Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299430 | XP_013465033.1 | 94.632 | 503 | 25 | 2 | 1 | 503 | 1 | 501 | 0.0 | 944 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299430 | sp|Q8S8I1|QWRF3_ARATH | 38.378 | 370 | 189 | 9 | 151 | 483 | 101 | 468 | 1.39e-72 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299430 | A0A072VC90 | 94.632 | 503 | 25 | 2 | 1 | 503 | 1 | 501 | 0.0 | 944 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0251240 | Msa0299430 | 0.806891 | 6.598724e-50 | -8.615850e-47 |
| Msa0299430 | Msa0531430 | 0.809840 | 1.550648e-50 | -8.615850e-47 |
| Msa0299430 | Msa0534590 | 0.821117 | 4.787379e-53 | -8.615850e-47 |
| Msa0299430 | Msa0631120 | 0.812186 | 4.812815e-51 | -8.615850e-47 |
| Msa0299430 | Msa0669340 | 0.823873 | 1.095542e-53 | -8.615850e-47 |
| Msa0299430 | Msa0717260 | 0.803462 | 3.446942e-49 | -8.615850e-47 |
| Msa0299430 | Msa0853320 | 0.811450 | 6.958555e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299430 | MtrunA17_Chr2g0323821 | 94.632 | 503 | 25 | 2 | 1 | 503 | 1 | 501 | 0.0 | 944 |
| Msa0299430 | MtrunA17_Chr3g0079101 | 28.405 | 257 | 161 | 2 | 243 | 484 | 119 | 367 | 6.53e-28 | 114 |
| Msa0299430 | MtrunA17_Chr1g0207481 | 28.807 | 243 | 169 | 3 | 246 | 485 | 369 | 610 | 6.90e-28 | 117 |
| Msa0299430 | MtrunA17_Chr4g0073681 | 33.333 | 225 | 133 | 3 | 266 | 486 | 399 | 610 | 9.47e-27 | 114 |
| Msa0299430 | MtrunA17_Chr1g0152681 | 29.876 | 241 | 166 | 2 | 256 | 493 | 381 | 621 | 2.87e-26 | 112 |
| Msa0299430 | MtrunA17_Chr2g0291221 | 27.451 | 204 | 148 | 0 | 288 | 491 | 283 | 486 | 1.11e-19 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299430 | AT2G20815.1 | 38.378 | 370 | 189 | 9 | 151 | 483 | 101 | 468 | 1.42e-73 | 241 |
| Msa0299430 | AT2G20815.2 | 38.275 | 371 | 189 | 10 | 151 | 483 | 72 | 440 | 6.07e-72 | 236 |
| Msa0299430 | AT2G20815.3 | 38.275 | 371 | 189 | 10 | 151 | 483 | 101 | 469 | 8.34e-72 | 236 |
| Msa0299430 | AT2G20815.4 | 33.520 | 358 | 175 | 9 | 151 | 483 | 72 | 391 | 3.30e-54 | 187 |
| Msa0299430 | AT4G30710.3 | 32.727 | 220 | 136 | 3 | 266 | 484 | 412 | 620 | 4.78e-29 | 121 |
| Msa0299430 | AT4G30710.1 | 32.727 | 220 | 136 | 3 | 266 | 484 | 412 | 620 | 4.78e-29 | 121 |
| Msa0299430 | AT2G24070.1 | 32.877 | 219 | 137 | 1 | 266 | 484 | 376 | 584 | 1.07e-28 | 120 |
| Msa0299430 | AT2G24070.3 | 32.877 | 219 | 137 | 1 | 266 | 484 | 376 | 584 | 1.07e-28 | 120 |
| Msa0299430 | AT2G24070.2 | 32.877 | 219 | 137 | 1 | 266 | 484 | 376 | 584 | 1.07e-28 | 120 |
| Msa0299430 | AT4G30710.2 | 32.727 | 220 | 136 | 3 | 266 | 484 | 412 | 620 | 1.75e-28 | 119 |
| Msa0299430 | AT4G30710.4 | 32.701 | 211 | 130 | 3 | 266 | 475 | 412 | 611 | 1.41e-26 | 114 |
| Msa0299430 | AT4G25190.1 | 28.832 | 274 | 165 | 5 | 240 | 490 | 128 | 394 | 2.52e-25 | 108 |
| Msa0299430 | AT4G25190.2 | 28.727 | 275 | 165 | 6 | 240 | 490 | 128 | 395 | 8.35e-24 | 103 |
| Msa0299430 | AT1G49890.1 | 28.794 | 257 | 157 | 5 | 245 | 485 | 400 | 646 | 2.97e-23 | 103 |
| Msa0299430 | AT3G19570.2 | 28.646 | 192 | 137 | 0 | 294 | 485 | 450 | 641 | 7.47e-23 | 102 |
| Msa0299430 | AT5G43160.1 | 28.889 | 180 | 128 | 0 | 307 | 486 | 82 | 261 | 1.54e-20 | 91.7 |
| Msa0299430 | AT5G43160.2 | 28.889 | 180 | 128 | 0 | 307 | 486 | 82 | 261 | 1.54e-20 | 91.7 |
| Msa0299430 | AT3G19570.1 | 30.233 | 172 | 120 | 0 | 294 | 465 | 450 | 621 | 8.17e-20 | 93.2 |
