AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0295740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0295740 MtrunA17_Chr2g0317931 96.353 850 11 5 1 835 1 845 0.0 1678
Msa0295740 MtrunA17_Chr7g0238321 51.705 528 216 8 202 719 271 769 3.60e-164 502
Msa0295740 MtrunA17_Chr8g0388841 33.415 817 408 24 25 831 7 697 4.30e-126 395
Msa0295740 MtrunA17_Chr3g0127171 42.075 530 249 14 321 831 195 685 1.09e-120 381
Msa0295740 MtrunA17_Chr1g0146771 43.539 503 232 16 339 831 232 692 1.63e-117 373
Msa0295740 MtrunA17_Chr8g0384061 36.111 504 231 9 340 831 204 628 8.78e-87 290
Msa0295740 MtrunA17_Chr3g0129821 42.632 380 190 6 340 719 168 519 1.56e-83 280
Msa0295740 MtrunA17_Chr4g0067151 31.390 223 137 9 466 682 65 277 1.03e-24 106
Msa0295740 MtrunA17_Chr1g0185501 29.302 215 134 10 475 682 65 268 7.62e-19 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0295740 AT5G54200.1 57.864 852 282 14 9 839 21 816 0.0 889
Msa0295740 AT3G15470.1 57.960 892 280 20 14 835 4 870 0.0 886
Msa0295740 AT2G37670.1 52.037 540 190 11 202 718 248 741 4.77e-161 493
Msa0295740 AT2G37670.2 52.037 540 190 11 202 718 249 742 5.69e-161 493
Msa0295740 AT5G02430.1 52.290 524 222 8 202 719 258 759 1.43e-156 481
Msa0295740 AT5G53500.2 41.155 554 245 15 284 831 159 637 1.25e-111 356
Msa0295740 AT5G53500.1 41.155 554 245 15 284 831 159 637 1.25e-111 356
Msa0295740 AT5G24320.1 41.098 528 240 12 321 831 204 677 7.77e-109 350
Msa0295740 AT5G24320.2 40.789 532 240 13 321 831 204 681 1.05e-106 344
Msa0295740 AT5G42010.1 39.648 512 233 14 342 830 233 691 1.06e-103 337
Msa0295740 AT1G64610.2 39.431 492 239 13 342 830 194 629 1.82e-99 324
Msa0295740 AT1G64610.1 39.431 492 239 13 342 830 194 629 1.82e-99 324
Msa0295740 AT5G42010.2 47.447 333 161 8 342 672 233 553 1.02e-89 295
Msa0295740 AT1G48870.2 32.389 494 245 9 340 832 172 577 3.33e-78 265
Msa0295740 AT1G48870.3 32.389 494 245 9 340 832 172 577 3.33e-78 265
Msa0295740 AT1G48870.1 32.389 494 245 9 340 832 172 577 3.33e-78 265
Msa0295740 AT4G02730.1 29.224 219 138 10 475 686 81 289 2.37e-20 94.0
Msa0295740 AT3G49660.1 28.636 220 141 9 470 683 62 271 3.80e-20 92.8
Msa0295740 AT3G49660.1 24.198 343 206 13 353 682 11 312 6.62e-13 71.2
Msa0295740 AT2G16405.1 25.410 244 146 9 464 682 199 431 1.75e-12 71.2

Find 256 sgRNAs with CRISPR-Local

Find 434 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATGTTATTTCTTGTTAA+TGG 0.154159 2_3:-48429388 Msa0295740:CDS
AAACCCGTTTGCTCCTTTAA+AGG 0.187744 2_3:-48429226 Msa0295740:CDS
GATCTGGTTCATAAGTTTAA+AGG 0.211448 2_3:-48426386 Msa0295740:intron
TTTCTTGGTCTTCGTCTTCT+TGG 0.228579 2_3:+48430484 None:intergenic
ATACTTCATTAGTGGATCTT+TGG 0.232896 2_3:-48426994 Msa0295740:CDS
TCCATTATCAAGATCTCTTA+TGG 0.253771 2_3:+48430032 None:intergenic
ATCATGCAAATGACCTTTAA+AGG 0.262544 2_3:+48429213 None:intergenic
GAATGCGATGAAATTGAAAA+AGG 0.265376 2_3:-48430072 Msa0295740:CDS
AGTATTAAGTTTAGTTTAGA+TGG 0.278056 2_3:-48429523 Msa0295740:CDS
CCCTTAACAGTTACGACATA+TGG 0.289130 2_3:-48430425 Msa0295740:CDS
AAGCTCATAATGGATCAATT+TGG 0.292538 2_3:-48429546 Msa0295740:CDS
TCAAATCACAAGAAAATTAC+TGG 0.302245 2_3:-48426570 Msa0295740:CDS
AGTACTGTTCCCGGTAATTC+TGG 0.305266 2_3:-48430204 Msa0295740:CDS
TCCTTTGGCGGATAATCTTC+TGG 0.309791 2_3:-48429341 Msa0295740:CDS
TTCCGGTGTTGATTTCTTGC+CGG 0.310114 2_3:-48430130 Msa0295740:CDS
GGGGAATTCTTCTACTTTGC+CGG 0.310297 2_3:-48430109 Msa0295740:CDS
TGGTAATGGAGGTTGTTCTA+AGG 0.310884 2_3:-48429812 Msa0295740:CDS
TCTTCTAGAAGAATTCTTTC+CGG 0.314096 2_3:+48430158 None:intergenic
CAAGAAAATTACTGGTTTCC+AGG 0.315246 2_3:-48426562 Msa0295740:intron
ATATGTTATTTCTTGTTAAT+GGG 0.320409 2_3:-48429387 Msa0295740:CDS
AGGGTGAGAGTGAGACAATA+TGG 0.320663 2_3:-48429616 Msa0295740:CDS
GAAAGGGGAGTTGTTGCTTA+TGG 0.321504 2_3:-48429434 Msa0295740:CDS
CGGATCGACAAGTTGTTGAT+TGG 0.329763 2_3:-48426944 Msa0295740:CDS
ACCCGTGACGTTGTCTCCTT+TGG 0.330639 2_3:-48429356 Msa0295740:CDS
CGGGGATCCGCCAGAATTAC+CGG 0.330665 2_3:+48430194 None:intergenic
GTCAGATTTGGATCGGAATA+TGG 0.333292 2_3:+48430293 None:intergenic
GGGGTTGTTGAGATTGAGAT+TGG 0.333340 2_3:+48430664 None:intergenic
GGAGACAACGTCACGGGTTC+CGG 0.336795 2_3:+48429361 None:intergenic
AATGAGAATGGGTTTGTTCA+TGG 0.340709 2_3:+48430635 None:intergenic
GCCGGTGGTGGTGTTGGAAA+TGG 0.352022 2_3:-48429841 Msa0295740:CDS
CCTCTCTTGGTCTAAGTCTC+AGG 0.354450 2_3:-48429182 Msa0295740:intron
ACTCGTCTTCTTCAAACTAT+TGG 0.355721 2_3:-48430369 Msa0295740:CDS
AGCCATTCCCTGGCCTGGTA+TGG 0.363748 2_3:-48426039 Msa0295740:CDS
GAGGGTTCACGATCTGCTTC+AGG 0.366525 2_3:-48425897 Msa0295740:CDS
GTCAGTATGGATTTCACAAA+TGG 0.367312 2_3:-48425753 Msa0295740:CDS
AAAGTGAAGGAGGTTGGTAC+TGG 0.368514 2_3:-48429964 Msa0295740:CDS
TGGAGCGAGGTGTTGGGGTT+CGG 0.369874 2_3:+48430885 None:intergenic
GATGATAGATACTTCATTAG+TGG 0.371354 2_3:-48427002 Msa0295740:CDS
TCCGGTGTTGATTTCTTGCC+GGG 0.372760 2_3:-48430129 Msa0295740:CDS
ACCATAAGAGATCTTGATAA+TGG 0.372863 2_3:-48430033 Msa0295740:CDS
AGAGATTGGAGCGAGGTGTT+GGG 0.377092 2_3:+48430879 None:intergenic
GGTGACACCTTTACTTCTGT+TGG 0.380370 2_3:+48426106 None:intergenic
TAGTAGGAAGTCGTTGAGTT+TGG 0.382361 2_3:-48429290 Msa0295740:CDS
TCAAAGCCCTCGTGTCAGTA+TGG 0.385856 2_3:-48425766 Msa0295740:CDS
TCCATATGTCGTAACTGTTA+AGG 0.386442 2_3:+48430424 None:intergenic
ATGGCATTGTAAGGTGGGAT+TGG 0.388194 2_3:+48430312 None:intergenic
TATCATCAACAGGATTAAAC+TGG 0.390022 2_3:+48427018 None:intergenic
CGCATAAGCTCCTGCACAAT+CGG 0.393774 2_3:+48429895 None:intergenic
TGTGAAGAATGAATGAGTTA+AGG 0.398605 2_3:+48430843 None:intergenic
ACTTCTGTTGGGCCTGCAAT+CGG 0.398774 2_3:+48426118 None:intergenic
GTGACACCTTTACTTCTGTT+GGG 0.400336 2_3:+48426107 None:intergenic
TTCGTCTTCTTGGTCAGAGT+TGG 0.402171 2_3:+48430494 None:intergenic
GCCTGGTATGGGTGATGCAT+GGG 0.403215 2_3:-48426027 Msa0295740:CDS
GTTGTTGCTTATGGAGAAAC+AGG 0.403691 2_3:-48429425 Msa0295740:CDS
AGTACTTCTGATGAACTTCC+TGG 0.405091 2_3:+48426452 None:intergenic
GTGAAAGAAGTTAGAGAAGA+TGG 0.405227 2_3:-48429997 Msa0295740:CDS
GTTGATGTTGTTGTTGGAGT+TGG 0.406911 2_3:+48430601 None:intergenic
GGCCTGGTATGGGTGATGCA+TGG 0.409184 2_3:-48426028 Msa0295740:CDS
ACCACGTGAAAGGGCAAAAT+CGG 0.410979 2_3:+48430338 None:intergenic
CCATATGTCGTAACTGTTAA+GGG 0.412326 2_3:+48430425 None:intergenic
CAAGAGATTCAAGCTCATAA+TGG 0.414387 2_3:-48429556 Msa0295740:CDS
GTTGTTATGACCGTCAGATT+TGG 0.414968 2_3:+48430281 None:intergenic
GTTGGTGTTGATGTTGTTGT+TGG 0.416733 2_3:+48430595 None:intergenic
TTCCGGACGGAGGTTTAGCC+GGG 0.417860 2_3:+48430175 None:intergenic
GATTCATGTTTGGCAGGTTG+TGG 0.418930 2_3:-48429467 Msa0295740:CDS
GTTTGTGTATGGTGAGAGAT+TGG 0.420689 2_3:+48430865 None:intergenic
AACCACACTAACATTTGCTC+AGG 0.422037 2_3:-48430722 Msa0295740:five_prime_UTR
TTTACAGTGAAAATGTTCAT+AGG 0.422742 2_3:+48426073 None:intergenic
ATGATGTGCTTGACCTCTCT+TGG 0.423598 2_3:-48429195 Msa0295740:CDS
TTGTGGAGTCTGAGAGGAAA+GGG 0.424221 2_3:-48429450 Msa0295740:CDS
TTCTTCTACTTTGCCGGACA+CGG 0.424991 2_3:-48430103 Msa0295740:CDS
GAGAGATTGGAGCGAGGTGT+TGG 0.426085 2_3:+48430878 None:intergenic
CATTCTATTTCACCCGTGTC+CGG 0.427553 2_3:+48430090 None:intergenic
ATTCGTAGAAGAAATCTTGT+TGG 0.429715 2_3:+48430565 None:intergenic
AATGTAAATAGTACTGTTCC+CGG 0.431742 2_3:-48430213 Msa0295740:CDS
