Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717260 | XP_003612131.2 | 97.101 | 207 | 6 | 0 | 1 | 207 | 1 | 207 | 5.51e-149 | 422 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717260 | sp|Q9XI31|GLYI4_ARATH | 58.993 | 139 | 53 | 1 | 25 | 163 | 9 | 143 | 1.49e-57 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717260 | G7KGE7 | 97.101 | 207 | 6 | 0 | 1 | 207 | 1 | 207 | 2.63e-149 | 422 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0717260 | 0.804434 | 2.164559e-49 | -8.615850e-47 |
| Msa0012440 | Msa0717260 | 0.801926 | 7.151198e-49 | -8.615850e-47 |
| Msa0017510 | Msa0717260 | 0.817213 | 3.704993e-52 | -8.615850e-47 |
| Msa0022640 | Msa0717260 | 0.813974 | 1.950626e-51 | -8.615850e-47 |
| Msa0032500 | Msa0717260 | 0.801066 | 1.073088e-48 | -8.615850e-47 |
| Msa0036430 | Msa0717260 | 0.820486 | 6.686885e-53 | -8.615850e-47 |
| Msa0036960 | Msa0717260 | 0.815670 | 8.207416e-52 | -8.615850e-47 |
| Msa0044020 | Msa0717260 | 0.804235 | 2.380691e-49 | -8.615850e-47 |
| Msa0044100 | Msa0717260 | 0.846744 | 1.791569e-59 | -8.615850e-47 |
| Msa0053110 | Msa0717260 | 0.803136 | 4.025659e-49 | -8.615850e-47 |
| Msa0072370 | Msa0717260 | 0.807237 | 5.574729e-50 | -8.615850e-47 |
| Msa0078430 | Msa0717260 | 0.817272 | 3.593327e-52 | -8.615850e-47 |
| Msa0084500 | Msa0717260 | 0.800606 | 1.331941e-48 | -8.615850e-47 |
| Msa0095540 | Msa0717260 | 0.838692 | 2.473277e-57 | -8.615850e-47 |
| Msa0096000 | Msa0717260 | 0.832391 | 9.711260e-56 | -8.615850e-47 |
| Msa0098440 | Msa0717260 | 0.829443 | 5.133088e-55 | -8.615850e-47 |
| Msa0105420 | Msa0717260 | 0.809787 | 1.592182e-50 | -8.615850e-47 |
| Msa0611380 | Msa0717260 | 0.905706 | 3.232005e-80 | -8.615850e-47 |
| Msa0618180 | Msa0717260 | 0.860797 | 1.607402e-63 | -8.615850e-47 |
| Msa0618220 | Msa0717260 | 0.859155 | 5.027866e-63 | -8.615850e-47 |
| Msa0618290 | Msa0717260 | 0.828016 | 1.136399e-54 | -8.615850e-47 |
| Msa0619990 | Msa0717260 | 0.851584 | 8.067623e-61 | -8.615850e-47 |
| Msa0621890 | Msa0717260 | 0.824171 | 9.324179e-54 | -8.615850e-47 |
| Msa0628640 | Msa0717260 | 0.905959 | 2.471467e-80 | -8.615850e-47 |
| Msa0631120 | Msa0717260 | 0.918917 | 8.616231e-87 | -8.615850e-47 |
| Msa0666030 | Msa0717260 | 0.890272 | 1.144729e-73 | -8.615850e-47 |
| Msa0669340 | Msa0717260 | 0.898276 | 6.214955e-77 | -8.615850e-47 |
| Msa0684500 | Msa0717260 | 0.835869 | 1.305214e-56 | -8.615850e-47 |
| Msa0701970 | Msa0717260 | 0.871748 | 5.393807e-67 | -8.615850e-47 |
| Msa0706420 | Msa0717260 | 0.842910 | 1.937933e-58 | -8.615850e-47 |
| Msa0709500 | Msa0717260 | 0.802208 | 6.256174e-49 | -8.615850e-47 |
| Msa0716450 | Msa0717260 | 0.917077 | 8.229372e-86 | -8.615850e-47 |
| Msa0717260 | Msa0734230 | 0.861764 | 8.158173e-64 | -8.615850e-47 |
| Msa0717260 | Msa0741900 | 0.815512 | 8.901225e-52 | -8.615850e-47 |
| Msa0717260 | Msa0747780 | 0.800638 | 1.312345e-48 | -8.615850e-47 |
| Msa0717260 | Msa0754370 | 0.814019 | 1.906417e-51 | -8.615850e-47 |
| Msa0717260 | Msa0758320 | 0.963613 | 2.667765e-122 | -8.615850e-47 |
| Msa0717260 | Msa0766100 | -0.801787 | 7.636018e-49 | -8.615850e-47 |
| Msa0717260 | Msa0773610 | 0.801925 | 7.153547e-49 | -8.615850e-47 |
| Msa0717260 | Msa0775440 | 0.887326 | 1.573885e-72 | -8.615850e-47 |
| Msa0717260 | Msa0776220 | 0.800231 | 1.587789e-48 | -8.615850e-47 |
| Msa0717260 | Msa0790850 | 0.804891 | 1.737365e-49 | -8.615850e-47 |
| Msa0717260 | Msa0795690 | 0.820311 | 7.336516e-53 | -8.615850e-47 |
| Msa0717260 | Msa0799030 | 0.905671 | 3.353571e-80 | -8.615850e-47 |
| Msa0717260 | Msa0799700 | 0.878817 | 2.065255e-69 | -8.615850e-47 |
| Msa0717260 | Msa0810020 | 0.836475 | 9.156203e-57 | -8.615850e-47 |
| Msa0717260 | Msa0812820 | 0.880789 | 4.108951e-70 | -8.615850e-47 |
| Msa0717260 | Msa0822990 | 0.833645 | 4.734252e-56 | -8.615850e-47 |
| Msa0717260 | Msa0837440 | 0.909392 | 5.992552e-82 | -8.615850e-47 |
| Msa0717260 | Msa0837980 | 0.956555 | 2.240018e-114 | -8.615850e-47 |
| Msa0717260 | Msa0853320 | 0.906297 | 1.723932e-80 | -8.615850e-47 |
| Msa0717260 | Msa0855310 | 0.816437 | 5.531607e-52 | -8.615850e-47 |
| Msa0717260 | Msa0858840 | 0.806832 | 6.793439e-50 | -8.615850e-47 |
| Msa0717260 | Msa0862100 | 0.822572 | 2.204851e-53 | -8.615850e-47 |
| Msa0717260 | Msa0870620 | 0.804855 | 1.767989e-49 | -8.615850e-47 |
| Msa0717260 | Msa0870690 | 0.801792 | 7.618930e-49 | -8.615850e-47 |