| Msa0299430 | AT3G60000.2 | 28.351 | 194 | 135 | 2 | 293 | 484 | 250 | 441 | 1.55e-18 | 88.6 |
| Msa0299430 | AT3G60000.1 | 29.586 | 169 | 115 | 2 | 293 | 459 | 250 | 416 | 2.46e-16 | 81.6 |
| Msa0299430 | AT3G19570.4 | 31.724 | 145 | 99 | 0 | 294 | 438 | 450 | 594 | 3.05e-15 | 79.0 |
| Msa0299430 | AT3G19570.3 | 31.724 | 145 | 99 | 0 | 294 | 438 | 450 | 594 | 3.05e-15 | 79.0 |
Find 106 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGTTAACATTGACTTAA+TGG | 0.231221 | 2_3:-54366723 | None:intergenic |
| AAACTAATCCTACATGTTAT+AGG | 0.238957 | 2_3:-54367406 | None:intergenic |
| GAAGAGGACTAATTCGATTA+TGG | 0.239383 | 2_3:+54365552 | Msa0299430:CDS |
| AAACTTCTTAATTCTAATAA+TGG | 0.244562 | 2_3:+54365286 | Msa0299430:CDS |
| AATTCACCATCGAATGGTTT+TGG | 0.272527 | 2_3:+54365712 | Msa0299430:CDS |
| TCATCCAAGGAAAACCTTCC+TGG | 0.274888 | 2_3:-54365322 | None:intergenic |
| TGTGTCTCCTATCGTCTTCC+TGG | 0.281185 | 2_3:-54364997 | None:intergenic |
| TTCAACTCCTTTCGCCTTTG+TGG | 0.332527 | 2_3:-54365635 | None:intergenic |
| AACCATTCGATGGTGAATTA+AGG | 0.340592 | 2_3:-54365708 | None:intergenic |
| ACAAGAGCAATTGGTGGTTC+TGG | 0.341427 | 2_3:+54365223 | Msa0299430:CDS |
| TCAACTCCTTTCGCCTTTGT+GGG | 0.346043 | 2_3:-54365634 | None:intergenic |
| CTTAATTCTAATAATGGTTC+AGG | 0.349787 | 2_3:+54365292 | Msa0299430:CDS |
| ACTGCTAGGGATTACTTCAT+AGG | 0.351903 | 2_3:+54367233 | Msa0299430:CDS |
| GTTAAAGTTATTGGAAGCTT+GGG | 0.357089 | 2_3:+54366349 | Msa0299430:intron |
| AGGAAATTCAGTGGATTCTA+TGG | 0.360707 | 2_3:-54364936 | None:intergenic |
| CATAACATTATTTCTGAACT+TGG | 0.360742 | 2_3:-54366168 | None:intergenic |
| TTGTTCTATAATTCTATCTT+CGG | 0.365225 | 2_3:-54365107 | None:intergenic |
| AGCAGAATGCAAACACTCTT+TGG | 0.368717 | 2_3:-54366411 | None:intergenic |
| AATGGTTCAGGCATTGTTCC+AGG | 0.369988 | 2_3:+54365304 | Msa0299430:CDS |
| CGATGAAGCTTTGGCTTCTC+CGG | 0.373848 | 2_3:+54365405 | Msa0299430:CDS |
| CAAGTCATCGATTCGGAGCC+AGG | 0.381540 | 2_3:+54364979 | Msa0299430:CDS |
| AGAGCAATTTGATATGTGTC+TGG | 0.382143 | 2_3:+54366135 | Msa0299430:intron |
| CAAAGCTTCATCGTTGGATT+CGG | 0.396860 | 2_3:-54365395 | None:intergenic |
| TACATCCATTGCTATTCGTC+AGG | 0.402804 | 2_3:+54366682 | Msa0299430:CDS |
| AATGATCAAACAAGAGCAAT+TGG | 0.411484 | 2_3:+54365214 | Msa0299430:CDS |
| CGAATCCAACGATGAAGCTT+TGG | 0.414379 | 2_3:+54365396 | Msa0299430:CDS |
| AAGAGGACTAATTCGATTAT+GGG | 0.415508 | 2_3:+54365553 | Msa0299430:CDS |
| TGCAGCCTGGTTCAATTTGA+AGG | 0.418302 | 2_3:+54367180 | Msa0299430:CDS |
| GCATCACTCATCAACCTTGT+AGG | 0.424035 | 2_3:-54365451 | None:intergenic |
| AGTTAAAGTTATTGGAAGCT+TGG | 0.426135 | 2_3:+54366348 | Msa0299430:intron |
| TGCTGCAATACTATCAGAAT+TGG | 0.434012 | 2_3:+54366953 | Msa0299430:CDS |
| AGATGTTCATAAGCTTCGTT+TGG | 0.444101 | 2_3:+54365744 | Msa0299430:CDS |
| TGTGTGCAGAGTTCCTCTTT+TGG | 0.450064 | 2_3:+54366433 | Msa0299430:CDS |
| TCACAGTGGGCTTTGTCACC+AGG | 0.459279 | 2_3:+54365592 | Msa0299430:CDS |
| GGAGCTTCTGATTCTAACAT+TGG | 0.470930 | 2_3:+54365496 | Msa0299430:CDS |
| CCTCTATGTAGATATAGATC+AGG | 0.471073 | 2_3:+54367256 | Msa0299430:three_prime_UTR |
| GCCTGGTTCAATTTGAAGGT+TGG | 0.480748 | 2_3:+54367184 | Msa0299430:CDS |
| CTTTGTTGACGAGGGTTCAC+CGG | 0.482670 | 2_3:-54364887 | None:intergenic |
