AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0334270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0334270 MtrunA17_Chr2g0317931 96.235 850 12 5 1 835 1 845 0.0 1677
Msa0334270 MtrunA17_Chr7g0238321 51.705 528 216 8 202 719 271 769 3.60e-164 502
Msa0334270 MtrunA17_Chr8g0388841 33.415 817 408 25 25 831 7 697 3.28e-125 393
Msa0334270 MtrunA17_Chr3g0127171 42.075 530 249 14 321 831 195 685 1.09e-120 381
Msa0334270 MtrunA17_Chr1g0146771 43.539 503 232 16 339 831 232 692 1.63e-117 373
Msa0334270 MtrunA17_Chr8g0384061 36.111 504 231 9 340 831 204 628 8.78e-87 290
Msa0334270 MtrunA17_Chr3g0129821 42.632 380 190 6 340 719 168 519 1.56e-83 280
Msa0334270 MtrunA17_Chr4g0067151 31.390 223 137 9 466 682 65 277 1.03e-24 106
Msa0334270 MtrunA17_Chr1g0185501 29.302 215 134 10 475 682 65 268 7.62e-19 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0334270 AT3G15470.1 57.640 890 286 19 14 835 4 870 0.0 889
Msa0334270 AT5G54200.1 57.344 851 288 13 9 839 21 816 0.0 887
Msa0334270 AT2G37670.1 52.037 540 190 11 202 718 248 741 4.77e-161 493
Msa0334270 AT2G37670.2 52.037 540 190 11 202 718 249 742 5.69e-161 493
Msa0334270 AT5G02430.1 52.290 524 222 8 202 719 258 759 1.43e-156 481
Msa0334270 AT5G53500.2 41.155 554 245 15 284 831 159 637 1.25e-111 356
Msa0334270 AT5G53500.1 41.155 554 245 15 284 831 159 637 1.25e-111 356
Msa0334270 AT5G24320.1 41.098 528 240 12 321 831 204 677 7.77e-109 350
Msa0334270 AT5G24320.2 40.789 532 240 13 321 831 204 681 1.05e-106 344
Msa0334270 AT5G42010.1 39.648 512 233 14 342 830 233 691 1.06e-103 337
Msa0334270 AT1G64610.2 39.431 492 239 13 342 830 194 629 1.82e-99 324
Msa0334270 AT1G64610.1 39.431 492 239 13 342 830 194 629 1.82e-99 324
Msa0334270 AT5G42010.2 47.447 333 161 8 342 672 233 553 1.02e-89 295
Msa0334270 AT1G48870.2 32.389 494 245 9 340 832 172 577 3.33e-78 265
Msa0334270 AT1G48870.3 32.389 494 245 9 340 832 172 577 3.33e-78 265
Msa0334270 AT1G48870.1 32.389 494 245 9 340 832 172 577 3.33e-78 265
Msa0334270 AT4G02730.1 29.224 219 138 10 475 686 81 289 2.37e-20 94.0
Msa0334270 AT3G49660.1 28.636 220 141 9 470 683 62 271 3.80e-20 92.8
Msa0334270 AT3G49660.1 24.198 343 206 13 353 682 11 312 6.62e-13 71.2
Msa0334270 AT2G16405.1 25.410 244 146 9 464 682 199 431 1.75e-12 71.2

Find 256 sgRNAs with CRISPR-Local

Find 434 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATGTTATTTCTTGTTAA+TGG 0.154159 2_4:+52564516 Msa0334270:CDS
AAACCCGTTTGCTCCTTTAA+AGG 0.187744 2_4:+52564678 Msa0334270:CDS
GATCTGGTTCATAAGTTTAA+AGG 0.211448 2_4:+52567519 Msa0334270:CDS
TTTCTTGGTCTTCGTCTTCT+TGG 0.228579 2_4:-52563420 None:intergenic
ATACTTCATTAGTGGATCTT+TGG 0.232896 2_4:+52566911 Msa0334270:CDS
TCCATTATCAAGATCTCTTA+TGG 0.253771 2_4:-52563872 None:intergenic
ATCATGCAAATGACCTTTAA+AGG 0.262544 2_4:-52564691 None:intergenic
GAATGCGATGAAATTGAAAA+AGG 0.265376 2_4:+52563832 Msa0334270:CDS
AGTATTAAGTTTAGTTTAGA+TGG 0.278056 2_4:+52564381 Msa0334270:CDS
CCCTTAACAGTTACGACATA+TGG 0.289130 2_4:+52563476 Msa0334270:CDS
AAGCTCATAATGGATCAATT+TGG 0.292538 2_4:+52564358 Msa0334270:CDS
TCAAATCACAAGAAAATTAC+TGG 0.302245 2_4:+52567335 Msa0334270:CDS
AGTACTGTTCCCGGTAATTC+TGG 0.305266 2_4:+52563700 Msa0334270:CDS
TCCTTTGGCGGATAATCTTC+TGG 0.309791 2_4:+52564563 Msa0334270:CDS
TTCCGGTGTTGATTTCTTGC+CGG 0.310114 2_4:+52563774 Msa0334270:CDS
GGGGAATTCTTCTACTTTGC+CGG 0.310297 2_4:+52563795 Msa0334270:CDS
TGGTAATGGAGGTTGTTCTA+AGG 0.310884 2_4:+52564092 Msa0334270:CDS
TCTTCTAGAAGAATTCTTTC+CGG 0.314096 2_4:-52563746 None:intergenic
CAAGAAAATTACTGGTTTCC+AGG 0.315246 2_4:+52567343 Msa0334270:CDS
ATATGTTATTTCTTGTTAAT+GGG 0.320409 2_4:+52564517 Msa0334270:CDS
AGGGTGAGAGTGAGACAATA+TGG 0.320663 2_4:+52564288 Msa0334270:CDS
GAAAGGGGAGTTGTTGCTTA+TGG 0.321504 2_4:+52564470 Msa0334270:CDS
CGGATCGACAAGTTGTTGAT+TGG 0.329763 2_4:+52566961 Msa0334270:CDS
ACCCGTGACGTTGTCTCCTT+TGG 0.330639 2_4:+52564548 Msa0334270:CDS
CGGGGATCCGCCAGAATTAC+CGG 0.330665 2_4:-52563710 None:intergenic
GTCAGATTTGGATCGGAATA+TGG 0.333292 2_4:-52563608 None:intergenic
GGGGTTGTTGAGATTGAGAT+TGG 0.333340 2_4:-52563240 None:intergenic
GGAGACAACGTCACGGGTTC+CGG 0.336795 2_4:-52564543 None:intergenic
AATGAGAATGGGTTTGTTCA+TGG 0.340709 2_4:-52563269 None:intergenic
GCCGGTGGTGGTGTTGGAAA+TGG 0.352022 2_4:+52564063 Msa0334270:CDS
CCTCTCTTGGTCTAAGTCTC+AGG 0.354450 2_4:+52564722 Msa0334270:CDS
ACTCGTCTTCTTCAAACTAT+TGG 0.355721 2_4:+52563532 Msa0334270:CDS
AGCCATTCCCTGGCCTGGTA+TGG 0.363748 2_4:+52567866 Msa0334270:CDS
GAGGGTTCACGATCTGCTTC+AGG 0.366525 2_4:+52568008 Msa0334270:CDS
GTCAGTATGGATTTCACAAA+TGG 0.367312 2_4:+52568152 Msa0334270:CDS
AAAGTGAAGGAGGTTGGTAC+TGG 0.368514 2_4:+52563940 Msa0334270:CDS
TGGAGCGAGGTGTTGGGGTT+CGG 0.369874 2_4:-52563020 None:intergenic
GATGATAGATACTTCATTAG+TGG 0.371354 2_4:+52566903 Msa0334270:CDS
TCCGGTGTTGATTTCTTGCC+GGG 0.372760 2_4:+52563775 Msa0334270:CDS
ACCATAAGAGATCTTGATAA+TGG 0.372863 2_4:+52563871 Msa0334270:CDS
AGAGATTGGAGCGAGGTGTT+GGG 0.377092 2_4:-52563026 None:intergenic
GGTGACACCTTTACTTCTGT+TGG 0.380370 2_4:-52567799 None:intergenic
TAGTAGGAAGTCGTTGAGTT+TGG 0.382361 2_4:+52564614 Msa0334270:CDS
TCAAAGCCCTCGTGTCAGTA+TGG 0.385856 2_4:+52568139 Msa0334270:CDS
TCCATATGTCGTAACTGTTA+AGG 0.386442 2_4:-52563477 None:intergenic
ATGGCATTGTAAGGTGGGAT+TGG 0.388194 2_4:-52563589 None:intergenic
TATCATCAACAGGATTAAAC+TGG 0.390022 2_4:-52566887 None:intergenic
CGCATAAGCTCCTGCACAAT+CGG 0.393774 2_4:-52564009 None:intergenic
TGTGAAGAATGAATGAGTTA+AGG 0.398605 2_4:-52563062 None:intergenic
ACTTCTGTTGGGCCTGCAAT+CGG 0.398774 2_4:-52567787 None:intergenic
GTGACACCTTTACTTCTGTT+GGG 0.400336 2_4:-52567798 None:intergenic
TTCGTCTTCTTGGTCAGAGT+TGG 0.402171 2_4:-52563410 None:intergenic
GCCTGGTATGGGTGATGCAT+GGG 0.403215 2_4:+52567878 Msa0334270:CDS
GTTGTTGCTTATGGAGAAAC+AGG 0.403691 2_4:+52564479 Msa0334270:CDS
AGTACTTCTGATGAACTTCC+TGG 0.405091 2_4:-52567453 None:intergenic
GTGAAAGAAGTTAGAGAAGA+TGG 0.405227 2_4:+52563907 Msa0334270:CDS
GTTGATGTTGTTGTTGGAGT+TGG 0.406911 2_4:-52563303 None:intergenic
GGCCTGGTATGGGTGATGCA+TGG 0.409184 2_4:+52567877 Msa0334270:CDS
ACCACGTGAAAGGGCAAAAT+CGG 0.410979 2_4:-52563563 None:intergenic
CCATATGTCGTAACTGTTAA+GGG 0.412326 2_4:-52563476 None:intergenic
CAAGAGATTCAAGCTCATAA+TGG 0.414387 2_4:+52564348 Msa0334270:CDS
GTTGTTATGACCGTCAGATT+TGG 0.414968 2_4:-52563620 None:intergenic
GTTGGTGTTGATGTTGTTGT+TGG 0.416733 2_4:-52563309 None:intergenic
TTCCGGACGGAGGTTTAGCC+GGG 0.417860 2_4:-52563729 None:intergenic
GATTCATGTTTGGCAGGTTG+TGG 0.418930 2_4:+52564437 Msa0334270:CDS
GTTTGTGTATGGTGAGAGAT+TGG 0.420689 2_4:-52563040 None:intergenic
TTTACAGTGAAAATGTTCAT+AGG 0.422742 2_4:-52567832 None:intergenic
ATGATGTGCTTGACCTCTCT+TGG 0.423598 2_4:+52564709 Msa0334270:CDS
TTGTGGAGTCTGAGAGGAAA+GGG 0.424221 2_4:+52564454 Msa0334270:CDS
TTCTTCTACTTTGCCGGACA+CGG 0.424991 2_4:+52563801 Msa0334270:CDS
GAGAGATTGGAGCGAGGTGT+TGG 0.426085 2_4:-52563027 None:intergenic
CATTCTATTTCACCCGTGTC+CGG 0.427553 2_4:-52563814 None:intergenic
ATTCGTAGAAGAAATCTTGT+TGG 0.429715 2_4:-52563339 None:intergenic
AATGTAAATAGTACTGTTCC+CGG 0.431742 2_4:+52563691 Msa0334270:CDS
AGGATTGTGTGATTCATGTT+TGG 0.432003 2_4:+52564427 Msa0334270:CDS
