AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0534590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0534590 MtrunA17_Chr4g0008511 93.035 201 14 0 1 201 1 201 3.54e-135 388
Msa0534590 MtrunA17_Chr4g0007231 43.902 205 91 9 1 192 1 194 1.54e-45 150
Msa0534590 MtrunA17_Chr4g0008481 46.535 202 92 8 1 192 1 196 3.96e-43 151
Msa0534590 MtrunA17_Chr4g0008481 29.167 192 110 6 8 188 274 450 6.32e-14 69.7
Msa0534590 MtrunA17_Chr4g0007631 44.388 196 92 8 1 189 1 186 9.96e-41 145
Msa0534590 MtrunA17_Chr4g0007631 25.758 198 111 7 8 188 267 445 5.16e-12 64.3
Msa0534590 MtrunA17_Chr7g0241311 40.107 187 99 5 4 188 6 181 1.51e-40 138
Msa0534590 MtrunA17_Chr4g0007341 39.698 199 106 6 1 192 1 192 1.03e-37 135
Msa0534590 MtrunA17_Chr7g0241421 43.169 183 87 5 11 191 17 184 1.52e-36 134
Msa0534590 MtrunA17_Chr7g0237451 39.086 197 93 5 2 196 6 177 4.52e-36 131
Msa0534590 MtrunA17_Chr7g0241161 39.683 189 95 7 5 189 12 185 2.16e-33 124
Msa0534590 MtrunA17_Chr7g0241261 38.660 194 101 6 1 191 1 179 3.02e-33 123
Msa0534590 MtrunA17_Chr7g0241431 39.227 181 92 7 14 191 1 166 5.10e-33 123
Msa0534590 MtrunA17_Chr7g0218371 43.646 181 82 8 5 182 11 174 6.03e-33 122
Msa0534590 MtrunA17_Chr7g0239891 39.896 193 99 4 2 194 5 180 1.05e-32 123
Msa0534590 MtrunA17_Chr1g0166321 37.234 188 104 4 5 191 11 185 1.17e-32 122
Msa0534590 MtrunA17_Chr2g0291981 48.305 118 53 2 8 125 14 123 1.51e-32 114
Msa0534590 MtrunA17_Chr7g0241201 44.304 158 74 5 5 158 12 159 4.57e-31 117
Msa0534590 MtrunA17_Chr7g0241251 36.923 195 100 6 2 191 6 182 1.55e-30 116
Msa0534590 MtrunA17_Chr7g0241271 37.895 190 104 4 2 191 8 183 3.64e-30 113
Msa0534590 MtrunA17_Chr7g0241331 37.433 187 102 4 8 192 4 177 8.10e-30 115
Msa0534590 MtrunA17_Chr7g0239901 36.816 201 103 6 2 198 32 212 3.56e-29 113
Msa0534590 MtrunA17_Chr7g0239911 38.144 194 96 6 6 195 8 181 1.49e-28 111
Msa0534590 MtrunA17_Chr7g0239841 36.041 197 103 5 1 192 1 179 2.31e-28 110
Msa0534590 MtrunA17_Chr7g0239731 34.197 193 109 5 3 195 4 178 5.41e-28 109
Msa0534590 MtrunA17_Chr4g0007271 36.683 199 75 4 1 192 1 155 7.85e-28 109
Msa0534590 MtrunA17_Chr4g0007271 28.500 200 113 7 8 192 234 418 2.99e-13 67.8
Msa0534590 MtrunA17_Chr7g0238971 34.518 197 109 5 2 195 6 185 4.46e-26 104
Msa0534590 MtrunA17_Chr7g0241231 37.662 154 86 4 3 154 2 147 1.37e-25 97.1
Msa0534590 MtrunA17_Chr7g0238961 33.810 210 107 6 1 195 258 450 1.61e-25 103
Msa0534590 MtrunA17_Chr7g0238961 38.816 152 81 4 1 148 1 144 2.46e-25 102
Msa0534590 MtrunA17_Chr4g0007251 34.946 186 84 5 11 192 17 169 6.22e-25 101
Msa0534590 MtrunA17_Chr7g0239831 39.378 193 82 8 11 192 13 181 4.27e-24 99.0
Msa0534590 MtrunA17_Chr7g0239851 41.722 151 76 5 1 148 1 142 1.58e-23 97.4
Msa0534590 MtrunA17_Chr7g0239921 34.848 198 109 7 2 196 31 211 5.45e-22 93.2
Msa0534590 MtrunA17_Chr3g0078631 35.678 199 99 5 6 204 20 189 8.83e-21 89.4
Msa0534590 MtrunA17_Chr7g0239751 42.276 123 51 3 5 127 29 131 2.19e-20 85.5
Msa0534590 MtrunA17_Chr7g0241361 39.316 117 63 2 11 127 19 127 9.32e-20 84.3
Msa0534590 MtrunA17_Chr7g0241351 37.931 116 64 2 11 126 19 126 3.66e-19 82.0
Msa0534590 MtrunA17_Chr7g0241301 29.452 146 69 3 1 140 1 118 4.64e-17 74.3
Msa0534590 MtrunA17_Chr8g0355351 29.381 194 112 6 1 188 7 181 2.40e-15 72.0
Msa0534590 MtrunA17_Chr7g0239761 31.553 206 90 6 4 206 25 182 2.67e-15 72.8
Msa0534590 MtrunA17_Chr4g0007311 44.444 99 45 5 95 192 1 90 2.87e-15 70.1
Msa0534590 MtrunA17_Chr1g0212741 28.205 195 115 3 2 188 5 182 1.16e-14 70.5
Msa0534590 MtrunA17_Chr1g0212771 29.187 209 111 7 2 188 3 196 1.53e-14 69.3
Msa0534590 MtrunA17_Chr7g0239861 33.333 141 84 3 69 208 1 132 6.14e-14 69.7
Msa0534590 MtrunA17_Chr7g0263461 51.724 58 28 0 1 58 32 89 6.33e-14 64.7
Msa0534590 MtrunA17_Chr4g0007321 27.723 202 95 7 8 188 61 232 1.63e-13 67.8
Msa0534590 MtrunA17_Chr7g0229211 36.893 103 51 2 1 102 1 90 3.11e-13 66.6
Msa0534590 MtrunA17_Chr7g0229201 37.143 105 51 2 1 103 1 92 1.23e-12 64.7
Msa0534590 MtrunA17_Chr0c02g0489781 37.143 105 51 2 1 103 1 92 1.23e-12 64.7
Msa0534590 MtrunA17_Chr1g0212761 35.000 100 51 2 1 100 1 86 1.79e-12 62.4