AGGATTGTGTGATTCATGTT+TGG 0.432003 2_3:-48429477 Msa0295740:CDS
AGTGAGTGCAAACACATGTT+CGG 0.432044 2_3:+48429252 None:intergenic
AGGATTCCCATGTATACATC+TGG 0.438205 2_3:-48426151 Msa0295740:CDS
TACTGGGAGACAGTTGACTA+TGG 0.438212 2_3:-48429947 Msa0295740:CDS
AGTCAAGATGGGTCATTTCA+TGG 0.438874 2_3:-48429646 Msa0295740:CDS
TTGTTATACACCTGATGGTC+AGG 0.439552 2_3:-48426892 Msa0295740:intron
GATCGGAATATGGCATTGTA+AGG 0.442136 2_3:+48430303 None:intergenic
CTGTGAGGGAGGCTGAAATC+TGG 0.442676 2_3:+48426204 None:intergenic
TGTCTCACTCTCACCCTCTC+AGG 0.442951 2_3:+48429622 None:intergenic
CTTGAACCAACCTGACCATC+AGG 0.443778 2_3:+48426882 None:intergenic
TTTGAGAGAGATTTAAGAGA+GGG 0.447068 2_3:+48430814 None:intergenic
GTTGAGTTTGGACCAGTTTG+TGG 0.447377 2_3:-48429278 Msa0295740:CDS
TGGCATTGTAAGGTGGGATT+GGG 0.449165 2_3:+48430313 None:intergenic
AGGGGAGGTCGTCCGTTAGT+AGG 0.450408 2_3:-48429306 Msa0295740:CDS
GCCATTCCCTGGCCTGGTAT+GGG 0.450820 2_3:-48426038 Msa0295740:CDS
CTTCTGGAGAGGAAGAGAAA+GGG 0.453072 2_3:-48429325 Msa0295740:CDS
GGTTCGCATATGGAGCATTC+CGG 0.453183 2_3:-48426964 Msa0295740:CDS
TAGTTCAATGGCGGGTCATA+AGG 0.453276 2_3:-48429743 Msa0295740:CDS
TCTCGAATACGGGTTGTTGA+TGG 0.453927 2_3:-48426413 Msa0295740:CDS
ATGAAGTATCTATCATCAAC+AGG 0.454580 2_3:+48427008 None:intergenic
TGGATGCTAAGGTTCGCATA+TGG 0.456377 2_3:-48426974 Msa0295740:CDS
GTCGTTGTTGCTATCAAGCT+CGG 0.457779 2_3:+48425974 None:intergenic
TAGTGGATCTTTGGATGCTA+AGG 0.458377 2_3:-48426985 Msa0295740:CDS
ATGACCTTTAAAGGAGCAAA+CGG 0.460221 2_3:+48429222 None:intergenic
AGAGATACTTCGTCGGAGAA+AGG 0.460899 2_3:-48429700 Msa0295740:CDS
GGGTGAGAGTGAGACAATAT+GGG 0.461483 2_3:-48429615 Msa0295740:CDS
TCTTCTAGAAGAAGTCATTC+CGG 0.463152 2_3:-48430147 Msa0295740:CDS
AGTAGAAGAAGAGATAAAAC+AGG 0.465592 2_3:+48430239 None:intergenic
GCACTTGCTCTCATCTTCAA+TGG 0.466256 2_3:-48427550 Msa0295740:CDS
GGTTGTTGATGGTATTGATC+TGG 0.466728 2_3:-48426402 Msa0295740:CDS
TGCATCACCCATACCAGGCC+AGG 0.466953 2_3:+48426031 None:intergenic
CCGGTGGTGGTGTTGGAAAT+GGG 0.467471 2_3:-48429840 Msa0295740:CDS
GGTAATGGAGGTTGTTCTAA+GGG 0.468975 2_3:-48429811 Msa0295740:CDS
AATCTTGTTGGTCTAGTTGT+TGG 0.470295 2_3:+48430577 None:intergenic
GTGAGTGCAAACACATGTTC+GGG 0.470370 2_3:+48429253 None:intergenic
GGAAGAAGAAAGGAGGGAGT+TGG 0.471803 2_3:-48429789 Msa0295740:CDS
CGGTAATTCTGGCGGATCCC+CGG 0.475497 2_3:-48430193 Msa0295740:CDS
CATGTTCGGGAACCACAAAC+TGG 0.476756 2_3:+48429266 None:intergenic
GTATTAAGTTTAGTTTAGAT+GGG 0.476966 2_3:-48429522 Msa0295740:CDS
TTGTGTGATTCATGTTTGGC+AGG 0.477071 2_3:-48429473 Msa0295740:CDS
TTTCCGGACGGAGGTTTAGC+CGG 0.477265 2_3:+48430174 None:intergenic
AAGAGGAGAGAGAGAGTAAA+CGG 0.478902 2_3:+48430535 None:intergenic
TCAGTAGCCATTCCCTGGCC+TGG 0.479922 2_3:-48426044 Msa0295740:CDS
CATCTGCTGATTCTCGAATA+CGG 0.481379 2_3:-48426424 Msa0295740:CDS
ATATTTACCATTTGCTGTGA+GGG 0.481702 2_3:+48426190 None:intergenic
CGTGACGTTGTCTCCTTTGG+CGG 0.482687 2_3:-48429353 Msa0295740:CDS
ACCGGTGATGTAGCCGGTGG+TGG 0.485090 2_3:-48429853 Msa0295740:CDS
TGTCATTTATATAATACATC+TGG 0.485507 2_3:-48426757 Msa0295740:intron
TCAGCCTCCCTCACAGCAAA+TGG 0.486149 2_3:-48426197 Msa0295740:CDS
TGTTCTAAGGGGAAGAAGAA+AGG 0.488845 2_3:-48429799 Msa0295740:CDS
TGGACAAAACAGTGCGGCTG+TGG 0.490355 2_3:-48427530 Msa0295740:CDS
GTTGAGATTGAGATTGGGAT+TGG 0.490619 2_3:+48430670 None:intergenic
GGGTTGTTGAGATTGAGATT+GGG 0.491004 2_3:+48430665 None:intergenic
TTGAGATTGAGATTGGGATT+GGG 0.492778 2_3:+48430671 None:intergenic
TCAGTATGGATTTCACAAAT+GGG 0.493127 2_3:-48425752 Msa0295740:CDS
ATTGTTACTGCTGGTCTTCG+AGG 0.493885 2_3:-48425696 Msa0295740:intron
CAATCAACAACTTGTCGATC+CGG 0.494327 2_3:+48426945 None:intergenic
ACGAGTACGACGTTCTGAAA+CGG 0.496617 2_3:+48430386 None:intergenic
TCTGTGCAGGGTGCACTAGT+TGG 0.499249 2_3:-48426796 Msa0295740:intron
TACAGGTGTAGGAGGATGAT+TGG 0.499821 2_3:+48425938 None:intergenic
TGGAATAAAGTGAAGGAGGT+TGG 0.500727 2_3:-48429970 Msa0295740:CDS
GATGTAGCCGGTGGTGGTGT+TGG 0.500879 2_3:-48429847 Msa0295740:CDS
TTCTTGGTCAGAGTTGGAGT+TGG 0.500980 2_3:+48430500 None:intergenic
ACACAGAAACATTTGCTCTC+TGG 0.501437 2_3:-48430908 Msa0295740:five_prime_UTR
CGGAATATGGCATTGTAAGG+TGG 0.504983 2_3:+48430306 None:intergenic
CGAGTTGATATCAGCTCAGA+AGG 0.505155 2_3:-48425584 Msa0295740:CDS
TAGAATTTCTGCAACATGGC+CGG 0.505340 2_3:-48425817 Msa0295740:CDS
GTCTTCTTGAGAAATGAGAA+TGG 0.506187 2_3:+48430623 None:intergenic
TCTTCTGGAGAGGAAGAGAA+AGG 0.514361 2_3:-48429326 Msa0295740:CDS
GTTGGAGTTGGAACAAGAGC+AGG 0.515164 2_3:+48430512 None:intergenic
GAGGAGGTCGAGCTCGGCTA+CGG 0.516325 2_3:-48429674 Msa0295740:CDS
TCTTCTTGAGAAATGAGAAT+GGG 0.517246 2_3:+48430624 None:intergenic
CACTAACATTTGCTCAGGGA+AGG 0.519154 2_3:-48430717 Msa0295740:five_prime_UTR
CGTCGGAGAAAGGCGGGAGG+AGG 0.519256 2_3:-48429690 Msa0295740:CDS
GGTATGGTGATTGTTACTGC+TGG 0.519931 2_3:-48425705 Msa0295740:CDS
CCCATTTCCAACACCACCAC+CGG 0.520955 2_3:+48429840 None:intergenic
ATCTGCTGATTCTCGAATAC+GGG 0.522317 2_3:-48426423 Msa0295740:CDS
TGCACTAGTTGGTTCATACA+AGG 0.522538 2_3:-48426785 Msa0295740:CDS
TGGTCAATCTCCGATTGTGC+AGG 0.524667 2_3:-48429905 Msa0295740:CDS
TGACCTTTAAAGGAGCAAAC+GGG 0.525285 2_3:+48429223 None:intergenic
GTTGGAACAAGAGCAGGAAG+AGG 0.525322 2_3:+48430518 None:intergenic
GGATTGGGTTACCACGTGAA+AGG 0.527047 2_3:+48430328 None:intergenic
CAAGAGTGTTGCTAGTTCAA+TGG 0.527850 2_3:-48429755 Msa0295740:CDS
ATACTTCGTCGGAGAAAGGC+GGG 0.528933 2_3:-48429696 Msa0295740:CDS
GGGAAATATCTTGCTAGTGC+TGG 0.528990 2_3:-48429502 Msa0295740:CDS
CTAAGGGGAAGAAGAAAGGA+GGG 0.531994 2_3:-48429795 Msa0295740:CDS
ACCACCACCGGCTACATCAC+CGG 0.532113 2_3:+48429852 None:intergenic
TCCCATGCATCACCCATACC+AGG 0.535005 2_3:+48426026 None:intergenic
GAGATTGGAGCGAGGTGTTG+GGG 0.536749 2_3:+48430880 None:intergenic
TGCAGGCCCAACAGAAGTAA+AGG 0.537014 2_3:-48426113 Msa0295740:CDS
AGGCGGGAGGAGGTCGAGCT+CGG 0.539651 2_3:-48429680 Msa0295740:CDS
GTACTTCTGATGAACTTCCT+GGG 0.541085 2_3:+48426453 None:intergenic
GGAATATGGCATTGTAAGGT+GGG 0.542196 2_3:+48430307 None:intergenic
GCTACGGATGATAGTCAAGA+TGG 0.542559 2_3:-48429658 Msa0295740:CDS
AATGAGTTAAGGTTTGTGTA+TGG 0.542837 2_3:+48430854 None:intergenic
TCCCCGGCTAAACCTCCGTC+CGG 0.543498 2_3:-48430177 Msa0295740:CDS
CGGTCTCCTCATGATTCTGC+CGG 0.544667 2_3:+48429872 None:intergenic
TCGATAGAATTTCTGCAACA+TGG 0.545086 2_3:-48425821 Msa0295740:CDS
AGATCACCTTCTCCATAAGC+TGG 0.546253 2_3:-48425555 Msa0295740:CDS
CGACGTTCTGAAACGGAAGA+AGG 0.546555 2_3:+48430393 None:intergenic
ATTTGAGAGAGATTTAAGAG+AGG 0.546952 2_3:+48430813 None:intergenic
TGTGGAGTCTGAGAGGAAAG+GGG 0.547241 2_3:-48429449 Msa0295740:CDS
CTCGCAATGGTTGCATGGTG+TGG 0.549432 2_3:+48425864 None:intergenic
AAGTTAGAGAAGATGGAATG+TGG 0.550294 2_3:-48429990 Msa0295740:CDS
GATTGGGTTACCACGTGAAA+GGG 0.551300 2_3:+48430329 None:intergenic
TCTAAGGGGAAGAAGAAAGG+AGG 0.552386 2_3:-48429796 Msa0295740:CDS
GGAAATGGGAGTAATGGTAA+TGG 0.552792 2_3:-48429826 Msa0295740:CDS
TATGACCGTCAGATTTGGAT+CGG 0.552937 2_3:+48430286 None:intergenic
GAGGAATTTGAGATGACGGT+TGG 0.552951 2_3:-48429925 Msa0295740:CDS
TCTTCTACTTTGCCGGACAC+GGG 0.553423 2_3:-48430102 Msa0295740:CDS
ACTGTTTGTCGCACTCGCAA+TGG 0.554025 2_3:+48425851 None:intergenic