| CTGTTCTACGTCGTCAACTC+TGG | 0.489175 | 2_3:+54365038 | Msa0299430:CDS |
| CAACTGCAGGATTTACTGCT+AGG | 0.490974 | 2_3:+54367219 | Msa0299430:CDS |
| TTCTATGGAGGTGGAAGGCG+AGG | 0.496580 | 2_3:-54364921 | None:intergenic |
| TTGATAATCGTTTGATTCAG+TGG | 0.496593 | 2_3:+54365767 | Msa0299430:CDS |
| TTCAGTGGATTCTATGGAGG+TGG | 0.499093 | 2_3:-54364930 | None:intergenic |
| ACCTTAGCACCTTCCAAAAG+AGG | 0.508872 | 2_3:-54366446 | None:intergenic |
| CTTGTAGGAACTTCCACCAC+TGG | 0.509361 | 2_3:-54365436 | None:intergenic |
| GGTGGTTCTGGAAGATTCAC+AGG | 0.510011 | 2_3:+54365235 | Msa0299430:CDS |
| GAGCTTCTGATTCTAACATT+GGG | 0.516533 | 2_3:+54365497 | Msa0299430:CDS |
| GCCAACCTTCAAATTGAACC+AGG | 0.519038 | 2_3:-54367185 | None:intergenic |
| GACTTGCGTATCACGGAGGA+AGG | 0.521074 | 2_3:-54364962 | None:intergenic |
| GAATTAGTCCTCTTCATCAT+CGG | 0.532045 | 2_3:-54365544 | None:intergenic |
| CCTGATCTATATCTACATAG+AGG | 0.533178 | 2_3:-54367256 | None:intergenic |
| TTCAATTTGAAGGTTGGCAA+AGG | 0.533928 | 2_3:+54367190 | Msa0299430:CDS |
| CTTGAAAACTCTGACCTCCC+TGG | 0.540193 | 2_3:-54365610 | None:intergenic |
| GGCCTTAATTCACCATCGAA+TGG | 0.542030 | 2_3:+54365706 | Msa0299430:CDS |
| GAAGTGTTTCGCGCCTTCAT+CGG | 0.542889 | 2_3:-54364863 | None:intergenic |
| CGTTGAAACCGATGATGAAG+AGG | 0.543848 | 2_3:+54365536 | Msa0299430:CDS |
| CTTGCGTATCACGGAGGAAG+GGG | 0.544224 | 2_3:-54364960 | None:intergenic |
| CAACTCCTTTCGCCTTTGTG+GGG | 0.545829 | 2_3:-54365633 | None:intergenic |
| AAATTCAAGCTTAACTAGCT+CGG | 0.547052 | 2_3:+54365366 | Msa0299430:CDS |
| ATTGGAAGCTTGGGGAAGCA+TGG | 0.549278 | 2_3:+54366358 | Msa0299430:CDS |
| TGAACCCTCGTCAACAAAGA+AGG | 0.550286 | 2_3:+54364891 | Msa0299430:CDS |
| GCAAAGGAAATATCAACTGC+AGG | 0.551432 | 2_3:+54367206 | Msa0299430:CDS |
| TCTAACATTGGGAATTTGAA+CGG | 0.552992 | 2_3:+54365508 | Msa0299430:CDS |
| AACTGCAGGATTTACTGCTA+GGG | 0.555292 | 2_3:+54367220 | Msa0299430:CDS |
| TTGTTTCCAAAACCATTCGA+TGG | 0.559989 | 2_3:-54365718 | None:intergenic |
| AGAAGCCAAAGCTTCATCGT+TGG | 0.566476 | 2_3:-54365401 | None:intergenic |
| AATCGATGACTTGCGTATCA+CGG | 0.572186 | 2_3:-54364969 | None:intergenic |
| TCAAGCCCCACAAAGGCGAA+AGG | 0.573131 | 2_3:+54365628 | Msa0299430:CDS |
| TGATACGCAAGTCATCGATT+CGG | 0.576389 | 2_3:+54364972 | Msa0299430:CDS |
| TTCGGAGCCAGGAAGACGAT+AGG | 0.577435 | 2_3:+54364990 | Msa0299430:CDS |
| CGTATCACGGAGGAAGGGGA+AGG | 0.578174 | 2_3:-54364956 | None:intergenic |
| GAGCAATTTGATATGTGTCT+GGG | 0.582338 | 2_3:+54366136 | Msa0299430:intron |
| TCCGGCAAGAAAACCAGTGG+TGG | 0.587118 | 2_3:+54365423 | Msa0299430:CDS |
| GAAACCTTCTTTGTTGACGA+GGG | 0.587157 | 2_3:-54364895 | None:intergenic |
| CACAGTGGGCTTTGTCACCA+GGG | 0.588640 | 2_3:+54365593 | Msa0299430:CDS |
| ACATAACATATCTGTCGTTG+AGG | 0.589439 | 2_3:+54367028 | Msa0299430:CDS |
| AGAATGCAAACACTCTTTGG+TGG | 0.589899 | 2_3:-54366408 | None:intergenic |
| AAGCAGTGTAAAGTGCAGCC+TGG | 0.591075 | 2_3:+54367167 | Msa0299430:CDS |
| CAGTGGTGGAAGTTCCTACA+AGG | 0.591497 | 2_3:+54365437 | Msa0299430:CDS |
| GAAGGCGCGAAACACTTCTC+CGG | 0.599113 | 2_3:+54364868 | Msa0299430:CDS |
| GTTCAGGCATTGTTCCAGGA+AGG | 0.601143 | 2_3:+54365308 | Msa0299430:CDS |
| AGAAACCTTCTTTGTTGACG+AGG | 0.602654 | 2_3:-54364896 | None:intergenic |
| GATCAAACAAGAGCAATTGG+TGG | 0.611838 | 2_3:+54365217 | Msa0299430:CDS |