AGTGAGTGCAAACACATGTT+CGG 0.432044 2_4:-52564652 None:intergenic
AACCACACTAACATTTGCTC+AGG 0.437666 2_4:+52563182 Msa0334270:five_prime_UTR
AGGATTCCCATGTATACATC+TGG 0.438205 2_4:+52567754 Msa0334270:CDS
TACTGGGAGACAGTTGACTA+TGG 0.438212 2_4:+52563957 Msa0334270:CDS
AGTCAAGATGGGTCATTTCA+TGG 0.438874 2_4:+52564258 Msa0334270:CDS
TTGTTATACACCTGATGGTC+AGG 0.439552 2_4:+52567013 Msa0334270:CDS
GATCGGAATATGGCATTGTA+AGG 0.442136 2_4:-52563598 None:intergenic
CTGTGAGGGAGGCTGAAATC+TGG 0.442676 2_4:-52567701 None:intergenic
TGTCTCACTCTCACCCTCTC+AGG 0.442951 2_4:-52564282 None:intergenic
CTTGAACCAACCTGACCATC+AGG 0.443778 2_4:-52567023 None:intergenic
TTTGAGAGAGATTTAAGAGA+GGG 0.447068 2_4:-52563091 None:intergenic
GTTGAGTTTGGACCAGTTTG+TGG 0.447377 2_4:+52564626 Msa0334270:CDS
TGGCATTGTAAGGTGGGATT+GGG 0.449165 2_4:-52563588 None:intergenic
AGGGGAGGTCGTCCGTTAGT+AGG 0.450408 2_4:+52564598 Msa0334270:CDS
GCCATTCCCTGGCCTGGTAT+GGG 0.450820 2_4:+52567867 Msa0334270:CDS
CTTCTGGAGAGGAAGAGAAA+GGG 0.453072 2_4:+52564579 Msa0334270:CDS
GGTTCGCATATGGAGCATTC+CGG 0.453183 2_4:+52566941 Msa0334270:CDS
TAGTTCAATGGCGGGTCATA+AGG 0.453276 2_4:+52564161 Msa0334270:CDS
TCTCGAATACGGGTTGTTGA+TGG 0.453927 2_4:+52567492 Msa0334270:CDS
ATGAAGTATCTATCATCAAC+AGG 0.454580 2_4:-52566897 None:intergenic
TGGATGCTAAGGTTCGCATA+TGG 0.456377 2_4:+52566931 Msa0334270:CDS
GTCGTTGTTGCTATCAAGCT+CGG 0.457779 2_4:-52567931 None:intergenic
TAGTGGATCTTTGGATGCTA+AGG 0.458377 2_4:+52566920 Msa0334270:CDS
ATGACCTTTAAAGGAGCAAA+CGG 0.460221 2_4:-52564682 None:intergenic
AGAGATACTTCGTCGGAGAA+AGG 0.460899 2_4:+52564204 Msa0334270:CDS
GGGTGAGAGTGAGACAATAT+GGG 0.461483 2_4:+52564289 Msa0334270:CDS
TCTTCTAGAAGAAGTCATTC+CGG 0.463152 2_4:+52563757 Msa0334270:CDS
AGTAGAAGAAGAGATAAAAC+AGG 0.465592 2_4:-52563665 None:intergenic
GCACTTGCTCTCATCTTCAA+TGG 0.466256 2_4:+52566354 Msa0334270:intron
GGTTGTTGATGGTATTGATC+TGG 0.466728 2_4:+52567503 Msa0334270:CDS
TGCATCACCCATACCAGGCC+AGG 0.466953 2_4:-52567874 None:intergenic
CCGGTGGTGGTGTTGGAAAT+GGG 0.467471 2_4:+52564064 Msa0334270:CDS
GGTAATGGAGGTTGTTCTAA+GGG 0.468975 2_4:+52564093 Msa0334270:CDS
AATCTTGTTGGTCTAGTTGT+TGG 0.470295 2_4:-52563327 None:intergenic
GTGAGTGCAAACACATGTTC+GGG 0.470370 2_4:-52564651 None:intergenic
GGAAGAAGAAAGGAGGGAGT+TGG 0.471803 2_4:+52564115 Msa0334270:CDS
CGGTAATTCTGGCGGATCCC+CGG 0.475497 2_4:+52563711 Msa0334270:CDS
CATGTTCGGGAACCACAAAC+TGG 0.476756 2_4:-52564638 None:intergenic
GTATTAAGTTTAGTTTAGAT+GGG 0.476966 2_4:+52564382 Msa0334270:CDS
TTGTGTGATTCATGTTTGGC+AGG 0.477071 2_4:+52564431 Msa0334270:CDS
TTTCCGGACGGAGGTTTAGC+CGG 0.477265 2_4:-52563730 None:intergenic
AAGAGGAGAGAGAGAGTAAA+CGG 0.478902 2_4:-52563369 None:intergenic
TCAGTAGCCATTCCCTGGCC+TGG 0.479922 2_4:+52567861 Msa0334270:CDS
CATCTGCTGATTCTCGAATA+CGG 0.481379 2_4:+52567481 Msa0334270:CDS
ATATTTACCATTTGCTGTGA+GGG 0.481702 2_4:-52567715 None:intergenic
CGTGACGTTGTCTCCTTTGG+CGG 0.482687 2_4:+52564551 Msa0334270:CDS
ACCGGTGATGTAGCCGGTGG+TGG 0.485090 2_4:+52564051 Msa0334270:CDS
TGTCATTTATATAATACATC+TGG 0.485507 2_4:+52567148 Msa0334270:CDS
TCAGCCTCCCTCACAGCAAA+TGG 0.486149 2_4:+52567708 Msa0334270:CDS
TGTTCTAAGGGGAAGAAGAA+AGG 0.488845 2_4:+52564105 Msa0334270:CDS
TGGACAAAACAGTGCGGCTG+TGG 0.490355 2_4:+52566374 Msa0334270:CDS
GTTGAGATTGAGATTGGGAT+TGG 0.490619 2_4:-52563234 None:intergenic
GGGTTGTTGAGATTGAGATT+GGG 0.491004 2_4:-52563239 None:intergenic
TTGAGATTGAGATTGGGATT+GGG 0.492778 2_4:-52563233 None:intergenic
TCAGTATGGATTTCACAAAT+GGG 0.493127 2_4:+52568153 Msa0334270:CDS
ATTGTTACTGCTGGTCTTCG+AGG 0.493885 2_4:+52568209 Msa0334270:CDS
CAATCAACAACTTGTCGATC+CGG 0.494327 2_4:-52566960 None:intergenic
ACGAGTACGACGTTCTGAAA+CGG 0.496617 2_4:-52563515 None:intergenic
TCTGTGCAGGGTGCACTAGT+TGG 0.499249 2_4:+52567109 Msa0334270:intron
TACAGGTGTAGGAGGATGAT+TGG 0.499821 2_4:-52567967 None:intergenic
TGGAATAAAGTGAAGGAGGT+TGG 0.500727 2_4:+52563934 Msa0334270:CDS
GATGTAGCCGGTGGTGGTGT+TGG 0.500879 2_4:+52564057 Msa0334270:CDS
TTCTTGGTCAGAGTTGGAGT+TGG 0.500980 2_4:-52563404 None:intergenic
ACACAGAAACATTTGCTCTC+TGG 0.501437 2_4:+52562997 None:intergenic
CGGAATATGGCATTGTAAGG+TGG 0.504983 2_4:-52563595 None:intergenic
CGAGTTGATATCAGCTCAGA+AGG 0.505155 2_4:+52568321 Msa0334270:CDS
TAGAATTTCTGCAACATGGC+CGG 0.505340 2_4:+52568088 Msa0334270:CDS
GTCTTCTTGAGAAATGAGAA+TGG 0.506187 2_4:-52563281 None:intergenic
TCTTCTGGAGAGGAAGAGAA+AGG 0.514361 2_4:+52564578 Msa0334270:CDS
GTTGGAGTTGGAACAAGAGC+AGG 0.515164 2_4:-52563392 None:intergenic
GAGGAGGTCGAGCTCGGCTA+CGG 0.516325 2_4:+52564230 Msa0334270:CDS
TCTTCTTGAGAAATGAGAAT+GGG 0.517246 2_4:-52563280 None:intergenic
CACTAACATTTGCTCAGGGA+AGG 0.519154 2_4:+52563187 Msa0334270:five_prime_UTR
CGTCGGAGAAAGGCGGGAGG+AGG 0.519256 2_4:+52564214 Msa0334270:CDS
GGTATGGTGATTGTTACTGC+TGG 0.519931 2_4:+52568200 Msa0334270:CDS
CCCATTTCCAACACCACCAC+CGG 0.520955 2_4:-52564064 None:intergenic
ATCTGCTGATTCTCGAATAC+GGG 0.522317 2_4:+52567482 Msa0334270:CDS
TGCACTAGTTGGTTCATACA+AGG 0.522538 2_4:+52567120 Msa0334270:CDS
TGGTCAATCTCCGATTGTGC+AGG 0.524667 2_4:+52563999 Msa0334270:CDS
TGACCTTTAAAGGAGCAAAC+GGG 0.525285 2_4:-52564681 None:intergenic
GTTGGAACAAGAGCAGGAAG+AGG 0.525322 2_4:-52563386 None:intergenic
GGATTGGGTTACCACGTGAA+AGG 0.527047 2_4:-52563573 None:intergenic
CAAGAGTGTTGCTAGTTCAA+TGG 0.527850 2_4:+52564149 Msa0334270:CDS
ATACTTCGTCGGAGAAAGGC+GGG 0.528933 2_4:+52564208 Msa0334270:CDS
GGGAAATATCTTGCTAGTGC+TGG 0.528990 2_4:+52564402 Msa0334270:CDS
CTAAGGGGAAGAAGAAAGGA+GGG 0.531994 2_4:+52564109 Msa0334270:CDS
ACCACCACCGGCTACATCAC+CGG 0.532113 2_4:-52564052 None:intergenic
TCCCATGCATCACCCATACC+AGG 0.535005 2_4:-52567879 None:intergenic
GAGATTGGAGCGAGGTGTTG+GGG 0.536749 2_4:-52563025 None:intergenic
TGCAGGCCCAACAGAAGTAA+AGG 0.537014 2_4:+52567792 Msa0334270:CDS
AGGCGGGAGGAGGTCGAGCT+CGG 0.539651 2_4:+52564224 Msa0334270:CDS
GTACTTCTGATGAACTTCCT+GGG 0.541085 2_4:-52567452 None:intergenic
GGAATATGGCATTGTAAGGT+GGG 0.542196 2_4:-52563594 None:intergenic
GCTACGGATGATAGTCAAGA+TGG 0.542559 2_4:+52564246 Msa0334270:CDS
AATGAGTTAAGGTTTGTGTA+TGG 0.542837 2_4:-52563051 None:intergenic
TCCCCGGCTAAACCTCCGTC+CGG 0.543498 2_4:+52563727 Msa0334270:CDS
CGGTCTCCTCATGATTCTGC+CGG 0.544667 2_4:-52564032 None:intergenic
TCGATAGAATTTCTGCAACA+TGG 0.545086 2_4:+52568084 Msa0334270:CDS
AGATCACCTTCTCCATAAGC+TGG 0.546253 2_4:+52568350 Msa0334270:CDS
CGACGTTCTGAAACGGAAGA+AGG 0.546555 2_4:-52563508 None:intergenic
ATTTGAGAGAGATTTAAGAG+AGG 0.546952 2_4:-52563092 None:intergenic
TGTGGAGTCTGAGAGGAAAG+GGG 0.547241 2_4:+52564455 Msa0334270:CDS
CTCGCAATGGTTGCATGGTG+TGG 0.549432 2_4:-52568041 None:intergenic
AAGTTAGAGAAGATGGAATG+TGG 0.550294 2_4:+52563914 Msa0334270:CDS
GATTGGGTTACCACGTGAAA+GGG 0.551300 2_4:-52563572 None:intergenic
TCTAAGGGGAAGAAGAAAGG+AGG 0.552386 2_4:+52564108 Msa0334270:CDS
GGAAATGGGAGTAATGGTAA+TGG 0.552792 2_4:+52564078 Msa0334270:CDS
TATGACCGTCAGATTTGGAT+CGG 0.552937 2_4:-52563615 None:intergenic
GAGGAATTTGAGATGACGGT+TGG 0.552951 2_4:+52563979 Msa0334270:CDS
TCTTCTACTTTGCCGGACAC+GGG 0.553423 2_4:+52563802 Msa0334270:CDS
ACTGTTTGTCGCACTCGCAA+TGG 0.554025 2_4:-52568054 None:intergenic
