AlfalfaGEDB | Msa0531430

M. sativa cultivar zhongmu-4 / Msa0531430

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0531430	AES86643.1	92.893	197	14	0	1	197	1	197	4.42e-131	376

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0531430	G7JI77	92.893	197	14	0	1	197	1	197	2.11e-131	376

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004870	Msa0531430	0.809872	1.526616e-50	-8.615850e-47
Msa0004880	Msa0531430	0.828440	8.978850e-55	-8.615850e-47
Msa0017510	Msa0531430	0.834142	3.555587e-56	-8.615850e-47
Msa0022640	Msa0531430	0.808098	3.659974e-50	-8.615850e-47
Msa0028640	Msa0531430	0.805773	1.135176e-49	-8.615850e-47
Msa0032500	Msa0531430	0.810700	1.011738e-50	-8.615850e-47
Msa0036430	Msa0531430	0.804302	2.305970e-49	-8.615850e-47
Msa0036960	Msa0531430	0.847993	8.132671e-60	-8.615850e-47
Msa0044100	Msa0531430	0.869401	3.183906e-66	-8.615850e-47
Msa0051780	Msa0531430	0.805845	1.096568e-49	-8.615850e-47
Msa0051790	Msa0531430	0.811383	7.195072e-51	-8.615850e-47
Msa0072370	Msa0531430	0.818760	1.656460e-52	-8.615850e-47
Msa0078430	Msa0531430	0.845454	4.020749e-59	-8.615850e-47
Msa0095540	Msa0531430	0.870202	1.743803e-66	-8.615850e-47
Msa0096000	Msa0531430	0.822467	2.332350e-53	-8.615850e-47
Msa0110970	Msa0531430	0.801700	7.958199e-49	-8.615850e-47
Msa0112750	Msa0531430	0.816271	6.027011e-52	-8.615850e-47
Msa0130570	Msa0531430	0.804123	2.512866e-49	-8.615850e-47
Msa0140780	Msa0531430	0.801817	7.527904e-49	-8.615850e-47
Msa0141100	Msa0531430	0.904690	9.433196e-80	-8.615850e-47
Msa0148340	Msa0531430	0.808005	3.831114e-50	-8.615850e-47
Msa0153420	Msa0531430	0.825767	3.917350e-54	-8.615850e-47
Msa0157290	Msa0531430	0.832963	7.004038e-56	-8.615850e-47
Msa0161680	Msa0531430	0.804534	2.063216e-49	-8.615850e-47
Msa0163980	Msa0531430	0.811396	7.150935e-51	-8.615850e-47
Msa0173090	Msa0531430	0.810352	1.202790e-50	-8.615850e-47
Msa0173990	Msa0531430	0.813404	2.604378e-51	-8.615850e-47
Msa0183750	Msa0531430	0.898972	3.139277e-77	-8.615850e-47
Msa0185380	Msa0531430	0.803697	3.080008e-49	-8.615850e-47
Msa0185480	Msa0531430	0.800098	1.690494e-48	-8.615850e-47
Msa0185640	Msa0531430	-0.804190	2.433450e-49	-8.615850e-47
Msa0191040	Msa0531430	0.892417	1.617754e-74	-8.615850e-47
Msa0200260	Msa0531430	0.803101	4.094199e-49	-8.615850e-47
Msa0206800	Msa0531430	0.824556	7.570561e-54	-8.615850e-47
Msa0220300	Msa0531430	0.889898	1.603336e-73	-8.615850e-47
Msa0225600	Msa0531430	0.862713	4.169721e-64	-8.615850e-47
Msa0233340	Msa0531430	0.892475	1.534049e-74	-8.615850e-47
Msa0236440	Msa0531430	0.829668	4.526016e-55	-8.615850e-47
Msa0374850	Msa0531430	0.901287	3.120789e-78	-8.615850e-47
Msa0375090	Msa0531430	0.898833	3.600014e-77	-8.615850e-47
Msa0385670	Msa0531430	0.829422	5.193588e-55	-8.615850e-47
Msa0419820	Msa0531430	0.800926	1.145834e-48	-8.615850e-47
Msa0426360	Msa0531430	0.804970	1.672719e-49	-8.615850e-47
Msa0426400	Msa0531430	0.807001	6.255428e-50	-8.615850e-47
Msa0435670	Msa0531430	0.802990	4.315306e-49	-8.615850e-47
Msa0470340	Msa0531430	0.899200	2.506570e-77	-8.615850e-47
Msa0470860	Msa0531430	0.877252	7.292224e-69	-8.615850e-47
Msa0479680	Msa0531430	0.804577	2.020486e-49	-8.615850e-47
Msa0479700	Msa0531430	0.804661	1.940654e-49	-8.615850e-47
Msa0480950	Msa0531430	0.879641	1.055577e-69	-8.615850e-47
Msa0481110	Msa0531430	0.844168	8.935645e-59	-8.615850e-47
Msa0243100	Msa0531430	0.801334	9.456407e-49	-8.615850e-47
Msa0246430	Msa0531430	0.807039	6.141686e-50	-8.615850e-47
Msa0251240	Msa0531430	0.878638	2.388015e-69	-8.615850e-47
Msa0266450	Msa0531430	0.872796	2.414047e-67	-8.615850e-47
Msa0271040	Msa0531430	0.811885	5.597773e-51	-8.615850e-47
Msa0282210	Msa0531430	0.835252	1.869846e-56	-8.615850e-47