| Msa0717260 | Msa0872310 | 0.807446 | 5.035278e-50 | -8.615850e-47 |
| Msa0717260 | Msa0880140 | 0.822640 | 2.125712e-53 | -8.615850e-47 |
| Msa0717260 | Msa0880710 | 0.834599 | 2.730920e-56 | -8.615850e-47 |
| Msa0717260 | Msa0885060 | 0.818152 | 2.275063e-52 | -8.615850e-47 |
| Msa0717260 | Msa0905550 | 0.807464 | 4.991697e-50 | -8.615850e-47 |
| Msa0717260 | Msa0936270 | 0.819337 | 1.224580e-52 | -8.615850e-47 |
| Msa0717260 | Msa0937550 | 0.801648 | 8.156139e-49 | -8.615850e-47 |
| Msa0717260 | Msa0944770 | 0.821446 | 4.019350e-53 | -8.615850e-47 |
| Msa0717260 | Msa0951710 | 0.802328 | 5.910283e-49 | -8.615850e-47 |
| Msa0717260 | Msa0966420 | 0.805905 | 1.065072e-49 | -8.615850e-47 |
| Msa0717260 | Msa0979510 | 0.807361 | 5.247578e-50 | -8.615850e-47 |
| Msa0717260 | Msa0981010 | 0.826051 | 3.353822e-54 | -8.615850e-47 |
| Msa0717260 | Msa0988480 | 0.801177 | 1.018378e-48 | -8.615850e-47 |
| Msa0717260 | Msa1001770 | 0.801600 | 8.339930e-49 | -8.615850e-47 |
| Msa0717260 | Msa1002620 | 0.911769 | 4.179500e-83 | -8.615850e-47 |
| Msa0717260 | Msa1007610 | -0.808264 | 3.373003e-50 | -8.615850e-47 |
| Msa0717260 | Msa1010110 | 0.831508 | 1.603934e-55 | -8.615850e-47 |
| Msa0717260 | Msa1020720 | 0.820938 | 5.265261e-53 | -8.615850e-47 |
| Msa0717260 | Msa1033560 | 0.859212 | 4.836771e-63 | -8.615850e-47 |
| Msa0717260 | Msa1055280 | 0.805622 | 1.221604e-49 | -8.615850e-47 |
| Msa0717260 | Msa1073340 | 0.832558 | 8.825768e-56 | -8.615850e-47 |
| Msa0717260 | Msa1073350 | 0.830673 | 2.571766e-55 | -8.615850e-47 |
| Msa0717260 | Msa1083150 | 0.807023 | 6.190080e-50 | -8.615850e-47 |
| Msa0717260 | Msa1098560 | 0.803548 | 3.307016e-49 | -8.615850e-47 |
| Msa0717260 | Msa1113850 | 0.863100 | 3.167970e-64 | -8.615850e-47 |
| Msa0717260 | Msa1125760 | 0.816171 | 6.344998e-52 | -8.615850e-47 |
| Msa0717260 | Msa1139410 | 0.814533 | 1.467556e-51 | -8.615850e-47 |
| Msa0717260 | Msa1139810 | 0.800731 | 1.255756e-48 | -8.615850e-47 |
| Msa0717260 | Msa1160400 | 0.866609 | 2.516583e-65 | -8.615850e-47 |
| Msa0717260 | Msa1171360 | 0.802899 | 4.506323e-49 | -8.615850e-47 |
| Msa0717260 | Msa1172450 | 0.808267 | 3.368455e-50 | -8.615850e-47 |
| Msa0717260 | Msa1172590 | 0.805118 | 1.557684e-49 | -8.615850e-47 |
| Msa0717260 | Msa1172670 | 0.806180 | 9.322989e-50 | -8.615850e-47 |
| Msa0717260 | Msa1173860 | 0.801548 | 8.549056e-49 | -8.615850e-47 |
| Msa0717260 | Msa1179460 | 0.822182 | 2.716783e-53 | -8.615850e-47 |
| Msa0717260 | Msa1190120 | 0.862107 | 6.405945e-64 | -8.615850e-47 |
| Msa0717260 | Msa1197590 | 0.836928 | 7.019509e-57 | -8.615850e-47 |
| Msa0717260 | Msa1201890 | 0.828094 | 1.088441e-54 | -8.615850e-47 |
| Msa0717260 | Msa1203000 | 0.896085 | 5.171642e-76 | -8.615850e-47 |
| Msa0717260 | Msa1211550 | 0.878805 | 2.085600e-69 | -8.615850e-47 |
| Msa0717260 | Msa1217860 | 0.803071 | 4.152985e-49 | -8.615850e-47 |
| Msa0717260 | Msa1217940 | 0.856879 | 2.387359e-62 | -8.615850e-47 |
| Msa0717260 | Msa1218480 | 0.839385 | 1.635504e-57 | -8.615850e-47 |
| Msa0717260 | Msa1219260 | 0.901651 | 2.159548e-78 | -8.615850e-47 |
| Msa0717260 | Msa1220230 | 0.811812 | 5.805194e-51 | -8.615850e-47 |
| Msa0717260 | Msa1227950 | 0.861939 | 7.212228e-64 | -8.615850e-47 |
| Msa0717260 | Msa1227970 | 0.861224 | 1.192566e-63 | -8.615850e-47 |
| Msa0717260 | Msa1254700 | 0.849028 | 4.206000e-60 | -8.615850e-47 |
| Msa0717260 | Msa1255040 | -0.801523 | 8.651974e-49 | -8.615850e-47 |
| Msa0717260 | Msa1255280 | 0.875589 | 2.735778e-68 | -8.615850e-47 |
| Msa0717260 | Msa1258050 | 0.868820 | 4.913792e-66 | -8.615850e-47 |
| Msa0717260 | Msa1264020 | 0.802080 | 6.646076e-49 | -8.615850e-47 |
| Msa0717260 | Msa1265960 | 0.807556 | 4.772472e-50 | -8.615850e-47 |
| Msa0717260 | Msa1266960 | 0.897198 | 1.773094e-76 | -8.615850e-47 |
| Msa0717260 | Msa1281720 | 0.800248 | 1.575426e-48 | -8.615850e-47 |
| Msa0717260 | Msa1291870 | 0.829563 | 4.801094e-55 | -8.615850e-47 |
| Msa0717260 | Msa1308130 | 0.830917 | 2.241197e-55 | -8.615850e-47 |
| Msa0717260 | Msa1321000 | 0.813575 | 2.387934e-51 | -8.615850e-47 |
| Msa0717260 | Msa1329920 | 0.818538 | 1.860668e-52 | -8.615850e-47 |
| Msa0717260 | Msa1339940 | 0.881583 | 2.127815e-70 | -8.615850e-47 |
| Msa0717260 | Msa1342430 | 0.813668 | 2.278230e-51 | -8.615850e-47 |
| Msa0717260 | Msa1343820 | 0.802160 | 6.401824e-49 | -8.615850e-47 |