AAGTGAAGGAGGTTGGTACT+GGG 0.559730 2_4:+52563941 Msa0334270:CDS
GAGGAGACCGGTGATGTAGC+CGG 0.560566 2_4:+52564045 Msa0334270:CDS
ATTTCTTGTTAATGGGTCGC+CGG 0.562164 2_4:+52564524 Msa0334270:CDS
TTGGATCGATCTTCATGAGA+TGG 0.562964 2_4:+52566980 Msa0334270:CDS
ACCCATACCAGGCCAGGGAA+TGG 0.565424 2_4:-52567868 None:intergenic
ATGTGTCAGTAGCCATTCCC+TGG 0.566854 2_4:+52567856 Msa0334270:CDS
TCGCACTCGCAATGGTTGCA+TGG 0.572307 2_4:-52568046 None:intergenic
GGTGTTGGAAATGGGAGTAA+TGG 0.576549 2_4:+52564072 Msa0334270:CDS
GATACTTCGTCGGAGAAAGG+CGG 0.578609 2_4:+52564207 Msa0334270:CDS
TTTACCATTTGCTGTGAGGG+AGG 0.584191 2_4:-52567712 None:intergenic
AGAGGAAAACTTCGGTGTCG+AGG 0.584446 2_4:+52567989 Msa0334270:CDS
AGTGTTGCTAGTTCAATGGC+GGG 0.585999 2_4:+52564153 Msa0334270:CDS
TTCTGGAGAGGAAGAGAAAG+GGG 0.586118 2_4:+52564580 Msa0334270:CDS
GGGGATCCGCCAGAATTACC+GGG 0.588995 2_4:-52563709 None:intergenic
CGGCAGAATCATGAGGAGAC+CGG 0.589002 2_4:+52564033 Msa0334270:CDS
GCCAAAGGAGACAACGTCAC+GGG 0.589907 2_4:-52564549 None:intergenic
ATATATTGTTGCTGCAAGTG+AGG 0.589984 2_4:+52567734 Msa0334270:CDS
GAGGAAAACTTCGGTGTCGA+GGG 0.590606 2_4:+52567990 Msa0334270:CDS
TCATCCTCCTACACCTGTAG+AGG 0.591962 2_4:+52567971 Msa0334270:CDS
CTAGAAGAATTCTTTCCGGA+CGG 0.592446 2_4:-52563742 None:intergenic
GAAGAATTCTTTCCGGACGG+AGG 0.594884 2_4:-52563739 None:intergenic
ATATCTTGCTAGTGCTGGTG+AGG 0.595765 2_4:+52564407 Msa0334270:CDS
AATGGGAGTAATGGTAATGG+AGG 0.600063 2_4:+52564081 Msa0334270:CDS
GGCAAAGTAGAAGAATTCCC+CGG 0.602827 2_4:-52563793 None:intergenic
AGTAACAATCACCATACCCC+AGG 0.610628 2_4:-52568195 None:intergenic
TCCAGAAGATTATCCGCCAA+AGG 0.612551 2_4:-52564564 None:intergenic
ACTAACATTTGCTCAGGGAA+GGG 0.613923 2_4:+52563188 Msa0334270:five_prime_UTR
GTTGTGGAGTCTGAGAGGAA+AGG 0.615157 2_4:+52564453 Msa0334270:CDS
GTCATTTCATGGACCTGAGA+GGG 0.616808 2_4:+52564269 Msa0334270:CDS
TATATTTACCATTTGCTGTG+AGG 0.618354 2_4:-52567716 None:intergenic
TATGGAGGAATTTGAGATGA+CGG 0.619376 2_4:+52563975 Msa0334270:CDS
GCATCACCCATACCAGGCCA+GGG 0.621344 2_4:-52567873 None:intergenic
TCCCTGAGCAAATGTTAGTG+TGG 0.625219 2_4:-52563184 None:intergenic
GCTGCTTGTTATACACCTGA+TGG 0.625541 2_4:+52567008 Msa0334270:CDS
GGCAGGTTGTGGAGTCTGAG+AGG 0.626338 2_4:+52564448 Msa0334270:CDS
TACTTCTGATGAACTTCCTG+GGG 0.627143 2_4:-52567451 None:intergenic
CTACGGATGATAGTCAAGAT+GGG 0.627312 2_4:+52564247 Msa0334270:CDS
ACCACACTAACATTTGCTCA+GGG 0.627576 2_4:+52563183 Msa0334270:five_prime_UTR
TGGCGGATAATCTTCTGGAG+AGG 0.629487 2_4:+52564568 Msa0334270:CDS
CCTGAGACTTAGACCAAGAG+AGG 0.630082 2_4:-52564722 None:intergenic
CCGGTGTTGATTTCTTGCCG+GGG 0.630342 2_4:+52563776 Msa0334270:CDS
TTGTGCAGGAGCTTATGCGC+CGG 0.632452 2_4:+52564013 Msa0334270:CDS
GAGTGTTGCTAGTTCAATGG+CGG 0.637336 2_4:+52564152 Msa0334270:CDS
TGGAATGTGGAATAAAGTGA+AGG 0.638048 2_4:+52563927 Msa0334270:CDS
CAATGGCGGGTCATAAGGAG+AGG 0.638802 2_4:+52564166 Msa0334270:CDS
TGGAGAGGAAGAGAAAGGGG+AGG 0.640683 2_4:+52564583 Msa0334270:CDS
CCCCGGCAAGAAATCAACAC+CGG 0.643592 2_4:-52563776 None:intergenic
TGGCGGGTCATAAGGAGAGG+AGG 0.643676 2_4:+52564169 Msa0334270:CDS
GTAATGGAGGTTGTTCTAAG+GGG 0.650046 2_4:+52564094 Msa0334270:CDS
TGATGAGAGAGATACTTCGT+CGG 0.650321 2_4:+52564197 Msa0334270:CDS
ATATTCCGATCCAAATCTGA+CGG 0.651541 2_4:+52563610 Msa0334270:CDS
ACTCAACGACTTCCTACTAA+CGG 0.653986 2_4:-52564610 None:intergenic
CAGTATGGATTTCACAAATG+GGG 0.657850 2_4:+52568154 Msa0334270:CDS
CGCCAAAGGAGACAACGTCA+CGG 0.658328 2_4:-52564550 None:intergenic
ACTGTTCCCGGTAATTCTGG+CGG 0.661998 2_4:+52563703 Msa0334270:CDS
GGTCATTTCATGGACCTGAG+AGG 0.666445 2_4:+52564268 Msa0334270:CDS
TATGCGCCGGCAGAATCATG+AGG 0.668765 2_4:+52564026 Msa0334270:CDS
GTTGCTTATGGAGAAACAGG+AGG 0.670617 2_4:+52564482 Msa0334270:CDS
TGGGAGACAGTTGACTATGG+AGG 0.676143 2_4:+52563960 Msa0334270:CDS
ACACCTGTAGAGGAAAACTT+CGG 0.682782 2_4:+52567981 Msa0334270:CDS
GCACTAGTTGGTTCATACAA+GGG 0.684365 2_4:+52567121 Msa0334270:CDS
TCCGGACGGAGGTTTAGCCG+GGG 0.685261 2_4:-52563728 None:intergenic
AATGTGGAATAAAGTGAAGG+AGG 0.688067 2_4:+52563930 Msa0334270:CDS
GTGAAATCCATACTGACACG+AGG 0.695168 2_4:-52568146 None:intergenic
ATGTTCATAGGACTGTGTCA+CGG 0.698331 2_4:-52567820 None:intergenic
TGAAATCCATACTGACACGA+GGG 0.711651 2_4:-52568145 None:intergenic
TATGGTGAGAGATTGGAGCG+AGG 0.720760 2_4:-52563033 None:intergenic
CTTCGTCGGAGAAAGGCGGG+AGG 0.733071 2_4:+52564211 Msa0334270:CDS
GAGACCGGTGATGTAGCCGG+TGG 0.736645 2_4:+52564048 Msa0334270:CDS
CTTCAATGGACAAAACAGTG+CGG 0.776088 2_4:+52566368 Msa0334270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTAATTCAATTTTTAATA+GGG - chr2_4:52566607-52566626 None:intergenic 10.0%
!!! AATCTAATTCAATTTTTAAT+AGG - chr2_4:52566608-52566627 None:intergenic 10.0%
!!! AATATGTTATTTCTTGTTAA+TGG + chr2_4:52564516-52564535 Msa0334270:CDS 15.0%
!!! ATATGTTATTTCTTGTTAAT+GGG + chr2_4:52564517-52564536 Msa0334270:CDS 15.0%
!!! TCAGTATTGATTTTATAATT+GGG + chr2_4:52564954-52564973 Msa0334270:intron 15.0%
!!! TTTATAAACTTCGTTTTTAA+TGG + chr2_4:52565292-52565311 Msa0334270:intron 15.0%
!!! TTATAAACTTCGTTTTTAAT+GGG + chr2_4:52565293-52565312 Msa0334270:intron 15.0%
!!! CATTTAAAATGAACAATTTA+GGG + chr2_4:52565380-52565399 Msa0334270:intron 15.0%
!!! TAAATACAATTTTAGTTTTG+TGG - chr2_4:52565718-52565737 None:intergenic 15.0%
!! GTTTAACAACAAAAATAATT+TGG - chr2_4:52565791-52565810 None:intergenic 15.0%
!! TAATTAGCAAAGAAAAAAAA+CGG - chr2_4:52566818-52566837 None:intergenic 15.0%
!! AATACAATTTATCATACAAA+TGG - chr2_4:52567607-52567626 None:intergenic 15.0%
!!! AGTATTAAGTTTAGTTTAGA+TGG + chr2_4:52564381-52564400 Msa0334270:CDS 20.0%
!!! GTATTAAGTTTAGTTTAGAT+GGG + chr2_4:52564382-52564401 Msa0334270:CDS 20.0%
!! ATTTACTATTCACTCTTATA+TGG + chr2_4:52564825-52564844 Msa0334270:intron 20.0%
!!! CTCAGTATTGATTTTATAAT+TGG + chr2_4:52564953-52564972 Msa0334270:intron 20.0%
!! GTACATTTAACTGTTAAAAT+TGG + chr2_4:52565044-52565063 Msa0334270:intron 20.0%
!!! AAAATGGTTTATTTTTCCAA+CGG + chr2_4:52565319-52565338 Msa0334270:intron 20.0%
!!! GCATTTAAAATGAACAATTT+AGG + chr2_4:52565379-52565398 Msa0334270:intron 20.0%
!! AAATTAACTTCTGATTAAGT+AGG + chr2_4:52565674-52565693 Msa0334270:intron 20.0%
!!! AATTTTAGTTTTGTGGTAAA+AGG - chr2_4:52565711-52565730 None:intergenic 20.0%
!! AGACAAAAGTTATTTGTAAT+TGG + chr2_4:52565834-52565853 Msa0334270:intron 20.0%
!! GAAACCATATTTAACATAAA+AGG + chr2_4:52565878-52565897 Msa0334270:intron 20.0%
!!! CAAACCTTTTATGTTAAATA+TGG - chr2_4:52565885-52565904 None:intergenic 20.0%
!! CATATTTAACATAAAAGGTT+TGG + chr2_4:52565883-52565902 Msa0334270:intron 20.0%
!!! TGAATTTTGAATAGATTCTT+TGG + chr2_4:52566152-52566171 Msa0334270:intron 20.0%
!!! GAATTTTGAATAGATTCTTT+GGG + chr2_4:52566153-52566172 Msa0334270:intron 20.0%
!!! AAAAACACATAAAAAGTACA+CGG - chr2_4:52566562-52566581 None:intergenic 20.0%
!!! TGTCATTTATATAATACATC+TGG + chr2_4:52567148-52567167 Msa0334270:CDS 20.0%
!!! ATTAGAACTTTCCAAAATTT+TGG + chr2_4:52568236-52568255 Msa0334270:intron 20.0%
!!! TCTGATCAAGTTTTTTAGAA+TGG - chr2_4:52563150-52563169 None:intergenic 25.0%
!!! TATTGTTGTTGTTGTTTTCT+TGG - chr2_4:52563438-52563457 None:intergenic 25.0%
! AATGCGATGAAATTGAAAAA+GGG + chr2_4:52563833-52563852 Msa0334270:CDS 25.0%
