Msa0437460:intron | 20.0% |
| !!! | AGTTTTGGAACAATTTTTAA+CGG | - | chr3_3:1207255-1207274 | Msa0437460:intron | 20.0% |
| !! | ATGTTATAAGCACTTAATTA+AGG | - | chr3_3:1207499-1207518 | Msa0437460:intron | 20.0% |
| !!! | GAGCTAATTTTTGTATTTTT+CGG | - | chr3_3:1207558-1207577 | Msa0437460:intron | 20.0% |
| !! | ATAACATAACATGTTTTCCT+AGG | - | chr3_3:1202733-1202752 | Msa0437460:CDS | 25.0% |
| ! | CATAGGATTTATATTATCCT+AGG | + | chr3_3:1202753-1202772 | None:intergenic | 25.0% |
| !! | CAATCTCTTTCATAATTTTC+GGG | - | chr3_3:1202872-1202891 | Msa0437460:CDS | 25.0% |
| ! | TGAACACAAAACAAAATCAA+GGG | + | chr3_3:1202937-1202956 | None:intergenic | 25.0% |
| ! | ATGAACACAAAACAAAATCA+AGG | + | chr3_3:1202938-1202957 | None:intergenic | 25.0% |
| !!! | TTGATTTTGTTTTGTGTTCA+TGG | - | chr3_3:1202937-1202956 | Msa0437460:intron | 25.0% |
| ! | GATATTCTTCAAGATTTACA+TGG | - | chr3_3:1203194-1203213 | Msa0437460:intron | 25.0% |
| !!! | GATTTTGATTATTCACTGTT+TGG | - | chr3_3:1203294-1203313 | Msa0437460:intron | 25.0% |
| !!! | GGTTCTAAAAGTCAATAATA+TGG | - | chr3_3:1203315-1203334 | Msa0437460:intron | 25.0% |
| ! | CTAAAAGTCAATAATATGGT+TGG | - | chr3_3:1203319-1203338 | Msa0437460:intron | 25.0% |
| !! | TTGATTCTTTTGACAGATTT+TGG | - | chr3_3:1203367-1203386 | Msa0437460:CDS | 25.0% |
| !! | TTTGACAGATTTTGGATATT+AGG | - | chr3_3:1203375-1203394 | Msa0437460:CDS | 25.0% |
| ! | GATATGAAACATGAACTATT+AGG | - | chr3_3:1203574-1203593 | Msa0437460:CDS | 25.0% |
| !!! | ACTTTTTTTGTTCTTTTCAC+AGG | - | chr3_3:1204378-1204397 | Msa0437460:CDS | 25.0% |
| !!! | CTTTTTTTGTTCTTTTCACA+GGG | - | chr3_3:1204379-1204398 | Msa0437460:CDS | 25.0% |
| ! | AATGAGATAATATATGATGC+AGG | - | chr3_3:1204900-1204919 | Msa0437460:intron | 25.0% |
| ! | GTTAATTACAAAAGGGAAAA+AGG | + | chr3_3:1205045-1205064 | None:intergenic | 25.0% |
| ! | AATATATACCTCATCTACAT+TGG | + | chr3_3:1205479-1205498 | None:intergenic | 25.0% |
| ! | TAACTCTAGTTAGTATCTTT+CGG | + | chr3_3:1205597-1205616 | None:intergenic | 25.0% |
| ! | AATTTCCAAATGTTTGGTAA+TGG | + | chr3_3:1205799-1205818 | None:intergenic | 25.0% |
| ! | ATTACCAAACATTTGGAAAT+TGG | - | chr3_3:1205798-1205817 | Msa0437460:CDS | 25.0% |
| ! | AGTAAAGTGACATTCAAATT+AGG | - | chr3_3:1206665-1206684 | Msa0437460:intron | 25.0% |
| ! | GTAAAGTGACATTCAAATTA+GGG | - | chr3_3:1206666-1206685 | Msa0437460:intron | 25.0% |
| !!! | ATTTGAATGTCATTTTATGC+AGG | - | chr3_3:1206711-1206730 | Msa0437460:intron | 25.0% |
| !!! | TACCATTGATTTAGTTGAAA+TGG | - | chr3_3:1207068-1207087 | Msa0437460:intron | 25.0% |
| ! | ATAAGCTGAAAATAGTTTAC+AGG | + | chr3_3:1207374-1207393 | None:intergenic | 25.0% |
| ! | CAACAAATTAAGACTCTATT+TGG | + | chr3_3:1207532-1207551 | None:intergenic | 25.0% |
| !!! | CAAATAGAGTCTTAATTTGT+TGG | - | chr3_3:1207530-1207549 | Msa0437460:intron | 25.0% |
| !! | AATTTCACATCATGTTTTGT+TGG | - | chr3_3:1208030-1208049 | Msa0437460:five_prime_UTR | 25.0% |
| GACATGTTGAATATCATCAA+TGG | + | chr3_3:1202853-1202872 | None:intergenic | 30.0% | |
| CGGGATTTGATTAGAATTTA+TGG | - | chr3_3:1202891-1202910 | Msa0437460:CDS | 30.0% | |
| GAACACAAAACAAAATCAAG+GGG | + | chr3_3:1202936-1202955 | None:intergenic | 30.0% | |
| ! | TTTGTGTCATGTTTTCATGA+AGG | - | chr3_3:1203002-1203021 | Msa0437460:intron | 30.0% |
| ! | TTGTGTCATGTTTTCATGAA+GGG | - | chr3_3:1203003-1203022 | Msa0437460:intron | 30.0% |
| AAGTCAATAATATGGTTGGT+TGG | - | chr3_3:1203323-1203342 | Msa0437460:CDS | 30.0% | |
| ! | TCAGAATTTTCCCTCTATAA+AGG | + | chr3_3:1203475-1203494 | None:intergenic | 30.0% |
| ! | AAAGCATCTGAACAGAAAAT+CGG | + | chr3_3:1203630-1203649 | None:intergenic | 30.0% |
| TGATCTGTGTTATCAAATAG+CGG | - | chr3_3:1203662-1203681 | Msa0437460:CDS | 30.0% | |
| TTATTCACAATTGACAACAC+TGG | - | chr3_3:1203800-1203819 | Msa0437460:intron | 30.0% | |
| TATTCACAATTGACAACACT+GGG | - | chr3_3:1203801-1203820 | Msa0437460:intron | 30.0% | |
| ! | AGTTGAAGAAAGGTGATTTT+AGG | - | chr3_3:1204090-1204109 | Msa0437460:CDS | 30.0% |
| ! | GTTGAAGAAAGGTGATTTTA+GGG | - | chr3_3:1204091-1204110 | Msa0437460:CDS | 30.0% |