| Msa0717260 | Msa1345420 | 0.805445 | 1.330623e-49 | -8.615850e-47 |
| Msa0717260 | Msa1369700 | 0.883705 | 3.577876e-71 | -8.615850e-47 |
| Msa0717260 | Msa1379990 | 0.815179 | 1.055504e-51 | -8.615850e-47 |
| Msa0717260 | Msa1395870 | 0.878037 | 3.883199e-69 | -8.615850e-47 |
| Msa0717260 | Msa1397250 | 0.861350 | 1.091172e-63 | -8.615850e-47 |
| Msa0717260 | Msa1397340 | 0.809230 | 2.096419e-50 | -8.615850e-47 |
| Msa0717260 | Msa1399560 | 0.896773 | 2.673128e-76 | -8.615850e-47 |
| Msa0717260 | Msa1401150 | 0.852774 | 3.702530e-61 | -8.615850e-47 |
| Msa0717260 | Msa1403970 | 0.803641 | 3.163391e-49 | -8.615850e-47 |
| Msa0717260 | Msa1405180 | 0.808669 | 2.765084e-50 | -8.615850e-47 |
| Msa0717260 | Msa1420060 | 0.815381 | 9.516786e-52 | -8.615850e-47 |
| Msa0717260 | Msa1423450 | 0.824163 | 9.368928e-54 | -8.615850e-47 |
| Msa0717260 | Msa1429250 | 0.802196 | 6.292276e-49 | -8.615850e-47 |
| Msa0717260 | Msa1431000 | 0.812649 | 3.812460e-51 | -8.615850e-47 |
| Msa0717260 | Msa1437190 | 0.860590 | 1.858040e-63 | -8.615850e-47 |
| Msa0717260 | Msa1440340 | 0.838261 | 3.194800e-57 | -8.615850e-47 |
| Msa0717260 | Msa1443840 | 0.885890 | 5.504028e-72 | -8.615850e-47 |
| Msa0717260 | Msa1449730 | 0.820701 | 5.968322e-53 | -8.615850e-47 |
| Msa0717260 | Msa1452060 | 0.882690 | 8.433226e-71 | -8.615850e-47 |
| Msa0717260 | Msa1460380 | 0.883117 | 5.885053e-71 | -8.615850e-47 |
| Msa0717260 | Msa1460890 | 0.811238 | 7.735571e-51 | -8.615850e-47 |
| Msa0120730 | Msa0717260 | 0.801764 | 7.719212e-49 | -8.615850e-47 |
| Msa0141100 | Msa0717260 | 0.887712 | 1.121253e-72 | -8.615850e-47 |
| Msa0148340 | Msa0717260 | 0.815337 | 9.736568e-52 | -8.615850e-47 |
| Msa0153420 | Msa0717260 | 0.825091 | 5.663770e-54 | -8.615850e-47 |
| Msa0157290 | Msa0717260 | 0.816479 | 5.413529e-52 | -8.615850e-47 |
| Msa0161680 | Msa0717260 | 0.811126 | 8.183443e-51 | -8.615850e-47 |
| Msa0172350 | Msa0717260 | 0.804422 | 2.176561e-49 | -8.615850e-47 |
| Msa0183750 | Msa0717260 | 0.868101 | 8.381749e-66 | -8.615850e-47 |
| Msa0185380 | Msa0717260 | 0.807195 | 5.692148e-50 | -8.615850e-47 |
| Msa0185480 | Msa0717260 | 0.807549 | 4.788126e-50 | -8.615850e-47 |
| Msa0191040 | Msa0717260 | 0.870251 | 1.680855e-66 | -8.615850e-47 |
| Msa0206800 | Msa0717260 | 0.815376 | 9.544083e-52 | -8.615850e-47 |
| Msa0208520 | Msa0717260 | 0.801310 | 9.563236e-49 | -8.615850e-47 |
| Msa0220300 | Msa0717260 | 0.860676 | 1.749316e-63 | -8.615850e-47 |
| Msa0225600 | Msa0717260 | 0.854174 | 1.467489e-61 | -8.615850e-47 |
| Msa0233340 | Msa0717260 | 0.870276 | 1.648935e-66 | -8.615850e-47 |
| Msa0236440 | Msa0717260 | 0.814320 | 1.635731e-51 | -8.615850e-47 |
| Msa0371540 | Msa0717260 | 0.810086 | 1.372497e-50 | -8.615850e-47 |
| Msa0374850 | Msa0717260 | 0.890159 | 1.267410e-73 | -8.615850e-47 |
| Msa0375090 | Msa0717260 | 0.886288 | 3.896570e-72 | -8.615850e-47 |
| Msa0385670 | Msa0717260 | 0.844121 | 9.194958e-59 | -8.615850e-47 |
| Msa0418000 | Msa0717260 | 0.800399 | 1.468028e-48 | -8.615850e-47 |
| Msa0419820 | Msa0717260 | 0.830527 | 2.792940e-55 | -8.615850e-47 |
| Msa0423360 | Msa0717260 | -0.813212 | 2.869801e-51 | -8.615850e-47 |
| Msa0435670 | Msa0717260 | 0.845195 | 4.724197e-59 | -8.615850e-47 |
| Msa0436460 | Msa0717260 | 0.816402 | 5.634853e-52 | -8.615850e-47 |
| Msa0436500 | Msa0717260 | 0.805282 | 1.439270e-49 | -8.615850e-47 |
| Msa0470340 | Msa0717260 | 0.893862 | 4.230983e-75 | -8.615850e-47 |
| Msa0470860 | Msa0717260 | 0.863792 | 1.932683e-64 | -8.615850e-47 |
| Msa0479680 | Msa0717260 | 0.835635 | 1.495928e-56 | -8.615850e-47 |
| Msa0479700 | Msa0717260 | 0.830607 | 2.670164e-55 | -8.615850e-47 |
| Msa0480950 | Msa0717260 | 0.884640 | 1.613488e-71 | -8.615850e-47 |
| Msa0481110 | Msa0717260 | 0.847412 | 1.175895e-59 | -8.615850e-47 |
| Msa0251240 | Msa0717260 | 0.859552 | 3.821217e-63 | -8.615850e-47 |
| Msa0257680 | Msa0717260 | 0.800595 | 1.338996e-48 | -8.615850e-47 |
| Msa0266450 | Msa0717260 | 0.854699 | 1.034013e-61 | -8.615850e-47 |
| Msa0267760 | Msa0717260 | 0.802677 | 5.007456e-49 | -8.615850e-47 |
| Msa0271040 | Msa0717260 | 0.808079 | 3.694029e-50 | -8.615850e-47 |
| Msa0288190 | Msa0717260 | 0.807205 | 5.663857e-50 | -8.615850e-47 |
| Msa0288200 | Msa0717260 | 0.809736 | 1.633011e-50 | -8.615850e-47 |
| Msa0299430 | Msa0717260 | 0.803462 | 3.446942e-49 | -8.615850e-47 |