AAGTGAAGGAGGTTGGTACT+GGG 0.559730 2_3:-48429963 Msa0295740:CDS
GAGGAGACCGGTGATGTAGC+CGG 0.560566 2_3:-48429859 Msa0295740:CDS
TCCCTGAGCAAATGTTAGTG+TGG 0.561014 2_3:+48430720 None:intergenic
ATTTCTTGTTAATGGGTCGC+CGG 0.562164 2_3:-48429380 Msa0295740:CDS
TTGGATCGATCTTCATGAGA+TGG 0.562964 2_3:-48426925 Msa0295740:CDS
ACCCATACCAGGCCAGGGAA+TGG 0.565424 2_3:+48426037 None:intergenic
ATGTGTCAGTAGCCATTCCC+TGG 0.566854 2_3:-48426049 Msa0295740:CDS
TCGCACTCGCAATGGTTGCA+TGG 0.572307 2_3:+48425859 None:intergenic
GGTGTTGGAAATGGGAGTAA+TGG 0.576549 2_3:-48429832 Msa0295740:CDS
GATACTTCGTCGGAGAAAGG+CGG 0.578609 2_3:-48429697 Msa0295740:CDS
TTTACCATTTGCTGTGAGGG+AGG 0.584191 2_3:+48426193 None:intergenic
AGAGGAAAACTTCGGTGTCG+AGG 0.584446 2_3:-48425916 Msa0295740:CDS
AGTGTTGCTAGTTCAATGGC+GGG 0.585999 2_3:-48429751 Msa0295740:CDS
TTCTGGAGAGGAAGAGAAAG+GGG 0.586118 2_3:-48429324 Msa0295740:CDS
GGGGATCCGCCAGAATTACC+GGG 0.588995 2_3:+48430195 None:intergenic
CGGCAGAATCATGAGGAGAC+CGG 0.589002 2_3:-48429871 Msa0295740:CDS
GCCAAAGGAGACAACGTCAC+GGG 0.589907 2_3:+48429355 None:intergenic
ATATATTGTTGCTGCAAGTG+AGG 0.589984 2_3:-48426171 Msa0295740:CDS
GAGGAAAACTTCGGTGTCGA+GGG 0.590606 2_3:-48425915 Msa0295740:CDS
TCATCCTCCTACACCTGTAG+AGG 0.591962 2_3:-48425934 Msa0295740:CDS
CTAGAAGAATTCTTTCCGGA+CGG 0.592446 2_3:+48430162 None:intergenic
GAAGAATTCTTTCCGGACGG+AGG 0.594884 2_3:+48430165 None:intergenic
ATATCTTGCTAGTGCTGGTG+AGG 0.595765 2_3:-48429497 Msa0295740:CDS
AATGGGAGTAATGGTAATGG+AGG 0.600063 2_3:-48429823 Msa0295740:CDS
GGCAAAGTAGAAGAATTCCC+CGG 0.602827 2_3:+48430111 None:intergenic
AGTAACAATCACCATACCCC+AGG 0.610628 2_3:+48425710 None:intergenic
TCCAGAAGATTATCCGCCAA+AGG 0.612551 2_3:+48429340 None:intergenic
ACTAACATTTGCTCAGGGAA+GGG 0.613923 2_3:-48430716 Msa0295740:five_prime_UTR
GTTGTGGAGTCTGAGAGGAA+AGG 0.615157 2_3:-48429451 Msa0295740:CDS
GTCATTTCATGGACCTGAGA+GGG 0.616808 2_3:-48429635 Msa0295740:CDS
TATATTTACCATTTGCTGTG+AGG 0.618354 2_3:+48426189 None:intergenic
ACCACACTAACATTTGCTCA+GGG 0.618518 2_3:-48430721 Msa0295740:five_prime_UTR
TATGGAGGAATTTGAGATGA+CGG 0.619376 2_3:-48429929 Msa0295740:CDS
GCATCACCCATACCAGGCCA+GGG 0.621344 2_3:+48426032 None:intergenic
GCTGCTTGTTATACACCTGA+TGG 0.625541 2_3:-48426897 Msa0295740:CDS
GGCAGGTTGTGGAGTCTGAG+AGG 0.626338 2_3:-48429456 Msa0295740:CDS
TACTTCTGATGAACTTCCTG+GGG 0.627143 2_3:+48426454 None:intergenic
CTACGGATGATAGTCAAGAT+GGG 0.627312 2_3:-48429657 Msa0295740:CDS
TGGCGGATAATCTTCTGGAG+AGG 0.629487 2_3:-48429336 Msa0295740:CDS
CCTGAGACTTAGACCAAGAG+AGG 0.630082 2_3:+48429182 None:intergenic
CCGGTGTTGATTTCTTGCCG+GGG 0.630342 2_3:-48430128 Msa0295740:CDS
TTGTGCAGGAGCTTATGCGC+CGG 0.632452 2_3:-48429891 Msa0295740:CDS
GAGTGTTGCTAGTTCAATGG+CGG 0.637336 2_3:-48429752 Msa0295740:CDS
TGGAATGTGGAATAAAGTGA+AGG 0.638048 2_3:-48429977 Msa0295740:CDS
CAATGGCGGGTCATAAGGAG+AGG 0.638802 2_3:-48429738 Msa0295740:CDS
TGGAGAGGAAGAGAAAGGGG+AGG 0.640683 2_3:-48429321 Msa0295740:CDS
CCCCGGCAAGAAATCAACAC+CGG 0.643592 2_3:+48430128 None:intergenic
TGGCGGGTCATAAGGAGAGG+AGG 0.643676 2_3:-48429735 Msa0295740:CDS
GTAATGGAGGTTGTTCTAAG+GGG 0.650046 2_3:-48429810 Msa0295740:CDS
TGATGAGAGAGATACTTCGT+CGG 0.650321 2_3:-48429707 Msa0295740:CDS
ATATTCCGATCCAAATCTGA+CGG 0.651541 2_3:-48430291 Msa0295740:CDS
ACTCAACGACTTCCTACTAA+CGG 0.653986 2_3:+48429294 None:intergenic
CAGTATGGATTTCACAAATG+GGG 0.657850 2_3:-48425751 Msa0295740:CDS
CGCCAAAGGAGACAACGTCA+CGG 0.658328 2_3:+48429354 None:intergenic
ACTGTTCCCGGTAATTCTGG+CGG 0.661998 2_3:-48430201 Msa0295740:CDS
GGTCATTTCATGGACCTGAG+AGG 0.666445 2_3:-48429636 Msa0295740:CDS
TATGCGCCGGCAGAATCATG+AGG 0.668765 2_3:-48429878 Msa0295740:CDS
GTTGCTTATGGAGAAACAGG+AGG 0.670617 2_3:-48429422 Msa0295740:CDS
TGGGAGACAGTTGACTATGG+AGG 0.676143 2_3:-48429944 Msa0295740:CDS
ACACCTGTAGAGGAAAACTT+CGG 0.682782 2_3:-48425924 Msa0295740:CDS
GCACTAGTTGGTTCATACAA+GGG 0.684365 2_3:-48426784 Msa0295740:CDS
TCCGGACGGAGGTTTAGCCG+GGG 0.685261 2_3:+48430176 None:intergenic
AATGTGGAATAAAGTGAAGG+AGG 0.688067 2_3:-48429974 Msa0295740:CDS
GTGAAATCCATACTGACACG+AGG 0.695168 2_3:+48425759 None:intergenic
ATGTTCATAGGACTGTGTCA+CGG 0.698331 2_3:+48426085 None:intergenic
TGAAATCCATACTGACACGA+GGG 0.711651 2_3:+48425760 None:intergenic
TATGGTGAGAGATTGGAGCG+AGG 0.720760 2_3:+48430872 None:intergenic
CTTCGTCGGAGAAAGGCGGG+AGG 0.733071 2_3:-48429693 Msa0295740:CDS
GAGACCGGTGATGTAGCCGG+TGG 0.736645 2_3:-48429856 Msa0295740:CDS
CTTCAATGGACAAAACAGTG+CGG 0.776088 2_3:-48427536 Msa0295740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATGTTATTTCTTGTTAA+TGG - chr2_3:48427045-48427064 Msa0295740:intron 15.0%
!!! ATATGTTATTTCTTGTTAAT+GGG - chr2_3:48427046-48427065 Msa0295740:intron 15.0%
!!! TCAGTATTGATTTTATAATT+GGG - chr2_3:48427483-48427502 Msa0295740:CDS 15.0%
!!! TTTATAAACTTCGTTTTTAA+TGG - chr2_3:48427821-48427840 Msa0295740:intron 15.0%
!!! TTATAAACTTCGTTTTTAAT+GGG - chr2_3:48427822-48427841 Msa0295740:intron 15.0%
!!! CATTTAAAATGAACAATTTA+GGG - chr2_3:48427909-48427928 Msa0295740:intron 15.0%
!!! TAAATACAATTTTAGTTTTG+TGG + chr2_3:48428247-48428266 None:intergenic 15.0%
!! GTTTAACAACAAAAATAATT+TGG + chr2_3:48428320-48428339 None:intergenic 15.0%
!!! ATCTAATTCAATTTTTAGTA+GGG + chr2_3:48429136-48429155 None:intergenic 15.0%
!!! AATCTAATTCAATTTTTAGT+AGG + chr2_3:48429137-48429156 None:intergenic 15.0%
!! TAATTAGCAAAGAAAAAAAA+CGG + chr2_3:48429346-48429365 None:intergenic 15.0%
!! AATACAATTTATCATACAAA+TGG + chr2_3:48430135-48430154 None:intergenic 15.0%
!!! AGTATTAAGTTTAGTTTAGA+TGG - chr2_3:48426910-48426929 Msa0295740:CDS 20.0%
!!! GTATTAAGTTTAGTTTAGAT+GGG - chr2_3:48426911-48426930 Msa0295740:CDS 20.0%
!! ATTTACTATTCACTCTTATA+TGG - chr2_3:48427354-48427373 Msa0295740:intron 20.0%
!!! CTCAGTATTGATTTTATAAT+TGG - chr2_3:48427482-48427501 Msa0295740:CDS 20.0%
!! GTACATTTAACTGTTAAAAT+TGG - chr2_3:48427573-48427592 Msa0295740:intron 20.0%
!!! AAAATGGTTTATTTTTCCAA+CGG - chr2_3:48427848-48427867 Msa0295740:intron 20.0%
!!! GCATTTAAAATGAACAATTT+AGG - chr2_3:48427908-48427927 Msa0295740:intron 20.0%
!! AAATTAACTTCTGATTAAGT+AGG - chr2_3:48428203-48428222 Msa0295740:intron 20.0%
!!! AATTTTAGTTTTGTGGTAAA+AGG + chr2_3:48428240-48428259 None:intergenic 20.0%
!! AGACAAAAGTTATTTGTAAT+TGG - chr2_3:48428363-48428382 Msa0295740:intron 20.0%
!! GAAACCATATTTAACATAAA+AGG - chr2_3:48428407-48428426 Msa0295740:intron 20.0%
!!! CAAACCTTTTATGTTAAATA+TGG + chr2_3:48428414-48428433 None:intergenic 20.0%
!! CATATTTAACATAAAAGGTT+TGG - chr2_3:48428412-48428431 Msa0295740:intron 20.0%
!!! TGAATTTTGAATAGATTCTT+TGG - chr2_3:48428681-48428700 Msa0295740:intron 20.0%
!!! GAATTTTGAATAGATTCTTT+GGG - chr2_3:48428682-48428701 Msa0295740:intron 20.0%
!!! AAAAACACATAAAAAGTACA+CGG + chr2_3:48429091-48429110 None:intergenic 20.0%
!!! TGTCATTTATATAATACATC+TGG - chr2_3:48429676-48429695 Msa0295740:CDS 20.0%
!!! ATTAGAACTTTCCAAAATTT+TGG - chr2_3:48430764-48430783 Msa0295740:five_prime_UTR 20.0%
!!! TCTGATCAAGTTTTTTAGAA+TGG + chr2_3:48425678-48425697 None:intergenic 25.0%
! AATGCGATGAAATTGAAAAA+GGG - chr2_3:48426362-48426381 Msa0295740:intron 25.0%
!!! GTATTGATTTTATAATTGGG+TGG - chr2_3:48427486-48427505 Msa0295740:CDS 25.0%