| GTTACTTCCATGAAACAATT+TGG | - | chr3_3:1204684-1204703 | Msa0437460:CDS | 30.0% | |
| TTCCATGAAACAATTTGGAA+GGG | - | chr3_3:1204689-1204708 | Msa0437460:CDS | 30.0% | |
| CAAGAAGAAAATTGGATAAG+AGG | + | chr3_3:1204791-1204810 | None:intergenic | 30.0% | |
| ! | CTCTTATCCAATTTTCTTCT+TGG | - | chr3_3:1204789-1204808 | Msa0437460:CDS | 30.0% |
| ! | TATCCAATTTTCTTCTTGGA+TGG | - | chr3_3:1204793-1204812 | Msa0437460:CDS | 30.0% |
| ! | ATCCAATTTTCTTCTTGGAT+GGG | - | chr3_3:1204794-1204813 | Msa0437460:CDS | 30.0% |
| TTGCTTATTAGCTAGAATGA+TGG | - | chr3_3:1204959-1204978 | Msa0437460:intron | 30.0% | |
| !! | TGTTTCTTTAGCTTTCTATG+TGG | - | chr3_3:1205105-1205124 | Msa0437460:CDS | 30.0% |
| ! | TTTTGCAACTTCATCTTTCT+TGG | + | chr3_3:1205180-1205199 | None:intergenic | 30.0% |
| GAAGTTGCAAAACACTATAT+AGG | - | chr3_3:1205188-1205207 | Msa0437460:intron | 30.0% | |
| !! | GAGTTAATTTGTGTAGTTTC+TGG | - | chr3_3:1205611-1205630 | Msa0437460:intron | 30.0% |
| !!! | TTTTTTCTTCAGACCATTCT+TGG | + | chr3_3:1205830-1205849 | None:intergenic | 30.0% |
| !! | ATCTCTAATTTCATCGGTTT+GGG | + | chr3_3:1205913-1205932 | None:intergenic | 30.0% |
| ATGATTGGATATTCTGATTC+AGG | - | chr3_3:1206185-1206204 | Msa0437460:intron | 30.0% | |
| ! | ATTTTTGATGTCTTACCAGA+CGG | + | chr3_3:1206622-1206641 | None:intergenic | 30.0% |
| ATTTAGACAAGTTGTTCAGA+AGG | - | chr3_3:1206987-1207006 | Msa0437460:intron | 30.0% | |
| CACCATTTCAACTAAATCAA+TGG | + | chr3_3:1207073-1207092 | None:intergenic | 30.0% | |
| ! | GAACAATTTTTAACGGTCAA+GGG | - | chr3_3:1207262-1207281 | Msa0437460:intron | 30.0% |
| !!! | AGACTGTTTTAAAGATCTGA+TGG | - | chr3_3:1207331-1207350 | Msa0437460:CDS | 30.0% |
| !! | TTGTATTTTTCGGTATCTGT+AGG | - | chr3_3:1207568-1207587 | Msa0437460:intron | 30.0% |
| AATTGCATAACTCATTTGTG+TGG | + | chr3_3:1208076-1208095 | None:intergenic | 30.0% | |
| GCAATTGATGTTATGTTTCA+AGG | - | chr3_3:1208090-1208109 | Msa0437460:five_prime_UTR | 30.0% | |
| GAATGGAAAAATGGATCAGA+AGG | + | chr3_3:1202575-1202594 | None:intergenic | 35.0% | |
| GATGACAAGGAATGGAAAAA+TGG | + | chr3_3:1202584-1202603 | None:intergenic | 35.0% | |
| AAGAAGATGATGACAAGGAA+TGG | + | chr3_3:1202592-1202611 | None:intergenic | 35.0% | |
| TTCGTTTCTAACTAACTGTC+TGG | - | chr3_3:1202613-1202632 | Msa0437460:three_prime_UTR | 35.0% | |
| CACGTGTACATAAACATACT+AGG | + | chr3_3:1202826-1202845 | None:intergenic | 35.0% | |
| GGCAAACAAGATGGAAAAAA+TGG | - | chr3_3:1203073-1203092 | Msa0437460:intron | 35.0% | |
| ! | TGAGTATGATGCTTTGTTGT+TGG | - | chr3_3:1203160-1203179 | Msa0437460:intron | 35.0% |
| !! | ATGATGCTTTGTTGTTGGAT+CGG | - | chr3_3:1203165-1203184 | Msa0437460:intron | 35.0% |
| TCTTCAAGATTTACATGGAG+AGG | - | chr3_3:1203199-1203218 | Msa0437460:intron | 35.0% | |
| !! | GGTTGGTGAGAAAAAAAGAT+TGG | - | chr3_3:1203340-1203359 | Msa0437460:CDS | 35.0% |
| CACTAAATCTACAGTCACTA+AGG | + | chr3_3:1203600-1203619 | None:intergenic | 35.0% | |
| GATGCTTTGACATAATGAGA+CGG | - | chr3_3:1203827-1203846 | Msa0437460:intron | 35.0% | |
| !! | GACGGAATTTGTTTTCTTCA+CGG | - | chr3_3:1203845-1203864 | Msa0437460:intron | 35.0% |
| TTCTTCACGGTATGATTGAA+AGG | - | chr3_3:1203858-1203877 | Msa0437460:intron | 35.0% | |
| CAAGTTAAGCATGTGTGAAA+AGG | + | chr3_3:1204024-1204043 | None:intergenic | 35.0% | |
| ! | CTTTTCACACATGCTTAACT+TGG | - | chr3_3:1204022-1204041 | Msa0437460:CDS | 35.0% |
| ! | CTTTCTTCAACTTGTTCCTT+CGG | + | chr3_3:1204082-1204101 | None:intergenic | 35.0% |
| AATGCATCAAAAACTTCCTG+AGG | + | chr3_3:1204191-1204210 | None:intergenic | 35.0% | |
| TAAGAACAAGATCAACAGTC+TGG | + | chr3_3:1204220-1204239 | None:intergenic | 35.0% | |
| ! | TTTGTTCTTTTCACAGGGTA+AGG | - | chr3_3:1204384-1204403 | Msa0437460:CDS | 35.0% |
| CTTCCATGAAACAATTTGGA+AGG | - | chr3_3:1204688-1204707 | Msa0437460:CDS | 35.0% | |
| ! | ATACGGCATTGAAGAACATA+GGG | - | chr3_3:1204738-1204757 | Msa0437460:CDS | 35.0% |
| ! | TTTTCCAAAACTCTGCATCA+TGG | + | chr3_3:1205327-1205346 | None:intergenic | 35.0% |
| CACTTGTAAGGCTTGATATA+AGG | - | chr3_3:1205739-1205758 | Msa0437460:CDS | 35.0% | |