| Msa0301200 | Msa0717260 | 0.801816 | 7.531962e-49 | -8.615850e-47 |
| Msa0309350 | Msa0717260 | 0.814859 | 1.243137e-51 | -8.615850e-47 |
| Msa0311690 | Msa0717260 | 0.862365 | 5.335462e-64 | -8.615850e-47 |
| Msa0315250 | Msa0717260 | 0.840374 | 9.038146e-58 | -8.615850e-47 |
| Msa0326540 | Msa0717260 | 0.834065 | 3.718064e-56 | -8.615850e-47 |
| Msa0334500 | Msa0717260 | 0.824077 | 9.812012e-54 | -8.615850e-47 |
| Msa0483860 | Msa0717260 | 0.803795 | 2.939334e-49 | -8.615850e-47 |
| Msa0503580 | Msa0717260 | 0.807185 | 5.719174e-50 | -8.615850e-47 |
| Msa0505360 | Msa0717260 | 0.806932 | 6.470360e-50 | -8.615850e-47 |
| Msa0508650 | Msa0717260 | 0.800458 | 1.428071e-48 | -8.615850e-47 |
| Msa0517340 | Msa0717260 | 0.805956 | 1.039025e-49 | -8.615850e-47 |
| Msa0520510 | Msa0717260 | 0.817683 | 2.903286e-52 | -8.615850e-47 |
| Msa0531430 | Msa0717260 | 0.919821 | 2.785612e-87 | -8.615850e-47 |
| Msa0534570 | Msa0717260 | 0.864565 | 1.109616e-64 | -8.615850e-47 |
| Msa0534590 | Msa0717260 | 0.905319 | 4.868776e-80 | -8.615850e-47 |
| Msa0548620 | Msa0717260 | 0.800457 | 1.428688e-48 | -8.615850e-47 |
| Msa0548660 | Msa0717260 | 0.801764 | 7.720666e-49 | -8.615850e-47 |
| Msa0557680 | Msa0717260 | 0.810341 | 1.209654e-50 | -8.615850e-47 |
| Msa0565600 | Msa0717260 | 0.881615 | 2.070932e-70 | -8.615850e-47 |
| Msa0581760 | Msa0717260 | 0.803874 | 2.830067e-49 | -8.615850e-47 |
| Msa0590800 | Msa0717260 | 0.894364 | 2.643309e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717260 | MtrunA17_Chr5g0405171 | 97.101 | 207 | 6 | 0 | 1 | 207 | 1 | 207 | 5.07e-153 | 422 |
| Msa0717260 | MtrunA17_Chr8g0372141 | 76.410 | 195 | 43 | 3 | 14 | 207 | 1 | 193 | 2.38e-108 | 308 |
| Msa0717260 | MtrunA17_Chr2g0277151 | 53.846 | 182 | 80 | 1 | 25 | 206 | 3 | 180 | 1.81e-66 | 202 |
| Msa0717260 | MtrunA17_Chr4g0063501 | 58.571 | 140 | 54 | 1 | 25 | 164 | 5 | 140 | 1.09e-56 | 177 |
| Msa0717260 | MtrunA17_Chr4g0003581 | 55.479 | 146 | 57 | 2 | 25 | 168 | 9 | 148 | 2.08e-55 | 174 |
| Msa0717260 | MtrunA17_Chr2g0332851 | 54.225 | 142 | 60 | 2 | 25 | 165 | 9 | 146 | 3.24e-51 | 163 |
| Msa0717260 | MtrunA17_Chr2g0332841 | 52.817 | 142 | 62 | 2 | 25 | 165 | 9 | 146 | 3.76e-49 | 157 |
| Msa0717260 | MtrunA17_Chr4g0020201 | 47.333 | 150 | 77 | 2 | 17 | 165 | 26 | 174 | 8.11e-48 | 155 |
| Msa0717260 | MtrunA17_Chr1g0212241 | 46.617 | 133 | 66 | 2 | 42 | 173 | 3 | 131 | 1.79e-39 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717260 | AT1G15380.2 | 58.993 | 139 | 53 | 1 | 25 | 163 | 9 | 143 | 1.52e-58 | 182 |
| Msa0717260 | AT1G15380.1 | 58.993 | 139 | 53 | 1 | 25 | 163 | 9 | 143 | 1.52e-58 | 182 |
| Msa0717260 | AT1G80160.1 | 57.639 | 144 | 57 | 2 | 25 | 168 | 9 | 148 | 2.88e-58 | 181 |
| Msa0717260 | AT1G80160.3 | 57.447 | 141 | 56 | 2 | 25 | 165 | 50 | 186 | 1.14e-57 | 181 |
| Msa0717260 | AT2G28420.1 | 52.083 | 144 | 65 | 2 | 26 | 168 | 17 | 157 | 1.39e-52 | 167 |
| Msa0717260 | AT1G80160.2 | 53.000 | 100 | 43 | 2 | 69 | 168 | 27 | 122 | 5.27e-33 | 116 |
Find 44 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCTTCTTTCAAATTTAC+TGG | 0.188868 | 5_1:-10965799 | Msa0717260:CDS |
| CATATGGTGTTTAAAATATA+TGG | 0.250719 | 5_1:-10964721 | Msa0717260:three_prime_UTR |
| TGGTTATCCTTGGGATTAAT+AGG | 0.256572 | 5_1:+10965577 | None:intergenic |
| CTCTTAAAGCTATGGCTTCT+AGG | 0.268260 | 5_1:+10965030 | None:intergenic |
| AAGATATGTTGGAGGATATT+AGG | 0.278431 | 5_1:-10964821 | Msa0717260:three_prime_UTR |
| GGTAGAAGATGAAGGAATTA+AGG | 0.296959 | 5_1:-10965157 | Msa0717260:CDS |
| GAGAGAACAAAAGTGGAAAA+TGG | 0.331776 | 5_1:-10965953 | Msa0717260:CDS |
| AAATTTACAATCAATACTTT+TGG | 0.332571 | 5_1:-10964614 | Msa0717260:three_prime_UTR |
| TAAGAAGAGATTAGAAGAAA+AGG | 0.341886 | 5_1:-10965202 | Msa0717260:CDS |
| GAAGCAGTGCATGAAGAAAT+AGG | 0.352827 | 5_1:+10965060 | None:intergenic |
| GAATCCTCCACACTTGGAAT+TGG | 0.366403 | 5_1:+10964999 | None:intergenic |
| CATGAAGAAATAGGAATGAT+TGG | 0.374847 | 5_1:+10965069 | None:intergenic |
| AAGAAGAGATTAGAAGAAAA+GGG | 0.385631 | 5_1:-10965201 | Msa0717260:CDS |
| TGAATTGTATTCGTAACATA+TGG | 0.408392 | 5_1:-10964737 | Msa0717260:three_prime_UTR |
| AGCTCAATCATGTAGCCATC+AGG | 0.416541 | 5_1:+10965111 | None:intergenic |
| GAATGAGATATGGTTATCCT+TGG | 0.430947 | 5_1:+10965567 | None:intergenic |
| GGATAACCATATCTCATTCC+AGG | 0.432811 | 5_1:-10965563 | Msa0717260:intron |