Msa0287650	Msa0531430	0.804187	2.436300e-49	-8.615850e-47
Msa0288190	Msa0531430	0.843137	1.685769e-58	-8.615850e-47
Msa0288200	Msa0531430	0.840670	7.562644e-58	-8.615850e-47
Msa0290010	Msa0531430	0.814016	1.909092e-51	-8.615850e-47
Msa0299430	Msa0531430	0.809840	1.550648e-50	-8.615850e-47
Msa0301200	Msa0531430	0.816455	5.482326e-52	-8.615850e-47
Msa0309350	Msa0531430	0.816950	4.245426e-52	-8.615850e-47
Msa0311690	Msa0531430	0.880133	7.052258e-70	-8.615850e-47
Msa0315250	Msa0531430	0.849517	3.074017e-60	-8.615850e-47
Msa0326540	Msa0531430	0.831711	1.430082e-55	-8.615850e-47
Msa0334500	Msa0531430	0.838738	2.405236e-57	-8.615850e-47
Msa0483860	Msa0531430	0.819394	1.188368e-52	-8.615850e-47
Msa0484780	Msa0531430	0.814549	1.455660e-51	-8.615850e-47
Msa0503580	Msa0531430	0.814200	1.739165e-51	-8.615850e-47
Msa0513350	Msa0531430	0.805783	1.130030e-49	-8.615850e-47
Msa0520510	Msa0531430	0.824574	7.498309e-54	-8.615850e-47
Msa0531430	Msa0532710	0.807631	4.598788e-50	-8.615850e-47
Msa0531430	Msa0534570	0.899078	2.828986e-77	-8.615850e-47
Msa0531430	Msa0534590	0.917149	7.540301e-86	-8.615850e-47
Msa0531430	Msa0548620	0.808065	3.719558e-50	-8.615850e-47
Msa0531430	Msa0548660	0.810101	1.362619e-50	-8.615850e-47
Msa0531430	Msa0557680	0.808294	3.324434e-50	-8.615850e-47
Msa0531430	Msa0565600	0.870803	1.107504e-66	-8.615850e-47
Msa0531430	Msa0568820	0.801442	8.985133e-49	-8.615850e-47
Msa0531430	Msa0574460	0.818556	1.843155e-52	-8.615850e-47
Msa0531430	Msa0590800	0.910534	1.682307e-82	-8.615850e-47
Msa0531430	Msa0606360	0.804407	2.192565e-49	-8.615850e-47
Msa0531430	Msa0609430	0.810085	1.373256e-50	-8.615850e-47
Msa0531430	Msa0611380	0.947750	3.661486e-106	-8.615850e-47
Msa0531430	Msa0618180	0.870069	1.926933e-66	-8.615850e-47
Msa0531430	Msa0618220	0.840995	6.214504e-58	-8.615850e-47
Msa0531430	Msa0618290	0.849825	2.521170e-60	-8.615850e-47
Msa0531430	Msa0619990	0.865665	5.006985e-65	-8.615850e-47
Msa0531430	Msa0628640	0.898877	3.447139e-77	-8.615850e-47
Msa0531430	Msa0631120	0.933795	1.087863e-95	-8.615850e-47
Msa0531430	Msa0633840	0.802989	4.317881e-49	-8.615850e-47
Msa0531430	Msa0650070	0.810566	1.081570e-50	-8.615850e-47
Msa0531430	Msa0653020	0.808639	2.805658e-50	-8.615850e-47
Msa0531430	Msa0657970	0.808339	3.251060e-50	-8.615850e-47
Msa0531430	Msa0666030	0.939155	2.042484e-99	-8.615850e-47
Msa0531430	Msa0669340	0.911507	5.622693e-83	-8.615850e-47
Msa0531430	Msa0684500	0.830864	2.309632e-55	-8.615850e-47
Msa0531430	Msa0692060	0.812345	4.443010e-51	-8.615850e-47
Msa0531430	Msa0701770	0.806321	8.708277e-50	-8.615850e-47
Msa0531430	Msa0701970	0.864004	1.660601e-64	-8.615850e-47
Msa0531430	Msa0706360	0.802429	5.633222e-49	-8.615850e-47
Msa0531430	Msa0706420	0.847130	1.404440e-59	-8.615850e-47
Msa0531430	Msa0708130	0.816694	4.844732e-52	-8.615850e-47
Msa0531430	Msa0709500	0.817697	2.882407e-52	-8.615850e-47
Msa0531430	Msa0716450	0.905710	3.218727e-80	-8.615850e-47
Msa0531430	Msa0717260	0.919821	2.785612e-87	-8.615850e-47
Msa0531430	Msa0734230	0.845570	3.740825e-59	-8.615850e-47
Msa0531430	Msa0754370	0.809194	2.134933e-50	-8.615850e-47
Msa0531430	Msa0758320	0.908423	1.738624e-81	-8.615850e-47
Msa0531430	Msa0773610	0.822418	2.393971e-53	-8.615850e-47
Msa0531430	Msa0775440	0.864788	9.447374e-65	-8.615850e-47
Msa0531430	Msa0776220	0.803681	3.103918e-49	-8.615850e-47
Msa0531430	Msa0790850	0.814282	1.667508e-51	-8.615850e-47
Msa0531430	Msa0795690	0.812465	4.181345e-51	-8.615850e-47
Msa0531430	Msa0799030	0.885384	8.519366e-72	-8.615850e-47
Msa0531430	Msa0799700	0.866488	2.748399e-65	-8.615850e-47
Msa0531430	Msa0810020	0.823896	1.082254e-53	-8.615850e-47
Msa0531430	Msa0812820	0.882328	1.142387e-70	-8.615850e-47