| GGATCCAATTTCCAAATGTT+TGG | + | chr3_3:1205805-1205824 | None:intergenic | 35.0% | |
| AAATTGGATCCTACCAAGAA+TGG | - | chr3_3:1205814-1205833 | Msa0437460:CDS | 35.0% | |
| ATGGTCTGAAGAAAAAAGAC+AGG | - | chr3_3:1205833-1205852 | Msa0437460:CDS | 35.0% | |
| CTGAAGAAAAAAGACAGGAA+TGG | - | chr3_3:1205838-1205857 | Msa0437460:CDS | 35.0% | |
| !! | TCTCTAATTTCATCGGTTTG+GGG | + | chr3_3:1205912-1205931 | None:intergenic | 35.0% |
| ! | CATCTCTAATTTCATCGGTT+TGG | + | chr3_3:1205914-1205933 | None:intergenic | 35.0% |
| TCATCAAGCTTCTCAAACAA+CGG | + | chr3_3:1206083-1206102 | None:intergenic | 35.0% | |
| CCATAAACTGGTACATTAAC+CGG | - | chr3_3:1206141-1206160 | Msa0437460:intron | 35.0% | |
| ATCAAAGTCGCACAGAAATT+TGG | - | chr3_3:1206266-1206285 | Msa0437460:CDS | 35.0% | |
| TTGAGACAAGATAGCAAGAT+GGG | + | chr3_3:1206351-1206370 | None:intergenic | 35.0% | |
| GAAGTTATTGAACAGTCGTT+CGG | - | chr3_3:1206416-1206435 | Msa0437460:CDS | 35.0% | |
| ATACCGTTCAATTGTGTTCA+AGG | - | chr3_3:1206574-1206593 | Msa0437460:CDS | 35.0% | |
| GTTCCTTGAACACAATTGAA+CGG | + | chr3_3:1206580-1206599 | None:intergenic | 35.0% | |
| ! | TTTTGTTGAGTATTTCCGTC+TGG | - | chr3_3:1206604-1206623 | Msa0437460:CDS | 35.0% |
| GTCAACTTTATGTGTCATGT+AGG | - | chr3_3:1206807-1206826 | Msa0437460:intron | 35.0% | |
| TGCAAGAGATGTACAATCAA+TGG | - | chr3_3:1207031-1207050 | Msa0437460:intron | 35.0% | |
| ACAATCAATGGCCTTTCTTT+AGG | - | chr3_3:1207043-1207062 | Msa0437460:intron | 35.0% | |
| CAATCAATGGCCTTTCTTTA+GGG | - | chr3_3:1207044-1207063 | Msa0437460:intron | 35.0% | |
| TCAATGGTAACCCTAAAGAA+AGG | + | chr3_3:1207057-1207076 | None:intergenic | 35.0% | |
| AACTAAGAAACTCCTACTTC+AGG | - | chr3_3:1207194-1207213 | Msa0437460:intron | 35.0% | |
| AAAGGATCATTACCTGAAGT+AGG | + | chr3_3:1207209-1207228 | None:intergenic | 35.0% | |
| ! | GGAACAATTTTTAACGGTCA+AGG | - | chr3_3:1207261-1207280 | Msa0437460:intron | 35.0% |
| ACCTATCTGAACTTATCTAC+TGG | - | chr3_3:1207298-1207317 | Msa0437460:intron | 35.0% | |
| GATCTGATGGAAATAGCTTA+TGG | - | chr3_3:1207344-1207363 | Msa0437460:CDS | 35.0% | |
| ! | AAGTTATTCTGGAGAGCTTA+CGG | + | chr3_3:1207399-1207418 | None:intergenic | 35.0% |
| !! | TATTTTTCGGTATCTGTAGG+TGG | - | chr3_3:1207571-1207590 | Msa0437460:intron | 35.0% |
| GTAGGCTTGGAAAACATTAA+GGG | + | chr3_3:1207672-1207691 | None:intergenic | 35.0% | |
| TGTAGGCTTGGAAAACATTA+AGG | + | chr3_3:1207673-1207692 | None:intergenic | 35.0% | |
| AATGTTACAAGTTCATCAGC+TGG | + | chr3_3:1207776-1207795 | None:intergenic | 35.0% | |
| ACACTCATTCTTACCATGAA+GGG | - | chr3_3:1207833-1207852 | Msa0437460:intron | 35.0% | |
| !! | GCAGAACACTGGTTAAATTT+TGG | - | chr3_3:1207871-1207890 | Msa0437460:intron | 35.0% |
| TGATCTCAAGTAGTGAAGTG+GGG | + | chr3_3:1202542-1202561 | None:intergenic | 40.0% | |
| GTGATCTCAAGTAGTGAAGT+GGG | + | chr3_3:1202543-1202562 | None:intergenic | 40.0% | |
| TGTGATCTCAAGTAGTGAAG+TGG | + | chr3_3:1202544-1202563 | None:intergenic | 40.0% | |
| CGAAGAAGAAGATGATGACA+AGG | + | chr3_3:1202597-1202616 | None:intergenic | 40.0% | |
| GAGAGAGTGAATTGCTACAA+TGG | - | chr3_3:1203052-1203071 | Msa0437460:intron | 40.0% | |
| TGCTACAATGGCAAACAAGA+TGG | - | chr3_3:1203064-1203083 | Msa0437460:intron | 40.0% | |
| TGATGCACAGCTTAGACAAT+TGG | - | chr3_3:1203103-1203122 | Msa0437460:intron | 40.0% | |
| !! | TCATCTTCACTCACTTTTGC+AGG | + | chr3_3:1203131-1203150 | None:intergenic | 40.0% |
| TTTACATGGAGAGGATCTGA+AGG | - | chr3_3:1203208-1203227 | Msa0437460:intron | 40.0% | |
| AGGCTAAAATGCTGTTATGC+AGG | - | chr3_3:1203878-1203897 | Msa0437460:intron | 40.0% | |
| ! | CCAAGCTCTTCAAGTTTCTT+AGG | + | chr3_3:1203951-1203970 | None:intergenic | 40.0% |
| CCTAAGAAACTTGAAGAGCT+TGG | - | chr3_3:1203948-1203967 | Msa0437460:CDS | 40.0% | |
| TTGATCACAAGTTTCGATGC+AGG | - | chr3_3:1203975-1203994 | Msa0437460:CDS | 40.0% | |
| AAGCATGTGTGAAAAGGACT+TGG | + | chr3_3:1204018-1204037 | None:intergenic | 40.0% | |
| ! | CGAAGGAACAAGTTGAAGAA+AGG | - | chr3_3:1204080-1204099 | Msa0437460:CDS | 40.0% |
| AACCACTGAATCTGACATTG+AGG | - | chr3_3:1204127-1204146 | Msa0437460:CDS | 40.0% | |