Msa0534590 MtrunA17_Chr8g0355371 35.922 103 52 2 1 102 1 90 2.60e-12 64.3
Msa0534590 MtrunA17_Chr0c02g0489791 35.922 103 52 2 1 102 1 90 2.95e-12 63.9
Msa0534590 MtrunA17_Chr3g0110221 38.318 107 56 4 95 199 1 99 5.33e-12 63.9
Msa0534590 MtrunA17_Chr1g0212781 36.364 99 48 2 1 99 1 84 2.15e-11 62.4
Msa0534590 MtrunA17_Chr7g0241501 57.143 42 18 0 14 55 1 42 5.18e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0534590 AT5G01150.1 40.394 203 98 5 3 199 4 189 3.49e-39 140
Msa0534590 AT3G09110.1 38.835 206 100 6 3 203 4 188 1.37e-35 128
Msa0534590 AT3G09120.1 38.021 192 107 3 5 194 3 184 5.21e-34 123
Msa0534590 AT5G01120.1 39.474 190 92 6 11 192 12 186 1.10e-32 123
Msa0534590 AT5G43240.1 39.062 192 103 5 2 188 3 185 1.78e-31 120
Msa0534590 AT5G43240.3 39.062 192 103 5 2 188 3 185 1.78e-31 120
Msa0534590 AT5G43240.4 39.062 192 103 5 2 188 3 185 1.78e-31 120
Msa0534590 AT3G09140.2 35.545 211 102 6 3 194 4 199 2.98e-31 119
Msa0534590 AT3G09140.1 35.545 211 102 6 3 194 4 199 3.52e-31 119
Msa0534590 AT5G01130.1 39.594 197 96 7 3 197 4 179 1.39e-30 117
Msa0534590 AT5G01140.1 37.500 192 85 5 3 192 4 162 6.98e-27 107
Msa0534590 AT5G37320.1 37.500 192 92 8 18 195 19 196 3.89e-26 105

Find 63 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACACATAAAGTACTTTA+TGG 0.103538 4_1:+10083343 None:intergenic
AAAAGTCTCAAAGGAAATTT+TGG 0.165184 4_1:+10083680 None:intergenic
CCAAAGGTGGCTCCTCAATT+TGG 0.239522 4_1:-10081721 Msa0534590:three_prime_UTR
ATGAAGTTGCATGGAGATTT+TGG 0.248004 4_1:-10083236 Msa0534590:CDS
AAAATTTCCTTTGAGACTTT+TGG 0.250614 4_1:-10083678 Msa0534590:CDS
TCATGGTTCATAAGGCCTTT+AGG 0.297689 4_1:-10081760 Msa0534590:three_prime_UTR
TGGCACAATTGAATCTGCTT+TGG 0.331646 4_1:-10081521 Msa0534590:three_prime_UTR
AATATGATCATGTTGATTCT+TGG 0.335397 4_1:+10083547 None:intergenic
TGAGGAGCCACCTTTGGATT+TGG 0.337613 4_1:+10081727 None:intergenic
ACACCAATTGGATCTATTCT+AGG 0.341690 4_1:-10081853 Msa0534590:three_prime_UTR
GGCACAATTGAATCTGCTTT+GGG 0.350892 4_1:-10081520 Msa0534590:three_prime_UTR
CCAAATTGAGGAGCCACCTT+TGG 0.362907 4_1:+10081721 None:intergenic
ATTGTGCCATAAGGTGATCT+TGG 0.386765 4_1:+10081535 None:intergenic
ATGCAACCAAGTATCTCTTC+AGG 0.389997 4_1:+10083506 None:intergenic
TTTGATCCAAGATCACCTTA+TGG 0.391081 4_1:-10081541 Msa0534590:three_prime_UTR
TCAATCCTTCATGGTTCATA+AGG 0.394940 4_1:-10081768 Msa0534590:three_prime_UTR
ATTTGTTATTCCAATGTGAA+TGG 0.400477 4_1:-10081616 Msa0534590:three_prime_UTR
AGTTTCCTCACAACACCAAT+TGG 0.406778 4_1:-10081865 Msa0534590:three_prime_UTR
TGAAAGAATTCAATCCTTCA+TGG 0.410331 4_1:-10081777 Msa0534590:three_prime_UTR
GGGCAAGTTGTTGTTCTTGT+GGG 0.413363 4_1:-10083277 Msa0534590:CDS
TTGTTCTTGTGGGAAATTGA+TGG 0.413478 4_1:-10083267 Msa0534590:CDS
TTCCATTAGGAACTATCATT+AGG 0.414736 4_1:-10083577 Msa0534590:CDS
ATGGACTAATATAAAACTTA+AGG 0.429845 4_1:-10081959 Msa0534590:three_prime_UTR
AGCCTAATGATAGTTCCTAA+TGG 0.435674 4_1:+10083575 None:intergenic
TCTTCACAAAGATTTATTAG+TGG 0.444473 4_1:+10081685 None:intergenic
AGCCACCTTTGGATTTGGTA+AGG 0.450367 4_1:+10081732 None:intergenic
TAATATAAAACTTAAGGTAA+TGG 0.478261 4_1:-10081953 Msa0534590:three_prime_UTR
CCACCTTTGGATTTGGTAAG+GGG 0.490596 4_1:+10081734 None:intergenic
CCTACTTATTGGTATGGTAA+TGG 0.492706 4_1:-10081655 Msa0534590:three_prime_UTR
GCAGATTCAATTGTGCCATA+AGG 0.493493 4_1:+10081526 None:intergenic
TATATCAGTGAGAGGAGACT+TGG 0.494239 4_1:+10082050 None:intergenic
GGGGCAAGTTGTTGTTCTTG+TGG 0.497661 4_1:-10083278 Msa0534590:CDS
AGTGTAGAAAATTTAAATGA+TGG 0.502872 4_1:-10083467 Msa0534590:CDS
CTGCTTTGGGATTTGTGAAG+AGG 0.503837 4_1:-10081507 Msa0534590:three_prime_UTR
AAAGTGTTGCAAAACTCTCC+TGG 0.503982 4_1:-10083140 Msa0534590:intron
TGCTTCATGCAACCAAATTG+AGG 0.504685 4_1:+10081709 None:intergenic
TTTGGTAAGGGGTTACCTAA+AGG 0.505371 4_1:+10081745 None:intergenic
GACAAAGAAATGAAGTTGCA+TGG 0.513467 4_1:-10083245 Msa0534590:CDS
GCCACCTTTGGATTTGGTAA+GGG 0.525081 4_1:+10081733 None:intergenic
CCATTACCATACCAATAAGT+AGG 0.533560 4_1:+10081655 None:intergenic