!!! GTATTGATTTTATAATTGGG+TGG + chr2_4:52564957-52564976 Msa0334270:intron 25.0%
! AAATGTACTCTTATACAACT+TGG - chr2_4:52565072-52565091 None:intergenic 25.0%
! TTAGTTATTAGAGTACATAC+AGG + chr2_4:52565120-52565139 Msa0334270:intron 25.0%
! TTAAAATGAACAATTTAGGG+AGG + chr2_4:52565383-52565402 Msa0334270:intron 25.0%
!! GTTTGATATTTTCTTTGACA+AGG + chr2_4:52565452-52565471 Msa0334270:intron 25.0%
! ATATGTTGATGTCTTTACAA+TGG + chr2_4:52565628-52565647 Msa0334270:intron 25.0%
! AATCAGTTCAAAACTTTCAA+AGG - chr2_4:52565932-52565951 None:intergenic 25.0%
! CAATAAGGTATGAATCAAAT+AGG - chr2_4:52566028-52566047 None:intergenic 25.0%
! TGATTCATACCTTATTGTTA+TGG + chr2_4:52566031-52566050 Msa0334270:intron 25.0%
!!! CAAATTTTAATAACTACCAG+AGG - chr2_4:52566083-52566102 None:intergenic 25.0%
!! AAAACACATAAAAAGTACAC+GGG - chr2_4:52566561-52566580 None:intergenic 25.0%
!! TTCAATTTTTAATAGGGAAG+AGG - chr2_4:52566601-52566620 None:intergenic 25.0%
! AACTATATCTTGAATCAGAT+TGG - chr2_4:52566652-52566671 None:intergenic 25.0%
! GAGTTCTTTAATATCCTATA+GGG + chr2_4:52566747-52566766 Msa0334270:intron 25.0%
! TCAAATCACAAGAAAATTAC+TGG + chr2_4:52567335-52567354 Msa0334270:CDS 25.0%
! CAGTAAATCATTAAATTACC+TGG - chr2_4:52567364-52567383 None:intergenic 25.0%
! CAGGTAATTTAATGATTTAC+TGG + chr2_4:52567362-52567381 Msa0334270:intron 25.0%
! AATCATAAGCATCATAACTT+TGG - chr2_4:52567400-52567419 None:intergenic 25.0%
!! ATTTTTCCAGATGTATACAT+GGG - chr2_4:52567763-52567782 None:intergenic 25.0%
! TTTACAGTGAAAATGTTCAT+AGG - chr2_4:52567835-52567854 None:intergenic 25.0%
! ATAGTCATACACATATTCTA+TGG - chr2_4:52568285-52568304 None:intergenic 25.0%
AATGAGTTAAGGTTTGTGTA+TGG - chr2_4:52563054-52563073 None:intergenic 30.0%
TGTGAAGAATGAATGAGTTA+AGG - chr2_4:52563065-52563084 None:intergenic 30.0%
TTTGAGAGAGATTTAAGAGA+GGG - chr2_4:52563094-52563113 None:intergenic 30.0%
ATTTGAGAGAGATTTAAGAG+AGG - chr2_4:52563095-52563114 None:intergenic 30.0%
!!! GATCAAGTTTTTTAGAATGG+AGG - chr2_4:52563147-52563166 None:intergenic 30.0%
!!! AAGGGCATTTTCATTGAAAT+GGG + chr2_4:52563206-52563225 Msa0334270:five_prime_UTR 30.0%
TCTTCTTGAGAAATGAGAAT+GGG - chr2_4:52563283-52563302 None:intergenic 30.0%
ATTCGTAGAAGAAATCTTGT+TGG - chr2_4:52563342-52563361 None:intergenic 30.0%
AGTAGAAGAAGAGATAAAAC+AGG - chr2_4:52563668-52563687 None:intergenic 30.0%
AATGTAAATAGTACTGTTCC+CGG + chr2_4:52563691-52563710 Msa0334270:CDS 30.0%
! TCTTCTAGAAGAATTCTTTC+CGG - chr2_4:52563749-52563768 None:intergenic 30.0%
GAATGCGATGAAATTGAAAA+AGG + chr2_4:52563832-52563851 Msa0334270:CDS 30.0%
ATGCGATGAAATTGAAAAAG+GGG + chr2_4:52563834-52563853 Msa0334270:CDS 30.0%
ACCATAAGAGATCTTGATAA+TGG + chr2_4:52563871-52563890 Msa0334270:CDS 30.0%
TCCATTATCAAGATCTCTTA+TGG - chr2_4:52563875-52563894 None:intergenic 30.0%
!! AAGCTCATAATGGATCAATT+TGG + chr2_4:52564358-52564377 Msa0334270:CDS 30.0%
ATCATGCAAATGACCTTTAA+AGG - chr2_4:52564694-52564713 None:intergenic 30.0%
!!! TTAGCTTCTGTTTTTTGGAT+AGG + chr2_4:52564745-52564764 Msa0334270:intron 30.0%
!! TTGGATAGGTCTTTTTGTTT+TGG + chr2_4:52564759-52564778 Msa0334270:intron 30.0%
ATGTACACTTATATGCAACT+TGG - chr2_4:52565030-52565049 None:intergenic 30.0%
AAATTTGAGTCTGATTGAGT+AGG - chr2_4:52565269-52565288 None:intergenic 30.0%
!! CGTTTTTAATGGGTCTAAAA+TGG + chr2_4:52565303-52565322 Msa0334270:intron 30.0%
! TTTTCTTTGACAAGGAAACA+TGG + chr2_4:52565460-52565479 Msa0334270:intron 30.0%
AAGATGTCTGTTGAATAAAG+CGG + chr2_4:52565542-52565561 Msa0334270:intron 30.0%
AATAAAGCGGTAACTTACTT+AGG + chr2_4:52565555-52565574 Msa0334270:intron 30.0%
TAGGATGGTTATTTGTAACT+TGG + chr2_4:52565574-52565593 Msa0334270:intron 30.0%
AGGATGGTTATTTGTAACTT+GGG + chr2_4:52565575-52565594 Msa0334270:intron 30.0%
!!! TTAGTTTTGTGGTAAAAGGA+TGG - chr2_4:52565707-52565726 None:intergenic 30.0%
AGAGGATGTTTATGTAAACT+AGG + chr2_4:52565991-52566010 Msa0334270:intron 30.0%
TGCGAAGTATAAACATTACA+AGG - chr2_4:52566325-52566344 None:intergenic 30.0%
!!! ATTTTTTCACACAGTGACTA+TGG + chr2_4:52566424-52566443 Msa0334270:CDS 30.0%
TATATACATGCACATTAGAG+TGG - chr2_4:52566528-52566547 None:intergenic 30.0%
ATCTTGAATCAGATTGGATA+GGG - chr2_4:52566646-52566665 None:intergenic 30.0%
TATCTTGAATCAGATTGGAT+AGG - chr2_4:52566647-52566666 None:intergenic 30.0%
TATTTGTCTTCACTGCATAT+AGG + chr2_4:52566711-52566730 Msa0334270:intron 30.0%
GGAGTTCTTTAATATCCTAT+AGG + chr2_4:52566746-52566765 Msa0334270:intron 30.0%
TTCTTTAATATCCTATAGGG+TGG + chr2_4:52566750-52566769 Msa0334270:intron 30.0%
!! CTAAATTTTAACCACCCTAT+AGG - chr2_4:52566764-52566783 None:intergenic 30.0%
CTATAGGGTGGTTAAAATTT+AGG + chr2_4:52566762-52566781 Msa0334270:intron 30.0%
TAGCAAAGAAAAAAAACGGA+GGG - chr2_4:52566814-52566833 None:intergenic 30.0%
TTAGCAAAGAAAAAAAACGG+AGG - chr2_4:52566815-52566834 None:intergenic 30.0%
AAGCAGATAGAAACGAAAAA+AGG - chr2_4:52566843-52566862 None:intergenic 30.0%
TATCATCAACAGGATTAAAC+TGG - chr2_4:52566890-52566909 None:intergenic 30.0%
! ATGAAGTATCTATCATCAAC+AGG - chr2_4:52566900-52566919 None:intergenic 30.0%
GATGATAGATACTTCATTAG+TGG + chr2_4:52566903-52566922 Msa0334270:CDS 30.0%
! ATACTTCATTAGTGGATCTT+TGG + chr2_4:52566911-52566930 Msa0334270:CDS 30.0%
!! TGAATTTCTGAAGTCTGAAA+TGG - chr2_4:52567061-52567080 None:intergenic 30.0%
TTAGTTAAATTGTCTGTGCA+GGG + chr2_4:52567097-52567116 Msa0334270:intron 30.0%
ATACTCTATTCTGACAATTG+TGG + chr2_4:52567223-52567242 Msa0334270:intron 30.0%
AAAAACAAGATGTTAACCAG+TGG - chr2_4:52567249-52567268 None:intergenic 30.0%
! GATCTGGTTCATAAGTTTAA+AGG + chr2_4:52567519-52567538 Msa0334270:CDS 30.0%
!! ATATTTACCATTTGCTGTGA+GGG - chr2_4:52567718-52567737 None:intergenic 30.0%
!! TATATTTACCATTTGCTGTG+AGG - chr2_4:52567719-52567738 None:intergenic 30.0%
! CATTTTTCCAGATGTATACA+TGG - chr2_4:52567764-52567783 None:intergenic 30.0%
TCAGTATGGATTTCACAAAT+GGG + chr2_4:52568153-52568172 Msa0334270:CDS 30.0%
!!! AGGATTTTGAGATCCAATTG+GGG - chr2_4:52563127-52563146 None:intergenic 35.0%
!!! GAGGATTTTGAGATCCAATT+GGG - chr2_4:52563128-52563147 None:intergenic 35.0%
!!! GAAGGGCATTTTCATTGAAA+TGG + chr2_4:52563205-52563224 Msa0334270:five_prime_UTR 35.0%
TTGAGATTGAGATTGGGATT+GGG - chr2_4:52563236-52563255 None:intergenic 35.0%
!!! GGTTTGTTCATGGTTTTAAG+GGG - chr2_4:52563262-52563281 None:intergenic 35.0%
!!! GGGTTTGTTCATGGTTTTAA+GGG - chr2_4:52563263-52563282 None:intergenic 35.0%
!! TGGGTTTGTTCATGGTTTTA+AGG - chr2_4:52563264-52563283 None:intergenic 35.0%
! AATGAGAATGGGTTTGTTCA+TGG - chr2_4:52563272-52563291 None:intergenic 35.0%
GTCTTCTTGAGAAATGAGAA+TGG - chr2_4:52563284-52563303 None:intergenic 35.0%
! AATCTTGTTGGTCTAGTTGT+TGG - chr2_4:52563330-52563349 None:intergenic 35.0%
CCATATGTCGTAACTGTTAA+GGG - chr2_4:52563479-52563498 None:intergenic 35.0%
TCCATATGTCGTAACTGTTA+AGG - chr2_4:52563480-52563499 None:intergenic 35.0%
ACTCGTCTTCTTCAAACTAT+TGG + chr2_4:52563532-52563551 Msa0334270:CDS 35.0%
ATATTCCGATCCAAATCTGA+CGG + chr2_4:52563610-52563629 Msa0334270:CDS 35.0%
! TCTTCTAGAAGAAGTCATTC+CGG + chr2_4:52563757-52563776 Msa0334270:CDS 35.0%
GTGAAAGAAGTTAGAGAAGA+TGG + chr2_4:52563907-52563926 Msa0334270:CDS 35.0%
AAGTTAGAGAAGATGGAATG+TGG + chr2_4:52563914-52563933 Msa0334270:CDS 35.0%