| TTCCTCAATGTCAGATTCAG+TGG | + | chr3_3:1204132-1204151 | None:intergenic | 40.0% | |
| TGACATGAAGAAATCTCCTC+AGG | - | chr3_3:1204172-1204191 | Msa0437460:CDS | 40.0% | |
| CGATCTTTGCTTCAAAAGCA+TGG | - | chr3_3:1204266-1204285 | Msa0437460:CDS | 40.0% | |
| ! | CTTTGCTTCAAAAGCATGGA+AGG | - | chr3_3:1204270-1204289 | Msa0437460:CDS | 40.0% |
| TCCTCTTGATTTCATCGGTA+CGG | + | chr3_3:1204625-1204644 | None:intergenic | 40.0% | |
| TGGAGTCCTCTTGATTTCAT+CGG | + | chr3_3:1204630-1204649 | None:intergenic | 40.0% | |
| CACCCTTCCAAATTGTTTCA+TGG | + | chr3_3:1204694-1204713 | None:intergenic | 40.0% | |
| CAACACGGCGAAGAAATTTA+GGG | + | chr3_3:1204718-1204737 | None:intergenic | 40.0% | |
| TCAACACGGCGAAGAAATTT+AGG | + | chr3_3:1204719-1204738 | None:intergenic | 40.0% | |
| ! | ATTTCTTCGCCGTGTTGATA+CGG | - | chr3_3:1204721-1204740 | Msa0437460:CDS | 40.0% |
| TCTTCAATGCCGTATCAACA+CGG | + | chr3_3:1204733-1204752 | None:intergenic | 40.0% | |
| ! | GATACGGCATTGAAGAACAT+AGG | - | chr3_3:1204737-1204756 | Msa0437460:CDS | 40.0% |
| !! | TGGATAAGAGGAGCATTGTA+GGG | + | chr3_3:1204779-1204798 | None:intergenic | 40.0% |
| !! | TTGGATAAGAGGAGCATTGT+AGG | + | chr3_3:1204780-1204799 | None:intergenic | 40.0% |
| CACCCATCCAAGAAGAAAAT+TGG | + | chr3_3:1204799-1204818 | None:intergenic | 40.0% | |
| ! | CAATTTTCTTCTTGGATGGG+TGG | - | chr3_3:1204797-1204816 | Msa0437460:CDS | 40.0% |
| ! | TCTTCCATGATGCAGAGTTT+TGG | - | chr3_3:1205320-1205339 | Msa0437460:intron | 40.0% |
| TTTCACAATAGCCATGAGCT+AGG | + | chr3_3:1205435-1205454 | None:intergenic | 40.0% | |
| CTCATCTACATTGGTGAATG+TGG | + | chr3_3:1205470-1205489 | None:intergenic | 40.0% | |
| CACATTCACCAATGTAGATG+AGG | - | chr3_3:1205468-1205487 | Msa0437460:intron | 40.0% | |
| GAAGCCTTCTTGATTTCTTG+AGG | - | chr3_3:1205694-1205713 | Msa0437460:intron | 40.0% | |
| CTTGCCTCAAGAAATCAAGA+AGG | + | chr3_3:1205701-1205720 | None:intergenic | 40.0% | |
| ! | TTGAGGCAAGTTTCCACTTT+TGG | - | chr3_3:1205711-1205730 | Msa0437460:CDS | 40.0% |
| TACAAGTGACAGTCCAAAAG+TGG | + | chr3_3:1205727-1205746 | None:intergenic | 40.0% | |
| !! | CTTTTGGACTGTCACTTGTA+AGG | - | chr3_3:1205727-1205746 | Msa0437460:CDS | 40.0% |
| GGATGCCATTACCAAACATT+TGG | - | chr3_3:1205791-1205810 | Msa0437460:CDS | 40.0% | |
| TTCTTCAGACCATTCTTGGT+AGG | + | chr3_3:1205826-1205845 | None:intergenic | 40.0% | |
| !!! | TGGCTTTTGTCTGAGTTGAT+TGG | - | chr3_3:1205858-1205877 | Msa0437460:CDS | 40.0% |
| !! | TGTCTGAGTTGATTGGCAAA+AGG | - | chr3_3:1205865-1205884 | Msa0437460:CDS | 40.0% |
| !!! | ATTGGCAAAAGGCCACTTTT+TGG | - | chr3_3:1205876-1205895 | Msa0437460:CDS | 40.0% |
| !! | TAATTTCATCGGTTTGGGGT+AGG | + | chr3_3:1205908-1205927 | None:intergenic | 40.0% |
| ATGGAAGTTCTGCTATGACA+CGG | + | chr3_3:1205950-1205969 | None:intergenic | 40.0% | |
| GAACTTCCATCTGACAACTT+TGG | - | chr3_3:1205960-1205979 | Msa0437460:intron | 40.0% | |
| AGTTGCCATCGAAATGATGT+AGG | + | chr3_3:1205988-1206007 | None:intergenic | 40.0% | |
| TTCAACGTGAATGCAAAGTC+AGG | - | chr3_3:1206039-1206058 | Msa0437460:intron | 40.0% | |
| AACAACGGAACGACTCTTAA+TGG | + | chr3_3:1206068-1206087 | None:intergenic | 40.0% | |
| CCGGTTAATGTACCAGTTTA+TGG | + | chr3_3:1206144-1206163 | None:intergenic | 40.0% | |
| GGGAAGCAAGAAGTTATGAT+TGG | - | chr3_3:1206170-1206189 | Msa0437460:intron | 40.0% | |
| TCTGATTCAGGAAAAGATGC+TGG | - | chr3_3:1206197-1206216 | Msa0437460:intron | 40.0% | |
| ATTCAGGAAAAGATGCTGGA+AGG | - | chr3_3:1206201-1206220 | Msa0437460:intron | 40.0% | |
| ATTTCTGTGCGACTTTGATG+AGG | + | chr3_3:1206265-1206284 | None:intergenic | 40.0% | |
| GTTAAGCTAACCATGTTCCA+CGG | - | chr3_3:1206290-1206309 | Msa0437460:CDS | 40.0% | |
| GTTGAGACAAGATAGCAAGA+TGG | + | chr3_3:1206352-1206371 | None:intergenic | 40.0% | |
| CAACCACCAGAAACAATTCA+CGG | - | chr3_3:1206368-1206387 | Msa0437460:CDS | 40.0% | |
| AGAGATCCGTGAATTGTTTC+TGG | + | chr3_3:1206377-1206396 | None:intergenic | 40.0% | |
| !!! | ATTCTGGTTTTGGAGAGCTT+GGG | + | chr3_3:1206511-1206530 | None:intergenic | 40.0% |
| CGGAAATACTCAACAAAACG+TGG | + | chr3_3:1206602-1206621 | None:intergenic | 40.0% | |