GGCCATCACTATTTATTGTG+TGG 0.534751 4_1:-10081486 Msa0534590:three_prime_UTR
GCCATCACTATTTATTGTGT+GGG 0.535594 4_1:-10081485 Msa0534590:three_prime_UTR
AAAGCTCCTACTTATTGGTA+TGG 0.537812 4_1:-10081661 Msa0534590:three_prime_UTR
TGTCCTAGAATAGATCCAAT+TGG 0.538385 4_1:+10081850 None:intergenic
GATCAACCTGAAGAGATACT+TGG 0.556160 4_1:-10083512 Msa0534590:CDS
TCAACATTCTCGCCAAGACA+TGG 0.561002 4_1:-10081997 Msa0534590:three_prime_UTR
TTGTCAACCAAAAGTCTCAA+AGG 0.563317 4_1:+10083671 None:intergenic
TGATATCACTCCATTCACAT+TGG 0.568520 4_1:+10081606 None:intergenic
TCCATAAAGTACTTTATGTG+TGG 0.576189 4_1:-10083344 Msa0534590:CDS
GATACTATATGCTGAAGCTG+AGG 0.584783 4_1:-10081911 Msa0534590:three_prime_UTR
AGATTCTATGTAAGAAGTTG+AGG 0.588484 4_1:-10083388 Msa0534590:CDS
AAAGGCCTTATGAACCATGA+AGG 0.592293 4_1:+10081763 None:intergenic
TCCCACACAATAAATAGTGA+TGG 0.607267 4_1:+10081484 None:intergenic
ATACTATATGCTGAAGCTGA+GGG 0.609419 4_1:-10081910 Msa0534590:three_prime_UTR
ATGTGTGGAAAATGTTGTAG+AGG 0.622253 4_1:-10083329 Msa0534590:CDS
TTCTTACATAGAATCTCACA+AGG 0.622395 4_1:+10083395 None:intergenic
TAGATCCAATTGGTGTTGTG+AGG 0.624363 4_1:+10081860 None:intergenic
AGAATCTCACAAGGGTTGCG+CGG 0.625924 4_1:+10083404 None:intergenic
TTGATTCAGCTACAACTACA+CGG 0.626220 4_1:+10083639 None:intergenic
CCCCTTACCAAATCCAAAGG+TGG 0.639710 4_1:-10081734 Msa0534590:three_prime_UTR
TGTGTGGAAAATGTTGTAGA+GGG 0.643056 4_1:-10083328 Msa0534590:CDS
TAACCCCTTACCAAATCCAA+AGG 0.647813 4_1:-10081737 Msa0534590:three_prime_UTR
TCTTACATAGAATCTCACAA+GGG 0.749864 4_1:+10083396 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTTTAATATATTTTT+AGG - chr4_1:10082157-10082176 Msa0534590:intron 0.0%
!!! TAAATTTTTAATATATTTTT+AGG - chr4_1:10082157-10082176 Msa0534590:intron 0.0%
!! TATTTATATGGTAATTAAAT+TGG - chr4_1:10082419-10082438 Msa0534590:intron 10.0%
!! AAAAAATAATAATTTAGACA+TGG - chr4_1:10082904-10082923 Msa0534590:intron 10.0%
!! AAAATTAATTAAAGAACTTA+AGG + chr4_1:10082976-10082995 None:intergenic 10.0%
!! TATTTATATGGTAATTAAAT+TGG - chr4_1:10082419-10082438 Msa0534590:intron 10.0%
!! AAAAAATAATAATTTAGACA+TGG - chr4_1:10082904-10082923 Msa0534590:intron 10.0%
!! AAAATTAATTAAAGAACTTA+AGG + chr4_1:10082976-10082995 None:intergenic 10.0%
!!! TATATTTTTAGGAAAATGTT+TGG - chr4_1:10082168-10082187 Msa0534590:intron 15.0%
!!! AATTTTTCATGGTATTTATA+TGG - chr4_1:10082407-10082426 Msa0534590:intron 15.0%
!! AAAATTCTAATTTAAATGTG+AGG - chr4_1:10082621-10082640 Msa0534590:intron 15.0%
!!! TTAATTTTTAAACATGTGTA+TGG - chr4_1:10082988-10083007 Msa0534590:intron 15.0%
!!! TAATTTTTAAACATGTGTAT+GGG - chr4_1:10082989-10083008 Msa0534590:intron 15.0%
!!! TTAGTCCATTTTTTAAATTT+TGG + chr4_1:10083204-10083223 None:intergenic 15.0%
!! TAATATAAAACTTAAGGTAA+TGG - chr4_1:10083221-10083240 Msa0534590:CDS 15.0%
!!! TATATTTTTAGGAAAATGTT+TGG - chr4_1:10082168-10082187 Msa0534590:intron 15.0%
!!! AATTTTTCATGGTATTTATA+TGG - chr4_1:10082407-10082426 Msa0534590:intron 15.0%
!! AAAATTCTAATTTAAATGTG+AGG - chr4_1:10082621-10082640 Msa0534590:intron 15.0%
!!! TTAATTTTTAAACATGTGTA+TGG - chr4_1:10082988-10083007 Msa0534590:intron 15.0%
!!! TAATTTTTAAACATGTGTAT+GGG - chr4_1:10082989-10083008 Msa0534590:intron 15.0%
!!! TTAGTCCATTTTTTAAATTT+TGG + chr4_1:10083204-10083223 None:intergenic 15.0%
!! TAATATAAAACTTAAGGTAA+TGG - chr4_1:10083221-10083240 Msa0534590:CDS 15.0%
!! AGTGTAGAAAATTTAAATGA+TGG - chr4_1:10081707-10081726 Msa0534590:three_prime_UTR 20.0%
!!! ATTTAAATGATGGTGTTTTT+TGG - chr4_1:10081717-10081736 Msa0534590:three_prime_UTR 20.0%
!!! CTGATATTTTGTAAATTAAC+TGG + chr4_1:10082358-10082377 None:intergenic 20.0%
!!! AAAACTGATTTTAAAAATCG+TGG - chr4_1:10082661-10082680 Msa0534590:intron 20.0%
!!! AAAATCTGGAATGTTAAAAT+AGG + chr4_1:10083078-10083097 None:intergenic 20.0%
!!! TATTTTAACATTCCAGATTT+TGG - chr4_1:10083077-10083096 Msa0534590:intron 20.0%
!!! CATCATTTTAAATTCTTCAT+TGG + chr4_1:10083157-10083176 None:intergenic 20.0%
!! ATGGACCAAAATTTAAAAAA+TGG - chr4_1:10083196-10083215 Msa0534590:CDS 20.0%
