Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0251240 | XP_013465033.1 | 84.494 | 445 | 17 | 3 | 1 | 394 | 58 | 501 | 0.0 | 719 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0251240 | sp|Q8S8I1|QWRF3_ARATH | 34.324 | 370 | 153 | 12 | 93 | 374 | 101 | 468 | 1.11e-51 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0251240 | A0A072VC90 | 84.494 | 445 | 17 | 3 | 1 | 394 | 58 | 501 | 0.0 | 719 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0251240 | 0.824060 | 9.903081e-54 | -8.615850e-47 |
| Msa0004880 | Msa0251240 | 0.833171 | 6.214644e-56 | -8.615850e-47 |
| Msa0017510 | Msa0251240 | 0.816772 | 4.654081e-52 | -8.615850e-47 |
| Msa0022640 | Msa0251240 | 0.820691 | 5.999832e-53 | -8.615850e-47 |
| Msa0029910 | Msa0251240 | 0.822195 | 2.697154e-53 | -8.615850e-47 |
| Msa0036430 | Msa0251240 | 0.808973 | 2.379757e-50 | -8.615850e-47 |
| Msa0044100 | Msa0251240 | 0.819996 | 8.661799e-53 | -8.615850e-47 |
| Msa0051790 | Msa0251240 | 0.817204 | 3.722937e-52 | -8.615850e-47 |
| Msa0078430 | Msa0251240 | 0.821015 | 5.053633e-53 | -8.615850e-47 |
| Msa0084500 | Msa0251240 | 0.828651 | 7.983695e-55 | -8.615850e-47 |
| Msa0095540 | Msa0251240 | 0.801963 | 7.024620e-49 | -8.615850e-47 |
| Msa0118400 | Msa0251240 | 0.818720 | 1.691510e-52 | -8.615850e-47 |
| Msa0130570 | Msa0251240 | 0.823171 | 1.599016e-53 | -8.615850e-47 |
| Msa0141100 | Msa0251240 | 0.834166 | 3.507546e-56 | -8.615850e-47 |
| Msa0153420 | Msa0251240 | 0.829182 | 5.939795e-55 | -8.615850e-47 |
| Msa0157290 | Msa0251240 | 0.816687 | 4.864484e-52 | -8.615850e-47 |
| Msa0161680 | Msa0251240 | 0.816257 | 6.069144e-52 | -8.615850e-47 |
| Msa0173090 | Msa0251240 | 0.806980 | 6.320307e-50 | -8.615850e-47 |
| Msa0173990 | Msa0251240 | 0.812289 | 4.569149e-51 | -8.615850e-47 |
| Msa0176470 | Msa0251240 | 0.806997 | 6.268695e-50 | -8.615850e-47 |
| Msa0183750 | Msa0251240 | 0.817448 | 3.280005e-52 | -8.615850e-47 |
| Msa0191040 | Msa0251240 | 0.887935 | 9.210751e-73 | -8.615850e-47 |
| Msa0206800 | Msa0251240 | 0.833452 | 5.290519e-56 | -8.615850e-47 |
| Msa0220300 | Msa0251240 | 0.874109 | 8.728496e-68 | -8.615850e-47 |
| Msa0225600 | Msa0251240 | 0.819089 | 1.394840e-52 | -8.615850e-47 |
| Msa0233340 | Msa0251240 | 0.888352 | 6.370653e-73 | -8.615850e-47 |
| Msa0236110 | Msa0251240 | 0.809893 | 1.510334e-50 | -8.615850e-47 |
| Msa0236440 | Msa0251240 | 0.809985 | 1.443355e-50 | -8.615850e-47 |
| Msa0251240 | Msa0266450 | 0.830025 | 3.705079e-55 | -8.615850e-47 |
| Msa0251240 | Msa0282210 | 0.808422 | 3.122142e-50 | -8.615850e-47 |
| Msa0251240 | Msa0288190 | 0.824206 | 9.149803e-54 | -8.615850e-47 |
| Msa0251240 | Msa0288200 | 0.821684 | 3.542253e-53 | -8.615850e-47 |
| Msa0251240 | Msa0290010 | 0.802763 | 4.807575e-49 | -8.615850e-47 |
| Msa0251240 | Msa0299430 | 0.806891 | 6.598724e-50 | -8.615850e-47 |
| Msa0251240 | Msa0301200 | 0.807777 | 4.281596e-50 | -8.615850e-47 |
| Msa0251240 | Msa0311690 | 0.863771 | 1.961676e-64 | -8.615850e-47 |
| Msa0251240 | Msa0314630 | 0.806716 | 7.187923e-50 | -8.615850e-47 |
| Msa0251240 | Msa0315250 | 0.845614 | 3.638367e-59 | -8.615850e-47 |
| Msa0251240 | Msa0322830 | 0.813937 | 1.987967e-51 | -8.615850e-47 |
| Msa0251240 | Msa0326540 | 0.825569 | 4.364122e-54 | -8.615850e-47 |
| Msa0251240 | Msa0334500 | 0.815819 | 7.605584e-52 | -8.615850e-47 |
| Msa0251240 | Msa0373960 | 0.808362 | 3.214995e-50 | -8.615850e-47 |
| Msa0251240 | Msa0374850 | 0.836900 | 7.136510e-57 | -8.615850e-47 |
| Msa0251240 | Msa0375090 | 0.836537 | 8.832520e-57 | -8.615850e-47 |
| Msa0251240 | Msa0436500 | 0.821545 | 3.814503e-53 | -8.615850e-47 |
| Msa0251240 | Msa0470340 | 0.848162 | 7.304753e-60 | -8.615850e-47 |
| Msa0251240 | Msa0470860 | 0.818915 | 1.527328e-52 | -8.615850e-47 |
| Msa0251240 | Msa0480950 | 0.812971 | 3.240280e-51 | -8.615850e-47 |
| Msa0251240 | Msa0481110 | 0.840414 | 8.820377e-58 | -8.615850e-47 |
| Msa0251240 | Msa0484780 | 0.821950 | 3.074560e-53 | -8.615850e-47 |