| GAGTATGGTAGGATGAACAT+TGG | - | chr3_3:1206844-1206863 | Msa0437460:intron | 40.0% | |
| CAAGGTTTCATCTTCCAGTA+TGG | - | chr3_3:1206947-1206966 | Msa0437460:intron | 40.0% | |
| TTTCATCTTCCAGTATGGCT+GGG | - | chr3_3:1206952-1206971 | Msa0437460:intron | 40.0% | |
| TGTACATCTCTTGCAGCATA+TGG | + | chr3_3:1207026-1207045 | None:intergenic | 40.0% | |
| AGTTGAAATGGTGTTTGCCA+AGG | - | chr3_3:1207080-1207099 | Msa0437460:intron | 40.0% | |
| GTTGAAATGGTGTTTGCCAA+GGG | - | chr3_3:1207081-1207100 | Msa0437460:intron | 40.0% | |
| ! | GTATTGCAGCACTGAATGAT+AGG | - | chr3_3:1207112-1207131 | Msa0437460:intron | 40.0% |
| TGATAGGCTCCTAGTTTCAA+AGG | - | chr3_3:1207128-1207147 | Msa0437460:intron | 40.0% | |
| TCCTAGTTTCAAAGGATCTG+TGG | - | chr3_3:1207136-1207155 | Msa0437460:intron | 40.0% | |
| CTTCTCAATTGTTCCCCAAA+TGG | + | chr3_3:1207162-1207181 | None:intergenic | 40.0% | |
| ! | TTAACGGTCAAGGGCATATT+TGG | - | chr3_3:1207271-1207290 | Msa0437460:intron | 40.0% |
| GCCAGTAGATAAGTTCAGAT+AGG | + | chr3_3:1207302-1207321 | None:intergenic | 40.0% | |
| TGAGTCTTTGCTTCAAGTAG+GGG | + | chr3_3:1207625-1207644 | None:intergenic | 40.0% | |
| CTGAGTCTTTGCTTCAAGTA+GGG | + | chr3_3:1207626-1207645 | None:intergenic | 40.0% | |
| TCTGAGTCTTTGCTTCAAGT+AGG | + | chr3_3:1207627-1207646 | None:intergenic | 40.0% | |
| GGGTTGTAATGTACGAATCA+CGG | + | chr3_3:1207652-1207671 | None:intergenic | 40.0% | |
| TCCAAGCCTACACATTGAAA+CGG | - | chr3_3:1207681-1207700 | Msa0437460:intron | 40.0% | |
| AGCAGACTCTTTCGATATTG+GGG | + | chr3_3:1207741-1207760 | None:intergenic | 40.0% | |
| CAGCAGACTCTTTCGATATT+GGG | + | chr3_3:1207742-1207761 | None:intergenic | 40.0% | |
| TCAGCAGACTCTTTCGATAT+TGG | + | chr3_3:1207743-1207762 | None:intergenic | 40.0% | |
| AAGTGAATATGCTCCTGGTT+TGG | - | chr3_3:1207805-1207824 | Msa0437460:intron | 40.0% | |
| CACACTCATTCTTACCATGA+AGG | - | chr3_3:1207832-1207851 | Msa0437460:intron | 40.0% | |
| ATTTGTGTGGCAGCAAAGTA+AGG | + | chr3_3:1208063-1208082 | None:intergenic | 40.0% | |
| ATCTCAAGTAGTGAAGTGGG+GGG | + | chr3_3:1202540-1202559 | None:intergenic | 45.0% | |
| GATCTCAAGTAGTGAAGTGG+GGG | + | chr3_3:1202541-1202560 | None:intergenic | 45.0% | |
| TAACTGTCTGGCACACAACA+CGG | - | chr3_3:1202625-1202644 | Msa0437460:three_prime_UTR | 45.0% | |
| CTGAACCTCTTCAGCTAAGT+TGG | + | chr3_3:1204048-1204067 | None:intergenic | 45.0% | |
| ! | TCTTCAACTTGTTCCTTCGG+CGG | + | chr3_3:1204079-1204098 | None:intergenic | 45.0% |
| TACTGCTCATCCTACTCAGT+CGG | - | chr3_3:1204238-1204257 | Msa0437460:CDS | 45.0% | |
| CATCACTCCTGATGATAAGC+AGG | - | chr3_3:1204436-1204455 | Msa0437460:CDS | 45.0% | |
| TCAAGCTCCTGCTTATCATC+AGG | + | chr3_3:1204446-1204465 | None:intergenic | 45.0% | |
| ! | TCCGTACCGATGAAATCAAG+AGG | - | chr3_3:1204621-1204640 | Msa0437460:CDS | 45.0% |
| ATTTCATCTTGGGGAGTTGG+TGG | + | chr3_3:1204650-1204669 | None:intergenic | 45.0% | |
| CTCATTTCATCTTGGGGAGT+TGG | + | chr3_3:1204653-1204672 | None:intergenic | 45.0% | |
| CCAGCTCTCATTTCATCTTG+GGG | + | chr3_3:1204659-1204678 | None:intergenic | 45.0% | |
| CCCAGCTCTCATTTCATCTT+GGG | + | chr3_3:1204660-1204679 | None:intergenic | 45.0% | |
| CCCAAGATGAAATGAGAGCT+GGG | - | chr3_3:1204657-1204676 | Msa0437460:CDS | 45.0% | |
| TCCCAGCTCTCATTTCATCT+TGG | + | chr3_3:1204661-1204680 | None:intergenic | 45.0% | |
| AGTGACTCCTGAAGTGACAA+GGG | - | chr3_3:1204932-1204951 | Msa0437460:intron | 45.0% | |
| ! | CAAACATCCCTTGTCACTTC+AGG | + | chr3_3:1204942-1204961 | None:intergenic | 45.0% |
| TCTCGTTATCTCCTAGCTCA+TGG | - | chr3_3:1205421-1205440 | Msa0437460:intron | 45.0% | |
| TTGGTGAATGTGGCTTCTTC+AGG | + | chr3_3:1205460-1205479 | None:intergenic | 45.0% | |
| GATCTGTAGCAGAGTTCAAG+AGG | + | chr3_3:1205639-1205658 | None:intergenic | 45.0% | |
| TACAGATCACTCTGTGCTTG+TGG | - | chr3_3:1205651-1205670 | Msa0437460:intron | 45.0% | |
| TAGGCTCCAAAGTTGTCAGA+TGG | + | chr3_3:1205969-1205988 | None:intergenic | 45.0% | |
| TGGAGCCTACATCATTTCGA+TGG | - | chr3_3:1205980-1205999 | Msa0437460:intron | 45.0% | |