!!! ATGGACTAATATAAAACTTA+AGG - chr4_1:10083215-10083234 Msa0534590:CDS 20.0%
!! AGTGTAGAAAATTTAAATGA+TGG - chr4_1:10081707-10081726 Msa0534590:three_prime_UTR 20.0%
!!! ATTTAAATGATGGTGTTTTT+TGG - chr4_1:10081717-10081736 Msa0534590:three_prime_UTR 20.0%
!!! CTGATATTTTGTAAATTAAC+TGG + chr4_1:10082358-10082377 None:intergenic 20.0%
!!! AAAACTGATTTTAAAAATCG+TGG - chr4_1:10082661-10082680 Msa0534590:intron 20.0%
!!! AAAATCTGGAATGTTAAAAT+AGG + chr4_1:10083078-10083097 None:intergenic 20.0%
!!! TATTTTAACATTCCAGATTT+TGG - chr4_1:10083077-10083096 Msa0534590:intron 20.0%
!!! CATCATTTTAAATTCTTCAT+TGG + chr4_1:10083157-10083176 None:intergenic 20.0%
!! ATGGACCAAAATTTAAAAAA+TGG - chr4_1:10083196-10083215 Msa0534590:CDS 20.0%
!!! ATGGACTAATATAAAACTTA+AGG - chr4_1:10083215-10083234 Msa0534590:CDS 20.0%
!! AAAAGTCTCAAAGGAAATTT+TGG + chr4_1:10081497-10081516 None:intergenic 25.0%
!!! AAAATTTCCTTTGAGACTTT+TGG - chr4_1:10081496-10081515 Msa0534590:three_prime_UTR 25.0%
!!! AATATGATCATGTTGATTCT+TGG + chr4_1:10081630-10081649 None:intergenic 25.0%
!!! TTGTTTTTGAGTACTTTTGT+TGG - chr4_1:10081875-10081894 Msa0534590:three_prime_UTR 25.0%
!!! TGTTTTTGAGTACTTTTGTT+GGG - chr4_1:10081876-10081895 Msa0534590:three_prime_UTR 25.0%
!!! GAGAGTTATAATTTTGATGA+TGG - chr4_1:10081965-10081984 Msa0534590:three_prime_UTR 25.0%
!!! GTTTGGCTTATATATAGTTT+TGG - chr4_1:10082274-10082293 Msa0534590:intron 25.0%
! AAAATTGACCCTAAATACAT+AGG + chr4_1:10082393-10082412 None:intergenic 25.0%
!!! TATTTAGGGTCAATTTTTCA+TGG - chr4_1:10082396-10082415 Msa0534590:intron 25.0%
!!! GATTTTAAAAATCGTGGATT+TGG - chr4_1:10082667-10082686 Msa0534590:intron 25.0%
! ACACATTATATGTAGAAAAG+TGG + chr4_1:10082824-10082843 None:intergenic 25.0%
!! TTGAATGACAATTTTTCTCT+AGG - chr4_1:10083348-10083367 Msa0534590:CDS 25.0%
! TCTTCACAAAGATTTATTAG+TGG + chr4_1:10083492-10083511 None:intergenic 25.0%
!!! ATTTGTTATTCCAATGTGAA+TGG - chr4_1:10083558-10083577 Msa0534590:CDS 25.0%
!! AAAAGTCTCAAAGGAAATTT+TGG + chr4_1:10081497-10081516 None:intergenic 25.0%
!!! AAAATTTCCTTTGAGACTTT+TGG - chr4_1:10081496-10081515 Msa0534590:three_prime_UTR 25.0%
!!! AATATGATCATGTTGATTCT+TGG + chr4_1:10081630-10081649 None:intergenic 25.0%
!!! TTGTTTTTGAGTACTTTTGT+TGG - chr4_1:10081875-10081894 Msa0534590:three_prime_UTR 25.0%
!!! TGTTTTTGAGTACTTTTGTT+GGG - chr4_1:10081876-10081895 Msa0534590:three_prime_UTR 25.0%
!!! GAGAGTTATAATTTTGATGA+TGG - chr4_1:10081965-10081984 Msa0534590:three_prime_UTR 25.0%
!!! GTTTGGCTTATATATAGTTT+TGG - chr4_1:10082274-10082293 Msa0534590:intron 25.0%
! AAAATTGACCCTAAATACAT+AGG + chr4_1:10082393-10082412 None:intergenic 25.0%
!!! TATTTAGGGTCAATTTTTCA+TGG - chr4_1:10082396-10082415 Msa0534590:intron 25.0%
!!! GATTTTAAAAATCGTGGATT+TGG - chr4_1:10082667-10082686 Msa0534590:intron 25.0%
! ACACATTATATGTAGAAAAG+TGG + chr4_1:10082824-10082843 None:intergenic 25.0%
!! TTGAATGACAATTTTTCTCT+AGG - chr4_1:10083348-10083367 Msa0534590:CDS 25.0%
! TCTTCACAAAGATTTATTAG+TGG + chr4_1:10083492-10083511 None:intergenic 25.0%
!!! ATTTGTTATTCCAATGTGAA+TGG - chr4_1:10083558-10083577 Msa0534590:CDS 25.0%
!!! TCAAAGGAAATTTTGGTTCT+TGG + chr4_1:10081490-10081509 None:intergenic 30.0%
TTCCATTAGGAACTATCATT+AGG - chr4_1:10081597-10081616 Msa0534590:three_prime_UTR 30.0%
TCTTACATAGAATCTCACAA+GGG + chr4_1:10081781-10081800 None:intergenic 30.0%
TTCTTACATAGAATCTCACA+AGG + chr4_1:10081782-10081801 None:intergenic 30.0%
AGATTCTATGTAAGAAGTTG+AGG - chr4_1:10081786-10081805 Msa0534590:three_prime_UTR 30.0%
! TCCATAAAGTACTTTATGTG+TGG - chr4_1:10081830-10081849 Msa0534590:three_prime_UTR 30.0%
! TCCACACATAAAGTACTTTA+TGG + chr4_1:10081834-10081853 None:intergenic 30.0%
!!! GTTTTTGAGTACTTTTGTTG+GGG - chr4_1:10081877-10081896 Msa0534590:three_prime_UTR 30.0%
!! GATGGTGTTTTTGTTAAGAA+AGG - chr4_1:10081983-10082002 Msa0534590:three_prime_UTR 30.0%
!!! TATTTTTTTCTCTCTCAAGG+CGG + chr4_1:10082215-10082234 None:intergenic 30.0%
!!! CTCTATTTTTTTCTCTCTCA+AGG + chr4_1:10082218-10082237 None:intergenic 30.0%
! TTTTCTCCACCTATGTATTT+AGG - chr4_1:10082381-10082400 Msa0534590:intron 30.0%