Msa0531430	Msa0833340	0.814088	1.840946e-51	-8.615850e-47
Msa0531430	Msa0837440	0.888078	8.121104e-73	-8.615850e-47
Msa0531430	Msa0837980	0.906366	1.602170e-80	-8.615850e-47
Msa0531430	Msa0853320	0.898243	6.420555e-77	-8.615850e-47
Msa0531430	Msa0858840	0.828741	7.596234e-55	-8.615850e-47
Msa0531430	Msa0870620	0.803227	3.855494e-49	-8.615850e-47
Msa0531430	Msa0880140	0.835989	1.216684e-56	-8.615850e-47
Msa0531430	Msa0880710	0.847897	8.645629e-60	-8.615850e-47
Msa0531430	Msa0885060	0.801896	7.252462e-49	-8.615850e-47
Msa0531430	Msa0936270	0.806219	9.148499e-50	-8.615850e-47
Msa0531430	Msa0944770	0.806356	8.560592e-50	-8.615850e-47
Msa0531430	Msa0962770	0.805802	1.119594e-49	-8.615850e-47
Msa0531430	Msa0966420	0.811984	5.324899e-51	-8.615850e-47
Msa0531430	Msa0970030	0.802015	6.854931e-49	-8.615850e-47
Msa0531430	Msa0979510	0.833017	6.789882e-56	-8.615850e-47
Msa0531430	Msa0981010	0.831687	1.449059e-55	-8.615850e-47
Msa0531430	Msa1001770	0.801877	7.316139e-49	-8.615850e-47
Msa0531430	Msa1002620	0.884617	1.645329e-71	-8.615850e-47
Msa0531430	Msa1007610	-0.813806	2.124062e-51	-8.615850e-47
Msa0531430	Msa1010110	0.851357	9.357364e-61	-8.615850e-47
Msa0531430	Msa1013400	0.811597	6.465645e-51	-8.615850e-47
Msa0531430	Msa1020720	0.820301	7.374939e-53	-8.615850e-47
Msa0531430	Msa1033560	0.834476	2.931369e-56	-8.615850e-47
Msa0531430	Msa1040400	0.805277	1.442483e-49	-8.615850e-47
Msa0531430	Msa1073340	0.824107	9.652959e-54	-8.615850e-47
Msa0531430	Msa1073350	0.817238	3.656811e-52	-8.615850e-47
Msa0531430	Msa1083150	0.809270	2.055550e-50	-8.615850e-47
Msa0531430	Msa1098560	0.810156	1.325954e-50	-8.615850e-47
Msa0531430	Msa1113850	0.847374	1.204433e-59	-8.615850e-47
Msa0531430	Msa1125760	0.825804	3.838252e-54	-8.615850e-47
Msa0531430	Msa1160400	0.841224	5.410414e-58	-8.615850e-47
Msa0531430	Msa1170730	0.805698	1.177175e-49	-8.615850e-47
Msa0531430	Msa1171360	0.817134	3.860490e-52	-8.615850e-47
Msa0531430	Msa1172450	0.818750	1.665030e-52	-8.615850e-47
Msa0531430	Msa1172670	0.828898	6.958870e-55	-8.615850e-47
Msa0531430	Msa1179460	0.850695	1.438333e-60	-8.615850e-47
Msa0531430	Msa1190120	0.866650	2.442072e-65	-8.615850e-47
Msa0531430	Msa1197590	0.848041	7.890680e-60	-8.615850e-47
Msa0531430	Msa1201890	0.830078	3.596671e-55	-8.615850e-47
Msa0531430	Msa1203000	0.895408	9.860146e-76	-8.615850e-47
Msa0531430	Msa1205010	-0.801351	9.379022e-49	-8.615850e-47
Msa0531430	Msa1205960	0.821875	3.200279e-53	-8.615850e-47
Msa0531430	Msa1211550	0.879211	1.499376e-69	-8.615850e-47
Msa0531430	Msa1217860	0.812998	3.197786e-51	-8.615850e-47
Msa0531430	Msa1217940	0.854809	9.608199e-62	-8.615850e-47
Msa0531430	Msa1218480	0.850692	1.440474e-60	-8.615850e-47
Msa0531430	Msa1218600	0.810049	1.398489e-50	-8.615850e-47
Msa0531430	Msa1219260	0.880035	7.644303e-70	-8.615850e-47
Msa0531430	Msa1227950	0.838212	3.289247e-57	-8.615850e-47
Msa0531430	Msa1227970	0.847403	1.182448e-59	-8.615850e-47
Msa0531430	Msa1254700	0.853732	1.967122e-61	-8.615850e-47
Msa0531430	Msa1255040	-0.812518	4.072533e-51	-8.615850e-47
Msa0531430	Msa1255280	0.881244	2.819752e-70	-8.615850e-47
Msa0531430	Msa1258050	0.869490	2.978161e-66	-8.615850e-47
Msa0531430	Msa1266960	0.881103	3.170282e-70	-8.615850e-47
Msa0531430	Msa1275540	0.802861	4.589877e-49	-8.615850e-47
Msa0531430	Msa1289280	0.812132	4.943264e-51	-8.615850e-47
Msa0531430	Msa1291870	0.832878	7.352793e-56	-8.615850e-47
Msa0531430	Msa1296960	-0.809469	1.863790e-50	-8.615850e-47
Msa0531430	Msa1308130	0.805689	1.182699e-49	-8.615850e-47
Msa0531430	Msa1329920	0.815515	8.884730e-52	-8.615850e-47
Msa0531430	Msa1331910	0.801803	7.576595e-49	-8.615850e-47
Msa0531430	Msa1339940	0.866543	2.640210e-65	-8.615850e-47