! AAATGTACTCTTATACAACT+TGG + chr2_3:48427601-48427620 None:intergenic 25.0%
! TTAGTTATTAGAGTACATAC+AGG - chr2_3:48427649-48427668 Msa0295740:intron 25.0%
! TTAAAATGAACAATTTAGGG+AGG - chr2_3:48427912-48427931 Msa0295740:intron 25.0%
!! GTTTGATATTTTCTTTGACA+AGG - chr2_3:48427981-48428000 Msa0295740:intron 25.0%
! ATATGTTGATGTCTTTACAA+TGG - chr2_3:48428157-48428176 Msa0295740:intron 25.0%
! AATCAGTTCAAAACTTTCAA+AGG + chr2_3:48428461-48428480 None:intergenic 25.0%
! CAATAAGGTATGAATCAAAT+AGG + chr2_3:48428557-48428576 None:intergenic 25.0%
! TGATTCATACCTTATTGTTA+TGG - chr2_3:48428560-48428579 Msa0295740:intron 25.0%
!!! CAAATTTTAATAACTACCAG+AGG + chr2_3:48428612-48428631 None:intergenic 25.0%
!! AAAACACATAAAAAGTACAC+GGG + chr2_3:48429090-48429109 None:intergenic 25.0%
! AACTATATCTTGAATCAGAT+TGG + chr2_3:48429181-48429200 None:intergenic 25.0%
! GAGTTCTTTAATATCCTATA+GGG - chr2_3:48429276-48429295 Msa0295740:CDS 25.0%
! TCAAATCACAAGAAAATTAC+TGG - chr2_3:48429863-48429882 Msa0295740:CDS 25.0%
! CAGTAAATCATTAAATTACC+TGG + chr2_3:48429892-48429911 None:intergenic 25.0%
! CAGGTAATTTAATGATTTAC+TGG - chr2_3:48429890-48429909 Msa0295740:CDS 25.0%
! AATCATAAGCATCATAACTT+TGG + chr2_3:48429928-48429947 None:intergenic 25.0%
!! ATTTTTCCAGATGTATACAT+GGG + chr2_3:48430291-48430310 None:intergenic 25.0%
! TTTACAGTGAAAATGTTCAT+AGG + chr2_3:48430363-48430382 None:intergenic 25.0%
! ATAGTCATACACATATTCTA+TGG + chr2_3:48430813-48430832 None:intergenic 25.0%
AATGAGTTAAGGTTTGTGTA+TGG + chr2_3:48425582-48425601 None:intergenic 30.0%
TGTGAAGAATGAATGAGTTA+AGG + chr2_3:48425593-48425612 None:intergenic 30.0%
TTTGAGAGAGATTTAAGAGA+GGG + chr2_3:48425622-48425641 None:intergenic 30.0%
ATTTGAGAGAGATTTAAGAG+AGG + chr2_3:48425623-48425642 None:intergenic 30.0%
!!! GATCAAGTTTTTTAGAATGG+AGG + chr2_3:48425675-48425694 None:intergenic 30.0%
!!! AAGGGCATTTTCATTGAAAT+GGG - chr2_3:48425735-48425754 Msa0295740:CDS 30.0%
TCTTCTTGAGAAATGAGAAT+GGG + chr2_3:48425812-48425831 None:intergenic 30.0%
ATTCGTAGAAGAAATCTTGT+TGG + chr2_3:48425871-48425890 None:intergenic 30.0%
!!! TGTTGTTGTTGTTGTTTTCT+TGG + chr2_3:48425967-48425986 None:intergenic 30.0%
AGTAGAAGAAGAGATAAAAC+AGG + chr2_3:48426197-48426216 None:intergenic 30.0%
AATGTAAATAGTACTGTTCC+CGG - chr2_3:48426220-48426239 Msa0295740:CDS 30.0%
! TCTTCTAGAAGAATTCTTTC+CGG + chr2_3:48426278-48426297 None:intergenic 30.0%
GAATGCGATGAAATTGAAAA+AGG - chr2_3:48426361-48426380 Msa0295740:intron 30.0%
ATGCGATGAAATTGAAAAAG+GGG - chr2_3:48426363-48426382 Msa0295740:intron 30.0%
ACCATAAGAGATCTTGATAA+TGG - chr2_3:48426400-48426419 Msa0295740:CDS 30.0%
TCCATTATCAAGATCTCTTA+TGG + chr2_3:48426404-48426423 None:intergenic 30.0%
!! AAGCTCATAATGGATCAATT+TGG - chr2_3:48426887-48426906 Msa0295740:intron 30.0%
ATCATGCAAATGACCTTTAA+AGG + chr2_3:48427223-48427242 None:intergenic 30.0%
!!! TTAGCTTCTGTTTTTTGGAT+AGG - chr2_3:48427274-48427293 Msa0295740:intron 30.0%
!! TTGGATAGGTCTTTTTGTTT+TGG - chr2_3:48427288-48427307 Msa0295740:intron 30.0%
ATGTACACTTATATGCAACT+TGG + chr2_3:48427559-48427578 None:intergenic 30.0%
AAATTTGAGTCTGATTGAGT+AGG + chr2_3:48427798-48427817 None:intergenic 30.0%
!! CGTTTTTAATGGGTCTAAAA+TGG - chr2_3:48427832-48427851 Msa0295740:intron 30.0%
! TTTTCTTTGACAAGGAAACA+TGG - chr2_3:48427989-48428008 Msa0295740:intron 30.0%
AAGATGTCTGTTGAATAAAG+CGG - chr2_3:48428071-48428090 Msa0295740:intron 30.0%
AATAAAGCGGTAACTTACTT+AGG - chr2_3:48428084-48428103 Msa0295740:intron 30.0%
TAGGATGGTTATTTGTAACT+TGG - chr2_3:48428103-48428122 Msa0295740:intron 30.0%
AGGATGGTTATTTGTAACTT+GGG - chr2_3:48428104-48428123 Msa0295740:intron 30.0%
!!! TTAGTTTTGTGGTAAAAGGA+TGG + chr2_3:48428236-48428255 None:intergenic 30.0%
AGAGGATGTTTATGTAAACT+AGG - chr2_3:48428520-48428539 Msa0295740:intron 30.0%
TGCGAAGTATAAACATTACA+AGG + chr2_3:48428854-48428873 None:intergenic 30.0%
!!! ATTTTTTCACACAGTGACTA+TGG - chr2_3:48428953-48428972 Msa0295740:intron 30.0%
TATATACATGCACATTAGAG+TGG + chr2_3:48429057-48429076 None:intergenic 30.0%
!!! TTCAATTTTTAGTAGGGAAG+AGG + chr2_3:48429130-48429149 None:intergenic 30.0%
ATCTTGAATCAGATTGGATA+GGG + chr2_3:48429175-48429194 None:intergenic 30.0%
TATCTTGAATCAGATTGGAT+AGG + chr2_3:48429176-48429195 None:intergenic 30.0%
TATTTGTCTTCACTGCATAT+AGG - chr2_3:48429240-48429259 Msa0295740:CDS 30.0%
GGAGTTCTTTAATATCCTAT+AGG - chr2_3:48429275-48429294 Msa0295740:CDS 30.0%
TTCTTTAATATCCTATAGGG+TGG - chr2_3:48429279-48429298 Msa0295740:CDS 30.0%
TAGCAAAGAAAAAAAACGGA+GGG + chr2_3:48429342-48429361 None:intergenic 30.0%
TTAGCAAAGAAAAAAAACGG+AGG + chr2_3:48429343-48429362 None:intergenic 30.0%
AAGCAGATAGAAACGAAAAA+AGG + chr2_3:48429371-48429390 None:intergenic 30.0%
TATCATCAACAGGATTAAAC+TGG + chr2_3:48429418-48429437 None:intergenic 30.0%
! ATGAAGTATCTATCATCAAC+AGG + chr2_3:48429428-48429447 None:intergenic 30.0%
GATGATAGATACTTCATTAG+TGG - chr2_3:48429431-48429450 Msa0295740:CDS 30.0%
! ATACTTCATTAGTGGATCTT+TGG - chr2_3:48429439-48429458 Msa0295740:CDS 30.0%
!! TGAATTTCTGAAGTCTGAAA+TGG + chr2_3:48429589-48429608 None:intergenic 30.0%
TTAGTTAAATTGTCTGTGCA+GGG - chr2_3:48429625-48429644 Msa0295740:CDS 30.0%
ATACTCTATTCTGACAATTG+TGG - chr2_3:48429751-48429770 Msa0295740:CDS 30.0%
AAAAACAAGATGTTAACCAG+TGG + chr2_3:48429777-48429796 None:intergenic 30.0%
! GATCTGGTTCATAAGTTTAA+AGG - chr2_3:48430047-48430066 Msa0295740:CDS 30.0%
!! ATATTTACCATTTGCTGTGA+GGG + chr2_3:48430246-48430265 None:intergenic 30.0%
!! TATATTTACCATTTGCTGTG+AGG + chr2_3:48430247-48430266 None:intergenic 30.0%
! CATTTTTCCAGATGTATACA+TGG + chr2_3:48430292-48430311 None:intergenic 30.0%
TCAGTATGGATTTCACAAAT+GGG - chr2_3:48430681-48430700 Msa0295740:five_prime_UTR 30.0%
!!! AGGATTTTGAGATCCAATTG+GGG + chr2_3:48425655-48425674 None:intergenic 35.0%
!!! GAGGATTTTGAGATCCAATT+GGG + chr2_3:48425656-48425675 None:intergenic 35.0%
!!! GAAGGGCATTTTCATTGAAA+TGG - chr2_3:48425734-48425753 Msa0295740:CDS 35.0%
TTGAGATTGAGATTGGGATT+GGG + chr2_3:48425765-48425784 None:intergenic 35.0%
!!! GGTTTGTTCATGGTTTTAAG+GGG + chr2_3:48425791-48425810 None:intergenic 35.0%
!!! GGGTTTGTTCATGGTTTTAA+GGG + chr2_3:48425792-48425811 None:intergenic 35.0%
!! TGGGTTTGTTCATGGTTTTA+AGG + chr2_3:48425793-48425812 None:intergenic 35.0%
! AATGAGAATGGGTTTGTTCA+TGG + chr2_3:48425801-48425820 None:intergenic 35.0%
GTCTTCTTGAGAAATGAGAA+TGG + chr2_3:48425813-48425832 None:intergenic 35.0%
! AATCTTGTTGGTCTAGTTGT+TGG + chr2_3:48425859-48425878 None:intergenic 35.0%
CCATATGTCGTAACTGTTAA+GGG + chr2_3:48426011-48426030 None:intergenic 35.0%
TCCATATGTCGTAACTGTTA+AGG + chr2_3:48426012-48426031 None:intergenic 35.0%
ACTCGTCTTCTTCAAACTAT+TGG - chr2_3:48426064-48426083 Msa0295740:CDS 35.0%
ATATTCCGATCCAAATCTGA+CGG - chr2_3:48426142-48426161 Msa0295740:CDS 35.0%
! TCTTCTAGAAGAAGTCATTC+CGG - chr2_3:48426286-48426305 Msa0295740:intron 35.0%
GTGAAAGAAGTTAGAGAAGA+TGG - chr2_3:48426436-48426455 Msa0295740:CDS 35.0%
AAGTTAGAGAAGATGGAATG+TGG - chr2_3:48426443-48426462 Msa0295740:CDS 35.0%
TGGAATGTGGAATAAAGTGA+AGG - chr2_3:48426456-48426475 Msa0295740:CDS 35.0%
AATGTGGAATAAAGTGAAGG+AGG - chr2_3:48426459-48426478 Msa0295740:CDS 35.0%
! TATGGAGGAATTTGAGATGA+CGG - chr2_3:48426504-48426523 Msa0295740:intron 35.0%