| GAAAGAAGATGGCCGTTTGA+TGG | 0.435328 | 5_1:+10965810 | None:intergenic |
| ATTCATTGAGAGAACAAAAG+TGG | 0.461029 | 5_1:-10965960 | Msa0717260:CDS |
| GTATCAAATTCATCAATGTC+TGG | 0.469039 | 5_1:+10965619 | None:intergenic |
| GAATGTAAAATTGTTAGTCT+TGG | 0.473770 | 5_1:-10964799 | Msa0717260:three_prime_UTR |
| AAAGAAGATGGCCGTTTGAT+GGG | 0.480045 | 5_1:+10965811 | None:intergenic |
| ATGAAGAAATAGGAATGATT+GGG | 0.499317 | 5_1:+10965070 | None:intergenic |
| CTGCATGAATCCTCCACACT+TGG | 0.500461 | 5_1:+10964993 | None:intergenic |
| CCAGTAAATTTGAAAGAAGA+TGG | 0.504020 | 5_1:+10965799 | None:intergenic |
| AATGAGATATGGTTATCCTT+GGG | 0.506176 | 5_1:+10965568 | None:intergenic |
| CTTTCAAATTTACTGGAGCA+TGG | 0.508696 | 5_1:-10965792 | Msa0717260:intron |
| ACGTAGATCTCTTAAAGCTA+TGG | 0.515327 | 5_1:+10965022 | None:intergenic |
| ATTCATGCAGAATGTTATGA+TGG | 0.532345 | 5_1:-10964980 | Msa0717260:CDS |
| AGAGCAGAGTGGTGGGTCCA+AGG | 0.539966 | 5_1:-10964766 | Msa0717260:three_prime_UTR |
| TCATGTAGCCATCAGGGTCA+TGG | 0.545015 | 5_1:+10965118 | None:intergenic |
| AATGAGATATGTTACAGCAT+TGG | 0.548154 | 5_1:-10965178 | Msa0717260:CDS |
| TAATTGTGAGAGCAGAGTGG+TGG | 0.567120 | 5_1:-10964774 | Msa0717260:three_prime_UTR |
| ACAGCATTGGTAGAAGATGA+AGG | 0.580373 | 5_1:-10965165 | Msa0717260:CDS |
| GTGTTCTTCCATGACCCTGA+TGG | 0.589307 | 5_1:-10965126 | Msa0717260:CDS |
| ACATGATTCAATGAGAGCAA+TGG | 0.593307 | 5_1:+10965898 | None:intergenic |
| AACGAGGCCTATTAATCCCA+AGG | 0.600112 | 5_1:-10965584 | Msa0717260:CDS |
| GCTCAATCATGTAGCCATCA+GGG | 0.602960 | 5_1:+10965112 | None:intergenic |
| AATTGTGAGAGCAGAGTGGT+GGG | 0.617021 | 5_1:-10964773 | Msa0717260:three_prime_UTR |
| TCTACGTCCAATTCCAAGTG+TGG | 0.632988 | 5_1:-10965006 | Msa0717260:CDS |
| TATGATGGAAAGCTTGAGCA+TGG | 0.636263 | 5_1:-10964965 | Msa0717260:CDS |
| ACGTCCAATTCCAAGTGTGG+AGG | 0.659642 | 5_1:-10965003 | Msa0717260:CDS |
| GTTTAATTGTGAGAGCAGAG+TGG | 0.701131 | 5_1:-10964777 | Msa0717260:three_prime_UTR |
| ATACTTACATGAATGAAACG+AGG | 0.744566 | 5_1:-10965600 | Msa0717260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGCTTATTTTTTATATTTT+TGG | - | chr5_1:10964801-10964820 | Msa0717260:three_prime_UTR | 10.0% |
| !! | AAAAAAAAAAAAAGATATGT+TGG | - | chr5_1:10965737-10965756 | Msa0717260:intron | 10.0% |
| !! | AAAAAGTTAGTATATTTATA+AGG | + | chr5_1:10965891-10965910 | None:intergenic | 10.0% |
| !!! | TAGCTTATTTTTTATATTTT+TGG | - | chr5_1:10964801-10964820 | Msa0717260:three_prime_UTR | 10.0% |
| !! | AAAAAAAAAAAAAGATATGT+TGG | - | chr5_1:10965737-10965756 | Msa0717260:intron | 10.0% |
| !! | AAAAAGTTAGTATATTTATA+AGG | + | chr5_1:10965891-10965910 | None:intergenic | 10.0% |
| !!! | TATAAATCTTTATTTTTACC+TGG | + | chr5_1:10965027-10965046 | None:intergenic | 15.0% |
| !!! | AATATAGTCATTTTTTGAAA+TGG | - | chr5_1:10965056-10965075 | Msa0717260:CDS | 15.0% |
| !! | TATCTGATATAACAAAAAAA+AGG | + | chr5_1:10965686-10965705 | None:intergenic | 15.0% |
| !!! | TATATGGTTAAATATGTTTT+TGG | - | chr5_1:10965864-10965883 | Msa0717260:CDS | 15.0% |
| !!! | TATTGATTGTAAATTTTACA+TGG | + | chr5_1:10965951-10965970 | None:intergenic | 15.0% |
| !!! | AAATTTACAATCAATACTTT+TGG | - | chr5_1:10965955-10965974 | Msa0717260:CDS | 15.0% |
| !!! | TATAAATCTTTATTTTTACC+TGG | + | chr5_1:10965027-10965046 | None:intergenic | 15.0% |
| !!! | AATATAGTCATTTTTTGAAA+TGG | - | chr5_1:10965056-10965075 | Msa0717260:CDS | 15.0% |
| !! | TATCTGATATAACAAAAAAA+AGG | + | chr5_1:10965686-10965705 | None:intergenic | 15.0% |
| !!! | TATATGGTTAAATATGTTTT+TGG | - | chr5_1:10965864-10965883 | Msa0717260:CDS | 15.0% |
| !!! | TATTGATTGTAAATTTTACA+TGG | + | chr5_1:10965951-10965970 | None:intergenic | 15.0% |
| !!! | AAATTTACAATCAATACTTT+TGG | - | chr5_1:10965955-10965974 | Msa0717260:CDS | 15.0% |
| !!! | CTTTTAACTTTTTTTTTTGC+AGG | - | chr5_1:10964888-10964907 | Msa0717260:three_prime_UTR | 20.0% |
| !!! | TTTTGCAGGTTTTATAATTA+TGG | - | chr5_1:10964902-10964921 | Msa0717260:three_prime_UTR | 20.0% |
| !!! | AGGTTTTATAATTATGGTAT+TGG | - | chr5_1:10964908-10964927 | Msa0717260:three_prime_UTR | 20.0% |
| !! | GCACATAATAATTATAACAA+AGG | + | chr5_1:10965218-10965237 | None:intergenic | 20.0% |
| !! | TGTTATAATTATTATGTGCA+TGG | - | chr5_1:10965219-10965238 | Msa0717260:CDS | 20.0% |
| !!! | CCATATTGTATATCAATTTT+TGG | + | chr5_1:10965317-10965336 | None:intergenic | 20.0% |