Msa0531430	Msa1342430	0.822947	1.803297e-53	-8.615850e-47
Msa0531430	Msa1345420	0.834464	2.951671e-56	-8.615850e-47
Msa0531430	Msa1356440	0.801711	7.916653e-49	-8.615850e-47
Msa0531430	Msa1369700	0.880615	4.744883e-70	-8.615850e-47
Msa0531430	Msa1385670	0.804263	2.348831e-49	-8.615850e-47
Msa0531430	Msa1395870	0.849874	2.443341e-60	-8.615850e-47
Msa0531430	Msa1397250	0.875235	3.616785e-68	-8.615850e-47
Msa0531430	Msa1397340	0.812872	3.407409e-51	-8.615850e-47
Msa0531430	Msa1399560	0.882092	1.391472e-70	-8.615850e-47
Msa0531430	Msa1401150	0.868636	5.633473e-66	-8.615850e-47
Msa0531430	Msa1405180	0.802716	4.915446e-49	-8.615850e-47
Msa0531430	Msa1423450	0.810082	1.375612e-50	-8.615850e-47
Msa0531430	Msa1437190	0.893618	5.315292e-75	-8.615850e-47
Msa0531430	Msa1439960	0.804723	1.883494e-49	-8.615850e-47
Msa0531430	Msa1440340	0.849463	3.182709e-60	-8.615850e-47
Msa0531430	Msa1443840	0.888265	6.884256e-73	-8.615850e-47
Msa0531430	Msa1449730	0.838979	2.084512e-57	-8.615850e-47
Msa0531430	Msa1452060	0.867761	1.078089e-65	-8.615850e-47
Msa0531430	Msa1460380	0.895987	5.680063e-76	-8.615850e-47
Msa0531430	Msa1460890	0.829781	4.248603e-55	-8.615850e-47
Msa0531430	Msa1463670	0.806992	6.283712e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0531430	MtrunA17_Chr4g0004451	92.216	167	13	0	1	167	1	167	3.12e-113	320
Msa0531430	MtrunA17_Chr2g0331861	38.462	156	93	2	34	188	48	201	1.31e-35	124
Msa0531430	MtrunA17_Chr6g0485381	29.412	170	109	4	23	187	64	227	3.38e-19	82.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0531430	AT1G52330.1	36.686	169	104	2	20	187	45	211	1.31e-33	119
Msa0531430	AT4G13270.1	34.659	176	110	3	16	190	44	215	4.60e-30	110
Msa0531430	AT1G52330.2	35.570	149	95	1	15	162	40	188	7.03e-27	102

Find 65 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATAATACCTTGAAAATATT+AGG	0.189816	4_1:+5642876	None:intergenic
TTTATACTTTGAATAATAAA+AGG	0.232047	4_1:-5641785	Msa0531430:three_prime_UTR
ATTTCAATTTCTGGGTTTAA+TGG	0.237479	4_1:+5643245	None:intergenic
TGTTTGGGGAGCTTGAGTTT+GGG	0.259099	4_1:-5643013	Msa0531430:CDS
GTGTTTGGGGAGCTTGAGTT+TGG	0.299830	4_1:-5643014	Msa0531430:CDS
TGGGGTTCAGAACATGTGTT+TGG	0.308086	4_1:-5643029	Msa0531430:CDS
GATGTTGTGTCTTCCTATTA+TGG	0.309006	4_1:-5643313	Msa0531430:CDS
AAAACTATCATGTGAGGTTT+TGG	0.312823	4_1:-5641979	Msa0531430:CDS
GGGGTTCAGAACATGTGTTT+GGG	0.324110	4_1:-5643028	Msa0531430:CDS
GTGGTATAACGAGGTAGTTT+TGG	0.338427	4_1:+5643336	None:intergenic
GGGTTGGCACGTGAAGGGTT+GGG	0.340777	4_1:-5643048	Msa0531430:CDS
GTTGAAGTTGTGGGAAATCT+TGG	0.341989	4_1:-5642918	Msa0531430:CDS
TTAGAAACACTATCCATAAT+AGG	0.345966	4_1:+5643300	None:intergenic
GGTTGGCACGTGAAGGGTTG+GGG	0.363964	4_1:-5643047	Msa0531430:CDS
ATAATACCTTGAAAATATTA+GGG	0.371032	4_1:+5642877	None:intergenic
AGGTCGTATAACAATCTCTT+TGG	0.403577	4_1:-5641871	Msa0531430:three_prime_UTR
GGGGTTGGCACGTGAAGGGT+TGG	0.423435	4_1:-5643049	Msa0531430:CDS
ATTAAACCCAGAAATTGAAA+TGG	0.437917	4_1:-5643243	Msa0531430:CDS
GTTTAATTTATATACATTGT+CGG	0.461755	4_1:-5641632	Msa0531430:three_prime_UTR
AGCTTGGTCACGTGGAAACT+AGG	0.465057	4_1:-5643070	Msa0531430:CDS
CAGCACTTAACGGTGGTAAC+GGG	0.465549	4_1:+5643189	None:intergenic
ACATAGCCATTGTGTTGAAA+AGG	0.465964	4_1:-5641931	Msa0531430:CDS
GTTTCTAACATTGTGTATAA+CGG	0.469131	4_1:-5643285	Msa0531430:CDS
CATACTGCTGTTGAAGTTGT+GGG	0.471858	4_1:-5642927	Msa0531430:CDS
GCTTGGTCACGTGGAAACTA+GGG	0.477209	4_1:-5643069	Msa0531430:CDS
GTTTGGGGAGCTTGAGTTTG+GGG	0.477621	4_1:-5643012	Msa0531430:CDS
GGGACTTCCTTCTGCAGATG+TGG	0.484731	4_1:-5642991	Msa0531430:CDS
AATGACACATCAGCACTTAA+CGG	0.520732	4_1:+5643179	None:intergenic
AACTAGGGGTTGGCACGTGA+AGG	0.522677	4_1:-5643054	Msa0531430:CDS