TGGAATGTGGAATAAAGTGA+AGG + chr2_4:52563927-52563946 Msa0334270:CDS 35.0%
AATGTGGAATAAAGTGAAGG+AGG + chr2_4:52563930-52563949 Msa0334270:CDS 35.0%
! TATGGAGGAATTTGAGATGA+CGG + chr2_4:52563975-52563994 Msa0334270:CDS 35.0%
CAAGAGATTCAAGCTCATAA+TGG + chr2_4:52564348-52564367 Msa0334270:CDS 35.0%
AGGATTGTGTGATTCATGTT+TGG + chr2_4:52564427-52564446 Msa0334270:CDS 35.0%
! ATGACCTTTAAAGGAGCAAA+CGG - chr2_4:52564685-52564704 None:intergenic 35.0%
!!! TCAGGTTAGCTTCTGTTTTT+TGG + chr2_4:52564740-52564759 Msa0334270:intron 35.0%
!!! CATCGTTGGCTTTTGTTAAA+AGG + chr2_4:52564848-52564867 Msa0334270:intron 35.0%
AAGCCAATTCATCAGTTCAT+CGG - chr2_4:52564888-52564907 None:intergenic 35.0%
!! AGTTTTAGTGACTCTCCTTT+CGG + chr2_4:52565152-52565171 Msa0334270:intron 35.0%
AGTCTTAAAAACCTGTACTG+TGG + chr2_4:52565187-52565206 Msa0334270:intron 35.0%
GTCTTAAAAACCTGTACTGT+GGG + chr2_4:52565188-52565207 Msa0334270:intron 35.0%
TGTCACAGTGAAAAGATTTC+TGG + chr2_4:52565227-52565246 Msa0334270:intron 35.0%
GGATGGTTATTTGTAACTTG+GGG + chr2_4:52565576-52565595 Msa0334270:intron 35.0%
! TCAAACACATTTGTTGAGCT+GGG - chr2_4:52565745-52565764 None:intergenic 35.0%
! TTCAAACACATTTGTTGAGC+TGG - chr2_4:52565746-52565765 None:intergenic 35.0%
TCGTAACATTGAATGTGAAG+TGG - chr2_4:52565813-52565832 None:intergenic 35.0%
AGGTTTGGATCCTATTAAAG+AGG + chr2_4:52565898-52565917 Msa0334270:intron 35.0%
GGTTTGGATCCTATTAAAGA+GGG + chr2_4:52565899-52565918 Msa0334270:intron 35.0%
GTTTGGATCCTATTAAAGAG+GGG + chr2_4:52565900-52565919 Msa0334270:intron 35.0%
!!! GGTTTTTTCCCCTCTTTAAT+AGG - chr2_4:52565911-52565930 None:intergenic 35.0%
TCTCCAATGTAAACTAAAGG+GGG - chr2_4:52565974-52565993 None:intergenic 35.0%
CTCTCCAATGTAAACTAAAG+GGG - chr2_4:52565975-52565994 None:intergenic 35.0%
CCTCTCCAATGTAAACTAAA+GGG - chr2_4:52565976-52565995 None:intergenic 35.0%
TCCTCTCCAATGTAAACTAA+AGG - chr2_4:52565977-52565996 None:intergenic 35.0%
CCTTATTGTTATGGTAACAC+CGG + chr2_4:52566040-52566059 Msa0334270:intron 35.0%
TTTGAATAGATTCTTTGGGC+AGG + chr2_4:52566157-52566176 Msa0334270:intron 35.0%
TTGAATAGATTCTTTGGGCA+GGG + chr2_4:52566158-52566177 Msa0334270:intron 35.0%
TACAAGGATGATCTAAACAC+TGG - chr2_4:52566309-52566328 None:intergenic 35.0%
GCATATAGGACAAGTTATAC+AGG + chr2_4:52566725-52566744 Msa0334270:intron 35.0%
CTTAGTTAAATTGTCTGTGC+AGG + chr2_4:52567096-52567115 Msa0334270:intron 35.0%
!! CAAGAAAATTACTGGTTTCC+AGG + chr2_4:52567343-52567362 Msa0334270:CDS 35.0%
AACTGATGTAAGTTTCTTGC+AGG + chr2_4:52567660-52567679 Msa0334270:intron 35.0%
ATATATTGTTGCTGCAAGTG+AGG + chr2_4:52567734-52567753 Msa0334270:CDS 35.0%
! GACATGCATGATACATTTTC+TGG + chr2_4:52567900-52567919 Msa0334270:CDS 35.0%
TCGATAGAATTTCTGCAACA+TGG + chr2_4:52568084-52568103 Msa0334270:CDS 35.0%
! GCTAGAAGAAGTTTTTCTTC+CGG - chr2_4:52568110-52568129 None:intergenic 35.0%
GTCAGTATGGATTTCACAAA+TGG + chr2_4:52568152-52568171 Msa0334270:CDS 35.0%
CAGTATGGATTTCACAAATG+GGG + chr2_4:52568154-52568173 Msa0334270:CDS 35.0%
TAAGTCAAAAAATGTCAGCC+TGG + chr2_4:52568177-52568196 Msa0334270:CDS 35.0%
AAGTCAAAAAATGTCAGCCT+GGG + chr2_4:52568178-52568197 Msa0334270:CDS 35.0%
! GAAGTGGCAATCCAAAATTT+TGG - chr2_4:52568250-52568269 None:intergenic 35.0%
ATGGTCTCTTATATTCGAAG+TGG - chr2_4:52568266-52568285 None:intergenic 35.0%
TGTATGACTATATGTCACAG+CGG + chr2_4:52568294-52568313 Msa0334270:intron 35.0%
GTTTGTGTATGGTGAGAGAT+TGG - chr2_4:52563043-52563062 None:intergenic 40.0%
AAATTTCACACTCCCCCAAT+TGG + chr2_4:52563111-52563130 Msa0334270:five_prime_UTR 40.0%
!!! GGATTTTGAGATCCAATTGG+GGG - chr2_4:52563126-52563145 None:intergenic 40.0%
!!! GGAGGATTTTGAGATCCAAT+TGG - chr2_4:52563129-52563148 None:intergenic 40.0%
AACCACACTAACATTTGCTC+AGG + chr2_4:52563182-52563201 Msa0334270:five_prime_UTR 40.0%
ACCACACTAACATTTGCTCA+GGG + chr2_4:52563183-52563202 Msa0334270:five_prime_UTR 40.0%
ACTAACATTTGCTCAGGGAA+GGG + chr2_4:52563188-52563207 Msa0334270:five_prime_UTR 40.0%
GTTGAGATTGAGATTGGGAT+TGG - chr2_4:52563237-52563256 None:intergenic 40.0%
GGGTTGTTGAGATTGAGATT+GGG - chr2_4:52563242-52563261 None:intergenic 40.0%
! GTTGATGTTGTTGTTGGAGT+TGG - chr2_4:52563306-52563325 None:intergenic 40.0%
!! GTTGGTGTTGATGTTGTTGT+TGG - chr2_4:52563312-52563331 None:intergenic 40.0%
AAGAGGAGAGAGAGAGTAAA+CGG - chr2_4:52563372-52563391 None:intergenic 40.0%
! TTTCTTGGTCTTCGTCTTCT+TGG - chr2_4:52563423-52563442 None:intergenic 40.0%
CCCTTAACAGTTACGACATA+TGG + chr2_4:52563476-52563495 Msa0334270:CDS 40.0%
GGAATATGGCATTGTAAGGT+GGG - chr2_4:52563597-52563616 None:intergenic 40.0%
GATCGGAATATGGCATTGTA+AGG - chr2_4:52563601-52563620 None:intergenic 40.0%
GTCAGATTTGGATCGGAATA+TGG - chr2_4:52563611-52563630 None:intergenic 40.0%
TATGACCGTCAGATTTGGAT+CGG - chr2_4:52563618-52563637 None:intergenic 40.0%
GTTGTTATGACCGTCAGATT+TGG - chr2_4:52563623-52563642 None:intergenic 40.0%
CTAGAAGAATTCTTTCCGGA+CGG - chr2_4:52563745-52563764 None:intergenic 40.0%
TGGAATAAAGTGAAGGAGGT+TGG + chr2_4:52563934-52563953 Msa0334270:CDS 40.0%
GGAAATGGGAGTAATGGTAA+TGG + chr2_4:52564078-52564097 Msa0334270:CDS 40.0%
!! AATGGGAGTAATGGTAATGG+AGG + chr2_4:52564081-52564100 Msa0334270:CDS 40.0%
!! TGGTAATGGAGGTTGTTCTA+AGG + chr2_4:52564092-52564111 Msa0334270:CDS 40.0%
!! GGTAATGGAGGTTGTTCTAA+GGG + chr2_4:52564093-52564112 Msa0334270:CDS 40.0%
! GTAATGGAGGTTGTTCTAAG+GGG + chr2_4:52564094-52564113 Msa0334270:CDS 40.0%
!! TGTTCTAAGGGGAAGAAGAA+AGG + chr2_4:52564105-52564124 Msa0334270:CDS 40.0%
!! CAAGAGTGTTGCTAGTTCAA+TGG + chr2_4:52564149-52564168 Msa0334270:CDS 40.0%
TGATGAGAGAGATACTTCGT+CGG + chr2_4:52564197-52564216 Msa0334270:CDS 40.0%
CTACGGATGATAGTCAAGAT+GGG + chr2_4:52564247-52564266 Msa0334270:CDS 40.0%
AGTCAAGATGGGTCATTTCA+TGG + chr2_4:52564258-52564277 Msa0334270:CDS 40.0%
TTGTGTGATTCATGTTTGGC+AGG + chr2_4:52564431-52564450 Msa0334270:CDS 40.0%
! GTTGTTGCTTATGGAGAAAC+AGG + chr2_4:52564479-52564498 Msa0334270:CDS 40.0%
! ATTTCTTGTTAATGGGTCGC+CGG + chr2_4:52564524-52564543 Msa0334270:CDS 40.0%
ACTCAACGACTTCCTACTAA+CGG - chr2_4:52564613-52564632 None:intergenic 40.0%
TAGTAGGAAGTCGTTGAGTT+TGG + chr2_4:52564614-52564633 Msa0334270:CDS 40.0%
AGTGAGTGCAAACACATGTT+CGG - chr2_4:52564655-52564674 None:intergenic 40.0%
AAACCCGTTTGCTCCTTTAA+AGG + chr2_4:52564678-52564697 Msa0334270:CDS 40.0%
! TGACCTTTAAAGGAGCAAAC+GGG - chr2_4:52564684-52564703 None:intergenic 40.0%
TCACTCTTATATGGCATCGT+TGG + chr2_4:52564834-52564853 Msa0334270:intron 40.0%
TGACCGATGAACTGATGAAT+TGG + chr2_4:52564882-52564901 Msa0334270:intron 40.0%
!! TGGGTGGAATTGTTTTCAAG+TGG + chr2_4:52564973-52564992 Msa0334270:intron 40.0%
!!! TTGTTTTCAAGTGGCTGAAC+AGG + chr2_4:52564982-52565001 Msa0334270:intron 40.0%
ACTGCAATAATGCAACCGAA+AGG - chr2_4:52565170-52565189 None:intergenic 40.0%
TTGTGATTCTAGGCCTTTCT+TGG + chr2_4:52565349-52565368 Msa0334270:intron 40.0%
AAATGCCGTCTTTCCAAGAA+AGG - chr2_4:52565365-52565384 None:intergenic 40.0%
TGCTTTAGTGAACTGTGATG+TGG + chr2_4:52565512-52565531 Msa0334270:intron 40.0%
AAGCGGTAACTTACTTAGGA+TGG + chr2_4:52565559-52565578 Msa0334270:intron 40.0%
TGGTTATTTGTAACTTGGGG+TGG + chr2_4:52565579-52565598 Msa0334270:intron 40.0%
GGTTATTTGTAACTTGGGGT+GGG + chr2_4:52565580-52565599 Msa0334270:intron 40.0%