| Msa0251240 | Msa0513350 | 0.829176 | 5.959032e-55 | -8.615850e-47 |
| Msa0251240 | Msa0520510 | 0.825265 | 5.149577e-54 | -8.615850e-47 |
| Msa0251240 | Msa0531430 | 0.878638 | 2.388015e-69 | -8.615850e-47 |
| Msa0251240 | Msa0534570 | 0.860700 | 1.719942e-63 | -8.615850e-47 |
| Msa0251240 | Msa0534590 | 0.905529 | 3.898787e-80 | -8.615850e-47 |
| Msa0251240 | Msa0565600 | 0.817518 | 3.162802e-52 | -8.615850e-47 |
| Msa0251240 | Msa0590800 | 0.880868 | 3.848103e-70 | -8.615850e-47 |
| Msa0251240 | Msa0611380 | 0.878438 | 2.807645e-69 | -8.615850e-47 |
| Msa0251240 | Msa0618290 | 0.823305 | 1.487541e-53 | -8.615850e-47 |
| Msa0251240 | Msa0619990 | 0.819034 | 1.435597e-52 | -8.615850e-47 |
| Msa0251240 | Msa0628640 | 0.838193 | 3.325811e-57 | -8.615850e-47 |
| Msa0251240 | Msa0631120 | 0.882552 | 9.463805e-71 | -8.615850e-47 |
| Msa0251240 | Msa0657970 | 0.818084 | 2.357645e-52 | -8.615850e-47 |
| Msa0251240 | Msa0666030 | 0.876202 | 1.684321e-68 | -8.615850e-47 |
| Msa0251240 | Msa0669340 | 0.873743 | 1.160413e-67 | -8.615850e-47 |
| Msa0251240 | Msa0684500 | 0.810729 | 9.973722e-51 | -8.615850e-47 |
| Msa0251240 | Msa0701970 | 0.802580 | 5.243429e-49 | -8.615850e-47 |
| Msa0251240 | Msa0706420 | 0.803600 | 3.225983e-49 | -8.615850e-47 |
| Msa0251240 | Msa0716450 | 0.854457 | 1.215007e-61 | -8.615850e-47 |
| Msa0251240 | Msa0717260 | 0.859552 | 3.821217e-63 | -8.615850e-47 |
| Msa0251240 | Msa0717670 | 0.810849 | 9.394834e-51 | -8.615850e-47 |
| Msa0251240 | Msa0742180 | 0.804702 | 1.902959e-49 | -8.615850e-47 |
| Msa0251240 | Msa0758320 | 0.854333 | 1.319990e-61 | -8.615850e-47 |
| Msa0251240 | Msa0786040 | 0.819785 | 9.679709e-53 | -8.615850e-47 |
| Msa0251240 | Msa0799030 | 0.832025 | 1.195799e-55 | -8.615850e-47 |
| Msa0251240 | Msa0799700 | 0.810657 | 1.033754e-50 | -8.615850e-47 |
| Msa0251240 | Msa0810020 | 0.806594 | 7.625195e-50 | -8.615850e-47 |
| Msa0251240 | Msa0812820 | 0.826543 | 2.560355e-54 | -8.615850e-47 |
| Msa0251240 | Msa0822990 | 0.800822 | 1.203331e-48 | -8.615850e-47 |
| Msa0251240 | Msa0823400 | 0.809881 | 1.519799e-50 | -8.615850e-47 |
| Msa0251240 | Msa0837440 | 0.841872 | 3.651222e-58 | -8.615850e-47 |
| Msa0251240 | Msa0837980 | 0.849743 | 2.658127e-60 | -8.615850e-47 |
| Msa0251240 | Msa0853320 | 0.848479 | 5.969790e-60 | -8.615850e-47 |
| Msa0251240 | Msa0862310 | 0.806734 | 7.124301e-50 | -8.615850e-47 |
| Msa0251240 | Msa0863910 | 0.804261 | 2.351438e-49 | -8.615850e-47 |
| Msa0251240 | Msa0870690 | 0.803040 | 4.214008e-49 | -8.615850e-47 |
| Msa0251240 | Msa0880140 | 0.819397 | 1.186806e-52 | -8.615850e-47 |
| Msa0251240 | Msa0880710 | 0.845250 | 4.564960e-59 | -8.615850e-47 |
| Msa0251240 | Msa0885060 | 0.826939 | 2.059722e-54 | -8.615850e-47 |
| Msa0251240 | Msa0979510 | 0.838533 | 2.717264e-57 | -8.615850e-47 |
| Msa0251240 | Msa0999340 | 0.807154 | 5.807086e-50 | -8.615850e-47 |
| Msa0251240 | Msa0999350 | 0.808685 | 2.742687e-50 | -8.615850e-47 |
| Msa0251240 | Msa0999400 | 0.803930 | 2.755369e-49 | -8.615850e-47 |
| Msa0251240 | Msa1002620 | 0.834458 | 2.962941e-56 | -8.615850e-47 |
| Msa0251240 | Msa1010110 | 0.847394 | 1.189112e-59 | -8.615850e-47 |
| Msa0251240 | Msa1020720 | 0.826459 | 2.681222e-54 | -8.615850e-47 |
| Msa0251240 | Msa1033560 | 0.825961 | 3.523013e-54 | -8.615850e-47 |
| Msa0251240 | Msa1034680 | 0.833984 | 3.896102e-56 | -8.615850e-47 |
| Msa0251240 | Msa1073340 | 0.825038 | 5.828762e-54 | -8.615850e-47 |
| Msa0251240 | Msa1073350 | 0.804516 | 2.081178e-49 | -8.615850e-47 |
| Msa0251240 | Msa1082500 | 0.800966 | 1.124716e-48 | -8.615850e-47 |
| Msa0251240 | Msa1113850 | 0.833777 | 4.388134e-56 | -8.615850e-47 |
| Msa0251240 | Msa1139410 | 0.809591 | 1.754230e-50 | -8.615850e-47 |
| Msa0251240 | Msa1160400 | 0.827264 | 1.721880e-54 | -8.615850e-47 |
| Msa0251240 | Msa1172450 | 0.800727 | 1.258184e-48 | -8.615850e-47 |
| Msa0251240 | Msa1172670 | 0.819390 | 1.190833e-52 | -8.615850e-47 |
| Msa0251240 | Msa1179460 | 0.804524 | 2.072975e-49 | -8.615850e-47 |