CAAGAGATTCAAGCTCATAA+TGG - chr2_3:48426877-48426896 Msa0295740:intron 35.0%
AGGATTGTGTGATTCATGTT+TGG - chr2_3:48426956-48426975 Msa0295740:CDS 35.0%
! ATGACCTTTAAAGGAGCAAA+CGG + chr2_3:48427214-48427233 None:intergenic 35.0%
!!! TCAGGTTAGCTTCTGTTTTT+TGG - chr2_3:48427269-48427288 Msa0295740:intron 35.0%
!!! CATCGTTGGCTTTTGTTAAA+AGG - chr2_3:48427377-48427396 Msa0295740:intron 35.0%
AAGCCAATTCATCAGTTCAT+CGG + chr2_3:48427417-48427436 None:intergenic 35.0%
!! AGTTTTAGTGACTCTCCTTT+CGG - chr2_3:48427681-48427700 Msa0295740:intron 35.0%
AGTCTTAAAAACCTGTACTG+TGG - chr2_3:48427716-48427735 Msa0295740:intron 35.0%
GTCTTAAAAACCTGTACTGT+GGG - chr2_3:48427717-48427736 Msa0295740:intron 35.0%
TGTCACAGTGAAAAGATTTC+TGG - chr2_3:48427756-48427775 Msa0295740:intron 35.0%
GGATGGTTATTTGTAACTTG+GGG - chr2_3:48428105-48428124 Msa0295740:intron 35.0%
! TCAAACACATTTGTTGAGCT+GGG + chr2_3:48428274-48428293 None:intergenic 35.0%
! TTCAAACACATTTGTTGAGC+TGG + chr2_3:48428275-48428294 None:intergenic 35.0%
TCGTAACATTGAATGTGAAG+TGG + chr2_3:48428342-48428361 None:intergenic 35.0%
AGGTTTGGATCCTATTAAAG+AGG - chr2_3:48428427-48428446 Msa0295740:intron 35.0%
GGTTTGGATCCTATTAAAGA+GGG - chr2_3:48428428-48428447 Msa0295740:intron 35.0%
GTTTGGATCCTATTAAAGAG+GGG - chr2_3:48428429-48428448 Msa0295740:intron 35.0%
!!! GGTTTTTTCCCCTCTTTAAT+AGG + chr2_3:48428440-48428459 None:intergenic 35.0%
TCTCCAATGTAAACTAAAGG+GGG + chr2_3:48428503-48428522 None:intergenic 35.0%
CTCTCCAATGTAAACTAAAG+GGG + chr2_3:48428504-48428523 None:intergenic 35.0%
CCTCTCCAATGTAAACTAAA+GGG + chr2_3:48428505-48428524 None:intergenic 35.0%
TCCTCTCCAATGTAAACTAA+AGG + chr2_3:48428506-48428525 None:intergenic 35.0%
CCTTATTGTTATGGTAACAC+CGG - chr2_3:48428569-48428588 Msa0295740:intron 35.0%
TTTGAATAGATTCTTTGGGC+AGG - chr2_3:48428686-48428705 Msa0295740:intron 35.0%
TTGAATAGATTCTTTGGGCA+GGG - chr2_3:48428687-48428706 Msa0295740:intron 35.0%
TACAAGGATGATCTAAACAC+TGG + chr2_3:48428838-48428857 None:intergenic 35.0%
GCATATAGGACAAGTTATAC+AGG - chr2_3:48429254-48429273 Msa0295740:CDS 35.0%
CCTAAATTTAACCACCCTAT+AGG + chr2_3:48429293-48429312 None:intergenic 35.0%
CCTATAGGGTGGTTAAATTT+AGG - chr2_3:48429290-48429309 Msa0295740:CDS 35.0%
CTTAGTTAAATTGTCTGTGC+AGG - chr2_3:48429624-48429643 Msa0295740:CDS 35.0%
!! CAAGAAAATTACTGGTTTCC+AGG - chr2_3:48429871-48429890 Msa0295740:CDS 35.0%
AACTGATGTAAGTTTCTTGC+AGG - chr2_3:48430188-48430207 Msa0295740:CDS 35.0%
ATATATTGTTGCTGCAAGTG+AGG - chr2_3:48430262-48430281 Msa0295740:CDS 35.0%
! GACATGCATGATACATTTTC+TGG - chr2_3:48430428-48430447 Msa0295740:CDS 35.0%
TCGATAGAATTTCTGCAACA+TGG - chr2_3:48430612-48430631 Msa0295740:CDS 35.0%
! GCTAGAAGAAGTTTTTCTTC+CGG + chr2_3:48430638-48430657 None:intergenic 35.0%
GTCAGTATGGATTTCACAAA+TGG - chr2_3:48430680-48430699 Msa0295740:five_prime_UTR 35.0%
CAGTATGGATTTCACAAATG+GGG - chr2_3:48430682-48430701 Msa0295740:five_prime_UTR 35.0%
TAAGTCAAAAAATGTCAGCC+TGG - chr2_3:48430705-48430724 Msa0295740:five_prime_UTR 35.0%
AAGTCAAAAAATGTCAGCCT+GGG - chr2_3:48430706-48430725 Msa0295740:five_prime_UTR 35.0%
! GAAGTGGCAATCCAAAATTT+TGG + chr2_3:48430778-48430797 None:intergenic 35.0%
ATGGTCTCTTATATTCGAAG+TGG + chr2_3:48430794-48430813 None:intergenic 35.0%
TGTATGACTATATGTCACAG+CGG - chr2_3:48430822-48430841 Msa0295740:five_prime_UTR 35.0%
GTTTGTGTATGGTGAGAGAT+TGG + chr2_3:48425571-48425590 None:intergenic 40.0%
AAATTTCACACTCCCCCAAT+TGG - chr2_3:48425639-48425658 Msa0295740:intron 40.0%
!!! GGATTTTGAGATCCAATTGG+GGG + chr2_3:48425654-48425673 None:intergenic 40.0%
!!! GGAGGATTTTGAGATCCAAT+TGG + chr2_3:48425657-48425676 None:intergenic 40.0%
AACCACACTAACATTTGCTC+AGG - chr2_3:48425711-48425730 Msa0295740:CDS 40.0%
ACCACACTAACATTTGCTCA+GGG - chr2_3:48425712-48425731 Msa0295740:CDS 40.0%
ACTAACATTTGCTCAGGGAA+GGG - chr2_3:48425717-48425736 Msa0295740:CDS 40.0%
GTTGAGATTGAGATTGGGAT+TGG + chr2_3:48425766-48425785 None:intergenic 40.0%
GGGTTGTTGAGATTGAGATT+GGG + chr2_3:48425771-48425790 None:intergenic 40.0%
! GTTGATGTTGTTGTTGGAGT+TGG + chr2_3:48425835-48425854 None:intergenic 40.0%
!! GTTGGTGTTGATGTTGTTGT+TGG + chr2_3:48425841-48425860 None:intergenic 40.0%
AAGAGGAGAGAGAGAGTAAA+CGG + chr2_3:48425901-48425920 None:intergenic 40.0%
! TTTCTTGGTCTTCGTCTTCT+TGG + chr2_3:48425952-48425971 None:intergenic 40.0%
CCCTTAACAGTTACGACATA+TGG - chr2_3:48426008-48426027 Msa0295740:CDS 40.0%
GGAATATGGCATTGTAAGGT+GGG + chr2_3:48426129-48426148 None:intergenic 40.0%
GATCGGAATATGGCATTGTA+AGG + chr2_3:48426133-48426152 None:intergenic 40.0%
GTCAGATTTGGATCGGAATA+TGG + chr2_3:48426143-48426162 None:intergenic 40.0%
TATGACCGTCAGATTTGGAT+CGG + chr2_3:48426150-48426169 None:intergenic 40.0%
GTTGTTATGACCGTCAGATT+TGG + chr2_3:48426155-48426174 None:intergenic 40.0%
CTAGAAGAATTCTTTCCGGA+CGG + chr2_3:48426274-48426293 None:intergenic 40.0%
TGGAATAAAGTGAAGGAGGT+TGG - chr2_3:48426463-48426482 Msa0295740:intron 40.0%
GGAAATGGGAGTAATGGTAA+TGG - chr2_3:48426607-48426626 Msa0295740:CDS 40.0%
!! AATGGGAGTAATGGTAATGG+AGG - chr2_3:48426610-48426629 Msa0295740:CDS 40.0%
!! TGGTAATGGAGGTTGTTCTA+AGG - chr2_3:48426621-48426640 Msa0295740:CDS 40.0%
!! GGTAATGGAGGTTGTTCTAA+GGG - chr2_3:48426622-48426641 Msa0295740:CDS 40.0%
! GTAATGGAGGTTGTTCTAAG+GGG - chr2_3:48426623-48426642 Msa0295740:CDS 40.0%
!! TGTTCTAAGGGGAAGAAGAA+AGG - chr2_3:48426634-48426653 Msa0295740:intron 40.0%
!! CAAGAGTGTTGCTAGTTCAA+TGG - chr2_3:48426678-48426697 Msa0295740:intron 40.0%
TGATGAGAGAGATACTTCGT+CGG - chr2_3:48426726-48426745 Msa0295740:intron 40.0%
CTACGGATGATAGTCAAGAT+GGG - chr2_3:48426776-48426795 Msa0295740:CDS 40.0%
AGTCAAGATGGGTCATTTCA+TGG - chr2_3:48426787-48426806 Msa0295740:CDS 40.0%
TTGTGTGATTCATGTTTGGC+AGG - chr2_3:48426960-48426979 Msa0295740:CDS 40.0%
! GTTGTTGCTTATGGAGAAAC+AGG - chr2_3:48427008-48427027 Msa0295740:CDS 40.0%
! ATTTCTTGTTAATGGGTCGC+CGG - chr2_3:48427053-48427072 Msa0295740:intron 40.0%
ACTCAACGACTTCCTACTAA+CGG + chr2_3:48427142-48427161 None:intergenic 40.0%
TAGTAGGAAGTCGTTGAGTT+TGG - chr2_3:48427143-48427162 Msa0295740:intron 40.0%
AGTGAGTGCAAACACATGTT+CGG + chr2_3:48427184-48427203 None:intergenic 40.0%
AAACCCGTTTGCTCCTTTAA+AGG - chr2_3:48427207-48427226 Msa0295740:intron 40.0%
! TGACCTTTAAAGGAGCAAAC+GGG + chr2_3:48427213-48427232 None:intergenic 40.0%
TCACTCTTATATGGCATCGT+TGG - chr2_3:48427363-48427382 Msa0295740:intron 40.0%
TGACCGATGAACTGATGAAT+TGG - chr2_3:48427411-48427430 Msa0295740:intron 40.0%
!! TGGGTGGAATTGTTTTCAAG+TGG - chr2_3:48427502-48427521 Msa0295740:CDS 40.0%
!!! TTGTTTTCAAGTGGCTGAAC+AGG - chr2_3:48427511-48427530 Msa0295740:CDS 40.0%
ACTGCAATAATGCAACCGAA+AGG + chr2_3:48427699-48427718 None:intergenic 40.0%
TTGTGATTCTAGGCCTTTCT+TGG - chr2_3:48427878-48427897 Msa0295740:intron 40.0%
AAATGCCGTCTTTCCAAGAA+AGG + chr2_3:48427894-48427913 None:intergenic 40.0%
TGCTTTAGTGAACTGTGATG+TGG - chr2_3:48428041-48428060 Msa0295740:intron 40.0%
AAGCGGTAACTTACTTAGGA+TGG - chr2_3:48428088-48428107 Msa0295740:intron 40.0%
TGGTTATTTGTAACTTGGGG+TGG - chr2_3:48428108-48428127 Msa0295740:intron 40.0%
GGTTATTTGTAACTTGGGGT+GGG - chr2_3:48428109-48428128 Msa0295740:intron 40.0%
GTTATTTGTAACTTGGGGTG+GGG - chr2_3:48428110-48428129 Msa0295740:intron 40.0%