GTTATTTGTAACTTGGGGTG+GGG + chr2_4:52565581-52565600 Msa0334270:intron 40.0%
! CAAACACATTTGTTGAGCTG+GGG - chr2_4:52565744-52565763 None:intergenic 40.0%
GTAAACTAAAGGGGGAAGTT+TGG - chr2_4:52565966-52565985 None:intergenic 40.0%
! CTTCCCCCTTTAGTTTACAT+TGG + chr2_4:52565968-52565987 Msa0334270:intron 40.0%
! CCCTTTAGTTTACATTGGAG+AGG + chr2_4:52565973-52565992 Msa0334270:intron 40.0%
!! CCGGTGTTACCATAACAATA+AGG - chr2_4:52566043-52566062 None:intergenic 40.0%
TATTGTTATGGTAACACCGG+TGG + chr2_4:52566043-52566062 Msa0334270:intron 40.0%
ATTGTTATGGTAACACCGGT+GGG + chr2_4:52566044-52566063 Msa0334270:intron 40.0%
TGAATAGATTCTTTGGGCAG+GGG + chr2_4:52566159-52566178 Msa0334270:intron 40.0%
CTTCAATGGACAAAACAGTG+CGG + chr2_4:52566368-52566387 Msa0334270:CDS 40.0%
ATGACTGCAACTCAGGTTTA+GGG - chr2_4:52566500-52566519 None:intergenic 40.0%
GAATCAGATTGGATAGGGAT+AGG - chr2_4:52566641-52566660 None:intergenic 40.0%
! TTTGAGACCAATTATGCGCA+AGG + chr2_4:52566672-52566691 Msa0334270:intron 40.0%
AATTGTGCCTTGCGCATAAT+TGG - chr2_4:52566682-52566701 None:intergenic 40.0%
AAAAAAAACGGAGGGAACGA+GGG - chr2_4:52566806-52566825 None:intergenic 40.0%
GTTTCTATCTGCTTTCTGTC+TGG + chr2_4:52566849-52566868 Msa0334270:intron 40.0%
! TAGTGGATCTTTGGATGCTA+AGG + chr2_4:52566920-52566939 Msa0334270:CDS 40.0%
CAATCAACAACTTGTCGATC+CGG - chr2_4:52566963-52566982 None:intergenic 40.0%
TTGGATCGATCTTCATGAGA+TGG + chr2_4:52566980-52566999 Msa0334270:CDS 40.0%
TTGTTATACACCTGATGGTC+AGG + chr2_4:52567013-52567032 Msa0334270:CDS 40.0%
! TGCACTAGTTGGTTCATACA+AGG + chr2_4:52567120-52567139 Msa0334270:CDS 40.0%
! GCACTAGTTGGTTCATACAA+GGG + chr2_4:52567121-52567140 Msa0334270:CDS 40.0%
AATACATCTGGTACTGTCAG+AGG + chr2_4:52567160-52567179 Msa0334270:intron 40.0%
! TTTTATGAACAGTTTGCCCC+AGG + chr2_4:52567435-52567454 Msa0334270:intron 40.0%
TACTTCTGATGAACTTCCTG+GGG - chr2_4:52567454-52567473 None:intergenic 40.0%
GTACTTCTGATGAACTTCCT+GGG - chr2_4:52567455-52567474 None:intergenic 40.0%
AGTACTTCTGATGAACTTCC+TGG - chr2_4:52567456-52567475 None:intergenic 40.0%
!! CATCTGCTGATTCTCGAATA+CGG + chr2_4:52567481-52567500 Msa0334270:CDS 40.0%
!! ATCTGCTGATTCTCGAATAC+GGG + chr2_4:52567482-52567501 Msa0334270:CDS 40.0%
!! GGTTGTTGATGGTATTGATC+TGG + chr2_4:52567503-52567522 Msa0334270:CDS 40.0%
TCAGTTTGATCAGCACGAAT+TGG - chr2_4:52567646-52567665 None:intergenic 40.0%
AGGATTCCCATGTATACATC+TGG + chr2_4:52567754-52567773 Msa0334270:CDS 40.0%
GTGACACCTTTACTTCTGTT+GGG - chr2_4:52567801-52567820 None:intergenic 40.0%
ATGTTCATAGGACTGTGTCA+CGG - chr2_4:52567823-52567842 None:intergenic 40.0%
! AAGTTTTCCTCTACAGGTGT+AGG - chr2_4:52567981-52568000 None:intergenic 40.0%
ACACCTGTAGAGGAAAACTT+CGG + chr2_4:52567981-52568000 Msa0334270:CDS 40.0%
TAGAATTTCTGCAACATGGC+CGG + chr2_4:52568088-52568107 Msa0334270:CDS 40.0%
TGAAATCCATACTGACACGA+GGG - chr2_4:52568148-52568167 None:intergenic 40.0%
AGTCAAAAAATGTCAGCCTG+GGG + chr2_4:52568179-52568198 Msa0334270:CDS 40.0%
! TTTTTGCCAGCTTATGGAGA+AGG - chr2_4:52568359-52568378 None:intergenic 40.0%
! TACAGGTTTTTGCCAGCTTA+TGG - chr2_4:52568365-52568384 None:intergenic 40.0%
TCCCTGAGCAAATGTTAGTG+TGG - chr2_4:52563187-52563206 None:intergenic 45.0%
CACTAACATTTGCTCAGGGA+AGG + chr2_4:52563187-52563206 Msa0334270:five_prime_UTR 45.0%
GGGGTTGTTGAGATTGAGAT+TGG - chr2_4:52563243-52563262 None:intergenic 45.0%
TTCTTGGTCAGAGTTGGAGT+TGG - chr2_4:52563407-52563426 None:intergenic 45.0%
TTCGTCTTCTTGGTCAGAGT+TGG - chr2_4:52563413-52563432 None:intergenic 45.0%
!! ACGAGTACGACGTTCTGAAA+CGG - chr2_4:52563518-52563537 None:intergenic 45.0%
ACCACGTGAAAGGGCAAAAT+CGG - chr2_4:52563566-52563585 None:intergenic 45.0%
GATTGGGTTACCACGTGAAA+GGG - chr2_4:52563575-52563594 None:intergenic 45.0%
TGGCATTGTAAGGTGGGATT+GGG - chr2_4:52563591-52563610 None:intergenic 45.0%
ATGGCATTGTAAGGTGGGAT+TGG - chr2_4:52563592-52563611 None:intergenic 45.0%
CGGAATATGGCATTGTAAGG+TGG - chr2_4:52563598-52563617 None:intergenic 45.0%
AGTACTGTTCCCGGTAATTC+TGG + chr2_4:52563700-52563719 Msa0334270:CDS 45.0%
!! TTCCGGTGTTGATTTCTTGC+CGG + chr2_4:52563774-52563793 Msa0334270:CDS 45.0%
GGCAAAGTAGAAGAATTCCC+CGG - chr2_4:52563796-52563815 None:intergenic 45.0%
GGGGAATTCTTCTACTTTGC+CGG + chr2_4:52563795-52563814 Msa0334270:CDS 45.0%
TTCTTCTACTTTGCCGGACA+CGG + chr2_4:52563801-52563820 Msa0334270:CDS 45.0%
CATTCTATTTCACCCGTGTC+CGG - chr2_4:52563817-52563836 None:intergenic 45.0%
!! AAAGTGAAGGAGGTTGGTAC+TGG + chr2_4:52563940-52563959 Msa0334270:CDS 45.0%
!! AAGTGAAGGAGGTTGGTACT+GGG + chr2_4:52563941-52563960 Msa0334270:CDS 45.0%
TACTGGGAGACAGTTGACTA+TGG + chr2_4:52563957-52563976 Msa0334270:CDS 45.0%
! GAGGAATTTGAGATGACGGT+TGG + chr2_4:52563979-52563998 Msa0334270:CDS 45.0%
! GGTGTTGGAAATGGGAGTAA+TGG + chr2_4:52564072-52564091 Msa0334270:CDS 45.0%
TCTAAGGGGAAGAAGAAAGG+AGG + chr2_4:52564108-52564127 Msa0334270:CDS 45.0%
CTAAGGGGAAGAAGAAAGGA+GGG + chr2_4:52564109-52564128 Msa0334270:CDS 45.0%
! GAGTGTTGCTAGTTCAATGG+CGG + chr2_4:52564152-52564171 Msa0334270:CDS 45.0%
! AGTGTTGCTAGTTCAATGGC+GGG + chr2_4:52564153-52564172 Msa0334270:CDS 45.0%
!! TAGTTCAATGGCGGGTCATA+AGG + chr2_4:52564161-52564180 Msa0334270:CDS 45.0%
AGAGATACTTCGTCGGAGAA+AGG + chr2_4:52564204-52564223 Msa0334270:CDS 45.0%
GCTACGGATGATAGTCAAGA+TGG + chr2_4:52564246-52564265 Msa0334270:CDS 45.0%
GTCATTTCATGGACCTGAGA+GGG + chr2_4:52564269-52564288 Msa0334270:CDS 45.0%
AGGGTGAGAGTGAGACAATA+TGG + chr2_4:52564288-52564307 Msa0334270:CDS 45.0%
GGGTGAGAGTGAGACAATAT+GGG + chr2_4:52564289-52564308 Msa0334270:CDS 45.0%
GGGAAATATCTTGCTAGTGC+TGG + chr2_4:52564402-52564421 Msa0334270:CDS 45.0%
!! ATATCTTGCTAGTGCTGGTG+AGG + chr2_4:52564407-52564426 Msa0334270:CDS 45.0%
GATTCATGTTTGGCAGGTTG+TGG + chr2_4:52564437-52564456 Msa0334270:CDS 45.0%
TTGTGGAGTCTGAGAGGAAA+GGG + chr2_4:52564454-52564473 Msa0334270:CDS 45.0%
! GAAAGGGGAGTTGTTGCTTA+TGG + chr2_4:52564470-52564489 Msa0334270:CDS 45.0%
GTTGCTTATGGAGAAACAGG+AGG + chr2_4:52564482-52564501 Msa0334270:CDS 45.0%
! TCCTTTGGCGGATAATCTTC+TGG + chr2_4:52564563-52564582 Msa0334270:CDS 45.0%
TCCAGAAGATTATCCGCCAA+AGG - chr2_4:52564567-52564586 None:intergenic 45.0%
! TCTTCTGGAGAGGAAGAGAA+AGG + chr2_4:52564578-52564597 Msa0334270:CDS 45.0%
! CTTCTGGAGAGGAAGAGAAA+GGG + chr2_4:52564579-52564598 Msa0334270:CDS 45.0%
! TTCTGGAGAGGAAGAGAAAG+GGG + chr2_4:52564580-52564599 Msa0334270:CDS 45.0%
GTTGAGTTTGGACCAGTTTG+TGG + chr2_4:52564626-52564645 Msa0334270:CDS 45.0%
GTGAGTGCAAACACATGTTC+GGG - chr2_4:52564654-52564673 None:intergenic 45.0%
ATGATGTGCTTGACCTCTCT+TGG + chr2_4:52564709-52564728 Msa0334270:CDS 45.0%
! GCTGAGTGTTTTCGATGACT+TGG + chr2_4:52564786-52564805 Msa0334270:intron 45.0%
GAATCACAACGTAACTCCGT+TGG - chr2_4:52565338-52565357 None:intergenic 45.0%
CGGAGTTACGTTGTGATTCT+AGG + chr2_4:52565339-52565358 Msa0334270:intron 45.0%
CTAGGCCTTTCTTGGAAAGA+CGG + chr2_4:52565357-52565376 Msa0334270:intron 45.0%
GAGGCAACTTACACACAACA+TGG + chr2_4:52565402-52565421 Msa0334270:intron 45.0%
TTCTTTGGGCAGGGGTTTAT+TGG + chr2_4:52566167-52566186 Msa0334270:intron 45.0%
GCACTTGCTCTCATCTTCAA+TGG + chr2_4:52566354-52566373 Msa0334270:intron 45.0%