TCAGCACTTAACGGTGGTAA+CGG	0.531723	4_1:+5643188	None:intergenic
TTTGGGGAGCTTGAGTTTGG+GGG	0.538897	4_1:-5643011	Msa0531430:CDS
AATGGCTATGTACAATGGTA+TGG	0.542658	4_1:+5641943	None:intergenic
TTATAGACCTGACCTTGGTC+AGG	0.543532	4_1:-5641891	Msa0531430:exon
TCATACTGCTGTTGAAGTTG+TGG	0.544382	4_1:-5642928	Msa0531430:CDS
TATACGACCTGACCAAGGTC+AGG	0.561162	4_1:+5641884	None:intergenic
GCAGGATCTTGCTAAGGCTA+GGG	0.562521	4_1:-5642958	Msa0531430:CDS
TGCAGGATCTTGCTAAGGCT+AGG	0.563770	4_1:-5642959	Msa0531430:CDS
AAGTATCGTGGGCATAAGCT+TGG	0.565318	4_1:-5643086	Msa0531430:CDS
GACCAAGGTCAGGTCTATAA+CGG	0.568391	4_1:+5641894	None:intergenic
TTTGATGCAGGATCTTGCTA+AGG	0.569783	4_1:-5642964	Msa0531430:CDS
CAACTAGATGAGGTTGATGT+TGG	0.578124	4_1:-5643113	Msa0531430:CDS
TTTCTGGGTTTAATGGCCAT+AGG	0.582895	4_1:+5643252	None:intergenic
GAAAATATTAGGGAAGTGAA+AGG	0.584040	4_1:+5642887	None:intergenic
GGGTTCAGAACATGTGTTTG+GGG	0.587098	4_1:-5643027	Msa0531430:CDS
ACTAGGGGTTGGCACGTGAA+GGG	0.587913	4_1:-5643053	Msa0531430:CDS
ATAGGTAAAACTATCATGTG+AGG	0.588436	4_1:-5641985	Msa0531430:intron
ATGGTGCAAAGTGCAAAAGA+TGG	0.591063	4_1:-5641725	Msa0531430:three_prime_UTR
AGATGTGGCACATTTGATGC+AGG	0.604705	4_1:-5642976	Msa0531430:CDS
GATGTTGGCATCAAGTATCG+TGG	0.608808	4_1:-5643098	Msa0531430:CDS
TGGGCATAAGCTTGGTCACG+TGG	0.610574	4_1:-5643078	Msa0531430:CDS
AAATGTGCCACATCTGCAGA+AGG	0.617429	4_1:+5642984	None:intergenic
ATGTTGGCATCAAGTATCGT+GGG	0.619053	4_1:-5643097	Msa0531430:CDS
AACCGTTAAAATTCACAACA+AGG	0.623265	4_1:-5643150	Msa0531430:CDS
AACACAATGGCTATGTACAA+TGG	0.629727	4_1:+5641938	None:intergenic
GTCACGTGGAAACTAGGGGT+TGG	0.637913	4_1:-5643064	Msa0531430:CDS
CTTTGAATAATAAAAGGCGA+AGG	0.643879	4_1:-5641779	Msa0531430:three_prime_UTR
CACAACATCGTGGTATAACG+AGG	0.644266	4_1:+5643327	None:intergenic
AATGTTCTGCAATGCAACCA+TGG	0.646791	4_1:-5641744	Msa0531430:three_prime_UTR
AACCGTTATAGACCTGACCT+TGG	0.648676	4_1:-5641896	Msa0531430:exon
CTTGGTCACGTGGAAACTAG+GGG	0.662536	4_1:-5643068	Msa0531430:CDS
GTACTGGATGCAACTAGATG+AGG	0.664962	4_1:-5643123	Msa0531430:CDS
TGTATACATATTGATCGATG+AGG	0.665898	4_1:+5641698	None:intergenic
ATTGTTATACGACCTGACCA+AGG	0.713917	4_1:+5641879	None:intergenic
GACACATCAGCACTTAACGG+TGG	0.729489	4_1:+5643182	None:intergenic
AATAGGAAGACACAACATCG+TGG	0.762664	4_1:+5643317	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTTATACTTTGAATAATAAA+AGG	-	chr4_1:5643217-5643236	Msa0531430:CDS	10.0%
!!	TTTATACTTTGAATAATAAA+AGG	-	chr4_1:5643217-5643236	Msa0531430:CDS	10.0%
!!	ATAATACCTTGAAAATATTA+GGG	+	chr4_1:5642128-5642147	None:intergenic	15.0%
!!	TATAATACCTTGAAAATATT+AGG	+	chr4_1:5642129-5642148	None:intergenic	15.0%
!!!	CATTCTTTTATTATTTAACA+TGG	-	chr4_1:5642922-5642941	Msa0531430:CDS	15.0%
!!!	TTTGTTTTTCATGTTTTAAT+AGG	-	chr4_1:5642999-5643018	Msa0531430:CDS	15.0%
!!!	GTTTAATTTATATACATTGT+CGG	-	chr4_1:5643370-5643389	Msa0531430:exon	15.0%
!!!	TTTTTTCATTATACAATAGA+TGG	-	chr4_1:5643400-5643419	Msa0531430:five_prime_UTR	15.0%
!!	ATAATACCTTGAAAATATTA+GGG	+	chr4_1:5642128-5642147	None:intergenic	15.0%
!!	TATAATACCTTGAAAATATT+AGG	+	chr4_1:5642129-5642148	None:intergenic	15.0%
!!!	CATTCTTTTATTATTTAACA+TGG	-	chr4_1:5642922-5642941	Msa0531430:CDS	15.0%
!!!	TTTGTTTTTCATGTTTTAAT+AGG	-	chr4_1:5642999-5643018	Msa0531430:CDS	15.0%
!!!	GTTTAATTTATATACATTGT+CGG	-	chr4_1:5643370-5643389	Msa0531430:exon	15.0%
!!!	TTTTTTCATTATACAATAGA+TGG	-	chr4_1:5643400-5643419	Msa0531430:five_prime_UTR	15.0%
!!!	AATTTTCCATTTCAATTTCT+GGG	+	chr4_1:5641768-5641787	None:intergenic	20.0%
!!!	AAATTTTCCATTTCAATTTC+TGG	+	chr4_1:5641769-5641788	None:intergenic	20.0%
!!!	TAGTAACCGATTTTAAAATT+CGG	-	chr4_1:5642295-5642314	Msa0531430:intron	20.0%
!!	AAAACAAAATCCAAGTTATT+TGG	+	chr4_1:5642987-5643006	None:intergenic	20.0%