TTTCTCCACCTATGTATTTA+GGG - chr4_1:10082382-10082401 Msa0534590:intron 30.0%
CACGTCATCATTAATTAAGT+TGG - chr4_1:10082569-10082588 Msa0534590:intron 30.0%
!!! ATTTTGATGATGTGACAAGT+GGG + chr4_1:10082606-10082625 None:intergenic 30.0%
!!! AATTTTGATGATGTGACAAG+TGG + chr4_1:10082607-10082626 None:intergenic 30.0%
! TTTTGTCTAATTCGTGACAT+TGG + chr4_1:10082707-10082726 None:intergenic 30.0%
ACGAATTAGACAAAATAGAG+AGG - chr4_1:10082712-10082731 Msa0534590:intron 30.0%
CGAATTAGACAAAATAGAGA+GGG - chr4_1:10082713-10082732 Msa0534590:intron 30.0%
ATCAATTGAGCTACACTTAT+GGG + chr4_1:10082751-10082770 None:intergenic 30.0%
TATCAATTGAGCTACACTTA+TGG + chr4_1:10082752-10082771 None:intergenic 30.0%
ATGTAGAAAAGTGGAGAATT+CGG + chr4_1:10082815-10082834 None:intergenic 30.0%
! TCCTCTCACTGATATATTTT+TGG - chr4_1:10083131-10083150 Msa0534590:intron 30.0%
!! TTAAATTTTGGTCCATGTCT+TGG + chr4_1:10083192-10083211 None:intergenic 30.0%
TGAAAGAATTCAATCCTTCA+TGG - chr4_1:10083397-10083416 Msa0534590:CDS 30.0%
AAGAAAAAGCTCCTACTTAT+TGG - chr4_1:10083508-10083527 Msa0534590:CDS 30.0%
TCAAAAAGTTTCATTGCTTC+TGG + chr4_1:10083618-10083637 None:intergenic 30.0%
!!! TCAAAGGAAATTTTGGTTCT+TGG + chr4_1:10081490-10081509 None:intergenic 30.0%
TTCCATTAGGAACTATCATT+AGG - chr4_1:10081597-10081616 Msa0534590:three_prime_UTR 30.0%
TCTTACATAGAATCTCACAA+GGG + chr4_1:10081781-10081800 None:intergenic 30.0%
TTCTTACATAGAATCTCACA+AGG + chr4_1:10081782-10081801 None:intergenic 30.0%
AGATTCTATGTAAGAAGTTG+AGG - chr4_1:10081786-10081805 Msa0534590:three_prime_UTR 30.0%
! TCCATAAAGTACTTTATGTG+TGG - chr4_1:10081830-10081849 Msa0534590:three_prime_UTR 30.0%
! TCCACACATAAAGTACTTTA+TGG + chr4_1:10081834-10081853 None:intergenic 30.0%
!!! GTTTTTGAGTACTTTTGTTG+GGG - chr4_1:10081877-10081896 Msa0534590:three_prime_UTR 30.0%
!! GATGGTGTTTTTGTTAAGAA+AGG - chr4_1:10081983-10082002 Msa0534590:three_prime_UTR 30.0%
!!! TATTTTTTTCTCTCTCAAGG+CGG + chr4_1:10082215-10082234 None:intergenic 30.0%
!!! CTCTATTTTTTTCTCTCTCA+AGG + chr4_1:10082218-10082237 None:intergenic 30.0%
! TTTTCTCCACCTATGTATTT+AGG - chr4_1:10082381-10082400 Msa0534590:intron 30.0%
TTTCTCCACCTATGTATTTA+GGG - chr4_1:10082382-10082401 Msa0534590:intron 30.0%
CACGTCATCATTAATTAAGT+TGG - chr4_1:10082569-10082588 Msa0534590:intron 30.0%
!!! ATTTTGATGATGTGACAAGT+GGG + chr4_1:10082606-10082625 None:intergenic 30.0%
!!! AATTTTGATGATGTGACAAG+TGG + chr4_1:10082607-10082626 None:intergenic 30.0%
! TTTTGTCTAATTCGTGACAT+TGG + chr4_1:10082707-10082726 None:intergenic 30.0%
ACGAATTAGACAAAATAGAG+AGG - chr4_1:10082712-10082731 Msa0534590:intron 30.0%
CGAATTAGACAAAATAGAGA+GGG - chr4_1:10082713-10082732 Msa0534590:intron 30.0%
ATCAATTGAGCTACACTTAT+GGG + chr4_1:10082751-10082770 None:intergenic 30.0%
TATCAATTGAGCTACACTTA+TGG + chr4_1:10082752-10082771 None:intergenic 30.0%
ATGTAGAAAAGTGGAGAATT+CGG + chr4_1:10082815-10082834 None:intergenic 30.0%
! TCCTCTCACTGATATATTTT+TGG - chr4_1:10083131-10083150 Msa0534590:intron 30.0%
!! TTAAATTTTGGTCCATGTCT+TGG + chr4_1:10083192-10083211 None:intergenic 30.0%
TGAAAGAATTCAATCCTTCA+TGG - chr4_1:10083397-10083416 Msa0534590:CDS 30.0%
AAGAAAAAGCTCCTACTTAT+TGG - chr4_1:10083508-10083527 Msa0534590:CDS 30.0%
TCAAAAAGTTTCATTGCTTC+TGG + chr4_1:10083618-10083637 None:intergenic 30.0%
!!! AGGAAATTTTGGTTCTTGGT+TGG + chr4_1:10081486-10081505 None:intergenic 35.0%
TTGTCAACCAAAAGTCTCAA+AGG + chr4_1:10081506-10081525 None:intergenic 35.0%
TTGATTCAGCTACAACTACA+CGG + chr4_1:10081538-10081557 None:intergenic 35.0%
! AGTTTTCTCACACTTCCATT+AGG - chr4_1:10081584-10081603 Msa0534590:three_prime_UTR 35.0%
AGCCTAATGATAGTTCCTAA+TGG + chr4_1:10081602-10081621 None:intergenic 35.0%
ATGTGTGGAAAATGTTGTAG+AGG - chr4_1:10081845-10081864 Msa0534590:three_prime_UTR 35.0%
TGTGTGGAAAATGTTGTAGA+GGG - chr4_1:10081846-10081865 Msa0534590:three_prime_UTR 35.0%
TTGTTCTTGTGGGAAATTGA+TGG - chr4_1:10081907-10081926 Msa0534590:three_prime_UTR 35.0%
GACAAAGAAATGAAGTTGCA+TGG - chr4_1:10081929-10081948 Msa0534590:three_prime_UTR 35.0%