! CAAACACATTTGTTGAGCTG+GGG + chr2_3:48428273-48428292 None:intergenic 40.0%
GTAAACTAAAGGGGGAAGTT+TGG + chr2_3:48428495-48428514 None:intergenic 40.0%
! CTTCCCCCTTTAGTTTACAT+TGG - chr2_3:48428497-48428516 Msa0295740:intron 40.0%
! CCCTTTAGTTTACATTGGAG+AGG - chr2_3:48428502-48428521 Msa0295740:intron 40.0%
!! CCGGTGTTACCATAACAATA+AGG + chr2_3:48428572-48428591 None:intergenic 40.0%
TATTGTTATGGTAACACCGG+TGG - chr2_3:48428572-48428591 Msa0295740:intron 40.0%
ATTGTTATGGTAACACCGGT+GGG - chr2_3:48428573-48428592 Msa0295740:intron 40.0%
TGAATAGATTCTTTGGGCAG+GGG - chr2_3:48428688-48428707 Msa0295740:intron 40.0%
CTTCAATGGACAAAACAGTG+CGG - chr2_3:48428897-48428916 Msa0295740:intron 40.0%
ATGACTGCAACTCAGGTTTA+GGG + chr2_3:48429029-48429048 None:intergenic 40.0%
GAATCAGATTGGATAGGGAT+AGG + chr2_3:48429170-48429189 None:intergenic 40.0%
! TTTGAGACCAATTATGCGCA+AGG - chr2_3:48429201-48429220 Msa0295740:CDS 40.0%
AATTGTGCCTTGCGCATAAT+TGG + chr2_3:48429211-48429230 None:intergenic 40.0%
AAAAAAAACGGAGGGAACGA+GGG + chr2_3:48429334-48429353 None:intergenic 40.0%
GTTTCTATCTGCTTTCTGTC+TGG - chr2_3:48429377-48429396 Msa0295740:CDS 40.0%
! TAGTGGATCTTTGGATGCTA+AGG - chr2_3:48429448-48429467 Msa0295740:CDS 40.0%
CAATCAACAACTTGTCGATC+CGG + chr2_3:48429491-48429510 None:intergenic 40.0%
TTGGATCGATCTTCATGAGA+TGG - chr2_3:48429508-48429527 Msa0295740:CDS 40.0%
TTGTTATACACCTGATGGTC+AGG - chr2_3:48429541-48429560 Msa0295740:CDS 40.0%
! TGCACTAGTTGGTTCATACA+AGG - chr2_3:48429648-48429667 Msa0295740:CDS 40.0%
! GCACTAGTTGGTTCATACAA+GGG - chr2_3:48429649-48429668 Msa0295740:CDS 40.0%
AATACATCTGGTACTGTCAG+AGG - chr2_3:48429688-48429707 Msa0295740:CDS 40.0%
! TTTTATGAACAGTTTGCCCC+AGG - chr2_3:48429963-48429982 Msa0295740:CDS 40.0%
TACTTCTGATGAACTTCCTG+GGG + chr2_3:48429982-48430001 None:intergenic 40.0%
GTACTTCTGATGAACTTCCT+GGG + chr2_3:48429983-48430002 None:intergenic 40.0%
AGTACTTCTGATGAACTTCC+TGG + chr2_3:48429984-48430003 None:intergenic 40.0%
!! CATCTGCTGATTCTCGAATA+CGG - chr2_3:48430009-48430028 Msa0295740:CDS 40.0%
!! ATCTGCTGATTCTCGAATAC+GGG - chr2_3:48430010-48430029 Msa0295740:CDS 40.0%
!! GGTTGTTGATGGTATTGATC+TGG - chr2_3:48430031-48430050 Msa0295740:CDS 40.0%
TCAGTTTGATCAGCACGAAT+TGG + chr2_3:48430174-48430193 None:intergenic 40.0%
AGGATTCCCATGTATACATC+TGG - chr2_3:48430282-48430301 Msa0295740:CDS 40.0%
GTGACACCTTTACTTCTGTT+GGG + chr2_3:48430329-48430348 None:intergenic 40.0%
ATGTTCATAGGACTGTGTCA+CGG + chr2_3:48430351-48430370 None:intergenic 40.0%
! AAGTTTTCCTCTACAGGTGT+AGG + chr2_3:48430509-48430528 None:intergenic 40.0%
ACACCTGTAGAGGAAAACTT+CGG - chr2_3:48430509-48430528 Msa0295740:CDS 40.0%
TAGAATTTCTGCAACATGGC+CGG - chr2_3:48430616-48430635 Msa0295740:CDS 40.0%
TGAAATCCATACTGACACGA+GGG + chr2_3:48430676-48430695 None:intergenic 40.0%
AGTCAAAAAATGTCAGCCTG+GGG - chr2_3:48430707-48430726 Msa0295740:five_prime_UTR 40.0%
! TTTTTGCCAGCTTATGGAGA+AGG + chr2_3:48430887-48430906 None:intergenic 40.0%
! TACAGGTTTTTGCCAGCTTA+TGG + chr2_3:48430893-48430912 None:intergenic 40.0%
TCCCTGAGCAAATGTTAGTG+TGG + chr2_3:48425716-48425735 None:intergenic 45.0%
CACTAACATTTGCTCAGGGA+AGG - chr2_3:48425716-48425735 Msa0295740:CDS 45.0%
GGGGTTGTTGAGATTGAGAT+TGG + chr2_3:48425772-48425791 None:intergenic 45.0%
TTCTTGGTCAGAGTTGGAGT+TGG + chr2_3:48425936-48425955 None:intergenic 45.0%
TTCGTCTTCTTGGTCAGAGT+TGG + chr2_3:48425942-48425961 None:intergenic 45.0%
!! ACGAGTACGACGTTCTGAAA+CGG + chr2_3:48426050-48426069 None:intergenic 45.0%
ACCACGTGAAAGGGCAAAAT+CGG + chr2_3:48426098-48426117 None:intergenic 45.0%
GATTGGGTTACCACGTGAAA+GGG + chr2_3:48426107-48426126 None:intergenic 45.0%
TGGCATTGTAAGGTGGGATT+GGG + chr2_3:48426123-48426142 None:intergenic 45.0%
ATGGCATTGTAAGGTGGGAT+TGG + chr2_3:48426124-48426143 None:intergenic 45.0%
CGGAATATGGCATTGTAAGG+TGG + chr2_3:48426130-48426149 None:intergenic 45.0%
AGTACTGTTCCCGGTAATTC+TGG - chr2_3:48426229-48426248 Msa0295740:intron 45.0%
!! TTCCGGTGTTGATTTCTTGC+CGG - chr2_3:48426303-48426322 Msa0295740:intron 45.0%
GGCAAAGTAGAAGAATTCCC+CGG + chr2_3:48426325-48426344 None:intergenic 45.0%
GGGGAATTCTTCTACTTTGC+CGG - chr2_3:48426324-48426343 Msa0295740:intron 45.0%
TTCTTCTACTTTGCCGGACA+CGG - chr2_3:48426330-48426349 Msa0295740:intron 45.0%
CATTCTATTTCACCCGTGTC+CGG + chr2_3:48426346-48426365 None:intergenic 45.0%
!! AAAGTGAAGGAGGTTGGTAC+TGG - chr2_3:48426469-48426488 Msa0295740:intron 45.0%
!! AAGTGAAGGAGGTTGGTACT+GGG - chr2_3:48426470-48426489 Msa0295740:intron 45.0%
TACTGGGAGACAGTTGACTA+TGG - chr2_3:48426486-48426505 Msa0295740:intron 45.0%
! GAGGAATTTGAGATGACGGT+TGG - chr2_3:48426508-48426527 Msa0295740:intron 45.0%
! GGTGTTGGAAATGGGAGTAA+TGG - chr2_3:48426601-48426620 Msa0295740:CDS 45.0%
TCTAAGGGGAAGAAGAAAGG+AGG - chr2_3:48426637-48426656 Msa0295740:intron 45.0%
CTAAGGGGAAGAAGAAAGGA+GGG - chr2_3:48426638-48426657 Msa0295740:intron 45.0%
! GAGTGTTGCTAGTTCAATGG+CGG - chr2_3:48426681-48426700 Msa0295740:intron 45.0%
! AGTGTTGCTAGTTCAATGGC+GGG - chr2_3:48426682-48426701 Msa0295740:intron 45.0%
!! TAGTTCAATGGCGGGTCATA+AGG - chr2_3:48426690-48426709 Msa0295740:intron 45.0%
AGAGATACTTCGTCGGAGAA+AGG - chr2_3:48426733-48426752 Msa0295740:intron 45.0%
GCTACGGATGATAGTCAAGA+TGG - chr2_3:48426775-48426794 Msa0295740:CDS 45.0%
GTCATTTCATGGACCTGAGA+GGG - chr2_3:48426798-48426817 Msa0295740:intron 45.0%
AGGGTGAGAGTGAGACAATA+TGG - chr2_3:48426817-48426836 Msa0295740:intron 45.0%
GGGTGAGAGTGAGACAATAT+GGG - chr2_3:48426818-48426837 Msa0295740:intron 45.0%
GGGAAATATCTTGCTAGTGC+TGG - chr2_3:48426931-48426950 Msa0295740:CDS 45.0%
!! ATATCTTGCTAGTGCTGGTG+AGG - chr2_3:48426936-48426955 Msa0295740:CDS 45.0%
GATTCATGTTTGGCAGGTTG+TGG - chr2_3:48426966-48426985 Msa0295740:CDS 45.0%
TTGTGGAGTCTGAGAGGAAA+GGG - chr2_3:48426983-48427002 Msa0295740:CDS 45.0%
! GAAAGGGGAGTTGTTGCTTA+TGG - chr2_3:48426999-48427018 Msa0295740:CDS 45.0%
GTTGCTTATGGAGAAACAGG+AGG - chr2_3:48427011-48427030 Msa0295740:CDS 45.0%
! TCCTTTGGCGGATAATCTTC+TGG - chr2_3:48427092-48427111 Msa0295740:intron 45.0%
TCCAGAAGATTATCCGCCAA+AGG + chr2_3:48427096-48427115 None:intergenic 45.0%
! TCTTCTGGAGAGGAAGAGAA+AGG - chr2_3:48427107-48427126 Msa0295740:intron 45.0%
! CTTCTGGAGAGGAAGAGAAA+GGG - chr2_3:48427108-48427127 Msa0295740:intron 45.0%
! TTCTGGAGAGGAAGAGAAAG+GGG - chr2_3:48427109-48427128 Msa0295740:intron 45.0%
GTTGAGTTTGGACCAGTTTG+TGG - chr2_3:48427155-48427174 Msa0295740:intron 45.0%
GTGAGTGCAAACACATGTTC+GGG + chr2_3:48427183-48427202 None:intergenic 45.0%
ATGATGTGCTTGACCTCTCT+TGG - chr2_3:48427238-48427257 Msa0295740:intron 45.0%
! GCTGAGTGTTTTCGATGACT+TGG - chr2_3:48427315-48427334 Msa0295740:intron 45.0%
GAATCACAACGTAACTCCGT+TGG + chr2_3:48427867-48427886 None:intergenic 45.0%
CGGAGTTACGTTGTGATTCT+AGG - chr2_3:48427868-48427887 Msa0295740:intron 45.0%
CTAGGCCTTTCTTGGAAAGA+CGG - chr2_3:48427886-48427905 Msa0295740:intron 45.0%
GAGGCAACTTACACACAACA+TGG - chr2_3:48427931-48427950 Msa0295740:intron 45.0%
TTCTTTGGGCAGGGGTTTAT+TGG - chr2_3:48428696-48428715 Msa0295740:intron 45.0%
GCACTTGCTCTCATCTTCAA+TGG - chr2_3:48428883-48428902 Msa0295740:intron 45.0%
CATGACTGCAACTCAGGTTT+AGG + chr2_3:48429030-48429049 None:intergenic 45.0%