| Msa0251240 | Msa1197590 | 0.814843 | 1.252901e-51 | -8.615850e-47 |
| Msa0251240 | Msa1203000 | 0.837524 | 4.939966e-57 | -8.615850e-47 |
| Msa0251240 | Msa1211550 | 0.813586 | 2.374899e-51 | -8.615850e-47 |
| Msa0251240 | Msa1217940 | 0.847218 | 1.329246e-59 | -8.615850e-47 |
| Msa0251240 | Msa1218480 | 0.864829 | 9.176778e-65 | -8.615850e-47 |
| Msa0251240 | Msa1219260 | 0.831850 | 1.321063e-55 | -8.615850e-47 |
| Msa0251240 | Msa1254700 | 0.812148 | 4.905779e-51 | -8.615850e-47 |
| Msa0251240 | Msa1255280 | 0.814557 | 1.449789e-51 | -8.615850e-47 |
| Msa0251240 | Msa1258050 | 0.817260 | 3.616429e-52 | -8.615850e-47 |
| Msa0251240 | Msa1266960 | 0.833587 | 4.894074e-56 | -8.615850e-47 |
| Msa0251240 | Msa1289280 | 0.809681 | 1.677657e-50 | -8.615850e-47 |
| Msa0251240 | Msa1291870 | 0.803344 | 3.646030e-49 | -8.615850e-47 |
| Msa0251240 | Msa1339940 | 0.806845 | 6.748455e-50 | -8.615850e-47 |
| Msa0251240 | Msa1342430 | 0.802939 | 4.422359e-49 | -8.615850e-47 |
| Msa0251240 | Msa1345420 | 0.830510 | 2.819460e-55 | -8.615850e-47 |
| Msa0251240 | Msa1369700 | 0.800671 | 1.292184e-48 | -8.615850e-47 |
| Msa0251240 | Msa1397250 | 0.822190 | 2.703852e-53 | -8.615850e-47 |
| Msa0251240 | Msa1399560 | 0.834219 | 3.400622e-56 | -8.615850e-47 |
| Msa0251240 | Msa1401150 | 0.820149 | 7.989116e-53 | -8.615850e-47 |
| Msa0251240 | Msa1420060 | 0.802297 | 5.998644e-49 | -8.615850e-47 |
| Msa0251240 | Msa1437190 | 0.824204 | 9.161947e-54 | -8.615850e-47 |
| Msa0251240 | Msa1440340 | 0.848967 | 4.372430e-60 | -8.615850e-47 |
| Msa0251240 | Msa1443840 | 0.826328 | 2.882244e-54 | -8.615850e-47 |
| Msa0251240 | Msa1452060 | 0.805326 | 1.409247e-49 | -8.615850e-47 |
| Msa0251240 | Msa1460240 | 0.810322 | 1.220805e-50 | -8.615850e-47 |
| Msa0251240 | Msa1460380 | 0.818756 | 1.660093e-52 | -8.615850e-47 |
| Msa0251240 | Msa1460890 | 0.810155 | 1.326804e-50 | -8.615850e-47 |
| Msa0251240 | Msa1463670 | 0.814996 | 1.159135e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0251240 | MtrunA17_Chr2g0323821 | 84.494 | 445 | 17 | 3 | 1 | 394 | 58 | 501 | 0.0 | 719 |
| Msa0251240 | MtrunA17_Chr3g0079101 | 25.681 | 257 | 117 | 6 | 185 | 375 | 119 | 367 | 1.79e-15 | 77.4 |
| Msa0251240 | MtrunA17_Chr1g0152681 | 27.714 | 350 | 168 | 12 | 93 | 384 | 299 | 621 | 2.67e-15 | 77.8 |
| Msa0251240 | MtrunA17_Chr1g0207481 | 24.691 | 243 | 128 | 6 | 188 | 376 | 369 | 610 | 3.30e-15 | 77.4 |
| Msa0251240 | MtrunA17_Chr4g0073681 | 28.959 | 221 | 97 | 5 | 208 | 377 | 399 | 610 | 1.72e-14 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0251240 | AT2G20815.1 | 34.324 | 370 | 153 | 12 | 93 | 374 | 101 | 468 | 1.13e-52 | 182 |
| Msa0251240 | AT2G20815.2 | 34.232 | 371 | 153 | 12 | 93 | 374 | 72 | 440 | 1.42e-52 | 181 |
| Msa0251240 | AT2G20815.3 | 34.232 | 371 | 153 | 12 | 93 | 374 | 101 | 469 | 1.68e-52 | 182 |
| Msa0251240 | AT2G20815.4 | 29.330 | 358 | 139 | 12 | 93 | 374 | 72 | 391 | 3.21e-33 | 129 |
| Msa0251240 | AT2G24070.1 | 29.224 | 219 | 94 | 5 | 208 | 375 | 376 | 584 | 1.24e-18 | 88.2 |
| Msa0251240 | AT2G24070.3 | 29.224 | 219 | 94 | 5 | 208 | 375 | 376 | 584 | 1.24e-18 | 88.2 |
| Msa0251240 | AT2G24070.2 | 29.224 | 219 | 94 | 5 | 208 | 375 | 376 | 584 | 1.24e-18 | 88.2 |
| Msa0251240 | AT4G30710.2 | 27.397 | 219 | 98 | 4 | 208 | 375 | 412 | 620 | 4.38e-18 | 86.7 |
| Msa0251240 | AT4G30710.3 | 27.397 | 219 | 98 | 4 | 208 | 375 | 412 | 620 | 4.79e-18 | 86.7 |
| Msa0251240 | AT4G30710.1 | 27.397 | 219 | 98 | 4 | 208 | 375 | 412 | 620 | 4.79e-18 | 86.7 |
| Msa0251240 | AT4G30710.4 | 27.143 | 210 | 92 | 4 | 208 | 366 | 412 | 611 | 1.19e-15 | 79.3 |
| Msa0251240 | AT3G19570.2 | 23.958 | 192 | 95 | 3 | 236 | 376 | 450 | 641 | 3.05e-12 | 68.6 |
| Msa0251240 | AT1G49890.1 | 24.903 | 257 | 116 | 7 | 187 | 376 | 400 | 646 | 1.08e-11 | 67.0 |
Find 76 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCACCATCGAATGGTTT+TGG | 0.272527 | 2_2:+40666141 | Msa0251240:CDS |
| CAAACGTTCTAATCTCTCTA+TGG | 0.280044 | 2_2:-40665621 | None:intergenic |