| ACTTGCGTATCACGGAGGAA+GGG | 0.614284 | 2_3:-54364961 | None:intergenic |
| AGATCAAACCTATAACATGT+AGG | 0.614732 | 2_3:+54367398 | Msa0299430:three_prime_UTR |
| CATGTTATAGGTTTGATCTG+AGG | 0.615978 | 2_3:-54367394 | None:intergenic |
| AGAGGCCTGACGAATAGCAA+TGG | 0.620659 | 2_3:-54366687 | None:intergenic |
| GTGGATTCTATGGAGGTGGA+AGG | 0.624761 | 2_3:-54364926 | None:intergenic |
| TTAAAGTTATTGGAAGCTTG+GGG | 0.630426 | 2_3:+54366350 | Msa0299430:CDS |
| AAGCTTGGGGAAGCATGGAA+AGG | 0.635943 | 2_3:+54366363 | Msa0299430:CDS |
| TGAGTGATGCAACATTGAGA+AGG | 0.641073 | 2_3:+54365464 | Msa0299430:CDS |
| CAAGAGTTCGAAATCACAGT+GGG | 0.647303 | 2_3:+54365579 | Msa0299430:CDS |
| ACATTGAGAAGGGCTAGAAG+AGG | 0.654076 | 2_3:+54365475 | Msa0299430:CDS |
| TTCTCCGGCAAGAAAACCAG+TGG | 0.654553 | 2_3:+54365420 | Msa0299430:CDS |
| TCTATGGAGGTGGAAGGCGA+GGG | 0.655607 | 2_3:-54364920 | None:intergenic |
| AAATTCAGTGGATTCTATGG+AGG | 0.656704 | 2_3:-54364933 | None:intergenic |
| GAGTGATGCAACATTGAGAA+GGG | 0.656920 | 2_3:+54365465 | Msa0299430:CDS |
| AGAGGACTAATTCGATTATG+GGG | 0.664661 | 2_3:+54365554 | Msa0299430:CDS |
| AATGGAAGCTGTGAGATCAG+AGG | 0.667538 | 2_3:-54366705 | None:intergenic |
| GGAAGGGGAAGGAAATTCAG+TGG | 0.670014 | 2_3:-54364945 | None:intergenic |
| AATTTGATATGTGTCTGGGA+TGG | 0.675214 | 2_3:+54366140 | Msa0299430:CDS |
| CGATGACTTGCGTATCACGG+AGG | 0.697439 | 2_3:-54364966 | None:intergenic |
| CAAACAAGTGTACCTCGGTG+TGG | 0.734371 | 2_3:-54365837 | None:intergenic |
| AGTGGGCTTTGTCACCAGGG+AGG | 0.741250 | 2_3:+54365596 | Msa0299430:CDS |
| ACAAGAGTTCGAAATCACAG+TGG | 0.753232 | 2_3:+54365578 | Msa0299430:CDS |
| AAACATTTCTCGCCACACCG+AGG | 0.776407 | 2_3:+54365825 | Msa0299430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTTCTTAATTCTAATAA+TGG | + | chr2_3:54365286-54365305 | Msa0299430:CDS | 15.0% |
| !! | AAATTGAATTAACATTATCT+TGG | + | chr2_3:54366097-54366116 | Msa0299430:intron | 15.0% |
| !! | ATTGATTACAAAAACAAATT+TGG | - | chr2_3:54366293-54366312 | None:intergenic | 15.0% |
| !! | TTGTTCTATAATTCTATCTT+CGG | - | chr2_3:54365110-54365129 | None:intergenic | 20.0% |
| !!! | AACTGATTTATTGTTGTTTT+TGG | + | chr2_3:54366324-54366343 | Msa0299430:intron | 20.0% |
| !!! | AAGTGATATTTTTCGATTTA+AGG | + | chr2_3:54366495-54366514 | Msa0299430:intron | 20.0% |
| !!! | AGTGATATTTTTCGATTTAA+GGG | + | chr2_3:54366496-54366515 | Msa0299430:intron | 20.0% |
| !!! | TTTTCTTATGCTTAACTTAT+AGG | + | chr2_3:54366646-54366665 | Msa0299430:intron | 20.0% |
| !!! | GATTTTATCACTATATATGT+TGG | + | chr2_3:54367133-54367152 | Msa0299430:intron | 20.0% |
| ! | CTTAATTCTAATAATGGTTC+AGG | + | chr2_3:54365292-54365311 | Msa0299430:CDS | 25.0% |
| !! | GTTGAAAAACTACTCAATTT+TGG | + | chr2_3:54365652-54365671 | Msa0299430:CDS | 25.0% |
| ! | TTCAAGAGTAAAAAATCTGT+TGG | + | chr2_3:54365685-54365704 | Msa0299430:CDS | 25.0% |
| ! | TGAAAACAACTTACAACTTA+CGG | - | chr2_3:54365901-54365920 | None:intergenic | 25.0% |
| ! | TGTTGAAATAAACTGAAACT+AGG | + | chr2_3:54365939-54365958 | Msa0299430:intron | 25.0% |
| ! | AGTTTATGCTATAAGATAGT+TGG | + | chr2_3:54366011-54366030 | Msa0299430:intron | 25.0% |
| !!! | CATAACATTATTTCTGAACT+TGG | - | chr2_3:54366171-54366190 | None:intergenic | 25.0% |
| ! | AATTAGGTTTACTACTTACT+TGG | - | chr2_3:54366256-54366275 | None:intergenic | 25.0% |