| !! | CCAAAAATTGATATACAATA+TGG | - | chr5_1:10965314-10965333 | Msa0717260:intron | 20.0% |
| !! | AAAAAAAAAAGATATGTTGG+AGG | - | chr5_1:10965740-10965759 | Msa0717260:intron | 20.0% |
| !!! | CATATGGTGTTTAAAATATA+TGG | - | chr5_1:10965848-10965867 | Msa0717260:CDS | 20.0% |
| !!! | CTTTTAACTTTTTTTTTTGC+AGG | - | chr5_1:10964888-10964907 | Msa0717260:three_prime_UTR | 20.0% |
| !!! | TTTTGCAGGTTTTATAATTA+TGG | - | chr5_1:10964902-10964921 | Msa0717260:three_prime_UTR | 20.0% |
| !!! | AGGTTTTATAATTATGGTAT+TGG | - | chr5_1:10964908-10964927 | Msa0717260:three_prime_UTR | 20.0% |
| !! | GCACATAATAATTATAACAA+AGG | + | chr5_1:10965218-10965237 | None:intergenic | 20.0% |
| !! | TGTTATAATTATTATGTGCA+TGG | - | chr5_1:10965219-10965238 | Msa0717260:CDS | 20.0% |
| !!! | CCATATTGTATATCAATTTT+TGG | + | chr5_1:10965317-10965336 | None:intergenic | 20.0% |
| !! | CCAAAAATTGATATACAATA+TGG | - | chr5_1:10965314-10965333 | Msa0717260:intron | 20.0% |
| !! | AAAAAAAAAAGATATGTTGG+AGG | - | chr5_1:10965740-10965759 | Msa0717260:intron | 20.0% |
| !!! | CATATGGTGTTTAAAATATA+TGG | - | chr5_1:10965848-10965867 | Msa0717260:CDS | 20.0% |
| !! | CAATTTTATGAGGATGTTTT+GGG | - | chr5_1:10964728-10964747 | Msa0717260:three_prime_UTR | 25.0% |
| !!! | GTCATTTTTTGAAATGGTTA+TGG | - | chr5_1:10965062-10965081 | Msa0717260:CDS | 25.0% |
| ! | AAAGGTCATAATACAAAAAG+TGG | + | chr5_1:10965200-10965219 | None:intergenic | 25.0% |
| ! | TAAGTAAATAATTAACCGCA+TGG | - | chr5_1:10965251-10965270 | Msa0717260:intron | 25.0% |
| ! | TAAGAAGAGATTAGAAGAAA+AGG | - | chr5_1:10965367-10965386 | Msa0717260:intron | 25.0% |
| ! | AAGAAGAGATTAGAAGAAAA+GGG | - | chr5_1:10965368-10965387 | Msa0717260:intron | 25.0% |
| ! | ATGAAGAAATAGGAATGATT+GGG | + | chr5_1:10965502-10965521 | None:intergenic | 25.0% |
| !! | GAATGTAAAATTGTTAGTCT+TGG | - | chr5_1:10965770-10965789 | Msa0717260:intron | 25.0% |
| !! | AATACAATTCAACTTTTCCT+TGG | + | chr5_1:10965823-10965842 | None:intergenic | 25.0% |
| ! | TGAATTGTATTCGTAACATA+TGG | - | chr5_1:10965832-10965851 | Msa0717260:CDS | 25.0% |
| !! | CAATTTTATGAGGATGTTTT+GGG | - | chr5_1:10964728-10964747 | Msa0717260:three_prime_UTR | 25.0% |
| !!! | GTCATTTTTTGAAATGGTTA+TGG | - | chr5_1:10965062-10965081 | Msa0717260:CDS | 25.0% |
| ! | AAAGGTCATAATACAAAAAG+TGG | + | chr5_1:10965200-10965219 | None:intergenic | 25.0% |
| ! | TAAGTAAATAATTAACCGCA+TGG | - | chr5_1:10965251-10965270 | Msa0717260:intron | 25.0% |
| ! | TAAGAAGAGATTAGAAGAAA+AGG | - | chr5_1:10965367-10965386 | Msa0717260:intron | 25.0% |
| ! | AAGAAGAGATTAGAAGAAAA+GGG | - | chr5_1:10965368-10965387 | Msa0717260:intron | 25.0% |
| ! | ATGAAGAAATAGGAATGATT+GGG | + | chr5_1:10965502-10965521 | None:intergenic | 25.0% |
| !! | GAATGTAAAATTGTTAGTCT+TGG | - | chr5_1:10965770-10965789 | Msa0717260:intron | 25.0% |
| !! | AATACAATTCAACTTTTCCT+TGG | + | chr5_1:10965823-10965842 | None:intergenic | 25.0% |
| ! | TGAATTGTATTCGTAACATA+TGG | - | chr5_1:10965832-10965851 | Msa0717260:CDS | 25.0% |
| ATTCATTGAGAGAACAAAAG+TGG | - | chr5_1:10964609-10964628 | Msa0717260:three_prime_UTR | 30.0% | |
| ! | GGAATCTATGCAATTTTATG+AGG | - | chr5_1:10964718-10964737 | Msa0717260:three_prime_UTR | 30.0% |
| ! | GCAATTTTATGAGGATGTTT+TGG | - | chr5_1:10964727-10964746 | Msa0717260:three_prime_UTR | 30.0% |
| CCAGTAAATTTGAAAGAAGA+TGG | + | chr5_1:10964773-10964792 | None:intergenic | 30.0% | |
| CCATCTTCTTTCAAATTTAC+TGG | - | chr5_1:10964770-10964789 | Msa0717260:three_prime_UTR | 30.0% | |
| GTATCAAATTCATCAATGTC+TGG | + | chr5_1:10964953-10964972 | None:intergenic | 30.0% | |
| ATACTTACATGAATGAAACG+AGG | - | chr5_1:10964969-10964988 | Msa0717260:CDS | 30.0% | |
| AATGAGATATGGTTATCCTT+GGG | + | chr5_1:10965004-10965023 | None:intergenic | 30.0% | |
| ! | TTTTTACCTGGAATGAGATA+TGG | + | chr5_1:10965015-10965034 | None:intergenic | 30.0% |
| ATGGAAATCTATGCATATGT+AGG | - | chr5_1:10965116-10965135 | Msa0717260:CDS | 30.0% | |
| TGGAAATCTATGCATATGTA+GGG | - | chr5_1:10965117-10965136 | Msa0717260:CDS | 30.0% | |
| !!! | ATATGGTTTTTTGCAGTGTA+CGG | - | chr5_1:10965331-10965350 | Msa0717260:intron | 30.0% |
| AATGAGATATGTTACAGCAT+TGG | - | chr5_1:10965391-10965410 | Msa0717260:intron | 30.0% | |
| CATGAAGAAATAGGAATGAT+TGG | + | chr5_1:10965503-10965522 | None:intergenic | 30.0% | |
| ATTCATGCAGAATGTTATGA+TGG | - | chr5_1:10965589-10965608 | Msa0717260:CDS | 30.0% | |