| AAGAAGCTTAATTCTAATAA+TGG | 0.280763 | 2_2:+40665715 | Msa0251240:CDS |
| ATTGGAAGCTTGGGGAAGTA+TGG | 0.297553 | 2_2:+40666783 | Msa0251240:CDS |
| CATGTTACAGGTTTAATCTT+AGG | 0.307341 | 2_2:-40668136 | None:intergenic |
| AAACTAATCCTACATGTTAC+AGG | 0.309421 | 2_2:-40668148 | None:intergenic |
| TTCAACTCCTTTCGCCTTTG+TGG | 0.332527 | 2_2:-40666064 | None:intergenic |
| AACCATTCGATGGTGAATTA+AGG | 0.340592 | 2_2:-40666137 | None:intergenic |
| TCATCCAAGGAAAACCTTCC+CGG | 0.341093 | 2_2:-40665751 | None:intergenic |
| ACAAGAGCAATTGGTGGTTC+TGG | 0.341427 | 2_2:+40665655 | Msa0251240:CDS |
| TCAACTCCTTTCGCCTTTGT+GGG | 0.346043 | 2_2:-40666063 | None:intergenic |
| TAATGGTTCAGGCATTGTTC+CGG | 0.354864 | 2_2:+40665732 | Msa0251240:CDS |
| CTTAATTCTAATAATGGTTC+AGG | 0.357073 | 2_2:+40665721 | Msa0251240:CDS |
| GTTAAAGTTATTGGAAGCTT+GGG | 0.357089 | 2_2:+40666774 | Msa0251240:intron |
| CATAACAGTATTTCTGAACT+TGG | 0.357992 | 2_2:-40666593 | None:intergenic |
| CAATGAAGCTTTGGCTTCTC+CGG | 0.358325 | 2_2:+40665834 | Msa0251240:CDS |
| TTGTTCTATAATTCTATCTT+CGG | 0.365225 | 2_2:-40665539 | None:intergenic |
| TGCTGCAATACTATCAGAAT+TGG | 0.365699 | 2_2:+40667701 | Msa0251240:CDS |
| AGCAGAATGCAAACACTCTT+TGG | 0.368717 | 2_2:-40666836 | None:intergenic |
| GCCTGGTTCAATTTGAAGAT+TGG | 0.377854 | 2_2:+40667927 | Msa0251240:CDS |
| AGAGCAATTTGATATGTGTC+TGG | 0.382143 | 2_2:+40666560 | Msa0251240:intron |
| AATGGTTCAGGCATTGTTCC+GGG | 0.388413 | 2_2:+40665733 | Msa0251240:CDS |
| CAAAGCTTCATTGTTGGATT+CGG | 0.388717 | 2_2:-40665824 | None:intergenic |
| ACTGCTAGGGATTACTTCAT+AGG | 0.393630 | 2_2:+40667976 | Msa0251240:CDS |
| AATGATCAAACAAGAGCAAT+TGG | 0.411484 | 2_2:+40665646 | Msa0251240:CDS |
| CGAATCCAACAATGAAGCTT+TGG | 0.417224 | 2_2:+40665825 | Msa0251240:CDS |
| GCATCACTCATCAACCTTGT+AGG | 0.424035 | 2_2:-40665880 | None:intergenic |
| AGTTAAAGTTATTGGAAGCT+TGG | 0.426135 | 2_2:+40666773 | Msa0251240:intron |
| GAAGAGGACTAATTCGATTA+CGG | 0.428004 | 2_2:+40665981 | Msa0251240:CDS |
| AAGAGGACTAATTCGATTAC+GGG | 0.433019 | 2_2:+40665982 | Msa0251240:CDS |
| AGATGTTCATAAGCTTCGTT+TGG | 0.444101 | 2_2:+40666173 | Msa0251240:CDS |
| ATATGGAGAAATAAAACTTA+AGG | 0.454898 | 2_2:-40668190 | None:intergenic |
| AGAAGCCAAAGCTTCATTGT+TGG | 0.458888 | 2_2:-40665830 | None:intergenic |
| TCACAGTGGGCTTTGTCACC+AGG | 0.459279 | 2_2:+40666021 | Msa0251240:CDS |
| GGAGCTTCTGATTCTAACAT+TGG | 0.470930 | 2_2:+40665925 | Msa0251240:CDS |
| TCTCTATGTAGATATAGATC+AGG | 0.476902 | 2_2:+40667999 | Msa0251240:three_prime_UTR |
| CTGTTCTACGTCGTCAACTC+TGG | 0.489175 | 2_2:+40665470 | Msa0251240:CDS |
| CAACTGCAGGATTTACTGCT+AGG | 0.490974 | 2_2:+40667962 | Msa0251240:CDS |
| TTGATAATCGTTTGATTCAG+TGG | 0.496593 | 2_2:+40666196 | Msa0251240:CDS |
| TTCAATTTGAAGATTGGCAA+AGG | 0.500856 | 2_2:+40667933 | Msa0251240:CDS |
| CTTGTAGGAACTTCCACCAC+TGG | 0.509361 | 2_2:-40665865 | None:intergenic |
| GGTGGTTCTGGAAGATTCAC+AGG | 0.510011 | 2_2:+40665667 | Msa0251240:CDS |
| GCCAATCTTCAAATTGAACC+AGG | 0.515880 | 2_2:-40667928 | None:intergenic |
| GAGCTTCTGATTCTAACATT+GGG | 0.516533 | 2_2:+40665926 | Msa0251240:CDS |
| ACATAACATATCTGTTGTTG+AGG | 0.527727 | 2_2:+40667776 | Msa0251240:CDS |
| GAATTAGTCCTCTTCATCAT+CGG | 0.532045 | 2_2:-40665973 | None:intergenic |
| CTTGAAAACTCTGACCTCCC+TGG | 0.540193 | 2_2:-40666039 | None:intergenic |
| GGCCTTAATTCACCATCGAA+TGG | 0.542030 | 2_2:+40666135 | Msa0251240:CDS |
| CGTTGAAACCGATGATGAAG+AGG | 0.543848 | 2_2:+40665965 | Msa0251240:CDS |
| CAACTCCTTTCGCCTTTGTG+GGG | 0.545829 | 2_2:-40666062 | None:intergenic |
| GCAAAGGAAATATCAACTGC+AGG | 0.551022 | 2_2:+40667949 | Msa0251240:CDS |
| TCTAACATTGGGAATTTGAA+CGG | 0.552992 | 2_2:+40665937 | Msa0251240:CDS |
| AACTGCAGGATTTACTGCTA+GGG | 0.555292 | 2_2:+40667963 | Msa0251240:CDS |
| TTGTTTCCAAAACCATTCGA+TGG | 0.559989 | 2_2:-40666147 | None:intergenic |
| AGATTAAACCTGTAACATGT+AGG | 0.572437 | 2_2:+40668140 | Msa0251240:three_prime_UTR |
| TCAAGCCCCACAAAGGCGAA+AGG | 0.573131 | 2_2:+40666057 | Msa0251240:CDS |