! ATGAAGTTGCATGGAGATTT+TGG - chr4_1:10081938-10081957 Msa0534590:three_prime_UTR 35.0%
CTCTTTCAATCCAACATTCA+AGG + chr4_1:10082122-10082141 None:intergenic 35.0%
CTTGAATGTTGGATTGAAAG+AGG - chr4_1:10082120-10082139 Msa0534590:intron 35.0%
ATTGACCCTAAATACATAGG+TGG + chr4_1:10082390-10082409 None:intergenic 35.0%
! GATGACGTGATATTTCTACA+CGG + chr4_1:10082558-10082577 None:intergenic 35.0%
TTAGACAAAATAGAGAGGGA+TGG - chr4_1:10082717-10082736 Msa0534590:intron 35.0%
! AGCTCAATTGATAGTTACCA+AGG - chr4_1:10082759-10082778 Msa0534590:intron 35.0%
ACTTCTACACGTAAAATCCT+TGG + chr4_1:10082779-10082798 None:intergenic 35.0%
! AGGATTTTACGTGTAGAAGT+TGG - chr4_1:10082779-10082798 Msa0534590:intron 35.0%
TGTAGAAAAGTGGAGAATTC+GGG + chr4_1:10082814-10082833 None:intergenic 35.0%
GCCAAAAATATATCAGTGAG+AGG + chr4_1:10083135-10083154 None:intergenic 35.0%
ATACTATATGCTGAAGCTGA+GGG - chr4_1:10083264-10083283 Msa0534590:CDS 35.0%
ACACCAATTGGATCTATTCT+AGG - chr4_1:10083321-10083340 Msa0534590:CDS 35.0%
TGTCCTAGAATAGATCCAAT+TGG + chr4_1:10083327-10083346 None:intergenic 35.0%
!!! CAATTTTTCTCTAGGATGTG+TGG - chr4_1:10083356-10083375 Msa0534590:CDS 35.0%
TCAATCCTTCATGGTTCATA+AGG - chr4_1:10083406-10083425 Msa0534590:CDS 35.0%
AAAGCTCCTACTTATTGGTA+TGG - chr4_1:10083513-10083532 Msa0534590:CDS 35.0%
CCATTACCATACCAATAAGT+AGG + chr4_1:10083522-10083541 None:intergenic 35.0%
CCTACTTATTGGTATGGTAA+TGG - chr4_1:10083519-10083538 Msa0534590:CDS 35.0%
TGATATCACTCCATTCACAT+TGG + chr4_1:10083571-10083590 None:intergenic 35.0%
TTTGATCCAAGATCACCTTA+TGG - chr4_1:10083633-10083652 Msa0534590:CDS 35.0%
GCCATCACTATTTATTGTGT+GGG - chr4_1:10083689-10083708 Msa0534590:CDS 35.0%
TCCCACACAATAAATAGTGA+TGG + chr4_1:10083693-10083712 None:intergenic 35.0%
!!! AGGAAATTTTGGTTCTTGGT+TGG + chr4_1:10081486-10081505 None:intergenic 35.0%
TTGTCAACCAAAAGTCTCAA+AGG + chr4_1:10081506-10081525 None:intergenic 35.0%
TTGATTCAGCTACAACTACA+CGG + chr4_1:10081538-10081557 None:intergenic 35.0%
! AGTTTTCTCACACTTCCATT+AGG - chr4_1:10081584-10081603 Msa0534590:three_prime_UTR 35.0%
AGCCTAATGATAGTTCCTAA+TGG + chr4_1:10081602-10081621 None:intergenic 35.0%
ATGTGTGGAAAATGTTGTAG+AGG - chr4_1:10081845-10081864 Msa0534590:three_prime_UTR 35.0%
TGTGTGGAAAATGTTGTAGA+GGG - chr4_1:10081846-10081865 Msa0534590:three_prime_UTR 35.0%
TTGTTCTTGTGGGAAATTGA+TGG - chr4_1:10081907-10081926 Msa0534590:three_prime_UTR 35.0%
GACAAAGAAATGAAGTTGCA+TGG - chr4_1:10081929-10081948 Msa0534590:three_prime_UTR 35.0%
! ATGAAGTTGCATGGAGATTT+TGG - chr4_1:10081938-10081957 Msa0534590:three_prime_UTR 35.0%
CTCTTTCAATCCAACATTCA+AGG + chr4_1:10082122-10082141 None:intergenic 35.0%
CTTGAATGTTGGATTGAAAG+AGG - chr4_1:10082120-10082139 Msa0534590:intron 35.0%
ATTGACCCTAAATACATAGG+TGG + chr4_1:10082390-10082409 None:intergenic 35.0%
! GATGACGTGATATTTCTACA+CGG + chr4_1:10082558-10082577 None:intergenic 35.0%
TTAGACAAAATAGAGAGGGA+TGG - chr4_1:10082717-10082736 Msa0534590:intron 35.0%
! AGCTCAATTGATAGTTACCA+AGG - chr4_1:10082759-10082778 Msa0534590:intron 35.0%
ACTTCTACACGTAAAATCCT+TGG + chr4_1:10082779-10082798 None:intergenic 35.0%
! AGGATTTTACGTGTAGAAGT+TGG - chr4_1:10082779-10082798 Msa0534590:intron 35.0%
TGTAGAAAAGTGGAGAATTC+GGG + chr4_1:10082814-10082833 None:intergenic 35.0%
GCCAAAAATATATCAGTGAG+AGG + chr4_1:10083135-10083154 None:intergenic 35.0%
ATACTATATGCTGAAGCTGA+GGG - chr4_1:10083264-10083283 Msa0534590:CDS 35.0%
ACACCAATTGGATCTATTCT+AGG - chr4_1:10083321-10083340 Msa0534590:CDS 35.0%
TGTCCTAGAATAGATCCAAT+TGG + chr4_1:10083327-10083346 None:intergenic 35.0%
!!! CAATTTTTCTCTAGGATGTG+TGG - chr4_1:10083356-10083375 Msa0534590:CDS 35.0%
TCAATCCTTCATGGTTCATA+AGG - chr4_1:10083406-10083425 Msa0534590:CDS 35.0%
AAAGCTCCTACTTATTGGTA+TGG - chr4_1:10083513-10083532 Msa0534590:CDS 35.0%
CCATTACCATACCAATAAGT+AGG + chr4_1:10083522-10083541 None:intergenic 35.0%
CCTACTTATTGGTATGGTAA+TGG - chr4_1:10083519-10083538 Msa0534590:CDS 35.0%
TGATATCACTCCATTCACAT+TGG + chr4_1:10083571-10083590 None:intergenic 35.0%
TTTGATCCAAGATCACCTTA+TGG - chr4_1:10083633-10083652 Msa0534590:CDS 35.0%