!!!	AATTTTCCATTTCAATTTCT+GGG	+	chr4_1:5641768-5641787	None:intergenic	20.0%
!!!	AAATTTTCCATTTCAATTTC+TGG	+	chr4_1:5641769-5641788	None:intergenic	20.0%
!!!	TAGTAACCGATTTTAAAATT+CGG	-	chr4_1:5642295-5642314	Msa0531430:intron	20.0%
!!	AAAACAAAATCCAAGTTATT+TGG	+	chr4_1:5642987-5643006	None:intergenic	20.0%
!	TTAGAAACACTATCCATAAT+AGG	+	chr4_1:5641705-5641724	None:intergenic	25.0%
!	GTTTCTAACATTGTGTATAA+CGG	-	chr4_1:5641717-5641736	Msa0531430:three_prime_UTR	25.0%
!!	ATTTCAATTTCTGGGTTTAA+TGG	+	chr4_1:5641760-5641779	None:intergenic	25.0%
!	ATTAAACCCAGAAATTGAAA+TGG	-	chr4_1:5641759-5641778	Msa0531430:three_prime_UTR	25.0%
!!!	AACCTTGTTGTGAATTTTAA+CGG	+	chr4_1:5641857-5641876	None:intergenic	25.0%
!!	ATTTTCATCATCCTTCAATT+AGG	-	chr4_1:5642154-5642173	Msa0531430:intron	25.0%
!!	TTTTCATCATCCTTCAATTA+GGG	-	chr4_1:5642155-5642174	Msa0531430:intron	25.0%
!!!	CATCAACCGAATTTTAAAAT+CGG	+	chr4_1:5642304-5642323	None:intergenic	25.0%
!	AAAATCAATTCTCATTTCCA+TGG	-	chr4_1:5642604-5642623	Msa0531430:intron	25.0%
!!!	TTTTTTTTTTTGTGGTGTCT+GGG	+	chr4_1:5642810-5642829	None:intergenic	25.0%
!!!	ATTTTTTTTTTTGTGGTGTC+TGG	+	chr4_1:5642811-5642830	None:intergenic	25.0%
!!!	GCTTGTGATTTTTTTTTTTG+TGG	+	chr4_1:5642818-5642837	None:intergenic	25.0%
!	AGAATGAAATTCGTCTATAA+AGG	+	chr4_1:5642908-5642927	None:intergenic	25.0%
!	AAAGTGATAAAGGAAACAAA+TGG	+	chr4_1:5642964-5642983	None:intergenic	25.0%
!	AGTTATTTGGAAAGTGATAA+AGG	+	chr4_1:5642974-5642993	None:intergenic	25.0%
!	TTATCACTTTCCAAATAACT+TGG	-	chr4_1:5642974-5642993	Msa0531430:CDS	25.0%
!	ATTTGAGTATGAGAAGATTA+CGG	+	chr4_1:5641596-5641615	None:intergenic	25.0%
!	TTAGAAACACTATCCATAAT+AGG	+	chr4_1:5641705-5641724	None:intergenic	25.0%
!	GTTTCTAACATTGTGTATAA+CGG	-	chr4_1:5641717-5641736	Msa0531430:three_prime_UTR	25.0%
!!	ATTTCAATTTCTGGGTTTAA+TGG	+	chr4_1:5641760-5641779	None:intergenic	25.0%
!	ATTAAACCCAGAAATTGAAA+TGG	-	chr4_1:5641759-5641778	Msa0531430:three_prime_UTR	25.0%
!!!	AACCTTGTTGTGAATTTTAA+CGG	+	chr4_1:5641857-5641876	None:intergenic	25.0%
!!	ATTTTCATCATCCTTCAATT+AGG	-	chr4_1:5642154-5642173	Msa0531430:intron	25.0%
!!	TTTTCATCATCCTTCAATTA+GGG	-	chr4_1:5642155-5642174	Msa0531430:intron	25.0%
!!!	CATCAACCGAATTTTAAAAT+CGG	+	chr4_1:5642304-5642323	None:intergenic	25.0%
!	AAAATCAATTCTCATTTCCA+TGG	-	chr4_1:5642604-5642623	Msa0531430:intron	25.0%
!!!	TTTTTTTTTTTGTGGTGTCT+GGG	+	chr4_1:5642810-5642829	None:intergenic	25.0%
!!!	ATTTTTTTTTTTGTGGTGTC+TGG	+	chr4_1:5642811-5642830	None:intergenic	25.0%
!!!	GCTTGTGATTTTTTTTTTTG+TGG	+	chr4_1:5642818-5642837	None:intergenic	25.0%
!	AGAATGAAATTCGTCTATAA+AGG	+	chr4_1:5642908-5642927	None:intergenic	25.0%
!	AAAGTGATAAAGGAAACAAA+TGG	+	chr4_1:5642964-5642983	None:intergenic	25.0%
!	AGTTATTTGGAAAGTGATAA+AGG	+	chr4_1:5642974-5642993	None:intergenic	25.0%
!	TTATCACTTTCCAAATAACT+TGG	-	chr4_1:5642974-5642993	Msa0531430:CDS	25.0%
!!!	TCTTGTTTTGAGTATGTCAT+TGG	+	chr4_1:5641643-5641662	None:intergenic	30.0%
	AACCGTTAAAATTCACAACA+AGG	-	chr4_1:5641852-5641871	Msa0531430:three_prime_UTR	30.0%
	GAAAATATTAGGGAAGTGAA+AGG	+	chr4_1:5642118-5642137	None:intergenic	30.0%
!	TCACTTCCCTAATATTTTCA+AGG	-	chr4_1:5642119-5642138	Msa0531430:intron	30.0%
!	TTTTCACTTGTACCATCAAA+CGG	+	chr4_1:5642382-5642401	None:intergenic	30.0%
!!	AGATAATCAAGAGCATTTCA+TGG	+	chr4_1:5642568-5642587	None:intergenic	30.0%
	AATTCTCATTTCCATGGATT+TGG	-	chr4_1:5642610-5642629	Msa0531430:intron	30.0%
	TAATCATCTCCCATTTCTTA+TGG	+	chr4_1:5642663-5642682	None:intergenic	30.0%
	AAAAAGAAAGAGACATTGAG+TGG	-	chr4_1:5642682-5642701	Msa0531430:intron	30.0%
	AAAAGAAAGAGACATTGAGT+GGG	-	chr4_1:5642683-5642702	Msa0531430:intron	30.0%
	GACAATGCATAATATATGCA+AGG	-	chr4_1:5642770-5642789	Msa0531430:intron	30.0%