| GAGCAATTTGATATGTGTCT+GGG | 0.582338 | 2_2:+40666561 | Msa0251240:intron |
| TCCGGCAAGAAAACCAGTGG+TGG | 0.587118 | 2_2:+40665852 | Msa0251240:CDS |
| GTTCAGGCATTGTTCCGGGA+AGG | 0.588050 | 2_2:+40665737 | Msa0251240:CDS |
| CACAGTGGGCTTTGTCACCA+GGG | 0.588640 | 2_2:+40666022 | Msa0251240:CDS |
| AGAATGCAAACACTCTTTGG+TGG | 0.589899 | 2_2:-40666833 | None:intergenic |
| AAGCAGTGTAAAGTGCAGCC+TGG | 0.591075 | 2_2:+40667910 | Msa0251240:CDS |
| AAATTCAAGTATAACTAGCT+CGG | 0.591285 | 2_2:+40665795 | Msa0251240:CDS |
| CAGTGGTGGAAGTTCCTACA+AGG | 0.591497 | 2_2:+40665866 | Msa0251240:CDS |
| GATCAAACAAGAGCAATTGG+TGG | 0.611838 | 2_2:+40665649 | Msa0251240:CDS |
| TTAAAGTTATTGGAAGCTTG+GGG | 0.630426 | 2_2:+40666775 | Msa0251240:CDS |
| TGAGTGATGCAACATTGAGA+AGG | 0.641073 | 2_2:+40665893 | Msa0251240:CDS |
| CAAGAGTTCGAAATCACAGT+GGG | 0.647303 | 2_2:+40666008 | Msa0251240:CDS |
| ACATTGAGAAGGGCTAGAAG+AGG | 0.654076 | 2_2:+40665904 | Msa0251240:CDS |
| TTCTCCGGCAAGAAAACCAG+TGG | 0.654553 | 2_2:+40665849 | Msa0251240:CDS |
| GAGTGATGCAACATTGAGAA+GGG | 0.656920 | 2_2:+40665894 | Msa0251240:CDS |
| AAGCTTGGGGAAGTATGGAA+AGG | 0.660593 | 2_2:+40666788 | Msa0251240:CDS |
| AATTTGATATGTGTCTGGGA+TGG | 0.675214 | 2_2:+40666565 | Msa0251240:CDS |
| AGTGGGCTTTGTCACCAGGG+AGG | 0.741250 | 2_2:+40666025 | Msa0251240:CDS |
| ACAAGAGTTCGAAATCACAG+TGG | 0.753232 | 2_2:+40666007 | Msa0251240:CDS |
| AGAGGACTAATTCGATTACG+GGG | 0.771281 | 2_2:+40665983 | Msa0251240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTACAAAAACAAATT+TGG | - | chr2_2:40666718-40666737 | None:intergenic | 10.0% |
| !!! | TTAATATTTGAAATTGTTAA+CGG | - | chr2_2:40666990-40667009 | None:intergenic | 10.0% |
| !! | AACATATAAAAAAAATTCAA+CGG | - | chr2_2:40667037-40667056 | None:intergenic | 10.0% |
| !! | ATGATTAATTGAATATAAAA+AGG | + | chr2_2:40667337-40667356 | Msa0251240:intron | 10.0% |
| !!! | AAATCCTTTTAATTTATTTA+TGG | + | chr2_2:40667847-40667866 | Msa0251240:intron | 10.0% |
| !! | AAATTGAATTAACATTATCT+TGG | + | chr2_2:40666522-40666541 | Msa0251240:intron | 15.0% |
| !!! | CGTTTAAAAATTTAAAATCA+TGG | - | chr2_2:40667400-40667419 | None:intergenic | 15.0% |
| !! | TCAACCATAAATAAATTAAA+AGG | - | chr2_2:40667854-40667873 | None:intergenic | 15.0% |
| !! | TTGTTCTATAATTCTATCTT+CGG | - | chr2_2:40665542-40665561 | None:intergenic | 20.0% |
| !! | AAGAAGCTTAATTCTAATAA+TGG | + | chr2_2:40665715-40665734 | Msa0251240:CDS | 20.0% |
| !!! | AACTGATTTATTGTTGTTTT+TGG | + | chr2_2:40666749-40666768 | Msa0251240:intron | 20.0% |
| !!! | AAGTGATATTTTTCGATTTA+AGG | + | chr2_2:40666920-40666939 | Msa0251240:intron | 20.0% |
| !!! | AGTGATATTTTTCGATTTAA+GGG | + | chr2_2:40666921-40666940 | Msa0251240:intron | 20.0% |
| !! | TCATAAATTTGACAATAATG+TGG | + | chr2_2:40667271-40667290 | Msa0251240:intron | 20.0% |
| !! | GTTAATGCAATTCAAATAAA+TGG | + | chr2_2:40667297-40667316 | Msa0251240:intron | 20.0% |
| !! | AATAAATGGTTAACTACATT+CGG | + | chr2_2:40667311-40667330 | Msa0251240:intron | 20.0% |
| !! | AAATCATGGTTAATTATGTT+CGG | - | chr2_2:40667386-40667405 | None:intergenic | 20.0% |
| !!! | GATTTTATCACTATATATGT+TGG | + | chr2_2:40667876-40667895 | Msa0251240:intron | 20.0% |
| ! | CTTAATTCTAATAATGGTTC+AGG | + | chr2_2:40665721-40665740 | Msa0251240:CDS | 25.0% |
| ! | AAATTCAAGTATAACTAGCT+CGG | + | chr2_2:40665795-40665814 | Msa0251240:CDS | 25.0% |
| !! | GTTGAAAAACTACTCAATTT+TGG | + | chr2_2:40666081-40666100 | Msa0251240:CDS | 25.0% |
| ! | TTCAAGAGTAAAAAATCTGT+TGG | + | chr2_2:40666114-40666133 | Msa0251240:CDS | 25.0% |
| ! | CAACTTATGAAAACAACTTA+CGG | - | chr2_2:40666330-40666349 | None:intergenic | 25.0% |
| ! | TGTTGAAATAAACTGAAACT+AGG | + | chr2_2:40666361-40666380 | Msa0251240:intron | 25.0% |
| ! | GGCAGATATTAATCAAAATT+TGG | - | chr2_2:40666697-40666716 | None:intergenic | 25.0% |
| !!! | TTTTTGGCAGTTAAAGTTAT+TGG | + | chr2_2:40666765-40666784 | Msa0251240:intron | 25.0% |
| ! | ATTTCTATTTCACAAACTTG+AGG | + | chr2_2:40666949-40666968 | Msa0251240:intron | 25.0% |