| CTCGGTTGTTCTCCATAAAC+TGG | - | chr3_3:1206129-1206148 | Msa0437460:intron | 45.0% | |
| TGGTACATTAACCGGATCGA+TGG | - | chr3_3:1206149-1206168 | Msa0437460:intron | 45.0% | |
| GGTACATTAACCGGATCGAT+GGG | - | chr3_3:1206150-1206169 | Msa0437460:intron | 45.0% | |
| TGCAGCATGGCAGCTATATA+AGG | - | chr3_3:1206229-1206248 | Msa0437460:intron | 45.0% | |
| ATGGCAGCTATATAAGGCTC+AGG | - | chr3_3:1206235-1206254 | Msa0437460:intron | 45.0% | |
| GACAAGATAGCAAGATGGGT+AGG | + | chr3_3:1206347-1206366 | None:intergenic | 45.0% | |
| !! | GATCCGTGAATTGTTTCTGG+TGG | + | chr3_3:1206374-1206393 | None:intergenic | 45.0% |
| TCTCTTCGTGTGACAGTTCA+AGG | - | chr3_3:1206392-1206411 | Msa0437460:CDS | 45.0% | |
| ! | TATTGAACAGTCGTTCGGTG+AGG | - | chr3_3:1206421-1206440 | Msa0437460:CDS | 45.0% |
| GTGAGGAACACTTGTGCTTT+AGG | - | chr3_3:1206438-1206457 | Msa0437460:CDS | 45.0% | |
| !! | ACTGCTGCTACTCTAGAACA+TGG | - | chr3_3:1206476-1206495 | Msa0437460:CDS | 45.0% |
| !!! | TTCTGGTTTTGGAGAGCTTG+GGG | + | chr3_3:1206510-1206529 | None:intergenic | 45.0% |
| !!! | CATTCTGGTTTTGGAGAGCT+TGG | + | chr3_3:1206512-1206531 | None:intergenic | 45.0% |
| CAAGCTCTCCAAAACCAGAA+TGG | - | chr3_3:1206510-1206529 | Msa0437460:CDS | 45.0% | |
| ATCCTACCATACTCCATCTC+TGG | + | chr3_3:1206838-1206857 | None:intergenic | 45.0% | |
| GATGAACATTGGAAGTCGAC+CGG | - | chr3_3:1206855-1206874 | Msa0437460:intron | 45.0% | |
| AGTGTTTCAATGCCTCCACT+AGG | + | chr3_3:1206892-1206911 | None:intergenic | 45.0% | |
| ATGAAACCTTGTCTGTGTCC+AGG | + | chr3_3:1206938-1206957 | None:intergenic | 45.0% | |
| GTTTCATCTTCCAGTATGGC+TGG | - | chr3_3:1206951-1206970 | Msa0437460:intron | 45.0% | |
| CATTCAGTGCTGCAATACCA+GGG | + | chr3_3:1207110-1207129 | None:intergenic | 45.0% | |
| TCATTCAGTGCTGCAATACC+AGG | + | chr3_3:1207111-1207130 | None:intergenic | 45.0% | |
| !! | GCCACAGATCCTTTGAAACT+AGG | + | chr3_3:1207140-1207159 | None:intergenic | 45.0% |
| TCAAAGGATCTGTGGCCATT+TGG | - | chr3_3:1207144-1207163 | Msa0437460:intron | 45.0% | |
| CAAAGGATCTGTGGCCATTT+GGG | - | chr3_3:1207145-1207164 | Msa0437460:intron | 45.0% | |
| AAAGGATCTGTGGCCATTTG+GGG | - | chr3_3:1207146-1207165 | Msa0437460:intron | 45.0% | |
| GCACACAAGGAAGTTCTTGA+AGG | - | chr3_3:1207596-1207615 | Msa0437460:intron | 45.0% | |
| TCCGTTTCAATGTGTAGGCT+TGG | + | chr3_3:1207685-1207704 | None:intergenic | 45.0% | |
| CAGACTCTTTCGATATTGGG+GGG | + | chr3_3:1207739-1207758 | None:intergenic | 45.0% | |
| GCAGACTCTTTCGATATTGG+GGG | + | chr3_3:1207740-1207759 | None:intergenic | 45.0% | |
| ! | CCAGGAGCATATTCACTTGT+TGG | + | chr3_3:1207803-1207822 | None:intergenic | 45.0% |
| CCAACAAGTGAATATGCTCC+TGG | - | chr3_3:1207800-1207819 | Msa0437460:intron | 45.0% | |
| ATGAGTGTGTCTTCCAAACC+AGG | + | chr3_3:1207821-1207840 | None:intergenic | 45.0% | |
| !! | AAAAAAAAAAAAAAAAACAT+AGG | + | chr3_3:1202694-1202713 | None:intergenic | 5.0% |
| !! | AAAAATTATAAATTAAACAA+TGG | + | chr3_3:1202973-1202992 | None:intergenic | 5.0% |
| !!! | TTTTAAAATTAAAATATTGA+AGG | + | chr3_3:1204325-1204344 | None:intergenic | 5.0% |
| CTTGGCCAACTTAGCTGAAG+AGG | - | chr3_3:1204040-1204059 | Msa0437460:CDS | 50.0% | |
| AGCTTGATGAAGCTCTCCAG+AGG | - | chr3_3:1204459-1204478 | Msa0437460:CDS | 50.0% | |
| GCTTGATGAAGCTCTCCAGA+GGG | - | chr3_3:1204460-1204479 | Msa0437460:CDS | 50.0% | |
| CCCCAAGATGAAATGAGAGC+TGG | - | chr3_3:1204656-1204675 | Msa0437460:CDS | 50.0% | |
| GTCACTTCAGGAGTCACTCT+TGG | + | chr3_3:1204930-1204949 | None:intergenic | 50.0% | |
| GAGTGACTCCTGAAGTGACA+AGG | - | chr3_3:1204931-1204950 | Msa0437460:intron | 50.0% | |
| TTCGCGCAGAAGAACTTCAC+AGG | - | chr3_3:1205150-1205169 | Msa0437460:CDS | 50.0% | |
| ACACGGTACGGTTCGTTCAA+AGG | + | chr3_3:1205355-1205374 | None:intergenic | 50.0% | |
| GAACCGTACCGTGTTGTACT+CGG | - | chr3_3:1205361-1205380 | Msa0437460:CDS | 50.0% | |
| AACCGTACCGTGTTGTACTC+GGG | - | chr3_3:1205362-1205381 | Msa0437460:CDS | 50.0% | |
| GGTGATCGTGCAATTGCTGA+TGG | - | chr3_3:1205672-1205691 | Msa0437460:intron | 50.0% | |
| TGATCGTCACACTGACGTGA+TGG | - | chr3_3:1205770-1205789 | Msa0437460:CDS | 50.0% | |