	TGCATAATATATGCAAGGTT+TGG	-	chr4_1:5642775-5642794	Msa0531430:intron	30.0%
	GCATAATATATGCAAGGTTT+GGG	-	chr4_1:5642776-5642795	Msa0531430:intron	30.0%
	CATAATATATGCAAGGTTTG+GGG	-	chr4_1:5642777-5642796	Msa0531430:intron	30.0%
!!!	TTTTTTTTTTGTGGTGTCTG+GGG	+	chr4_1:5642809-5642828	None:intergenic	30.0%
	ATAGGTAAAACTATCATGTG+AGG	-	chr4_1:5643017-5643036	Msa0531430:CDS	30.0%
!	AAAACTATCATGTGAGGTTT+TGG	-	chr4_1:5643023-5643042	Msa0531430:CDS	30.0%
	CTTTGAATAATAAAAGGCGA+AGG	-	chr4_1:5643223-5643242	Msa0531430:CDS	30.0%
	TGTATACATATTGATCGATG+AGG	+	chr4_1:5643307-5643326	None:intergenic	30.0%
	TTTGAGTATGAGAAGATTAC+GGG	+	chr4_1:5641595-5641614	None:intergenic	30.0%
!!!	TCTTGTTTTGAGTATGTCAT+TGG	+	chr4_1:5641643-5641662	None:intergenic	30.0%
	AACCGTTAAAATTCACAACA+AGG	-	chr4_1:5641852-5641871	Msa0531430:three_prime_UTR	30.0%
	GAAAATATTAGGGAAGTGAA+AGG	+	chr4_1:5642118-5642137	None:intergenic	30.0%
!	TCACTTCCCTAATATTTTCA+AGG	-	chr4_1:5642119-5642138	Msa0531430:intron	30.0%
!	TTTTCACTTGTACCATCAAA+CGG	+	chr4_1:5642382-5642401	None:intergenic	30.0%
!!	AGATAATCAAGAGCATTTCA+TGG	+	chr4_1:5642568-5642587	None:intergenic	30.0%
	AATTCTCATTTCCATGGATT+TGG	-	chr4_1:5642610-5642629	Msa0531430:intron	30.0%
	TAATCATCTCCCATTTCTTA+TGG	+	chr4_1:5642663-5642682	None:intergenic	30.0%
	AAAAAGAAAGAGACATTGAG+TGG	-	chr4_1:5642682-5642701	Msa0531430:intron	30.0%
	AAAAGAAAGAGACATTGAGT+GGG	-	chr4_1:5642683-5642702	Msa0531430:intron	30.0%
	GACAATGCATAATATATGCA+AGG	-	chr4_1:5642770-5642789	Msa0531430:intron	30.0%
	TGCATAATATATGCAAGGTT+TGG	-	chr4_1:5642775-5642794	Msa0531430:intron	30.0%
	GCATAATATATGCAAGGTTT+GGG	-	chr4_1:5642776-5642795	Msa0531430:intron	30.0%
	CATAATATATGCAAGGTTTG+GGG	-	chr4_1:5642777-5642796	Msa0531430:intron	30.0%
!!!	TTTTTTTTTTGTGGTGTCTG+GGG	+	chr4_1:5642809-5642828	None:intergenic	30.0%
	ATAGGTAAAACTATCATGTG+AGG	-	chr4_1:5643017-5643036	Msa0531430:CDS	30.0%
!	AAAACTATCATGTGAGGTTT+TGG	-	chr4_1:5643023-5643042	Msa0531430:CDS	30.0%
	CTTTGAATAATAAAAGGCGA+AGG	-	chr4_1:5643223-5643242	Msa0531430:CDS	30.0%
	TGTATACATATTGATCGATG+AGG	+	chr4_1:5643307-5643326	None:intergenic	30.0%
!	TGGTATAACGAGGTAGTTTT+GGG	+	chr4_1:5641668-5641687	None:intergenic	35.0%
	GATGTTGTGTCTTCCTATTA+TGG	-	chr4_1:5641689-5641708	Msa0531430:three_prime_UTR	35.0%
	AATGACACATCAGCACTTAA+CGG	+	chr4_1:5641826-5641845	None:intergenic	35.0%
!!	TTCACAACAAGGTTTTGTAC+TGG	-	chr4_1:5641863-5641882	Msa0531430:three_prime_UTR	35.0%
	AACAAGTGAAAAGGCCAAAT+TGG	-	chr4_1:5642186-5642205	Msa0531430:intron	35.0%
	CCGGTTGCTAATAATGTTAA+CGG	+	chr4_1:5642224-5642243	None:intergenic	35.0%
	CCGTTAACATTATTAGCAAC+CGG	-	chr4_1:5642221-5642240	Msa0531430:intron	35.0%
	TTAACATTATTAGCAACCGG+TGG	-	chr4_1:5642224-5642243	Msa0531430:intron	35.0%
!!!	TTTGAAGGCATTTTGCAAAC+CGG	-	chr4_1:5642247-5642266	Msa0531430:intron	35.0%
	ACCGCATGACTGAAATAATT+CGG	-	chr4_1:5642329-5642348	Msa0531430:intron	35.0%
	ACCGAATTATTTCAGTCATG+CGG	+	chr4_1:5642333-5642352	None:intergenic	35.0%
!	GTTTGATGGTACAAGTGAAA+AGG	-	chr4_1:5642381-5642400	Msa0531430:intron	35.0%
!	TTTTGCTGAGCCATAAGAAA+TGG	-	chr4_1:5642650-5642669	Msa0531430:intron	35.0%
	TTTGCTGAGCCATAAGAAAT+GGG	-	chr4_1:5642651-5642670	Msa0531430:intron	35.0%
	GTGATAAAGGAAACAAATGG+AGG	+	chr4_1:5642961-5642980	None:intergenic	35.0%
	AATGGCTATGTACAATGGTA+TGG	+	chr4_1:5643062-5643081	None:intergenic	35.0%
	AACACAATGGCTATGTACAA+TGG	+	chr4_1:5643067-5643086	None:intergenic	35.0%
	ACATAGCCATTGTGTTGAAA+AGG	-	chr4_1:5643071-5643090	Msa0531430:CDS	35.0%
!	GCTTTACCTTTTCAACACAA+TGG	+	chr4_1:5643080-5643099	None:intergenic	35.0%
	AGGTCGTATAACAATCTCTT+TGG	-	chr4_1:5643131-5643150	Msa0531430:CDS	35.0%