| ! | TTTCTATTTCACAAACTTGA+GGG | + | chr2_2:40666950-40666969 | Msa0251240:intron | 25.0% |
| !! | TATTTGAAATTGTTAACGGT+TGG | - | chr2_2:40666986-40667005 | None:intergenic | 25.0% |
| ! | ATAATCTAAGTGATCATGAT+AGG | + | chr2_2:40667062-40667081 | Msa0251240:intron | 25.0% |
| ! | TAATCTAAGTGATCATGATA+GGG | + | chr2_2:40667063-40667082 | Msa0251240:intron | 25.0% |
| !!! | AGAAGTTAACATTGACTTAA+TGG | - | chr2_2:40667184-40667203 | None:intergenic | 25.0% |
| ! | ATTGTGCTAGTCATTTATTA+CGG | + | chr2_2:40667232-40667251 | Msa0251240:intron | 25.0% |
| ! | CTGTATATTTGAATGCAATT+TGG | + | chr2_2:40667427-40667446 | Msa0251240:intron | 25.0% |
| !!! | TTCTCTTTTGCTATATATGA+AGG | + | chr2_2:40667633-40667652 | Msa0251240:intron | 25.0% |
| AATGATCAAACAAGAGCAAT+TGG | + | chr2_2:40665646-40665665 | Msa0251240:CDS | 30.0% | |
| TCTAACATTGGGAATTTGAA+CGG | + | chr2_2:40665937-40665956 | Msa0251240:CDS | 30.0% | |
| ! | TTGATAATCGTTTGATTCAG+TGG | + | chr2_2:40666196-40666215 | Msa0251240:CDS | 30.0% |
| TTTATTTCAACAAGTGTTCC+GGG | - | chr2_2:40666353-40666372 | None:intergenic | 30.0% | |
| GTTTATTTCAACAAGTGTTC+CGG | - | chr2_2:40666354-40666373 | None:intergenic | 30.0% | |
| ! | CATAACAGTATTTCTGAACT+TGG | - | chr2_2:40666596-40666615 | None:intergenic | 30.0% |
| AGTTAAAGTTATTGGAAGCT+TGG | + | chr2_2:40666773-40666792 | Msa0251240:intron | 30.0% | |
| GTTAAAGTTATTGGAAGCTT+GGG | + | chr2_2:40666774-40666793 | Msa0251240:intron | 30.0% | |
| TTAAAGTTATTGGAAGCTTG+GGG | + | chr2_2:40666775-40666794 | Msa0251240:CDS | 30.0% | |
| CCTGTAAGTTAAGCATAAAA+AGG | - | chr2_2:40667107-40667126 | None:intergenic | 30.0% | |
| ! | CCTTTTTATGCTTAACTTAC+AGG | + | chr2_2:40667104-40667123 | Msa0251240:intron | 30.0% |
| TTGTGCTAGTCATTTATTAC+GGG | + | chr2_2:40667233-40667252 | Msa0251240:intron | 30.0% | |
| !! | TATTACGGGTTGTGTAATTT+TGG | + | chr2_2:40667247-40667266 | Msa0251240:intron | 30.0% |
| ATTTGAAAACATGCAAATCG+TGG | + | chr2_2:40667472-40667491 | Msa0251240:intron | 30.0% | |
| CGCAAAATTTGACAACAATT+TGG | - | chr2_2:40667601-40667620 | None:intergenic | 30.0% | |
| ATATGAAGGCTTCATTCATA+TGG | + | chr2_2:40667647-40667666 | Msa0251240:intron | 30.0% | |
| ACATAACATATCTGTTGTTG+AGG | + | chr2_2:40667776-40667795 | Msa0251240:CDS | 30.0% | |
| TTCAATTTGAAGATTGGCAA+AGG | + | chr2_2:40667933-40667952 | Msa0251240:CDS | 30.0% | |
| TCTCTATGTAGATATAGATC+AGG | + | chr2_2:40667999-40668018 | Msa0251240:three_prime_UTR | 30.0% | |
| !! | GCAAGTTTTGTACTTATACA+TGG | + | chr2_2:40668112-40668131 | Msa0251240:three_prime_UTR | 30.0% |
| CATGTTACAGGTTTAATCTT+AGG | - | chr2_2:40668139-40668158 | None:intergenic | 30.0% | |
| AGATTAAACCTGTAACATGT+AGG | + | chr2_2:40668140-40668159 | Msa0251240:three_prime_UTR | 30.0% | |
| AAACTAATCCTACATGTTAC+AGG | - | chr2_2:40668151-40668170 | None:intergenic | 30.0% | |
| !! | GACTTATTTTTCGCAGAAGA+AGG | - | chr2_2:40665496-40665515 | None:intergenic | 35.0% |
| TCTTCTGCGAAAAATAAGTC+TGG | + | chr2_2:40665496-40665515 | Msa0251240:CDS | 35.0% | |
| CAAACGTTCTAATCTCTCTA+TGG | - | chr2_2:40665624-40665643 | None:intergenic | 35.0% | |
| ! | CAGTTTAGCATTTTCATCCA+AGG | - | chr2_2:40665767-40665786 | None:intergenic | 35.0% |
| CAAAGCTTCATTGTTGGATT+CGG | - | chr2_2:40665827-40665846 | None:intergenic | 35.0% | |
| GAGCTTCTGATTCTAACATT+GGG | + | chr2_2:40665926-40665945 | Msa0251240:CDS | 35.0% | |
| GAATTAGTCCTCTTCATCAT+CGG | - | chr2_2:40665976-40665995 | None:intergenic | 35.0% | |
| GAAGAGGACTAATTCGATTA+CGG | + | chr2_2:40665981-40666000 | Msa0251240:CDS | 35.0% | |
| AAGAGGACTAATTCGATTAC+GGG | + | chr2_2:40665982-40666001 | Msa0251240:CDS | 35.0% | |
| AACCATTCGATGGTGAATTA+AGG | - | chr2_2:40666140-40666159 | None:intergenic | 35.0% | |
| ! | AATTCACCATCGAATGGTTT+TGG | + | chr2_2:40666141-40666160 | Msa0251240:CDS | 35.0% |
| TTGTTTCCAAAACCATTCGA+TGG | - | chr2_2:40666150-40666169 | None:intergenic | 35.0% | |
| AGATGTTCATAAGCTTCGTT+TGG | + | chr2_2:40666173-40666192 | Msa0251240:CDS | 35.0% | |