| GGTAGGTCAGGTCCAAAAAG+TGG | + | chr3_3:1205891-1205910 | None:intergenic | 50.0% | |
| TCAACTGCCAGCACATCAGA+CGG | + | chr3_3:1206014-1206033 | None:intergenic | 50.0% | |
| CTTCTTGCTTCCCATCGATC+CGG | + | chr3_3:1206163-1206182 | None:intergenic | 50.0% | |
| ! | CTGGAAGGTTTTCTGCAGCA+TGG | - | chr3_3:1206216-1206235 | Msa0437460:intron | 50.0% |
| GCAGCTATATAAGGCTCAGG+AGG | - | chr3_3:1206238-1206257 | Msa0437460:intron | 50.0% | |
| !!! | TCTGGTTTTGGAGAGCTTGG+GGG | + | chr3_3:1206509-1206528 | None:intergenic | 50.0% |
| GACAGCCATCTGATCCATCA+AGG | + | chr3_3:1206540-1206559 | None:intergenic | 50.0% | |
| GATGGCTGTCATTGCAACTG+AGG | - | chr3_3:1206550-1206569 | Msa0437460:CDS | 50.0% | |
| CATGTAGGCTACACCAGAGA+TGG | - | chr3_3:1206822-1206841 | Msa0437460:intron | 50.0% | |
| GCTACACCAGAGATGGAGTA+TGG | - | chr3_3:1206829-1206848 | Msa0437460:intron | 50.0% | |
| CACCAGAGATGGAGTATGGT+AGG | - | chr3_3:1206833-1206852 | Msa0437460:intron | 50.0% | |
| AAACACTGCGTGCGATACCA+TGG | - | chr3_3:1206905-1206924 | Msa0437460:intron | 50.0% | |
| CGATACCATGGATCTTTGCC+TGG | - | chr3_3:1206917-1206936 | Msa0437460:intron | 50.0% | |
| TGTGTCCAGGCAAAGATCCA+TGG | + | chr3_3:1206925-1206944 | None:intergenic | 50.0% | |
| TCTTTGCCTGGACACAGACA+AGG | - | chr3_3:1206929-1206948 | Msa0437460:intron | 50.0% | |
| GCGGATCCGTTTCAATGTGT+AGG | + | chr3_3:1207690-1207709 | None:intergenic | 50.0% | |
| GATCCGCGATCCAAACTACA+AGG | - | chr3_3:1207703-1207722 | Msa0437460:intron | 50.0% | |
| CCACCTTGTAGTTTGGATCG+CGG | + | chr3_3:1207709-1207728 | None:intergenic | 50.0% | |
| CGATCCAAACTACAAGGTGG+AGG | - | chr3_3:1207709-1207728 | Msa0437460:intron | 50.0% | |
| !! | ACCATGAAGGGTATTGCTGC+TGG | - | chr3_3:1207845-1207864 | Msa0437460:intron | 50.0% |
| GATCGACGAACCGACTGAGT+AGG | + | chr3_3:1204251-1204270 | None:intergenic | 55.0% | |
| TGATGAAGCTCTCCAGAGGG+AGG | - | chr3_3:1204463-1204482 | Msa0437460:CDS | 55.0% | |
| TGGATGGGTGGTGATCGTGA+CGG | - | chr3_3:1204809-1204828 | Msa0437460:CDS | 55.0% | |
| ACCGTACCGTGTTGTACTCG+GGG | - | chr3_3:1205363-1205382 | Msa0437460:CDS | 55.0% | |
| TCCCCGAGTACAACACGGTA+CGG | + | chr3_3:1205367-1205386 | None:intergenic | 55.0% | |
| TCACCTCCCCGAGTACAACA+CGG | + | chr3_3:1205372-1205391 | None:intergenic | 55.0% | |
| TGTTGTACTCGGGGAGGTGA+GGG | - | chr3_3:1205372-1205391 | Msa0437460:CDS | 55.0% | |
| !! | TCATCGGTTTGGGGTAGGTC+AGG | + | chr3_3:1205903-1205922 | None:intergenic | 55.0% |
| AACTGCACCGTCTGATGTGC+TGG | - | chr3_3:1206004-1206023 | Msa0437460:intron | 55.0% | |
| TGAGTCTGCTCCTGCTGCAT+TGG | - | chr3_3:1206106-1206125 | Msa0437460:CDS | 55.0% | |
| AACAACCGAGCCAATGCAGC+AGG | + | chr3_3:1206119-1206138 | None:intergenic | 55.0% | |
| CTAACCATGTTCCACGGTCG+CGG | - | chr3_3:1206296-1206315 | Msa0437460:CDS | 55.0% | |
| GGTGGAACTGTTGGAAGAGG+AGG | - | chr3_3:1206317-1206336 | Msa0437460:CDS | 55.0% | |
| GGAACTGTTGGAAGAGGAGG+TGG | - | chr3_3:1206320-1206339 | Msa0437460:CDS | 55.0% | |
| !!! | AAGGCGCGCCATTCTGGTTT+TGG | + | chr3_3:1206521-1206540 | None:intergenic | 55.0% |
| GAAGTCGACCGGCAAAGAGA+AGG | - | chr3_3:1206866-1206885 | Msa0437460:intron | 55.0% | |
| CCACTAGGCCTTCTCTTTGC+CGG | + | chr3_3:1206877-1206896 | None:intergenic | 55.0% | |
| GCAAAGAGAAGGCCTAGTGG+AGG | - | chr3_3:1206877-1206896 | Msa0437460:intron | 55.0% | |
| CTTCCAGTATGGCTGGGCTT+TGG | - | chr3_3:1206958-1206977 | Msa0437460:intron | 55.0% | |
| TGCAATACCAGGGTCTCCCT+TGG | + | chr3_3:1207100-1207119 | None:intergenic | 55.0% | |
| TCTGTAGGTGGCTGCACACA+AGG | - | chr3_3:1207583-1207602 | Msa0437460:intron | 55.0% | |
| CCGCGATCCAAACTACAAGG+TGG | - | chr3_3:1207706-1207725 | Msa0437460:intron | 55.0% | |
| CGCACCTCCACCTTGTAGTT+TGG | + | chr3_3:1207716-1207735 | None:intergenic | 55.0% | |
| GCCAGCAGCAATACCCTTCA+TGG | + | chr3_3:1207849-1207868 | None:intergenic | 55.0% | |
| TTCAGATTGCGCACCGCCGA+AGG | - | chr3_3:1204063-1204082 | Msa0437460:CDS | 60.0% | |
| CTTCGATGCTCACCTCCCTC+TGG | + | chr3_3:1204478-1204497 | None:intergenic | 60.0% | |
| GTACCGTGTTGTACTCGGGG+AGG | - | chr3_3:1205366-1205385 | Msa0437460:CDS | 60.0% | |