GCCATCACTATTTATTGTGT+GGG - chr4_1:10083689-10083708 Msa0534590:CDS 35.0%
TCCCACACAATAAATAGTGA+TGG + chr4_1:10083693-10083712 None:intergenic 35.0%
GATCAACCTGAAGAGATACT+TGG - chr4_1:10081662-10081681 Msa0534590:three_prime_UTR 40.0%
ATGCAACCAAGTATCTCTTC+AGG + chr4_1:10081671-10081690 None:intergenic 40.0%
!! AAAGTGTTGCAAAACTCTCC+TGG - chr4_1:10082034-10082053 Msa0534590:three_prime_UTR 40.0%
AGTTGCTGAACTGAATTACC+AGG + chr4_1:10082055-10082074 None:intergenic 40.0%
GTTCAGCAACTCATTCAACT+TGG - chr4_1:10082064-10082083 Msa0534590:CDS 40.0%
ACACAAGTGTCCTTGAATGT+TGG - chr4_1:10082109-10082128 Msa0534590:intron 40.0%
ATAGAGAGAGCGAGAATGTT+TGG - chr4_1:10082257-10082276 Msa0534590:intron 40.0%
GTGGATTTGGAAAAAGCAGA+TGG - chr4_1:10082680-10082699 Msa0534590:intron 40.0%
GTAGAAAAGTGGAGAATTCG+GGG + chr4_1:10082813-10082832 None:intergenic 40.0%
!! GTTTTAGTCTCTCTCTTGGT+TGG + chr4_1:10082873-10082892 None:intergenic 40.0%
!! TGCAGTTTTAGTCTCTCTCT+TGG + chr4_1:10082877-10082896 None:intergenic 40.0%
GCTTTAGCAAGTCCAAAATC+TGG + chr4_1:10083092-10083111 None:intergenic 40.0%
TATATCAGTGAGAGGAGACT+TGG + chr4_1:10083127-10083146 None:intergenic 40.0%
GATACTATATGCTGAAGCTG+AGG - chr4_1:10083263-10083282 Msa0534590:CDS 40.0%
AGTTTCCTCACAACACCAAT+TGG - chr4_1:10083309-10083328 Msa0534590:CDS 40.0%
!! TAGATCCAATTGGTGTTGTG+AGG + chr4_1:10083317-10083336 None:intergenic 40.0%
! AAAGGCCTTATGAACCATGA+AGG + chr4_1:10083414-10083433 None:intergenic 40.0%
TCATGGTTCATAAGGCCTTT+AGG - chr4_1:10083414-10083433 Msa0534590:CDS 40.0%
TTTGGTAAGGGGTTACCTAA+AGG + chr4_1:10083432-10083451 None:intergenic 40.0%
TAACCCCTTACCAAATCCAA+AGG - chr4_1:10083437-10083456 Msa0534590:CDS 40.0%
TGCTTCATGCAACCAAATTG+AGG + chr4_1:10083468-10083487 None:intergenic 40.0%
ATTGTGCCATAAGGTGATCT+TGG + chr4_1:10083642-10083661 None:intergenic 40.0%
GCAGATTCAATTGTGCCATA+AGG + chr4_1:10083651-10083670 None:intergenic 40.0%
TGGCACAATTGAATCTGCTT+TGG - chr4_1:10083653-10083672 Msa0534590:CDS 40.0%
GGCACAATTGAATCTGCTTT+GGG - chr4_1:10083654-10083673 Msa0534590:CDS 40.0%
GGCCATCACTATTTATTGTG+TGG - chr4_1:10083688-10083707 Msa0534590:CDS 40.0%
GATCAACCTGAAGAGATACT+TGG - chr4_1:10081662-10081681 Msa0534590:three_prime_UTR 40.0%
ATGCAACCAAGTATCTCTTC+AGG + chr4_1:10081671-10081690 None:intergenic 40.0%
!! AAAGTGTTGCAAAACTCTCC+TGG - chr4_1:10082034-10082053 Msa0534590:three_prime_UTR 40.0%
AGTTGCTGAACTGAATTACC+AGG + chr4_1:10082055-10082074 None:intergenic 40.0%
GTTCAGCAACTCATTCAACT+TGG - chr4_1:10082064-10082083 Msa0534590:CDS 40.0%
ACACAAGTGTCCTTGAATGT+TGG - chr4_1:10082109-10082128 Msa0534590:intron 40.0%
ATAGAGAGAGCGAGAATGTT+TGG - chr4_1:10082257-10082276 Msa0534590:intron 40.0%
GTGGATTTGGAAAAAGCAGA+TGG - chr4_1:10082680-10082699 Msa0534590:intron 40.0%
GTAGAAAAGTGGAGAATTCG+GGG + chr4_1:10082813-10082832 None:intergenic 40.0%
!! GTTTTAGTCTCTCTCTTGGT+TGG + chr4_1:10082873-10082892 None:intergenic 40.0%
!! TGCAGTTTTAGTCTCTCTCT+TGG + chr4_1:10082877-10082896 None:intergenic 40.0%
GCTTTAGCAAGTCCAAAATC+TGG + chr4_1:10083092-10083111 None:intergenic 40.0%
TATATCAGTGAGAGGAGACT+TGG + chr4_1:10083127-10083146 None:intergenic 40.0%
GATACTATATGCTGAAGCTG+AGG - chr4_1:10083263-10083282 Msa0534590:CDS 40.0%
AGTTTCCTCACAACACCAAT+TGG - chr4_1:10083309-10083328 Msa0534590:CDS 40.0%
!! TAGATCCAATTGGTGTTGTG+AGG + chr4_1:10083317-10083336 None:intergenic 40.0%
! AAAGGCCTTATGAACCATGA+AGG + chr4_1:10083414-10083433 None:intergenic 40.0%
TCATGGTTCATAAGGCCTTT+AGG - chr4_1:10083414-10083433 Msa0534590:CDS 40.0%
TTTGGTAAGGGGTTACCTAA+AGG + chr4_1:10083432-10083451 None:intergenic 40.0%
TAACCCCTTACCAAATCCAA+AGG - chr4_1:10083437-10083456 Msa0534590:CDS 40.0%
TGCTTCATGCAACCAAATTG+AGG + chr4_1:10083468-10083487 None:intergenic 40.0%
ATTGTGCCATAAGGTGATCT+TGG + chr4_1:10083642-10083661 None:intergenic 40.0%
GCAGATTCAATTGTGCCATA+AGG + chr4_1:10083651-10083670 None:intergenic 40.0%
TGGCACAATTGAATCTGCTT+TGG - chr4_1:10083653-10083672 Msa0534590:CDS 40.0%
GGCACAATTGAATCTGCTTT+GGG - chr4_1:10083654-10083673 Msa0534590:CDS 40.0%