| ! | GGCAGATATTAATCAAAATT+AGG | - | chr2_3:54366272-54366291 | None:intergenic | 25.0% |
| !!! | TTTTTGGCAGTTAAAGTTAT+TGG | + | chr2_3:54366340-54366359 | Msa0299430:intron | 25.0% |
| !!! | TTTAATAGTTTTGTAACCGT+CGG | - | chr2_3:54366532-54366551 | None:intergenic | 25.0% |
| !!! | AGAAGTTAACATTGACTTAA+TGG | - | chr2_3:54366726-54366745 | None:intergenic | 25.0% |
| ! | CAGAAAACAAAAGATACATT+TGG | - | chr2_3:54366884-54366903 | None:intergenic | 25.0% |
| !!! | AATGTATCTTTTGTTTTCTG+AGG | + | chr2_3:54366884-54366903 | Msa0299430:intron | 25.0% |
| !!! | ATGTATCTTTTGTTTTCTGA+GGG | + | chr2_3:54366885-54366904 | Msa0299430:intron | 25.0% |
| ! | AAACTAATCCTACATGTTAT+AGG | - | chr2_3:54367409-54367428 | None:intergenic | 25.0% |
| AATGATCAAACAAGAGCAAT+TGG | + | chr2_3:54365214-54365233 | Msa0299430:CDS | 30.0% | |
| ! | TAGTTTAGCATTTTCATCCA+AGG | - | chr2_3:54365338-54365357 | None:intergenic | 30.0% |
| AAATTCAAGCTTAACTAGCT+CGG | + | chr2_3:54365366-54365385 | Msa0299430:CDS | 30.0% | |
| TCTAACATTGGGAATTTGAA+CGG | + | chr2_3:54365508-54365527 | Msa0299430:CDS | 30.0% | |
| AAGAGGACTAATTCGATTAT+GGG | + | chr2_3:54365553-54365572 | Msa0299430:CDS | 30.0% | |
| ! | TTGATAATCGTTTGATTCAG+TGG | + | chr2_3:54365767-54365786 | Msa0299430:CDS | 30.0% |
| !! | AGTTGTTTTCATAAGTTGTC+CGG | + | chr2_3:54365910-54365929 | Msa0299430:intron | 30.0% |
| GTTTATTTCAACAAGTGTTC+CGG | - | chr2_3:54365932-54365951 | None:intergenic | 30.0% | |
| AGTTAAAGTTATTGGAAGCT+TGG | + | chr2_3:54366348-54366367 | Msa0299430:intron | 30.0% | |
| GTTAAAGTTATTGGAAGCTT+GGG | + | chr2_3:54366349-54366368 | Msa0299430:intron | 30.0% | |
| TTAAAGTTATTGGAAGCTTG+GGG | + | chr2_3:54366350-54366369 | Msa0299430:CDS | 30.0% | |
| AGTCTAAGTGATCATATGAT+AGG | + | chr2_3:54366604-54366623 | Msa0299430:intron | 30.0% | |
| GTCTAAGTGATCATATGATA+GGG | + | chr2_3:54366605-54366624 | Msa0299430:intron | 30.0% | |
| ! | CAAGTTTTCTACTGTATACA+TGG | + | chr2_3:54367370-54367389 | Msa0299430:three_prime_UTR | 30.0% |
| AGATCAAACCTATAACATGT+AGG | + | chr2_3:54367398-54367417 | Msa0299430:three_prime_UTR | 30.0% | |
| ! | AAATTCAGTGGATTCTATGG+AGG | - | chr2_3:54364936-54364955 | None:intergenic | 35.0% |
| ! | AGGAAATTCAGTGGATTCTA+TGG | - | chr2_3:54364939-54364958 | None:intergenic | 35.0% |
| !! | GACTTATTTTTCGCAGAAGA+AGG | - | chr2_3:54365064-54365083 | None:intergenic | 35.0% |
| TCTTCTGCGAAAAATAAGTC+TGG | + | chr2_3:54365064-54365083 | Msa0299430:CDS | 35.0% | |
| GAGCTTCTGATTCTAACATT+GGG | + | chr2_3:54365497-54365516 | Msa0299430:CDS | 35.0% | |
| GAATTAGTCCTCTTCATCAT+CGG | - | chr2_3:54365547-54365566 | None:intergenic | 35.0% | |
| GAAGAGGACTAATTCGATTA+TGG | + | chr2_3:54365552-54365571 | Msa0299430:CDS | 35.0% | |
| AGAGGACTAATTCGATTATG+GGG | + | chr2_3:54365554-54365573 | Msa0299430:CDS | 35.0% | |
| AACCATTCGATGGTGAATTA+AGG | - | chr2_3:54365711-54365730 | None:intergenic | 35.0% | |
| ! | AATTCACCATCGAATGGTTT+TGG | + | chr2_3:54365712-54365731 | Msa0299430:CDS | 35.0% |
| TTGTTTCCAAAACCATTCGA+TGG | - | chr2_3:54365721-54365740 | None:intergenic | 35.0% | |
| AGATGTTCATAAGCTTCGTT+TGG | + | chr2_3:54365744-54365763 | Msa0299430:CDS | 35.0% | |
| TTAGACAAACAAGTGTACCT+CGG | - | chr2_3:54365845-54365864 | None:intergenic | 35.0% | |
| AGAGCAATTTGATATGTGTC+TGG | + | chr2_3:54366135-54366154 | Msa0299430:intron | 35.0% | |