| TTAGACAAACAAGTGTACCT+CGG | - | chr2_2:40666274-40666293 | None:intergenic | 35.0% | |
| !! | AGTTGTTTTCATAAGTTGCC+CGG | + | chr2_2:40666332-40666351 | Msa0251240:intron | 35.0% |
| AGAGCAATTTGATATGTGTC+TGG | + | chr2_2:40666560-40666579 | Msa0251240:intron | 35.0% | |
| GAGCAATTTGATATGTGTCT+GGG | + | chr2_2:40666561-40666580 | Msa0251240:intron | 35.0% | |
| AATTTGATATGTGTCTGGGA+TGG | + | chr2_2:40666565-40666584 | Msa0251240:CDS | 35.0% | |
| ! | TTTTTCACCTGCAGTAAGTT+TGG | + | chr2_2:40667203-40667222 | Msa0251240:intron | 35.0% |
| TCATGGTTAATTATGTTCGG+TGG | - | chr2_2:40667383-40667402 | None:intergenic | 35.0% | |
| AATGCAATTTGGATAGTCAG+TGG | + | chr2_2:40667438-40667457 | Msa0251240:intron | 35.0% | |
| GCTAAACATCGTGGTTAATT+TGG | + | chr2_2:40667503-40667522 | Msa0251240:intron | 35.0% | |
| GGAAAAATTTCTCTGTCAAC+AGG | + | chr2_2:40667668-40667687 | Msa0251240:intron | 35.0% | |
| TGCTGCAATACTATCAGAAT+TGG | + | chr2_2:40667701-40667720 | Msa0251240:CDS | 35.0% | |
| GATCAAACAAGAGCAATTGG+TGG | + | chr2_2:40665649-40665668 | Msa0251240:CDS | 40.0% | |
| ! | TAATGGTTCAGGCATTGTTC+CGG | + | chr2_2:40665732-40665751 | Msa0251240:CDS | 40.0% |
| CGAATCCAACAATGAAGCTT+TGG | + | chr2_2:40665825-40665844 | Msa0251240:CDS | 40.0% | |
| AGAAGCCAAAGCTTCATTGT+TGG | - | chr2_2:40665833-40665852 | None:intergenic | 40.0% | |
| TGAGTGATGCAACATTGAGA+AGG | + | chr2_2:40665893-40665912 | Msa0251240:CDS | 40.0% | |
| GAGTGATGCAACATTGAGAA+GGG | + | chr2_2:40665894-40665913 | Msa0251240:CDS | 40.0% | |
| GGAGCTTCTGATTCTAACAT+TGG | + | chr2_2:40665925-40665944 | Msa0251240:CDS | 40.0% | |
| AGAGGACTAATTCGATTACG+GGG | + | chr2_2:40665983-40666002 | Msa0251240:CDS | 40.0% | |
| ACAAGAGTTCGAAATCACAG+TGG | + | chr2_2:40666007-40666026 | Msa0251240:CDS | 40.0% | |
| CAAGAGTTCGAAATCACAGT+GGG | + | chr2_2:40666008-40666027 | Msa0251240:CDS | 40.0% | |
| !! | ACGCTCTAAGACAAGATAAG+TGG | + | chr2_2:40666436-40666455 | Msa0251240:intron | 40.0% |
| AGAATGCAAACACTCTTTGG+TGG | - | chr2_2:40666836-40666855 | None:intergenic | 40.0% | |
| AGCAGAATGCAAACACTCTT+TGG | - | chr2_2:40666839-40666858 | None:intergenic | 40.0% | |
| CTAAGTGATCATGATAGGGA+TGG | + | chr2_2:40667067-40667086 | Msa0251240:intron | 40.0% | |
| ! | TACATCCATTGCTATTCGTC+AGG | + | chr2_2:40667140-40667159 | Msa0251240:intron | 40.0% |
| TGTGTAACCAAACTTACTGC+AGG | - | chr2_2:40667213-40667232 | None:intergenic | 40.0% | |
| ! | TTATGTTCGGTGGATGGTTA+TGG | - | chr2_2:40667373-40667392 | None:intergenic | 40.0% |
| ! | GGTTAATTATGTTCGGTGGA+TGG | - | chr2_2:40667379-40667398 | None:intergenic | 40.0% |
| GCTAATGAAGCTAAACATCG+TGG | + | chr2_2:40667494-40667513 | Msa0251240:intron | 40.0% | |
| GCCTGGTTCAATTTGAAGAT+TGG | + | chr2_2:40667927-40667946 | Msa0251240:CDS | 40.0% | |
| GCCAATCTTCAAATTGAACC+AGG | - | chr2_2:40667931-40667950 | None:intergenic | 40.0% | |
| GCAAAGGAAATATCAACTGC+AGG | + | chr2_2:40667949-40667968 | Msa0251240:CDS | 40.0% | |
| AACTGCAGGATTTACTGCTA+GGG | + | chr2_2:40667963-40667982 | Msa0251240:CDS | 40.0% | |
| ACTGCTAGGGATTACTTCAT+AGG | + | chr2_2:40667976-40667995 | Msa0251240:CDS | 40.0% | |
| ! | ACAAGAGCAATTGGTGGTTC+TGG | + | chr2_2:40665655-40665674 | Msa0251240:CDS | 45.0% |
| ! | AATGGTTCAGGCATTGTTCC+GGG | + | chr2_2:40665733-40665752 | Msa0251240:CDS | 45.0% |
| TCATCCAAGGAAAACCTTCC+CGG | - | chr2_2:40665754-40665773 | None:intergenic | 45.0% | |
| ! | CAATGAAGCTTTGGCTTCTC+CGG | + | chr2_2:40665834-40665853 | Msa0251240:CDS | 45.0% |
| GCATCACTCATCAACCTTGT+AGG | - | chr2_2:40665883-40665902 | None:intergenic | 45.0% | |
| ACATTGAGAAGGGCTAGAAG+AGG | + | chr2_2:40665904-40665923 | Msa0251240:CDS | 45.0% | |
| CGTTGAAACCGATGATGAAG+AGG | + | chr2_2:40665965-40665984 | Msa0251240:CDS | 45.0% | |
| !! | AGAGTTTTCAAGCCCCACAA+AGG | + | chr2_2:40666050-40666069 | Msa0251240:CDS | 45.0% |
| TCAACTCCTTTCGCCTTTGT+GGG | - | chr2_2:40666066-40666085 | None:intergenic | 45.0% | |
| TTCAACTCCTTTCGCCTTTG+TGG | - | chr2_2:40666067-40666086 | None:intergenic | 45.0% | |