AACCTGAGTTGCAGTCATGT+AGG - chr2_3:48429031-48429050 Msa0295740:intron 45.0%
GAAAAAAAACGGAGGGAACG+AGG + chr2_3:48429335-48429354 None:intergenic 45.0%
TGGATGCTAAGGTTCGCATA+TGG - chr2_3:48429459-48429478 Msa0295740:CDS 45.0%
CGGATCGACAAGTTGTTGAT+TGG - chr2_3:48429489-48429508 Msa0295740:CDS 45.0%
!! GCTGCTTGTTATACACCTGA+TGG - chr2_3:48429536-48429555 Msa0295740:CDS 45.0%
TATACACCTGATGGTCAGGT+TGG - chr2_3:48429545-48429564 Msa0295740:CDS 45.0%
ATTCTGACAATTGTGGCCAC+TGG - chr2_3:48429758-48429777 Msa0295740:CDS 45.0%
! TCTCGAATACGGGTTGTTGA+TGG - chr2_3:48430020-48430039 Msa0295740:CDS 45.0%
!! TTTACCATTTGCTGTGAGGG+AGG + chr2_3:48430243-48430262 None:intergenic 45.0%
GGAAAAATGAAGCCGATTGC+AGG - chr2_3:48430303-48430322 Msa0295740:CDS 45.0%
GGTGACACCTTTACTTCTGT+TGG + chr2_3:48430330-48430349 None:intergenic 45.0%
GTCGTTGTTGCTATCAAGCT+CGG + chr2_3:48430462-48430481 None:intergenic 45.0%
TACAGGTGTAGGAGGATGAT+TGG + chr2_3:48430498-48430517 None:intergenic 45.0%
! TTTTCCTCTACAGGTGTAGG+AGG + chr2_3:48430506-48430525 None:intergenic 45.0%
! ACACCGAAGTTTTCCTCTAC+AGG + chr2_3:48430515-48430534 None:intergenic 45.0%
GTGAAATCCATACTGACACG+AGG + chr2_3:48430677-48430696 None:intergenic 45.0%
AAAAATGTCAGCCTGGGGTA+TGG - chr2_3:48430712-48430731 Msa0295740:five_prime_UTR 45.0%
AGTAACAATCACCATACCCC+AGG + chr2_3:48430726-48430745 None:intergenic 45.0%
GGTATGGTGATTGTTACTGC+TGG - chr2_3:48430728-48430747 Msa0295740:five_prime_UTR 45.0%
!! ATTGTTACTGCTGGTCTTCG+AGG - chr2_3:48430737-48430756 Msa0295740:five_prime_UTR 45.0%
!! CGAGTTGATATCAGCTCAGA+AGG - chr2_3:48430849-48430868 Msa0295740:five_prime_UTR 45.0%
AGATCACCTTCTCCATAAGC+TGG - chr2_3:48430878-48430897 Msa0295740:five_prime_UTR 45.0%
! AGAGATTGGAGCGAGGTGTT+GGG + chr2_3:48425557-48425576 None:intergenic 50.0%
TATGGTGAGAGATTGGAGCG+AGG + chr2_3:48425564-48425583 None:intergenic 50.0%
GTTGGAACAAGAGCAGGAAG+AGG + chr2_3:48425918-48425937 None:intergenic 50.0%
GTTGGAGTTGGAACAAGAGC+AGG + chr2_3:48425924-48425943 None:intergenic 50.0%
!! CGACGTTCTGAAACGGAAGA+AGG + chr2_3:48426043-48426062 None:intergenic 50.0%
! TCCGATTTTGCCCTTTCACG+TGG - chr2_3:48426094-48426113 Msa0295740:CDS 50.0%
GGATTGGGTTACCACGTGAA+AGG + chr2_3:48426108-48426127 None:intergenic 50.0%
ACTGTTCCCGGTAATTCTGG+CGG - chr2_3:48426232-48426251 Msa0295740:intron 50.0%
GAAGAATTCTTTCCGGACGG+AGG + chr2_3:48426271-48426290 None:intergenic 50.0%
!! TCCGGTGTTGATTTCTTGCC+GGG - chr2_3:48426304-48426323 Msa0295740:intron 50.0%
TCTTCTACTTTGCCGGACAC+GGG - chr2_3:48426331-48426350 Msa0295740:intron 50.0%
TGGGAGACAGTTGACTATGG+AGG - chr2_3:48426489-48426508 Msa0295740:intron 50.0%
TGGTCAATCTCCGATTGTGC+AGG - chr2_3:48426528-48426547 Msa0295740:intron 50.0%
CGCATAAGCTCCTGCACAAT+CGG + chr2_3:48426541-48426560 None:intergenic 50.0%
GGAAGAAGAAAGGAGGGAGT+TGG - chr2_3:48426644-48426663 Msa0295740:intron 50.0%
GATACTTCGTCGGAGAAAGG+CGG - chr2_3:48426736-48426755 Msa0295740:intron 50.0%
ATACTTCGTCGGAGAAAGGC+GGG - chr2_3:48426737-48426756 Msa0295740:intron 50.0%
GGTCATTTCATGGACCTGAG+AGG - chr2_3:48426797-48426816 Msa0295740:intron 50.0%
GTTGTGGAGTCTGAGAGGAA+AGG - chr2_3:48426982-48427001 Msa0295740:CDS 50.0%
TGTGGAGTCTGAGAGGAAAG+GGG - chr2_3:48426984-48427003 Msa0295740:CDS 50.0%
! TGGCGGATAATCTTCTGGAG+AGG - chr2_3:48427097-48427116 Msa0295740:intron 50.0%
CATGTTCGGGAACCACAAAC+TGG + chr2_3:48427170-48427189 None:intergenic 50.0%
CCTGAGACTTAGACCAAGAG+AGG + chr2_3:48427254-48427273 None:intergenic 50.0%
CCTCTCTTGGTCTAAGTCTC+AGG - chr2_3:48427251-48427270 Msa0295740:intron 50.0%
AAGTGGCTGAACAGGCATCA+AGG - chr2_3:48427519-48427538 Msa0295740:CDS 50.0%
AGTGGCTGAACAGGCATCAA+GGG - chr2_3:48427520-48427539 Msa0295740:CDS 50.0%
CCTACTTGTTCCCACAGTAC+AGG + chr2_3:48427730-48427749 None:intergenic 50.0%
CCTGTACTGTGGGAACAAGT+AGG - chr2_3:48427727-48427746 Msa0295740:intron 50.0%
! GGTTCGCATATGGAGCATTC+CGG - chr2_3:48429469-48429488 Msa0295740:CDS 50.0%
CTTGAACCAACCTGACCATC+AGG + chr2_3:48429554-48429573 None:intergenic 50.0%
!! CTGATGGTCAGGTTGGTTCA+AGG - chr2_3:48429552-48429571 Msa0295740:CDS 50.0%
ACTTCTGTTGGGCCTGCAAT+CGG + chr2_3:48430318-48430337 None:intergenic 50.0%
TGCAGGCCCAACAGAAGTAA+AGG - chr2_3:48430320-48430339 Msa0295740:CDS 50.0%
ATGTGTCAGTAGCCATTCCC+TGG - chr2_3:48430384-48430403 Msa0295740:CDS 50.0%
TCATCCTCCTACACCTGTAG+AGG - chr2_3:48430499-48430518 Msa0295740:CDS 50.0%
!! AGAGGAAAACTTCGGTGTCG+AGG - chr2_3:48430517-48430536 Msa0295740:CDS 50.0%
!! GAGGAAAACTTCGGTGTCGA+GGG - chr2_3:48430518-48430537 Msa0295740:CDS 50.0%
ACTGTTTGTCGCACTCGCAA+TGG + chr2_3:48430585-48430604 None:intergenic 50.0%
TCAAAGCCCTCGTGTCAGTA+TGG - chr2_3:48430667-48430686 Msa0295740:five_prime_UTR 50.0%
!! GAGATTGGAGCGAGGTGTTG+GGG + chr2_3:48425556-48425575 None:intergenic 55.0%
GAGAGATTGGAGCGAGGTGT+TGG + chr2_3:48425558-48425577 None:intergenic 55.0%
TTTCCGGACGGAGGTTTAGC+CGG + chr2_3:48426262-48426281 None:intergenic 55.0%
CCCCGGCAAGAAATCAACAC+CGG + chr2_3:48426308-48426327 None:intergenic 55.0%
!! CCGGTGTTGATTTCTTGCCG+GGG - chr2_3:48426305-48426324 Msa0295740:intron 55.0%
TTGTGCAGGAGCTTATGCGC+CGG - chr2_3:48426542-48426561 Msa0295740:intron 55.0%
! TATGCGCCGGCAGAATCATG+AGG - chr2_3:48426555-48426574 Msa0295740:intron 55.0%
CGGTCTCCTCATGATTCTGC+CGG + chr2_3:48426564-48426583 None:intergenic 55.0%
CGGCAGAATCATGAGGAGAC+CGG - chr2_3:48426562-48426581 Msa0295740:intron 55.0%
CCCATTTCCAACACCACCAC+CGG + chr2_3:48426596-48426615 None:intergenic 55.0%
! CCGGTGGTGGTGTTGGAAAT+GGG - chr2_3:48426593-48426612 Msa0295740:CDS 55.0%
!! CAATGGCGGGTCATAAGGAG+AGG - chr2_3:48426695-48426714 Msa0295740:intron 55.0%
TGTCTCACTCTCACCCTCTC+AGG + chr2_3:48426814-48426833 None:intergenic 55.0%
ACCCGTGACGTTGTCTCCTT+TGG - chr2_3:48427077-48427096 Msa0295740:intron 55.0%
GCCAAAGGAGACAACGTCAC+GGG + chr2_3:48427081-48427100 None:intergenic 55.0%
CGCCAAAGGAGACAACGTCA+CGG + chr2_3:48427082-48427101 None:intergenic 55.0%
CGTGACGTTGTCTCCTTTGG+CGG - chr2_3:48427080-48427099 Msa0295740:intron 55.0%
TGGAGAGGAAGAGAAAGGGG+AGG - chr2_3:48427112-48427131 Msa0295740:intron 55.0%
TGGACAAAACAGTGCGGCTG+TGG - chr2_3:48428903-48428922 Msa0295740:intron 55.0%
GGCCTACATGACTGCAACTC+AGG + chr2_3:48429036-48429055 None:intergenic 55.0%
TCTGTGCAGGGTGCACTAGT+TGG - chr2_3:48429637-48429656 Msa0295740:CDS 55.0%
CTGTGAGGGAGGCTGAAATC+TGG + chr2_3:48430232-48430251 None:intergenic 55.0%
TCAGCCTCCCTCACAGCAAA+TGG - chr2_3:48430236-48430255 Msa0295740:CDS 55.0%
GCCTGGTATGGGTGATGCAT+GGG - chr2_3:48430406-48430425 Msa0295740:CDS 55.0%
TCCCATGCATCACCCATACC+AGG + chr2_3:48430410-48430429 None:intergenic 55.0%
GAGGGTTCACGATCTGCTTC+AGG - chr2_3:48430536-48430555 Msa0295740:CDS 55.0%
CTCGCAATGGTTGCATGGTG+TGG + chr2_3:48430572-48430591 None:intergenic 55.0%
TCGCACTCGCAATGGTTGCA+TGG + chr2_3:48430577-48430596 None:intergenic 55.0%
!! TGGAGCGAGGTGTTGGGGTT+CGG + chr2_3:48425551-48425570 None:intergenic 60.0%
GGGGATCCGCCAGAATTACC+GGG + chr2_3:48426241-48426260 None:intergenic 60.0%
CGGGGATCCGCCAGAATTAC+CGG + chr2_3:48426242-48426261 None:intergenic 60.0%
! CGGTAATTCTGGCGGATCCC+CGG - chr2_3:48426240-48426259 Msa0295740:intron 60.0%
TTCCGGACGGAGGTTTAGCC+GGG + chr2_3:48426261-48426280 None:intergenic 60.0%
GAGGAGACCGGTGATGTAGC+CGG - chr2_3:48426574-48426593 Msa0295740:CDS 60.0%