| GAGCAATTTGATATGTGTCT+GGG | + | chr2_3:54366136-54366155 | Msa0299430:intron | 35.0% | |
| AATTTGATATGTGTCTGGGA+TGG | + | chr2_3:54366140-54366159 | Msa0299430:CDS | 35.0% | |
| TAAGGGATTAAATTGACCGA+CGG | + | chr2_3:54366513-54366532 | Msa0299430:intron | 35.0% | |
| AAGTGATCATATGATAGGGA+TGG | + | chr2_3:54366609-54366628 | Msa0299430:intron | 35.0% | |
| !! | ACAACTTTGAAACTTACTGC+AGG | - | chr2_3:54366755-54366774 | None:intergenic | 35.0% |
| GCTAAACATCGTGGTTAATT+AGG | + | chr2_3:54366782-54366801 | Msa0299430:intron | 35.0% | |
| ! | GGAAAATTTTCTCTGTCAAC+AGG | + | chr2_3:54366920-54366939 | Msa0299430:intron | 35.0% |
| TGCTGCAATACTATCAGAAT+TGG | + | chr2_3:54366953-54366972 | Msa0299430:CDS | 35.0% | |
| ACATAACATATCTGTCGTTG+AGG | + | chr2_3:54367028-54367047 | Msa0299430:CDS | 35.0% | |
| TTCAATTTGAAGGTTGGCAA+AGG | + | chr2_3:54367190-54367209 | Msa0299430:CDS | 35.0% | |
| CCTGATCTATATCTACATAG+AGG | - | chr2_3:54367259-54367278 | None:intergenic | 35.0% | |
| CCTCTATGTAGATATAGATC+AGG | + | chr2_3:54367256-54367275 | Msa0299430:three_prime_UTR | 35.0% | |
| CATGTTATAGGTTTGATCTG+AGG | - | chr2_3:54367397-54367416 | None:intergenic | 35.0% | |
| GAAACCTTCTTTGTTGACGA+GGG | - | chr2_3:54364898-54364917 | None:intergenic | 40.0% | |
| AGAAACCTTCTTTGTTGACG+AGG | - | chr2_3:54364899-54364918 | None:intergenic | 40.0% | |
| ! | AATCGATGACTTGCGTATCA+CGG | - | chr2_3:54364972-54364991 | None:intergenic | 40.0% |
| ! | TGATACGCAAGTCATCGATT+CGG | + | chr2_3:54364972-54364991 | Msa0299430:CDS | 40.0% |
| GATCAAACAAGAGCAATTGG+TGG | + | chr2_3:54365217-54365236 | Msa0299430:CDS | 40.0% | |
| CAAAGCTTCATCGTTGGATT+CGG | - | chr2_3:54365398-54365417 | None:intergenic | 40.0% | |
| TGAGTGATGCAACATTGAGA+AGG | + | chr2_3:54365464-54365483 | Msa0299430:CDS | 40.0% | |
| GAGTGATGCAACATTGAGAA+GGG | + | chr2_3:54365465-54365484 | Msa0299430:CDS | 40.0% | |
| GGAGCTTCTGATTCTAACAT+TGG | + | chr2_3:54365496-54365515 | Msa0299430:CDS | 40.0% | |
| ACAAGAGTTCGAAATCACAG+TGG | + | chr2_3:54365578-54365597 | Msa0299430:CDS | 40.0% | |
| CAAGAGTTCGAAATCACAGT+GGG | + | chr2_3:54365579-54365598 | Msa0299430:CDS | 40.0% | |
| AGAATGCAAACACTCTTTGG+TGG | - | chr2_3:54366411-54366430 | None:intergenic | 40.0% | |
| AGCAGAATGCAAACACTCTT+TGG | - | chr2_3:54366414-54366433 | None:intergenic | 40.0% | |
| ! | TACATCCATTGCTATTCGTC+AGG | + | chr2_3:54366682-54366701 | Msa0299430:CDS | 40.0% |
| GTTAATGACGCTAAACATCG+TGG | + | chr2_3:54366773-54366792 | Msa0299430:intron | 40.0% | |
| GCAAAGGAAATATCAACTGC+AGG | + | chr2_3:54367206-54367225 | Msa0299430:CDS | 40.0% | |
| AACTGCAGGATTTACTGCTA+GGG | + | chr2_3:54367220-54367239 | Msa0299430:CDS | 40.0% | |
| ACTGCTAGGGATTACTTCAT+AGG | + | chr2_3:54367233-54367252 | Msa0299430:CDS | 40.0% | |
| TGAACCCTCGTCAACAAAGA+AGG | + | chr2_3:54364891-54364910 | Msa0299430:CDS | 45.0% | |
| ! | TTCAGTGGATTCTATGGAGG+TGG | - | chr2_3:54364933-54364952 | None:intergenic | 45.0% |
| ! | ACAAGAGCAATTGGTGGTTC+TGG | + | chr2_3:54365223-54365242 | Msa0299430:CDS | 45.0% |
| ! | AATGGTTCAGGCATTGTTCC+AGG | + | chr2_3:54365304-54365323 | Msa0299430:CDS | 45.0% |
| ! | TGTTCCAGGAAGGTTTTCCT+TGG | + | chr2_3:54365318-54365337 | Msa0299430:CDS | 45.0% |
| TCATCCAAGGAAAACCTTCC+TGG | - | chr2_3:54365325-54365344 | None:intergenic | 45.0% | |