| GTGTTGTACTCGGGGAGGTG+AGG | - | chr3_3:1205371-1205390 | Msa0437460:CDS | 60.0% | |
| !! | CTGCTCCTGCTGCATTGGCT+CGG | - | chr3_3:1206111-1206130 | Msa0437460:CDS | 60.0% |
| CGCGGTGGAACTGTTGGAAG+AGG | - | chr3_3:1206314-1206333 | Msa0437460:CDS | 60.0% | |
| ACCAGAATGGCGCGCCTTGA+TGG | - | chr3_3:1206523-1206542 | Msa0437460:CDS | 60.0% | |
| TCCATCAAGGCGCGCCATTC+TGG | + | chr3_3:1206527-1206546 | None:intergenic | 60.0% | |
| ! | GCGCGCCTTGATGGATCAGA+TGG | - | chr3_3:1206532-1206551 | Msa0437460:CDS | 60.0% |
| CCGGCAAAGAGAAGGCCTAG+TGG | - | chr3_3:1206874-1206893 | Msa0437460:intron | 60.0% | |
| GCTCCAAAGCCCAGCCATAC+TGG | + | chr3_3:1206964-1206983 | None:intergenic | 60.0% | |
| GTGTTTGCCAAGGGAGACCC+TGG | - | chr3_3:1207090-1207109 | Msa0437460:intron | 60.0% | |
| GCTGCTGGCATGCAGAACAC+TGG | - | chr3_3:1207860-1207879 | Msa0437460:intron | 60.0% | |
| ACCATGTTCCACGGTCGCGG+TGG | - | chr3_3:1206299-1206318 | Msa0437460:CDS | 65.0% | |
| TCCACCGCGACCGTGGAACA+TGG | + | chr3_3:1206303-1206322 | None:intergenic | 65.0% | |
| CAACAGTTCCACCGCGACCG+TGG | + | chr3_3:1206310-1206329 | None:intergenic | 65.0% | |
| CACGGTCGCGGTGGAACTGT+TGG | - | chr3_3:1206308-1206327 | Msa0437460:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 1202422 | 1208116 | 1202422 | ID=Msa0437460;Name=Msa0437460 |
| chr3_3 | mRNA | 1202422 | 1208116 | 1202422 | ID=Msa0437460-mRNA-1;Parent=Msa0437460;Name=Msa0437460-mRNA-1;_AED=0.09;_eAED=0.09;_QI=246|1|1|1|0.9|0.81|11|230|966 |
| chr3_3 | exon | 1202422 | 1202948 | 1202422 | ID=Msa0437460-mRNA-1:exon:97;Parent=Msa0437460-mRNA-1 |
| chr3_3 | exon | 1203323 | 1203709 | 1203323 | ID=Msa0437460-mRNA-1:exon:96;Parent=Msa0437460-mRNA-1 |
| chr3_3 | exon | 1203913 | 1204911 | 1203913 | ID=Msa0437460-mRNA-1:exon:95;Parent=Msa0437460-mRNA-1 |
| chr3_3 | exon | 1205049 | 1205203 | 1205049 | ID=Msa0437460-mRNA-1:exon:94;Parent=Msa0437460-mRNA-1 |
| chr3_3 | exon | 1205329 | 1205422 | 1205329 | ID=Msa0437460-mRNA-1:exon:93;Parent=Msa0437460-mRNA-1 |
| chr3_3 | exon | 1205513 | 1205616 | 1205513 | ID=Msa0437460-mRNA-1:exon:92;Parent=Msa0437460-mRNA-1 |
| chr3_3 | exon | 1205708 | 1205930 | 1205708 | ID=Msa0437460-mRNA-1:exon:91;Parent=Msa0437460-mRNA-1 |
| chr3_3 | exon | 1206054 | 1206138 | 1206054 | ID=Msa0437460-mRNA-1:exon:90;Parent=Msa0437460-mRNA-1 |
| chr3_3 | exon | 1206247 | 1206638 | 1206247 | ID=Msa0437460-mRNA-1:exon:89;Parent=Msa0437460-mRNA-1 |
| chr3_3 | exon | 1207303 | 1207488 | 1207303 | ID=Msa0437460-mRNA-1:exon:88;Parent=Msa0437460-mRNA-1 |
| chr3_3 | exon | 1207892 | 1208116 | 1207892 | ID=Msa0437460-mRNA-1:exon:87;Parent=Msa0437460-mRNA-1 |
| chr3_3 | five_prime_UTR | 1207892 | 1208116 | 1207892 | ID=Msa0437460-mRNA-1:five_prime_utr;Parent=Msa0437460-mRNA-1 |
| chr3_3 | five_prime_UTR | 1207468 | 1207488 | 1207468 | ID=Msa0437460-mRNA-1:five_prime_utr;Parent=Msa0437460-mRNA-1 |
| chr3_3 | CDS | 1207303 | 1207467 | 1207303 | ID=Msa0437460-mRNA-1:cds;Parent=Msa0437460-mRNA-1 |
| chr3_3 | CDS | 1206247 | 1206638 | 1206247 | ID=Msa0437460-mRNA-1:cds;Parent=Msa0437460-mRNA-1 |
| chr3_3 | CDS | 1206054 | 1206138 | 1206054 | ID=Msa0437460-mRNA-1:cds;Parent=Msa0437460-mRNA-1 |
| chr3_3 | CDS | 1205708 | 1205930 | 1205708 | ID=Msa0437460-mRNA-1:cds;Parent=Msa0437460-mRNA-1 |
| chr3_3 | CDS | 1205513 | 1205616 | 1205513 | ID=Msa0437460-mRNA-1:cds;Parent=Msa0437460-mRNA-1 |
| chr3_3 | CDS | 1205329 | 1205422 | 1205329 | ID=Msa0437460-mRNA-1:cds;Parent=Msa0437460-mRNA-1 |
| chr3_3 | CDS | 1205049 | 1205203 | 1205049 | ID=Msa0437460-mRNA-1:cds;Parent=Msa0437460-mRNA-1 |
| chr3_3 | CDS | 1203913 | 1204911 | 1203913 | ID=Msa0437460-mRNA-1:cds;Parent=Msa0437460-mRNA-1 |
| chr3_3 | CDS | 1203323 | 1203709 | 1203323 | ID=Msa0437460-mRNA-1:cds;Parent=Msa0437460-mRNA-1 |
| chr3_3 | CDS | 1202652 | 1202948 | 1202652 | ID=Msa0437460-mRNA-1:cds;Parent=Msa0437460-mRNA-1 |
| chr3_3 | three_prime_UTR | 1202422 | 1202651 | 1202422 | ID=Msa0437460-mRNA-1:three_prime_utr;Parent=Msa0437460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