| AAGATATGTTGGAGGATATT+AGG | - | chr5_1:10965748-10965767 | Msa0717260:intron | 30.0% | |
| ATTCATTGAGAGAACAAAAG+TGG | - | chr5_1:10964609-10964628 | Msa0717260:three_prime_UTR | 30.0% | |
| ! | GGAATCTATGCAATTTTATG+AGG | - | chr5_1:10964718-10964737 | Msa0717260:three_prime_UTR | 30.0% |
| ! | GCAATTTTATGAGGATGTTT+TGG | - | chr5_1:10964727-10964746 | Msa0717260:three_prime_UTR | 30.0% |
| CCAGTAAATTTGAAAGAAGA+TGG | + | chr5_1:10964773-10964792 | None:intergenic | 30.0% | |
| CCATCTTCTTTCAAATTTAC+TGG | - | chr5_1:10964770-10964789 | Msa0717260:three_prime_UTR | 30.0% | |
| GTATCAAATTCATCAATGTC+TGG | + | chr5_1:10964953-10964972 | None:intergenic | 30.0% | |
| ATACTTACATGAATGAAACG+AGG | - | chr5_1:10964969-10964988 | Msa0717260:CDS | 30.0% | |
| AATGAGATATGGTTATCCTT+GGG | + | chr5_1:10965004-10965023 | None:intergenic | 30.0% | |
| ! | TTTTTACCTGGAATGAGATA+TGG | + | chr5_1:10965015-10965034 | None:intergenic | 30.0% |
| ATGGAAATCTATGCATATGT+AGG | - | chr5_1:10965116-10965135 | Msa0717260:CDS | 30.0% | |
| TGGAAATCTATGCATATGTA+GGG | - | chr5_1:10965117-10965136 | Msa0717260:CDS | 30.0% | |
| !!! | ATATGGTTTTTTGCAGTGTA+CGG | - | chr5_1:10965331-10965350 | Msa0717260:intron | 30.0% |
| AATGAGATATGTTACAGCAT+TGG | - | chr5_1:10965391-10965410 | Msa0717260:intron | 30.0% | |
| CATGAAGAAATAGGAATGAT+TGG | + | chr5_1:10965503-10965522 | None:intergenic | 30.0% | |
| ATTCATGCAGAATGTTATGA+TGG | - | chr5_1:10965589-10965608 | Msa0717260:CDS | 30.0% | |
| AAGATATGTTGGAGGATATT+AGG | - | chr5_1:10965748-10965767 | Msa0717260:intron | 30.0% | |
| GAGAGAACAAAAGTGGAAAA+TGG | - | chr5_1:10964616-10964635 | Msa0717260:three_prime_UTR | 35.0% | |
| ACATGATTCAATGAGAGCAA+TGG | + | chr5_1:10964674-10964693 | None:intergenic | 35.0% | |
| CTTTCAAATTTACTGGAGCA+TGG | - | chr5_1:10964777-10964796 | Msa0717260:three_prime_UTR | 35.0% | |
| TGGTTATCCTTGGGATTAAT+AGG | + | chr5_1:10964995-10965014 | None:intergenic | 35.0% | |
| GAATGAGATATGGTTATCCT+TGG | + | chr5_1:10965005-10965024 | None:intergenic | 35.0% | |
| AGCTAAATTTGTGATCCATG+CGG | + | chr5_1:10965269-10965288 | None:intergenic | 35.0% | |
| GGTAGAAGATGAAGGAATTA+AGG | - | chr5_1:10965412-10965431 | Msa0717260:intron | 35.0% | |
| ACGTAGATCTCTTAAAGCTA+TGG | + | chr5_1:10965550-10965569 | None:intergenic | 35.0% | |
| GAGAGAACAAAAGTGGAAAA+TGG | - | chr5_1:10964616-10964635 | Msa0717260:three_prime_UTR | 35.0% | |
| ACATGATTCAATGAGAGCAA+TGG | + | chr5_1:10964674-10964693 | None:intergenic | 35.0% | |
| CTTTCAAATTTACTGGAGCA+TGG | - | chr5_1:10964777-10964796 | Msa0717260:three_prime_UTR | 35.0% | |
| TGGTTATCCTTGGGATTAAT+AGG | + | chr5_1:10964995-10965014 | None:intergenic | 35.0% | |
| GAATGAGATATGGTTATCCT+TGG | + | chr5_1:10965005-10965024 | None:intergenic | 35.0% | |
| AGCTAAATTTGTGATCCATG+CGG | + | chr5_1:10965269-10965288 | None:intergenic | 35.0% | |
| GGTAGAAGATGAAGGAATTA+AGG | - | chr5_1:10965412-10965431 | Msa0717260:intron | 35.0% | |
| ACGTAGATCTCTTAAAGCTA+TGG | + | chr5_1:10965550-10965569 | None:intergenic | 35.0% | |
| ! | TCTTTTGTGCAGATCAGTGT+TGG | - | chr5_1:10964697-10964716 | Msa0717260:three_prime_UTR | 40.0% |
| !!! | TGGGTTTTGTTCCCATCAAA+CGG | - | chr5_1:10964747-10964766 | Msa0717260:three_prime_UTR | 40.0% |
| AAAGAAGATGGCCGTTTGAT+GGG | + | chr5_1:10964761-10964780 | None:intergenic | 40.0% | |
| GGATAACCATATCTCATTCC+AGG | - | chr5_1:10965006-10965025 | Msa0717260:CDS | 40.0% | |
| !! | ACAGCATTGGTAGAAGATGA+AGG | - | chr5_1:10965404-10965423 | Msa0717260:intron | 40.0% |
| GAAGCAGTGCATGAAGAAAT+AGG | + | chr5_1:10965512-10965531 | None:intergenic | 40.0% | |
| CTCTTAAAGCTATGGCTTCT+AGG | + | chr5_1:10965542-10965561 | None:intergenic | 40.0% | |
| ! | TATGATGGAAAGCTTGAGCA+TGG | - | chr5_1:10965604-10965623 | Msa0717260:CDS | 40.0% |
| GTTTAATTGTGAGAGCAGAG+TGG | - | chr5_1:10965792-10965811 | Msa0717260:intron | 40.0% | |
| ! | TCTTTTGTGCAGATCAGTGT+TGG | - | chr5_1:10964697-10964716 | Msa0717260:three_prime_UTR | 40.0% |
| !!! | TGGGTTTTGTTCCCATCAAA+CGG | - | chr5_1:10964747-10964766 | Msa0717260:three_prime_UTR | 40.0% |
| AAAGAAGATGGCCGTTTGAT+GGG | + | chr5_1:10964761-10964780 | None:intergenic | 40.0% | |
| GGATAACCATATCTCATTCC+AGG | - | chr5_1:10965006-10965025 | Msa0717260:CDS | 40.0% | |
| !! | ACAGCATTGGTAGAAGATGA+AGG | - | chr5_1:10965404-10965423 | Msa0717260:intron | 40.0% |