GGCCATCACTATTTATTGTG+TGG - chr4_1:10083688-10083707 Msa0534590:CDS 40.0%
! GGGCAAGTTGTTGTTCTTGT+GGG - chr4_1:10081897-10081916 Msa0534590:three_prime_UTR 45.0%
TCAACATTCTCGCCAAGACA+TGG - chr4_1:10083177-10083196 Msa0534590:CDS 45.0%
! CCACCTTTGGATTTGGTAAG+GGG + chr4_1:10083443-10083462 None:intergenic 45.0%
! GCCACCTTTGGATTTGGTAA+GGG + chr4_1:10083444-10083463 None:intergenic 45.0%
! AGCCACCTTTGGATTTGGTA+AGG + chr4_1:10083445-10083464 None:intergenic 45.0%
!! CTGCTTTGGGATTTGTGAAG+AGG - chr4_1:10083667-10083686 Msa0534590:CDS 45.0%
! GGGCAAGTTGTTGTTCTTGT+GGG - chr4_1:10081897-10081916 Msa0534590:three_prime_UTR 45.0%
TCAACATTCTCGCCAAGACA+TGG - chr4_1:10083177-10083196 Msa0534590:CDS 45.0%
! CCACCTTTGGATTTGGTAAG+GGG + chr4_1:10083443-10083462 None:intergenic 45.0%
! GCCACCTTTGGATTTGGTAA+GGG + chr4_1:10083444-10083463 None:intergenic 45.0%
! AGCCACCTTTGGATTTGGTA+AGG + chr4_1:10083445-10083464 None:intergenic 45.0%
!! CTGCTTTGGGATTTGTGAAG+AGG - chr4_1:10083667-10083686 Msa0534590:CDS 45.0%
AGAATCTCACAAGGGTTGCG+CGG + chr4_1:10081773-10081792 None:intergenic 50.0%
! GGGGCAAGTTGTTGTTCTTG+TGG - chr4_1:10081896-10081915 Msa0534590:three_prime_UTR 50.0%
CCCCTTACCAAATCCAAAGG+TGG - chr4_1:10083440-10083459 Msa0534590:CDS 50.0%
TGAGGAGCCACCTTTGGATT+TGG + chr4_1:10083450-10083469 None:intergenic 50.0%
CCAAATTGAGGAGCCACCTT+TGG + chr4_1:10083456-10083475 None:intergenic 50.0%
CCAAAGGTGGCTCCTCAATT+TGG - chr4_1:10083453-10083472 Msa0534590:CDS 50.0%
AGAATCTCACAAGGGTTGCG+CGG + chr4_1:10081773-10081792 None:intergenic 50.0%
! GGGGCAAGTTGTTGTTCTTG+TGG - chr4_1:10081896-10081915 Msa0534590:three_prime_UTR 50.0%
CCCCTTACCAAATCCAAAGG+TGG - chr4_1:10083440-10083459 Msa0534590:CDS 50.0%
TGAGGAGCCACCTTTGGATT+TGG + chr4_1:10083450-10083469 None:intergenic 50.0%
CCAAATTGAGGAGCCACCTT+TGG + chr4_1:10083456-10083475 None:intergenic 50.0%
CCAAAGGTGGCTCCTCAATT+TGG - chr4_1:10083453-10083472 Msa0534590:CDS 50.0%
TCAAGGCGGCTAGTGGTGTT+CGG + chr4_1:10082201-10082220 None:intergenic 55.0%
TTCTCTCTCAAGGCGGCTAG+TGG + chr4_1:10082208-10082227 None:intergenic 55.0%
TCAAGGCGGCTAGTGGTGTT+CGG + chr4_1:10082201-10082220 None:intergenic 55.0%
TTCTCTCTCAAGGCGGCTAG+TGG + chr4_1:10082208-10082227 None:intergenic 55.0%
CAAGGCGGCTAGTGGTGTTC+GGG + chr4_1:10082200-10082219 None:intergenic 60.0%
CAAGGCGGCTAGTGGTGTTC+GGG + chr4_1:10082200-10082219 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 10081476 10083720 10081476 ID=Msa0534590;Name=Msa0534590
chr4_1 mRNA 10081476 10083720 10081476 ID=Msa0534590-mRNA-1;Parent=Msa0534590;Name=Msa0534590-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0|0.5|1|1|1|2|578|209
chr4_1 exon 10081476 10082103 10081476 ID=Msa0534590-mRNA-1:exon:3242;Parent=Msa0534590-mRNA-1
chr4_1 exon 10083141 10083720 10083141 ID=Msa0534590-mRNA-1:exon:3241;Parent=Msa0534590-mRNA-1
chr4_1 CDS 10083141 10083720 10083141 ID=Msa0534590-mRNA-1:cds;Parent=Msa0534590-mRNA-1
chr4_1 CDS 10082054 10082103 10082054 ID=Msa0534590-mRNA-1:cds;Parent=Msa0534590-mRNA-1
chr4_1 three_prime_UTR 10081476 10082053 10081476 ID=Msa0534590-mRNA-1:three_prime_utr;Parent=Msa0534590-mRNA-1
Gene Sequence

>Msa0534590

ATGGCTTCCAACCAAGAACCAAAATTTCCTTTGAGACTTTTGGTTGACAAAGAAAAAAACCGTGTAGTTGTAGCTGAATCAAAGAGTGATTTAATAGACATTTTGTTTAGTTTTCTCACACTTCCATTAGGAACTATCATTAGGCTAGTTGCCAAGAATCAACATGATCATATTCATGAAATTAATGATCAACCTGAAGAGATACTTGGTTGCATCAACAATCTTTACAAGAGTGTAGAAAATTTAAATGATGGTGTTTTTTGGAACAATATTTGCAAGACAATGTTGCTTTATCCGCGCAACCCTTGTGAGATTCTATGTAAGAAGTTGAGGTTGAATTTAGATGAATCAGAGTCCATAAAGTACTTTATGTGTGGAAAATGTTGTAGAGGGAGTGATTTGTTTTTGAGTACTTTTGTTGGGGCAAGTTGTTGTTCTTGTGGGAAATTGATGGACAAAGAAATGAAGTTGCATGGAGATTTTGGTGAAGAGAGTTATAATTTTGATGATGGTGTTTTTGTTAAGAAAGGAAGTTTGTATTTGATTTTTGATGATTTGAAAGTGTTGCAAAACTCTCCTGATTTTGGACTTGCTAAAGCAATCATTAATCTCCAAGTCTCCTCTCACTGA

Protein sequence

>Msa0534590

MASNQEPKFPLRLLVDKEKNRVVVAESKSDLIDILFSFLTLPLGTIIRLVAKNQHDHIHEINDQPEEILGCINNLYKSVENLNDGVFWNNICKTMLLYPRNPCEILCKKLRLNLDESESIKYFMCGKCCRGSDLFLSTFVGASCCSCGKLMDKEMKLHGDFGEESYNFDDGVFVKKGSLYLIFDDLKVLQNSPDFGLAKAIINLQVSSH*