| CGAATCCAACGATGAAGCTT+TGG | + | chr2_3:54365396-54365415 | Msa0299430:CDS | 45.0% | |
| AGAAGCCAAAGCTTCATCGT+TGG | - | chr2_3:54365404-54365423 | None:intergenic | 45.0% | |
| GCATCACTCATCAACCTTGT+AGG | - | chr2_3:54365454-54365473 | None:intergenic | 45.0% | |
| ACATTGAGAAGGGCTAGAAG+AGG | + | chr2_3:54365475-54365494 | Msa0299430:CDS | 45.0% | |
| CGTTGAAACCGATGATGAAG+AGG | + | chr2_3:54365536-54365555 | Msa0299430:CDS | 45.0% | |
| !! | AGAGTTTTCAAGCCCCACAA+AGG | + | chr2_3:54365621-54365640 | Msa0299430:CDS | 45.0% |
| TCAACTCCTTTCGCCTTTGT+GGG | - | chr2_3:54365637-54365656 | None:intergenic | 45.0% | |
| TTCAACTCCTTTCGCCTTTG+TGG | - | chr2_3:54365638-54365657 | None:intergenic | 45.0% | |
| GGCCTTAATTCACCATCGAA+TGG | + | chr2_3:54365706-54365725 | Msa0299430:CDS | 45.0% | |
| ! | TGTGTGCAGAGTTCCTCTTT+TGG | + | chr2_3:54366433-54366452 | Msa0299430:CDS | 45.0% |
| ! | TGCAGAGTTCCTCTTTTGGA+AGG | + | chr2_3:54366437-54366456 | Msa0299430:CDS | 45.0% |
| !!! | TCCTCTTTTGGAAGGTGCTA+AGG | + | chr2_3:54366445-54366464 | Msa0299430:CDS | 45.0% |
| ACCTTAGCACCTTCCAAAAG+AGG | - | chr2_3:54366449-54366468 | None:intergenic | 45.0% | |
| AATGGAAGCTGTGAGATCAG+AGG | - | chr2_3:54366708-54366727 | None:intergenic | 45.0% | |
| ! | TTCTGAGGGCTGCATTCATA+TGG | + | chr2_3:54366899-54366918 | Msa0299430:intron | 45.0% |
| TGCAGCCTGGTTCAATTTGA+AGG | + | chr2_3:54367180-54367199 | Msa0299430:CDS | 45.0% | |
| GCCTGGTTCAATTTGAAGGT+TGG | + | chr2_3:54367184-54367203 | Msa0299430:CDS | 45.0% | |
| GCCAACCTTCAAATTGAACC+AGG | - | chr2_3:54367188-54367207 | None:intergenic | 45.0% | |
| CAACTGCAGGATTTACTGCT+AGG | + | chr2_3:54367219-54367238 | Msa0299430:CDS | 45.0% | |
| CTTTGTTGACGAGGGTTCAC+CGG | - | chr2_3:54364890-54364909 | None:intergenic | 50.0% | |
| GTGGATTCTATGGAGGTGGA+AGG | - | chr2_3:54364929-54364948 | None:intergenic | 50.0% | |
| GGAAGGGGAAGGAAATTCAG+TGG | - | chr2_3:54364948-54364967 | None:intergenic | 50.0% | |
| ACTTGCGTATCACGGAGGAA+GGG | - | chr2_3:54364964-54364983 | None:intergenic | 50.0% | |
| TGTGTCTCCTATCGTCTTCC+TGG | - | chr2_3:54365000-54365019 | None:intergenic | 50.0% | |
| CTGTTCTACGTCGTCAACTC+TGG | + | chr2_3:54365038-54365057 | Msa0299430:CDS | 50.0% | |
| !! | GGTGGTTCTGGAAGATTCAC+AGG | + | chr2_3:54365235-54365254 | Msa0299430:CDS | 50.0% |
| ! | GTTCAGGCATTGTTCCAGGA+AGG | + | chr2_3:54365308-54365327 | Msa0299430:CDS | 50.0% |
| ! | CGATGAAGCTTTGGCTTCTC+CGG | + | chr2_3:54365405-54365424 | Msa0299430:CDS | 50.0% |
| TTCTCCGGCAAGAAAACCAG+TGG | + | chr2_3:54365420-54365439 | Msa0299430:CDS | 50.0% | |
| !!! | TCCACCACTGGTTTTCTTGC+CGG | - | chr2_3:54365427-54365446 | None:intergenic | 50.0% |
| CTTGTAGGAACTTCCACCAC+TGG | - | chr2_3:54365439-54365458 | None:intergenic | 50.0% | |
| ! | CAGTGGTGGAAGTTCCTACA+AGG | + | chr2_3:54365437-54365456 | Msa0299430:CDS | 50.0% |
| CTTGAAAACTCTGACCTCCC+TGG | - | chr2_3:54365613-54365632 | None:intergenic | 50.0% | |
| CAACTCCTTTCGCCTTTGTG+GGG | - | chr2_3:54365636-54365655 | None:intergenic | 50.0% | |
| AAACATTTCTCGCCACACCG+AGG | + | chr2_3:54365825-54365844 | Msa0299430:CDS | 50.0% | |
| CAAACAAGTGTACCTCGGTG+TGG | - | chr2_3:54365840-54365859 | None:intergenic | 50.0% | |
| ATTGGAAGCTTGGGGAAGCA+TGG | + | chr2_3:54366358-54366377 | Msa0299430:CDS | 50.0% | |