! ACCACCACCGGCTACATCAC+CGG + chr2_3:48426584-48426603 None:intergenic 60.0%
! GATGTAGCCGGTGGTGGTGT+TGG - chr2_3:48426586-48426605 Msa0295740:CDS 60.0%
! GCCGGTGGTGGTGTTGGAAA+TGG - chr2_3:48426592-48426611 Msa0295740:CDS 60.0%
! TGGCGGGTCATAAGGAGAGG+AGG - chr2_3:48426698-48426717 Msa0295740:intron 60.0%
GGCAGGTTGTGGAGTCTGAG+AGG - chr2_3:48426977-48426996 Msa0295740:CDS 60.0%
GGAGACAACGTCACGGGTTC+CGG + chr2_3:48427075-48427094 None:intergenic 60.0%
AGGGGAGGTCGTCCGTTAGT+AGG - chr2_3:48427127-48427146 Msa0295740:intron 60.0%
GGTGCTCATGCTAGTCCCAC+CGG + chr2_3:48428591-48428610 None:intergenic 60.0%
! GGGACTAGCATGAGCACCTC+TGG - chr2_3:48428593-48428612 Msa0295740:intron 60.0%
TCAGTAGCCATTCCCTGGCC+TGG - chr2_3:48430389-48430408 Msa0295740:CDS 60.0%
AGCCATTCCCTGGCCTGGTA+TGG - chr2_3:48430394-48430413 Msa0295740:CDS 60.0%
GCCATTCCCTGGCCTGGTAT+GGG - chr2_3:48430395-48430414 Msa0295740:CDS 60.0%
ACCCATACCAGGCCAGGGAA+TGG + chr2_3:48430399-48430418 None:intergenic 60.0%
GCATCACCCATACCAGGCCA+GGG + chr2_3:48430404-48430423 None:intergenic 60.0%
TGCATCACCCATACCAGGCC+AGG + chr2_3:48430405-48430424 None:intergenic 60.0%
GGCCTGGTATGGGTGATGCA+TGG - chr2_3:48430405-48430424 Msa0295740:CDS 60.0%
TCCCCGGCTAAACCTCCGTC+CGG - chr2_3:48426256-48426275 Msa0295740:intron 65.0%
TCCGGACGGAGGTTTAGCCG+GGG + chr2_3:48426260-48426279 None:intergenic 65.0%
GAGACCGGTGATGTAGCCGG+TGG - chr2_3:48426577-48426596 Msa0295740:CDS 65.0%
ACCGGTGATGTAGCCGGTGG+TGG - chr2_3:48426580-48426599 Msa0295740:CDS 65.0%
CTTCGTCGGAGAAAGGCGGG+AGG - chr2_3:48426740-48426759 Msa0295740:intron 65.0%
GAGGAGGTCGAGCTCGGCTA+CGG - chr2_3:48426759-48426778 Msa0295740:CDS 65.0%
CGTCGGAGAAAGGCGGGAGG+AGG - chr2_3:48426743-48426762 Msa0295740:intron 70.0%
AGGCGGGAGGAGGTCGAGCT+CGG - chr2_3:48426753-48426772 Msa0295740:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 48425528 48430927 48425528 ID=Msa0295740;Name=Msa0295740
chr2_3 mRNA 48425528 48430927 48425528 ID=Msa0295740-mRNA-1;Parent=Msa0295740;Name=Msa0295740-mRNA-1;_AED=0.07;_eAED=0.07;_QI=272|0.85|0.75|1|1|1|8|0|861
chr2_3 exon 48425528 48425613 48425528 ID=Msa0295740-mRNA-1:exon:15219;Parent=Msa0295740-mRNA-1
chr2_3 exon 48425697 48426245 48425697 ID=Msa0295740-mRNA-1:exon:15218;Parent=Msa0295740-mRNA-1
chr2_3 exon 48426387 48426480 48426387 ID=Msa0295740-mRNA-1:exon:15217;Parent=Msa0295740-mRNA-1
chr2_3 exon 48426563 48426645 48426563 ID=Msa0295740-mRNA-1:exon:15216;Parent=Msa0295740-mRNA-1
chr2_3 exon 48426758 48426809 48426758 ID=Msa0295740-mRNA-1:exon:15215;Parent=Msa0295740-mRNA-1
chr2_3 exon 48426893 48427050 48426893 ID=Msa0295740-mRNA-1:exon:15214;Parent=Msa0295740-mRNA-1
chr2_3 exon 48427481 48427571 48427481 ID=Msa0295740-mRNA-1:exon:15213;Parent=Msa0295740-mRNA-1
chr2_3 exon 48429183 48430927 48429183 ID=Msa0295740-mRNA-1:exon:15212;Parent=Msa0295740-mRNA-1
chr2_3 five_prime_UTR 48430656 48430927 48430656 ID=Msa0295740-mRNA-1:five_prime_utr;Parent=Msa0295740-mRNA-1
chr2_3 CDS 48429183 48430655 48429183 ID=Msa0295740-mRNA-1:cds;Parent=Msa0295740-mRNA-1
chr2_3 CDS 48427481 48427571 48427481 ID=Msa0295740-mRNA-1:cds;Parent=Msa0295740-mRNA-1
chr2_3 CDS 48426893 48427050 48426893 ID=Msa0295740-mRNA-1:cds;Parent=Msa0295740-mRNA-1
chr2_3 CDS 48426758 48426809 48426758 ID=Msa0295740-mRNA-1:cds;Parent=Msa0295740-mRNA-1
chr2_3 CDS 48426563 48426645 48426563 ID=Msa0295740-mRNA-1:cds;Parent=Msa0295740-mRNA-1
chr2_3 CDS 48426387 48426480 48426387 ID=Msa0295740-mRNA-1:cds;Parent=Msa0295740-mRNA-1
chr2_3 CDS 48425697 48426245 48425697 ID=Msa0295740-mRNA-1:cds;Parent=Msa0295740-mRNA-1
chr2_3 CDS 48425528 48425613 48425528 ID=Msa0295740-mRNA-1:cds;Parent=Msa0295740-mRNA-1
Gene Sequence

>Msa0295740

ATGAACAAACCCATTCTCATTTCTCAAGAAGACCAACTCCAACAACAACATCAACACCAACAACTAGACCAACAAGATTTCTTCTACGAATCAAACGACCGTTTACTCTCTCTCTCCTCTTCCTGCTCTTGTTCCAACTCCAACTCTGACCAAGAAGACGAAGACCAAGAAAACAACAACAACAACAATAATTGTAATTACAATTTTGCCCTTAACAGTTACGACATATGGATCTCTCAACCTTCTTCCGTTTCAGAACGTCGTACTCGTCTTCTTCAAACTATTGGTCTCTCTTCCGATTTTGCCCTTTCACGTGGTAACCCAATCCCACCTTACAATGCCATATTCCGATCCAAATCTGACGGTCATAACAACAACAACAATTCTAACAACTCCTGTTTTATCTCTTCTTCTACTGTAAATGTAAATAGTACTGTTCCCGGTAATTCTGGCGGATCCCCGGCTAAACCTCCGTCCGGAAAGAATTCTTCTAGAAGAAGTCATTCCGGTGTTGATTTCTTGCCGGGGAATTCTTCTACTTTGCCGGACACGGGTGAAATAGAATGCGATGAAATTGAAAAAGGGGAAGAACAAGCTTGTACCATAAGAGATCTTGATAATGGAAAAGAATTTGTTGTGAAAGAAGTTAGAGAAGATGGAATGTGGAATAAAGTGAAGGAGGTTGGTACTGGGAGACAGTTGACTATGGAGGAATTTGAGATGACGGTTGGTCAATCTCCGATTGTGCAGGAGCTTATGCGCCGGCAGAATCATGAGGAGACCGGTGATGTAGCCGGTGGTGGTGTTGGAAATGGGAGTAATGGTAATGGAGGTTGTTCTAAGGGGAAGAAGAAAGGAGGGAGTTGGTTGAAGAGTATCAAGAGTGTTGCTAGTTCAATGGCGGGTCATAAGGAGAGGAGGAGTAGTGATGAGAGAGATACTTCGTCGGAGAAAGGCGGGAGGAGGTCGAGCTCGGCTACGGATGATAGTCAAGATGGGTCATTTCATGGACCTGAGAGGGTGAGAGTGAGACAATATGGGAAATCATGTAAAGAGTTAACTGCATTGTATAAGAGTCAAGAGATTCAAGCTCATAATGGATCAATTTGGAGTATTAAGTTTAGTTTAGATGGGAAATATCTTGCTAGTGCTGGTGAGGATTGTGTGATTCATGTTTGGCAGGTTGTGGAGTCTGAGAGGAAAGGGGAGTTGTTGCTTATGGAGAAACAGGAGGATGTTAATGTTAATATGTTATTTCTTGTTAATGGGTCGCCGGAACCCGTGACGTTGTCTCCTTTGGCGGATAATCTTCTGGAGAGGAAGAGAAAGGGGAGGTCGTCCGTTAGTAGGAAGTCGTTGAGTTTGGACCAGTTTGTGGTTCCCGAACATGTGTTTGCACTCACTGAAAAACCCGTTTGCTCCTTTAAAGGTCATTTGCATGATGTGCTTGACCTCTCTTGGTCTAAGTCTCAGCACTTGCTCTCATCTTCAATGGACAAAACAGTGCGGCTGTGGCATTTGTCTAGCAAGTCTTGTTTGAAGATTTTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCGGATCGACAAGTTGTTGATTGGATCGATCTTCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGGTGCACTAGTTGGTTCATACAAGGGTAGCTGTCATTTATATAATACATCTGAAAATAAGTTGCAACAGAAAAGTCAGATCAATCTGCAGAACAAGAAAAAGAAATCAAATCACAAGAAAATTACTGGTTTCCAGTTTGCCCCAGGAAGTTCATCAGAAGTACTTATCACATCTGCTGATTCTCGAATACGGGTTGTTGATGGTATTGATCTGGTTCATAAGTTTAAAGGCTTTCGAAATGCAAGTAGCCAGATTTCAGCCTCCCTCACAGCAAATGGTAAATATATTGTTGCTGCAAGTGAGGATTCCCATGTATACATCTGGAAAAATGAAGCCGATTGCAGGCCCAACAGAAGTAAAGGTGTCACCGTGACACAGTCCTATGAACATTTTCACTGTAAAGATGTGTCAGTAGCCATTCCCTGGCCTGGTATGGGTGATGCATGGGACATGCATGATACATTTTCTGGAGCACAAACCGAGCTTGATAGCAACAACGACGAAATCGCATCAGCCAATCATCCTCCTACACCTGTAGAGGAAAACTTCGGTGTCGAGGGTTCACGATCTGCTTCAGGTTATAATAGTCCACACCATGCAACCATTGCGAGTGCGACAAACAGTTACTTCTTCGATAGAATTTCTGCAACATGGCCGGAAGAAAAACTTCTTCTAGCTGCAAGAAATCAAAGCCCTCGTGTCAGTATGGATTTCACAAATGGGGTAAGTCAAAAAATGTCAGCCTGGGGTATGGTGATTGTTACTGCTGGTCTTCGAGCGGAGAGCGAGTTGATATCAGCTCAGAAGGCAGTTGAGATCACCTTCTCCATAAGCTGGCAAAAACCTGTACAGAAAAGTGAGTGA
Protein sequence

>Msa0295740

MNKPILISQEDQLQQQHQHQQLDQQDFFYESNDRLLSLSSSCSCSNSNSDQEDEDQENNNNNNNCNYNFALNSYDIWISQPSSVSERRTRLLQTIGLSSDFALSRGNPIPPYNAIFRSKSDGHNNNNNSNNSCFISSSTVNVNSTVPGNSGGSPAKPPSGKNSSRRSHSGVDFLPGNSSTLPDTGEIECDEIEKGEEQACTIRDLDNGKEFVVKEVREDGMWNKVKEVGTGRQLTMEEFEMTVGQSPIVQELMRRQNHEETGDVAGGGVGNGSNGNGGCSKGKKKGGSWLKSIKSVASSMAGHKERRSSDERDTSSEKGGRRSSSATDDSQDGSFHGPERVRVRQYGKSCKELTALYKSQEIQAHNGSIWSIKFSLDGKYLASAGEDCVIHVWQVVESERKGELLLMEKQEDVNVNMLFLVNGSPEPVTLSPLADNLLERKRKGRSSVSRKSLSLDQFVVPEHVFALTEKPVCSFKGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWIDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSNHKKITGFQFAPGSSSEVLITSADSRIRVVDGIDLVHKFKGFRNASSQISASLTANGKYIVAASEDSHVYIWKNEADCRPNRSKGVTVTQSYEHFHCKDVSVAIPWPGMGDAWDMHDTFSGAQTELDSNNDEIASANHPPTPVEENFGVEGSRSASGYNSPHHATIASATNSYFFDRISATWPEEKLLLAARNQSPRVSMDFTNGVSQKMSAWGMVIVTAGLRAESELISAQKAVEITFSISWQKPVQKSE*