CATGACTGCAACTCAGGTTT+AGG - chr2_4:52566501-52566520 None:intergenic 45.0%
AACCTGAGTTGCAGTCATGT+AGG + chr2_4:52566502-52566521 Msa0334270:intron 45.0%
GAAAAAAAACGGAGGGAACG+AGG - chr2_4:52566807-52566826 None:intergenic 45.0%
TGGATGCTAAGGTTCGCATA+TGG + chr2_4:52566931-52566950 Msa0334270:CDS 45.0%
CGGATCGACAAGTTGTTGAT+TGG + chr2_4:52566961-52566980 Msa0334270:CDS 45.0%
!! GCTGCTTGTTATACACCTGA+TGG + chr2_4:52567008-52567027 Msa0334270:CDS 45.0%
TATACACCTGATGGTCAGGT+TGG + chr2_4:52567017-52567036 Msa0334270:intron 45.0%
ATTCTGACAATTGTGGCCAC+TGG + chr2_4:52567230-52567249 Msa0334270:intron 45.0%
! TCTCGAATACGGGTTGTTGA+TGG + chr2_4:52567492-52567511 Msa0334270:CDS 45.0%
!! TTTACCATTTGCTGTGAGGG+AGG - chr2_4:52567715-52567734 None:intergenic 45.0%
GGAAAAATGAAGCCGATTGC+AGG + chr2_4:52567775-52567794 Msa0334270:CDS 45.0%
GGTGACACCTTTACTTCTGT+TGG - chr2_4:52567802-52567821 None:intergenic 45.0%
GTCGTTGTTGCTATCAAGCT+CGG - chr2_4:52567934-52567953 None:intergenic 45.0%
TACAGGTGTAGGAGGATGAT+TGG - chr2_4:52567970-52567989 None:intergenic 45.0%
! TTTTCCTCTACAGGTGTAGG+AGG - chr2_4:52567978-52567997 None:intergenic 45.0%
! ACACCGAAGTTTTCCTCTAC+AGG - chr2_4:52567987-52568006 None:intergenic 45.0%
GTGAAATCCATACTGACACG+AGG - chr2_4:52568149-52568168 None:intergenic 45.0%
AAAAATGTCAGCCTGGGGTA+TGG + chr2_4:52568184-52568203 Msa0334270:CDS 45.0%
AGTAACAATCACCATACCCC+AGG - chr2_4:52568198-52568217 None:intergenic 45.0%
GGTATGGTGATTGTTACTGC+TGG + chr2_4:52568200-52568219 Msa0334270:CDS 45.0%
!! ATTGTTACTGCTGGTCTTCG+AGG + chr2_4:52568209-52568228 Msa0334270:CDS 45.0%
!! CGAGTTGATATCAGCTCAGA+AGG + chr2_4:52568321-52568340 Msa0334270:CDS 45.0%
AGATCACCTTCTCCATAAGC+TGG + chr2_4:52568350-52568369 Msa0334270:CDS 45.0%
! AGAGATTGGAGCGAGGTGTT+GGG - chr2_4:52563029-52563048 None:intergenic 50.0%
TATGGTGAGAGATTGGAGCG+AGG - chr2_4:52563036-52563055 None:intergenic 50.0%
GTTGGAACAAGAGCAGGAAG+AGG - chr2_4:52563389-52563408 None:intergenic 50.0%
GTTGGAGTTGGAACAAGAGC+AGG - chr2_4:52563395-52563414 None:intergenic 50.0%
!! CGACGTTCTGAAACGGAAGA+AGG - chr2_4:52563511-52563530 None:intergenic 50.0%
! TCCGATTTTGCCCTTTCACG+TGG + chr2_4:52563562-52563581 Msa0334270:CDS 50.0%
GGATTGGGTTACCACGTGAA+AGG - chr2_4:52563576-52563595 None:intergenic 50.0%
ACTGTTCCCGGTAATTCTGG+CGG + chr2_4:52563703-52563722 Msa0334270:CDS 50.0%
GAAGAATTCTTTCCGGACGG+AGG - chr2_4:52563742-52563761 None:intergenic 50.0%
!! TCCGGTGTTGATTTCTTGCC+GGG + chr2_4:52563775-52563794 Msa0334270:CDS 50.0%
TCTTCTACTTTGCCGGACAC+GGG + chr2_4:52563802-52563821 Msa0334270:CDS 50.0%
TGGGAGACAGTTGACTATGG+AGG + chr2_4:52563960-52563979 Msa0334270:CDS 50.0%
TGGTCAATCTCCGATTGTGC+AGG + chr2_4:52563999-52564018 Msa0334270:CDS 50.0%
CGCATAAGCTCCTGCACAAT+CGG - chr2_4:52564012-52564031 None:intergenic 50.0%
GGAAGAAGAAAGGAGGGAGT+TGG + chr2_4:52564115-52564134 Msa0334270:CDS 50.0%
GATACTTCGTCGGAGAAAGG+CGG + chr2_4:52564207-52564226 Msa0334270:CDS 50.0%
ATACTTCGTCGGAGAAAGGC+GGG + chr2_4:52564208-52564227 Msa0334270:CDS 50.0%
GGTCATTTCATGGACCTGAG+AGG + chr2_4:52564268-52564287 Msa0334270:CDS 50.0%
GTTGTGGAGTCTGAGAGGAA+AGG + chr2_4:52564453-52564472 Msa0334270:CDS 50.0%
TGTGGAGTCTGAGAGGAAAG+GGG + chr2_4:52564455-52564474 Msa0334270:CDS 50.0%
! TGGCGGATAATCTTCTGGAG+AGG + chr2_4:52564568-52564587 Msa0334270:CDS 50.0%
CATGTTCGGGAACCACAAAC+TGG - chr2_4:52564641-52564660 None:intergenic 50.0%
CCTGAGACTTAGACCAAGAG+AGG - chr2_4:52564725-52564744 None:intergenic 50.0%
CCTCTCTTGGTCTAAGTCTC+AGG + chr2_4:52564722-52564741 Msa0334270:CDS 50.0%
AAGTGGCTGAACAGGCATCA+AGG + chr2_4:52564990-52565009 Msa0334270:intron 50.0%
AGTGGCTGAACAGGCATCAA+GGG + chr2_4:52564991-52565010 Msa0334270:intron 50.0%
CCTACTTGTTCCCACAGTAC+AGG - chr2_4:52565201-52565220 None:intergenic 50.0%
CCTGTACTGTGGGAACAAGT+AGG + chr2_4:52565198-52565217 Msa0334270:intron 50.0%
! GGTTCGCATATGGAGCATTC+CGG + chr2_4:52566941-52566960 Msa0334270:CDS 50.0%
CTTGAACCAACCTGACCATC+AGG - chr2_4:52567026-52567045 None:intergenic 50.0%
!! CTGATGGTCAGGTTGGTTCA+AGG + chr2_4:52567024-52567043 Msa0334270:intron 50.0%
ACTTCTGTTGGGCCTGCAAT+CGG - chr2_4:52567790-52567809 None:intergenic 50.0%
TGCAGGCCCAACAGAAGTAA+AGG + chr2_4:52567792-52567811 Msa0334270:CDS 50.0%
ATGTGTCAGTAGCCATTCCC+TGG + chr2_4:52567856-52567875 Msa0334270:CDS 50.0%
TCATCCTCCTACACCTGTAG+AGG + chr2_4:52567971-52567990 Msa0334270:CDS 50.0%
!! AGAGGAAAACTTCGGTGTCG+AGG + chr2_4:52567989-52568008 Msa0334270:CDS 50.0%
!! GAGGAAAACTTCGGTGTCGA+GGG + chr2_4:52567990-52568009 Msa0334270:CDS 50.0%
ACTGTTTGTCGCACTCGCAA+TGG - chr2_4:52568057-52568076 None:intergenic 50.0%
TCAAAGCCCTCGTGTCAGTA+TGG + chr2_4:52568139-52568158 Msa0334270:CDS 50.0%
!! GAGATTGGAGCGAGGTGTTG+GGG - chr2_4:52563028-52563047 None:intergenic 55.0%
GAGAGATTGGAGCGAGGTGT+TGG - chr2_4:52563030-52563049 None:intergenic 55.0%
TTTCCGGACGGAGGTTTAGC+CGG - chr2_4:52563733-52563752 None:intergenic 55.0%
CCCCGGCAAGAAATCAACAC+CGG - chr2_4:52563779-52563798 None:intergenic 55.0%
!! CCGGTGTTGATTTCTTGCCG+GGG + chr2_4:52563776-52563795 Msa0334270:CDS 55.0%
TTGTGCAGGAGCTTATGCGC+CGG + chr2_4:52564013-52564032 Msa0334270:CDS 55.0%
! TATGCGCCGGCAGAATCATG+AGG + chr2_4:52564026-52564045 Msa0334270:CDS 55.0%
CGGTCTCCTCATGATTCTGC+CGG - chr2_4:52564035-52564054 None:intergenic 55.0%
CGGCAGAATCATGAGGAGAC+CGG + chr2_4:52564033-52564052 Msa0334270:CDS 55.0%
CCCATTTCCAACACCACCAC+CGG - chr2_4:52564067-52564086 None:intergenic 55.0%
! CCGGTGGTGGTGTTGGAAAT+GGG + chr2_4:52564064-52564083 Msa0334270:CDS 55.0%
!! CAATGGCGGGTCATAAGGAG+AGG + chr2_4:52564166-52564185 Msa0334270:CDS 55.0%
TGTCTCACTCTCACCCTCTC+AGG - chr2_4:52564285-52564304 None:intergenic 55.0%
ACCCGTGACGTTGTCTCCTT+TGG + chr2_4:52564548-52564567 Msa0334270:CDS 55.0%
GCCAAAGGAGACAACGTCAC+GGG - chr2_4:52564552-52564571 None:intergenic 55.0%
CGCCAAAGGAGACAACGTCA+CGG - chr2_4:52564553-52564572 None:intergenic 55.0%
CGTGACGTTGTCTCCTTTGG+CGG + chr2_4:52564551-52564570 Msa0334270:CDS 55.0%
TGGAGAGGAAGAGAAAGGGG+AGG + chr2_4:52564583-52564602 Msa0334270:CDS 55.0%
TGGACAAAACAGTGCGGCTG+TGG + chr2_4:52566374-52566393 Msa0334270:CDS 55.0%
GGCCTACATGACTGCAACTC+AGG - chr2_4:52566507-52566526 None:intergenic 55.0%
TCTGTGCAGGGTGCACTAGT+TGG + chr2_4:52567109-52567128 Msa0334270:intron 55.0%
CTGTGAGGGAGGCTGAAATC+TGG - chr2_4:52567704-52567723 None:intergenic 55.0%
TCAGCCTCCCTCACAGCAAA+TGG + chr2_4:52567708-52567727 Msa0334270:CDS 55.0%
GCCTGGTATGGGTGATGCAT+GGG + chr2_4:52567878-52567897 Msa0334270:CDS 55.0%
TCCCATGCATCACCCATACC+AGG - chr2_4:52567882-52567901 None:intergenic 55.0%
GAGGGTTCACGATCTGCTTC+AGG + chr2_4:52568008-52568027 Msa0334270:CDS 55.0%
CTCGCAATGGTTGCATGGTG+TGG - chr2_4:52568044-52568063 None:intergenic 55.0%
TCGCACTCGCAATGGTTGCA+TGG - chr2_4:52568049-52568068 None:intergenic 55.0%
!! TGGAGCGAGGTGTTGGGGTT+CGG - chr2_4:52563023-52563042 None:intergenic 60.0%
GGGGATCCGCCAGAATTACC+GGG - chr2_4:52563712-52563731 None:intergenic 60.0%
CGGGGATCCGCCAGAATTAC+CGG - chr2_4:52563713-52563732 None:intergenic 60.0%
! CGGTAATTCTGGCGGATCCC+CGG + chr2_4:52563711-52563730 Msa0334270:CDS 60.0%
TTCCGGACGGAGGTTTAGCC+GGG - chr2_4:52563732-52563751 None:intergenic 60.0%
GAGGAGACCGGTGATGTAGC+CGG + chr2_4:52564045-52564064 Msa0334270:CDS 60.0%