| GAAGCAGTGCATGAAGAAAT+AGG | + | chr5_1:10965512-10965531 | None:intergenic | 40.0% | |
| CTCTTAAAGCTATGGCTTCT+AGG | + | chr5_1:10965542-10965561 | None:intergenic | 40.0% | |
| ! | TATGATGGAAAGCTTGAGCA+TGG | - | chr5_1:10965604-10965623 | Msa0717260:CDS | 40.0% |
| GTTTAATTGTGAGAGCAGAG+TGG | - | chr5_1:10965792-10965811 | Msa0717260:intron | 40.0% | |
| GAAAGAAGATGGCCGTTTGA+TGG | + | chr5_1:10964762-10964781 | None:intergenic | 45.0% | |
| AACGAGGCCTATTAATCCCA+AGG | - | chr5_1:10964985-10965004 | Msa0717260:CDS | 45.0% | |
| GCTCAATCATGTAGCCATCA+GGG | + | chr5_1:10965460-10965479 | None:intergenic | 45.0% | |
| AGCTCAATCATGTAGCCATC+AGG | + | chr5_1:10965461-10965480 | None:intergenic | 45.0% | |
| TCTACGTCCAATTCCAAGTG+TGG | - | chr5_1:10965563-10965582 | Msa0717260:intron | 45.0% | |
| GAATCCTCCACACTTGGAAT+TGG | + | chr5_1:10965573-10965592 | None:intergenic | 45.0% | |
| TAATTGTGAGAGCAGAGTGG+TGG | - | chr5_1:10965795-10965814 | Msa0717260:CDS | 45.0% | |
| AATTGTGAGAGCAGAGTGGT+GGG | - | chr5_1:10965796-10965815 | Msa0717260:CDS | 45.0% | |
| GAAAGAAGATGGCCGTTTGA+TGG | + | chr5_1:10964762-10964781 | None:intergenic | 45.0% | |
| AACGAGGCCTATTAATCCCA+AGG | - | chr5_1:10964985-10965004 | Msa0717260:CDS | 45.0% | |
| GCTCAATCATGTAGCCATCA+GGG | + | chr5_1:10965460-10965479 | None:intergenic | 45.0% | |
| AGCTCAATCATGTAGCCATC+AGG | + | chr5_1:10965461-10965480 | None:intergenic | 45.0% | |
| TCTACGTCCAATTCCAAGTG+TGG | - | chr5_1:10965563-10965582 | Msa0717260:intron | 45.0% | |
| GAATCCTCCACACTTGGAAT+TGG | + | chr5_1:10965573-10965592 | None:intergenic | 45.0% | |
| TAATTGTGAGAGCAGAGTGG+TGG | - | chr5_1:10965795-10965814 | Msa0717260:CDS | 45.0% | |
| AATTGTGAGAGCAGAGTGGT+GGG | - | chr5_1:10965796-10965815 | Msa0717260:CDS | 45.0% | |
| !! | ATAAATTTATATACTAAAAA+TGG | - | chr5_1:10965097-10965116 | Msa0717260:CDS | 5.0% |
| !! | AAAAAATTTAGTTATAAATA+GGG | + | chr5_1:10965982-10966001 | None:intergenic | 5.0% |
| !! | AAAAAAATTTAGTTATAAAT+AGG | + | chr5_1:10965983-10966002 | None:intergenic | 5.0% |
| !! | ATAAATTTATATACTAAAAA+TGG | - | chr5_1:10965097-10965116 | Msa0717260:CDS | 5.0% |
| !! | AAAAAATTTAGTTATAAATA+GGG | + | chr5_1:10965982-10966001 | None:intergenic | 5.0% |
| !! | AAAAAAATTTAGTTATAAAT+AGG | + | chr5_1:10965983-10966002 | None:intergenic | 5.0% |
| GTGTTCTTCCATGACCCTGA+TGG | - | chr5_1:10965443-10965462 | Msa0717260:intron | 50.0% | |
| TCATGTAGCCATCAGGGTCA+TGG | + | chr5_1:10965454-10965473 | None:intergenic | 50.0% | |
| ACGTCCAATTCCAAGTGTGG+AGG | - | chr5_1:10965566-10965585 | Msa0717260:CDS | 50.0% | |
| CTGCATGAATCCTCCACACT+TGG | + | chr5_1:10965579-10965598 | None:intergenic | 50.0% | |
| GTGTTCTTCCATGACCCTGA+TGG | - | chr5_1:10965443-10965462 | Msa0717260:intron | 50.0% | |
| TCATGTAGCCATCAGGGTCA+TGG | + | chr5_1:10965454-10965473 | None:intergenic | 50.0% | |
| ACGTCCAATTCCAAGTGTGG+AGG | - | chr5_1:10965566-10965585 | Msa0717260:CDS | 50.0% | |
| CTGCATGAATCCTCCACACT+TGG | + | chr5_1:10965579-10965598 | None:intergenic | 50.0% | |
| !! | AGAGCAGAGTGGTGGGTCCA+AGG | - | chr5_1:10965803-10965822 | Msa0717260:CDS | 60.0% |
| !! | AGAGCAGAGTGGTGGGTCCA+AGG | - | chr5_1:10965803-10965822 | Msa0717260:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 10964570 | 10966021 | 10964570 | ID=Msa0717260;Name=Msa0717260 |
| chr5_1 | mRNA | 10964570 | 10966021 | 10964570 | ID=Msa0717260-mRNA-1;Parent=Msa0717260;Name=Msa0717260-mRNA-1;_AED=0.14;_eAED=0.14;_QI=26|1|1|1|1|1|3|372|207 |
| chr5_1 | exon | 10964570 | 10965244 | 10964570 | ID=Msa0717260-mRNA-1:exon:4480;Parent=Msa0717260-mRNA-1 |
| chr5_1 | exon | 10965564 | 10965681 | 10965564 | ID=Msa0717260-mRNA-1:exon:4479;Parent=Msa0717260-mRNA-1 |
| chr5_1 | exon | 10965793 | 10966021 | 10965793 | ID=Msa0717260-mRNA-1:exon:4478;Parent=Msa0717260-mRNA-1 |
| chr5_1 | five_prime_UTR | 10965996 | 10966021 | 10965996 | ID=Msa0717260-mRNA-1:five_prime_utr;Parent=Msa0717260-mRNA-1 |
| chr5_1 | CDS | 10965793 | 10965995 | 10965793 | ID=Msa0717260-mRNA-1:cds;Parent=Msa0717260-mRNA-1 |
| chr5_1 | CDS | 10965564 | 10965681 | 10965564 | ID=Msa0717260-mRNA-1:cds;Parent=Msa0717260-mRNA-1 |
| chr5_1 | CDS | 10964942 | 10965244 | 10964942 | ID=Msa0717260-mRNA-1:cds;Parent=Msa0717260-mRNA-1 |
| chr5_1 | three_prime_UTR | 10964570 | 10964941 | 10964570 | ID=Msa0717260-mRNA-1:three_prime_utr;Parent=Msa0717260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