| GGCCTTAATTCACCATCGAA+TGG | + | chr2_2:40666135-40666154 | Msa0251240:CDS | 45.0% | |
| ATTGGAAGCTTGGGGAAGTA+TGG | + | chr2_2:40666783-40666802 | Msa0251240:CDS | 45.0% | |
| ! | AAGCTTGGGGAAGTATGGAA+AGG | + | chr2_2:40666788-40666807 | Msa0251240:CDS | 45.0% |
| ! | TGTGTGCAGAGTTCCTCTTT+TGG | + | chr2_2:40666858-40666877 | Msa0251240:intron | 45.0% |
| ! | TGCAGAGTTCCTCTTTTGGA+AGG | + | chr2_2:40666862-40666881 | Msa0251240:intron | 45.0% |
| !!! | TCCTCTTTTGGAAGGTGCTA+AGG | + | chr2_2:40666870-40666889 | Msa0251240:intron | 45.0% |
| ACCTTAGCACCTTCCAAAAG+AGG | - | chr2_2:40666874-40666893 | None:intergenic | 45.0% | |
| CAACTGCAGGATTTACTGCT+AGG | + | chr2_2:40667962-40667981 | Msa0251240:CDS | 45.0% | |
| CTGTTCTACGTCGTCAACTC+TGG | + | chr2_2:40665470-40665489 | Msa0251240:CDS | 50.0% | |
| !! | GGTGGTTCTGGAAGATTCAC+AGG | + | chr2_2:40665667-40665686 | Msa0251240:CDS | 50.0% |
| ! | TGTTCCGGGAAGGTTTTCCT+TGG | + | chr2_2:40665747-40665766 | Msa0251240:CDS | 50.0% |
| TTCTCCGGCAAGAAAACCAG+TGG | + | chr2_2:40665849-40665868 | Msa0251240:CDS | 50.0% | |
| !!! | TCCACCACTGGTTTTCTTGC+CGG | - | chr2_2:40665856-40665875 | None:intergenic | 50.0% |
| CTTGTAGGAACTTCCACCAC+TGG | - | chr2_2:40665868-40665887 | None:intergenic | 50.0% | |
| ! | CAGTGGTGGAAGTTCCTACA+AGG | + | chr2_2:40665866-40665885 | Msa0251240:CDS | 50.0% |
| CTTGAAAACTCTGACCTCCC+TGG | - | chr2_2:40666042-40666061 | None:intergenic | 50.0% | |
| CAACTCCTTTCGCCTTTGTG+GGG | - | chr2_2:40666065-40666084 | None:intergenic | 50.0% | |
| AAACATTTCTCGCCACACCG+AGG | + | chr2_2:40666254-40666273 | Msa0251240:intron | 50.0% | |
| CAAACAAGTGTACCTCGGTG+TGG | - | chr2_2:40666269-40666288 | None:intergenic | 50.0% | |
| AGAGGCCTGACGAATAGCAA+TGG | - | chr2_2:40667148-40667167 | None:intergenic | 50.0% | |
| AATGGAAGCTGCGAGATCAG+AGG | - | chr2_2:40667166-40667185 | None:intergenic | 50.0% | |
| AAGCAGTGTAAAGTGCAGCC+TGG | + | chr2_2:40667910-40667929 | Msa0251240:CDS | 50.0% | |
| ! | GTTCAGGCATTGTTCCGGGA+AGG | + | chr2_2:40665737-40665756 | Msa0251240:CDS | 55.0% |
| TCCGGCAAGAAAACCAGTGG+TGG | + | chr2_2:40665852-40665871 | Msa0251240:CDS | 55.0% | |
| ! | TCACAGTGGGCTTTGTCACC+AGG | + | chr2_2:40666021-40666040 | Msa0251240:CDS | 55.0% |
| ! | CACAGTGGGCTTTGTCACCA+GGG | + | chr2_2:40666022-40666041 | Msa0251240:CDS | 55.0% |
| TCAAGCCCCACAAAGGCGAA+AGG | + | chr2_2:40666057-40666076 | Msa0251240:CDS | 55.0% | |
| ! | AGTGGGCTTTGTCACCAGGG+AGG | + | chr2_2:40666025-40666044 | Msa0251240:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 40665469 | 40668206 | 40665469 | ID=Msa0251240;Name=Msa0251240 |
| chr2_2 | mRNA | 40665469 | 40668206 | 40665469 | ID=Msa0251240-mRNA-1;Parent=Msa0251240;Name=Msa0251240-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.25|0.4|1|0.75|0.6|5|209|394 |
| chr2_2 | exon | 40665469 | 40666245 | 40665469 | ID=Msa0251240-mRNA-1:exon:12694;Parent=Msa0251240-mRNA-1 |
| chr2_2 | exon | 40666562 | 40666681 | 40666562 | ID=Msa0251240-mRNA-1:exon:12695;Parent=Msa0251240-mRNA-1 |
| chr2_2 | exon | 40666775 | 40666858 | 40666775 | ID=Msa0251240-mRNA-1:exon:12696;Parent=Msa0251240-mRNA-1 |
| chr2_2 | exon | 40667690 | 40667797 | 40667690 | ID=Msa0251240-mRNA-1:exon:12697;Parent=Msa0251240-mRNA-1 |
| chr2_2 | exon | 40667902 | 40668206 | 40667902 | ID=Msa0251240-mRNA-1:exon:12698;Parent=Msa0251240-mRNA-1 |
| chr2_2 | CDS | 40665469 | 40666245 | 40665469 | ID=Msa0251240-mRNA-1:cds;Parent=Msa0251240-mRNA-1 |
| chr2_2 | CDS | 40666562 | 40666681 | 40666562 | ID=Msa0251240-mRNA-1:cds;Parent=Msa0251240-mRNA-1 |
| chr2_2 | CDS | 40666775 | 40666858 | 40666775 | ID=Msa0251240-mRNA-1:cds;Parent=Msa0251240-mRNA-1 |
| chr2_2 | CDS | 40667690 | 40667797 | 40667690 | ID=Msa0251240-mRNA-1:cds;Parent=Msa0251240-mRNA-1 |
| chr2_2 | CDS | 40667902 | 40667997 | 40667902 | ID=Msa0251240-mRNA-1:cds;Parent=Msa0251240-mRNA-1 |
| chr2_2 | three_prime_UTR | 40667998 | 40668206 | 40667998 | ID=Msa0251240-mRNA-1:three_prime_utr;Parent=Msa0251240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