! ACCACCACCGGCTACATCAC+CGG - chr2_4:52564055-52564074 None:intergenic 60.0%
! GATGTAGCCGGTGGTGGTGT+TGG + chr2_4:52564057-52564076 Msa0334270:CDS 60.0%
! GCCGGTGGTGGTGTTGGAAA+TGG + chr2_4:52564063-52564082 Msa0334270:CDS 60.0%
! TGGCGGGTCATAAGGAGAGG+AGG + chr2_4:52564169-52564188 Msa0334270:CDS 60.0%
GGCAGGTTGTGGAGTCTGAG+AGG + chr2_4:52564448-52564467 Msa0334270:CDS 60.0%
GGAGACAACGTCACGGGTTC+CGG - chr2_4:52564546-52564565 None:intergenic 60.0%
AGGGGAGGTCGTCCGTTAGT+AGG + chr2_4:52564598-52564617 Msa0334270:CDS 60.0%
GGTGCTCATGCTAGTCCCAC+CGG - chr2_4:52566062-52566081 None:intergenic 60.0%
! GGGACTAGCATGAGCACCTC+TGG + chr2_4:52566064-52566083 Msa0334270:intron 60.0%
TCAGTAGCCATTCCCTGGCC+TGG + chr2_4:52567861-52567880 Msa0334270:CDS 60.0%
AGCCATTCCCTGGCCTGGTA+TGG + chr2_4:52567866-52567885 Msa0334270:CDS 60.0%
GCCATTCCCTGGCCTGGTAT+GGG + chr2_4:52567867-52567886 Msa0334270:CDS 60.0%
ACCCATACCAGGCCAGGGAA+TGG - chr2_4:52567871-52567890 None:intergenic 60.0%
GCATCACCCATACCAGGCCA+GGG - chr2_4:52567876-52567895 None:intergenic 60.0%
TGCATCACCCATACCAGGCC+AGG - chr2_4:52567877-52567896 None:intergenic 60.0%
GGCCTGGTATGGGTGATGCA+TGG + chr2_4:52567877-52567896 Msa0334270:CDS 60.0%
TCCCCGGCTAAACCTCCGTC+CGG + chr2_4:52563727-52563746 Msa0334270:CDS 65.0%
TCCGGACGGAGGTTTAGCCG+GGG - chr2_4:52563731-52563750 None:intergenic 65.0%
GAGACCGGTGATGTAGCCGG+TGG + chr2_4:52564048-52564067 Msa0334270:CDS 65.0%
ACCGGTGATGTAGCCGGTGG+TGG + chr2_4:52564051-52564070 Msa0334270:CDS 65.0%
CTTCGTCGGAGAAAGGCGGG+AGG + chr2_4:52564211-52564230 Msa0334270:CDS 65.0%
GAGGAGGTCGAGCTCGGCTA+CGG + chr2_4:52564230-52564249 Msa0334270:CDS 65.0%
CGTCGGAGAAAGGCGGGAGG+AGG + chr2_4:52564214-52564233 Msa0334270:CDS 70.0%
AGGCGGGAGGAGGTCGAGCT+CGG + chr2_4:52564224-52564243 Msa0334270:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 52563000 52568399 52563000 ID=Msa0334270;Name=Msa0334270
chr2_4 mRNA 52563000 52568399 52563000 ID=Msa0334270-mRNA-1;Parent=Msa0334270;Name=Msa0334270-mRNA-1;_AED=0.07;_eAED=0.07;_QI=271|0.85|0.75|1|1|1|8|0|861
chr2_4 exon 52563000 52564743 52563000 ID=Msa0334270-mRNA-1:exon:15801;Parent=Msa0334270-mRNA-1
chr2_4 exon 52566355 52566445 52566355 ID=Msa0334270-mRNA-1:exon:15802;Parent=Msa0334270-mRNA-1
chr2_4 exon 52566877 52567034 52566877 ID=Msa0334270-mRNA-1:exon:15803;Parent=Msa0334270-mRNA-1
chr2_4 exon 52567118 52567169 52567118 ID=Msa0334270-mRNA-1:exon:15804;Parent=Msa0334270-mRNA-1
chr2_4 exon 52567282 52567364 52567282 ID=Msa0334270-mRNA-1:exon:15805;Parent=Msa0334270-mRNA-1
chr2_4 exon 52567447 52567540 52567447 ID=Msa0334270-mRNA-1:exon:15806;Parent=Msa0334270-mRNA-1
chr2_4 exon 52567682 52568230 52567682 ID=Msa0334270-mRNA-1:exon:15807;Parent=Msa0334270-mRNA-1
chr2_4 exon 52568314 52568399 52568314 ID=Msa0334270-mRNA-1:exon:15808;Parent=Msa0334270-mRNA-1
chr2_4 five_prime_UTR 52563000 52563270 52563000 ID=Msa0334270-mRNA-1:five_prime_utr;Parent=Msa0334270-mRNA-1
chr2_4 CDS 52563271 52564743 52563271 ID=Msa0334270-mRNA-1:cds;Parent=Msa0334270-mRNA-1
chr2_4 CDS 52566355 52566445 52566355 ID=Msa0334270-mRNA-1:cds;Parent=Msa0334270-mRNA-1
chr2_4 CDS 52566877 52567034 52566877 ID=Msa0334270-mRNA-1:cds;Parent=Msa0334270-mRNA-1
chr2_4 CDS 52567118 52567169 52567118 ID=Msa0334270-mRNA-1:cds;Parent=Msa0334270-mRNA-1
chr2_4 CDS 52567282 52567364 52567282 ID=Msa0334270-mRNA-1:cds;Parent=Msa0334270-mRNA-1
chr2_4 CDS 52567447 52567540 52567447 ID=Msa0334270-mRNA-1:cds;Parent=Msa0334270-mRNA-1
chr2_4 CDS 52567682 52568230 52567682 ID=Msa0334270-mRNA-1:cds;Parent=Msa0334270-mRNA-1
chr2_4 CDS 52568314 52568399 52568314 ID=Msa0334270-mRNA-1:cds;Parent=Msa0334270-mRNA-1
Gene Sequence

>Msa0334270

ATGAACAAACCCATTCTCATTTCTCAAGAAGACCAACTCCAACAACAACATCAACACCAACAACTAGACCAACAAGATTTCTTCTACGAATCAAACGACCGTTTACTCTCTCTCTCCTCTTCCTGCTCTTGTTCCAACTCCAACTCTGACCAAGAAGACGAAGACCAAGAAAACAACAACAACAATAATTGTAATTACAATTTTGCCCTTAACAGTTACGACATATGGATCTCTCAACCTTCTTCCGTTTCAGAACGTCGTACTCGTCTTCTTCAAACTATTGGTCTTTCTTCCGATTTTGCCCTTTCACGTGGTAACCCAATCCCACCTTACAATGCCATATTCCGATCCAAATCTGACGGTCATAACAACAACAACAATTCTAACAACAACTCCTGTTTTATCTCTTCTTCTACTGTAAATGTAAATAGTACTGTTCCCGGTAATTCTGGCGGATCCCCGGCTAAACCTCCGTCCGGAAAGAATTCTTCTAGAAGAAGTCATTCCGGTGTTGATTTCTTGCCGGGGAATTCTTCTACTTTGCCGGACACGGGTGAAATAGAATGCGATGAAATTGAAAAAGGGGAAGAACAAGCTTGTACCATAAGAGATCTTGATAATGGAAAAGAATTTGTTGTGAAAGAAGTTAGAGAAGATGGAATGTGGAATAAAGTGAAGGAGGTTGGTACTGGGAGACAGTTGACTATGGAGGAATTTGAGATGACGGTTGGTCAATCTCCGATTGTGCAGGAGCTTATGCGCCGGCAGAATCATGAGGAGACCGGTGATGTAGCCGGTGGTGGTGTTGGAAATGGGAGTAATGGTAATGGAGGTTGTTCTAAGGGGAAGAAGAAAGGAGGGAGTTGGTTGAAGAGTATCAAGAGTGTTGCTAGTTCAATGGCGGGTCATAAGGAGAGGAGGAGTAGTGATGAGAGAGATACTTCGTCGGAGAAAGGCGGGAGGAGGTCGAGCTCGGCTACGGATGATAGTCAAGATGGGTCATTTCATGGACCTGAGAGGGTGAGAGTGAGACAATATGGGAAATCATGTAAAGAGTTAACTGCATTGTATAAGAGTCAAGAGATTCAAGCTCATAATGGATCAATTTGGAGTATTAAGTTTAGTTTAGATGGGAAATATCTTGCTAGTGCTGGTGAGGATTGTGTGATTCATGTTTGGCAGGTTGTGGAGTCTGAGAGGAAAGGGGAGTTGTTGCTTATGGAGAAACAGGAGGATGTTAATGTTAATATGTTATTTCTTGTTAATGGGTCGCCGGAACCCGTGACGTTGTCTCCTTTGGCGGATAATCTTCTGGAGAGGAAGAGAAAGGGGAGGTCGTCCGTTAGTAGGAAGTCGTTGAGTTTGGACCAGTTTGTGGTTCCCGAACATGTGTTTGCACTCACTGAAAAACCCGTTTGCTCCTTTAAAGGTCATTTGCATGATGTGCTTGACCTCTCTTGGTCTAAGTCTCAGCACTTGCTCTCATCTTCAATGGACAAAACAGTGCGGCTGTGGCATTTGTCTAGCAAGTCTTGTTTGAAGATTTTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCGGATCGACAAGTTGTTGATTGGATCGATCTTCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGGTGCACTAGTTGGTTCATACAAGGGTAGCTGTCATTTATATAATACATCTGAAAATAAGTTGCAACAGAAAAGTCAGATCAATCTGCAGAACAAGAAAAAGAAATCAAATCACAAGAAAATTACTGGTTTCCAGTTTGCCCCAGGAAGTTCATCAGAAGTACTTATCACATCTGCTGATTCTCGAATACGGGTTGTTGATGGTATTGATCTGGTTCATAAGTTTAAAGGCTTTCGAAATGCAAGTAGCCAGATTTCAGCCTCCCTCACAGCAAATGGTAAATATATTGTTGCTGCAAGTGAGGATTCCCATGTATACATCTGGAAAAATGAAGCCGATTGCAGGCCCAACAGAAGTAAAGGTGTCACCGTGACACAGTCCTATGAACATTTTCACTGTAAAGATGTGTCAGTAGCCATTCCCTGGCCTGGTATGGGTGATGCATGGGACATGCATGATACATTTTCTGGAGCACAAACCGAGCTTGATAGCAACAACGACGAAATCGCATCAGCCAATCATCCTCCTACACCTGTAGAGGAAAACTTCGGTGTCGAGGGTTCACGATCTGCTTCAGGTTATAATAGTCCACACCATGCAACCATTGCGAGTGCGACAAACAGTTACTTCTTCGATAGAATTTCTGCAACATGGCCGGAAGAAAAACTTCTTCTAGCTGCAAGAAATCAAAGCCCTCGTGTCAGTATGGATTTCACAAATGGGGTAAGTCAAAAAATGTCAGCCTGGGGTATGGTGATTGTTACTGCTGGTCTTCGAGCGGAGAGCGAGTTGATATCAGCTCAGAAGGCAGTTGAGATCACCTTCTCCATAAGCTGGCAAAAACCTGTACAGAAAAGTGAGTGA
Protein sequence

>Msa0334270

MNKPILISQEDQLQQQHQHQQLDQQDFFYESNDRLLSLSSSCSCSNSNSDQEDEDQENNNNNNCNYNFALNSYDIWISQPSSVSERRTRLLQTIGLSSDFALSRGNPIPPYNAIFRSKSDGHNNNNNSNNNSCFISSSTVNVNSTVPGNSGGSPAKPPSGKNSSRRSHSGVDFLPGNSSTLPDTGEIECDEIEKGEEQACTIRDLDNGKEFVVKEVREDGMWNKVKEVGTGRQLTMEEFEMTVGQSPIVQELMRRQNHEETGDVAGGGVGNGSNGNGGCSKGKKKGGSWLKSIKSVASSMAGHKERRSSDERDTSSEKGGRRSSSATDDSQDGSFHGPERVRVRQYGKSCKELTALYKSQEIQAHNGSIWSIKFSLDGKYLASAGEDCVIHVWQVVESERKGELLLMEKQEDVNVNMLFLVNGSPEPVTLSPLADNLLERKRKGRSSVSRKSLSLDQFVVPEHVFALTEKPVCSFKGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWIDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSNHKKITGFQFAPGSSSEVLITSADSRIRVVDGIDLVHKFKGFRNASSQISASLTANGKYIVAASEDSHVYIWKNEADCRPNRSKGVTVTQSYEHFHCKDVSVAIPWPGMGDAWDMHDTFSGAQTELDSNNDEIASANHPPTPVEENFGVEGSRSASGYNSPHHATIASATNSYFFDRISATWPEEKLLLAARNQSPRVSMDFTNGVSQKMSAWGMVIVTAGLRAESELISAQKAVEITFSISWQKPVQKSE*