| ! | AAGCTTGGGGAAGCATGGAA+AGG | + | chr2_3:54366363-54366382 | Msa0299430:CDS | 50.0% |
| ! | GATAGGGATGGTGCATTGAC+AGG | + | chr2_3:54366621-54366640 | Msa0299430:intron | 50.0% |
| AGAGGCCTGACGAATAGCAA+TGG | - | chr2_3:54366690-54366709 | None:intergenic | 50.0% | |
| AAGCAGTGTAAAGTGCAGCC+TGG | + | chr2_3:54367167-54367186 | Msa0299430:CDS | 50.0% | |
| ! | GAAGGCGCGAAACACTTCTC+CGG | + | chr2_3:54364868-54364887 | Msa0299430:CDS | 55.0% |
| TCTATGGAGGTGGAAGGCGA+GGG | - | chr2_3:54364923-54364942 | None:intergenic | 55.0% | |
| TTCTATGGAGGTGGAAGGCG+AGG | - | chr2_3:54364924-54364943 | None:intergenic | 55.0% | |
| CTTGCGTATCACGGAGGAAG+GGG | - | chr2_3:54364963-54364982 | None:intergenic | 55.0% | |
| GACTTGCGTATCACGGAGGA+AGG | - | chr2_3:54364965-54364984 | None:intergenic | 55.0% | |
| ! | CGATGACTTGCGTATCACGG+AGG | - | chr2_3:54364969-54364988 | None:intergenic | 55.0% |
| !! | CAAGTCATCGATTCGGAGCC+AGG | + | chr2_3:54364979-54364998 | Msa0299430:CDS | 55.0% |
| TTCGGAGCCAGGAAGACGAT+AGG | + | chr2_3:54364990-54365009 | Msa0299430:CDS | 55.0% | |
| TCCGGCAAGAAAACCAGTGG+TGG | + | chr2_3:54365423-54365442 | Msa0299430:CDS | 55.0% | |
| ! | TCACAGTGGGCTTTGTCACC+AGG | + | chr2_3:54365592-54365611 | Msa0299430:CDS | 55.0% |
| ! | CACAGTGGGCTTTGTCACCA+GGG | + | chr2_3:54365593-54365612 | Msa0299430:CDS | 55.0% |
| TCAAGCCCCACAAAGGCGAA+AGG | + | chr2_3:54365628-54365647 | Msa0299430:CDS | 55.0% | |
| CGTATCACGGAGGAAGGGGA+AGG | - | chr2_3:54364959-54364978 | None:intergenic | 60.0% | |
| ! | AGTGGGCTTTGTCACCAGGG+AGG | + | chr2_3:54365596-54365615 | Msa0299430:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 54364866 | 54367439 | 54364866 | ID=Msa0299430;Name=Msa0299430 |
| chr2_3 | mRNA | 54364866 | 54367439 | 54364866 | ID=Msa0299430-mRNA-1;Parent=Msa0299430;Name=Msa0299430-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.6|0.5|1|1|1|6|185|503 |
| chr2_3 | exon | 54364866 | 54365846 | 54364866 | ID=Msa0299430-mRNA-1:exon:17306;Parent=Msa0299430-mRNA-1 |
| chr2_3 | exon | 54366137 | 54366256 | 54366137 | ID=Msa0299430-mRNA-1:exon:17307;Parent=Msa0299430-mRNA-1 |
| chr2_3 | exon | 54366350 | 54366466 | 54366350 | ID=Msa0299430-mRNA-1:exon:17308;Parent=Msa0299430-mRNA-1 |
| chr2_3 | exon | 54366668 | 54366757 | 54366668 | ID=Msa0299430-mRNA-1:exon:17309;Parent=Msa0299430-mRNA-1 |
| chr2_3 | exon | 54366942 | 54367049 | 54366942 | ID=Msa0299430-mRNA-1:exon:17310;Parent=Msa0299430-mRNA-1 |
| chr2_3 | exon | 54367159 | 54367439 | 54367159 | ID=Msa0299430-mRNA-1:exon:17311;Parent=Msa0299430-mRNA-1 |
| chr2_3 | CDS | 54364866 | 54365846 | 54364866 | ID=Msa0299430-mRNA-1:cds;Parent=Msa0299430-mRNA-1 |
| chr2_3 | CDS | 54366137 | 54366256 | 54366137 | ID=Msa0299430-mRNA-1:cds;Parent=Msa0299430-mRNA-1 |
| chr2_3 | CDS | 54366350 | 54366466 | 54366350 | ID=Msa0299430-mRNA-1:cds;Parent=Msa0299430-mRNA-1 |
| chr2_3 | CDS | 54366668 | 54366757 | 54366668 | ID=Msa0299430-mRNA-1:cds;Parent=Msa0299430-mRNA-1 |
| chr2_3 | CDS | 54366942 | 54367049 | 54366942 | ID=Msa0299430-mRNA-1:cds;Parent=Msa0299430-mRNA-1 |
| chr2_3 | CDS | 54367159 | 54367254 | 54367159 | ID=Msa0299430-mRNA-1:cds;Parent=Msa0299430-mRNA-1 |
| chr2_3 | three_prime_UTR | 54367255 | 54367439 | 54367255 | ID=Msa0299430-mRNA-1:three_prime_utr;Parent=Msa0299430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