!	TGGTATAACGAGGTAGTTTT+GGG	+	chr4_1:5641668-5641687	None:intergenic	35.0%
	GATGTTGTGTCTTCCTATTA+TGG	-	chr4_1:5641689-5641708	Msa0531430:three_prime_UTR	35.0%
	AATGACACATCAGCACTTAA+CGG	+	chr4_1:5641826-5641845	None:intergenic	35.0%
!!	TTCACAACAAGGTTTTGTAC+TGG	-	chr4_1:5641863-5641882	Msa0531430:three_prime_UTR	35.0%
	AACAAGTGAAAAGGCCAAAT+TGG	-	chr4_1:5642186-5642205	Msa0531430:intron	35.0%
	CCGGTTGCTAATAATGTTAA+CGG	+	chr4_1:5642224-5642243	None:intergenic	35.0%
	CCGTTAACATTATTAGCAAC+CGG	-	chr4_1:5642221-5642240	Msa0531430:intron	35.0%
	TTAACATTATTAGCAACCGG+TGG	-	chr4_1:5642224-5642243	Msa0531430:intron	35.0%
!!!	TTTGAAGGCATTTTGCAAAC+CGG	-	chr4_1:5642247-5642266	Msa0531430:intron	35.0%
	ACCGCATGACTGAAATAATT+CGG	-	chr4_1:5642329-5642348	Msa0531430:intron	35.0%
	ACCGAATTATTTCAGTCATG+CGG	+	chr4_1:5642333-5642352	None:intergenic	35.0%
!	GTTTGATGGTACAAGTGAAA+AGG	-	chr4_1:5642381-5642400	Msa0531430:intron	35.0%
!	TTTTGCTGAGCCATAAGAAA+TGG	-	chr4_1:5642650-5642669	Msa0531430:intron	35.0%
	TTTGCTGAGCCATAAGAAAT+GGG	-	chr4_1:5642651-5642670	Msa0531430:intron	35.0%
	GTGATAAAGGAAACAAATGG+AGG	+	chr4_1:5642961-5642980	None:intergenic	35.0%
	AATGGCTATGTACAATGGTA+TGG	+	chr4_1:5643062-5643081	None:intergenic	35.0%
	AACACAATGGCTATGTACAA+TGG	+	chr4_1:5643067-5643086	None:intergenic	35.0%
	ACATAGCCATTGTGTTGAAA+AGG	-	chr4_1:5643071-5643090	Msa0531430:CDS	35.0%
!	GCTTTACCTTTTCAACACAA+TGG	+	chr4_1:5643080-5643099	None:intergenic	35.0%
	AGGTCGTATAACAATCTCTT+TGG	-	chr4_1:5643131-5643150	Msa0531430:CDS	35.0%
!	GTGGTATAACGAGGTAGTTT+TGG	+	chr4_1:5641669-5641688	None:intergenic	40.0%
	AATAGGAAGACACAACATCG+TGG	+	chr4_1:5641688-5641707	None:intergenic	40.0%
!!!	TAACGGCGTTGTTTTTCCTA+TGG	-	chr4_1:5641734-5641753	Msa0531430:three_prime_UTR	40.0%
	TTTCTGGGTTTAATGGCCAT+AGG	+	chr4_1:5641753-5641772	None:intergenic	40.0%
!!	CAACTAGATGAGGTTGATGT+TGG	-	chr4_1:5641889-5641908	Msa0531430:exon	40.0%
!	ATGTTGGCATCAAGTATCGT+GGG	-	chr4_1:5641905-5641924	Msa0531430:exon	40.0%
	TTTGATGCAGGATCTTGCTA+AGG	-	chr4_1:5642038-5642057	Msa0531430:intron	40.0%
	TCATACTGCTGTTGAAGTTG+TGG	-	chr4_1:5642074-5642093	Msa0531430:intron	40.0%
	CATACTGCTGTTGAAGTTGT+GGG	-	chr4_1:5642075-5642094	Msa0531430:intron	40.0%
	GTTGAAGTTGTGGGAAATCT+TGG	-	chr4_1:5642084-5642103	Msa0531430:intron	40.0%
	TTTAGTCGGTCCCTAATTGA+AGG	+	chr4_1:5642168-5642187	None:intergenic	40.0%
	GACCGACTAAACAAGTGAAA+AGG	-	chr4_1:5642177-5642196	Msa0531430:intron	40.0%
!	GGCCTTTTCACTTGTTTAGT+CGG	+	chr4_1:5642182-5642201	None:intergenic	40.0%
	CTAGCGATCTATTTAGTGTC+CGG	+	chr4_1:5642269-5642288	None:intergenic	40.0%
	TAGTGTATACCACCGTTTGA+TGG	-	chr4_1:5642367-5642386	Msa0531430:intron	40.0%
	CTCAGCAAAACTATTCAAGG+TGG	+	chr4_1:5642640-5642659	None:intergenic	40.0%
	TGGCTCAGCAAAACTATTCA+AGG	+	chr4_1:5642643-5642662	None:intergenic	40.0%
	AACCAACTGAGTTAAGCTCA+CGG	+	chr4_1:5642748-5642767	None:intergenic	40.0%
	TGAGCTTAACTCAGTTGGTT+GGG	-	chr4_1:5642748-5642767	Msa0531430:intron	40.0%
	CACAAGCTCACAACTTCTAT+CGG	-	chr4_1:5642831-5642850	Msa0531430:intron	40.0%
	GCACAATGTAGCGACTATAA+AGG	+	chr4_1:5642864-5642883	None:intergenic	40.0%
	ATTGTTATACGACCTGACCA+AGG	+	chr4_1:5643126-5643145	None:intergenic	40.0%
	AATGTTCTGCAATGCAACCA+TGG	-	chr4_1:5643258-5643277	Msa0531430:CDS	40.0%
!	ATCTTTTGCACTTTGCACCA+TGG	+	chr4_1:5643278-5643297	None:intergenic	40.0%
	ATGGTGCAAAGTGCAAAAGA+TGG	-	chr4_1:5643277-5643296	Msa0531430:CDS	40.0%
!	GTGGTATAACGAGGTAGTTT+TGG	+	chr4_1:5641669-5641688	None:intergenic	40.0%
	AATAGGAAGACACAACATCG+TGG	+	chr4_1:5641688-5641707	None:intergenic	40.0%
!!!	TAACGGCGTTGTTTTTCCTA+TGG	-	chr4_1:5641734-5641753	Msa0531430:three_prime_UTR	40.0%
	TTTCTGGGTTTAATGGCCAT+AGG	+	chr4_1:5641753-5641772	None:intergenic	40.0%
!!	CAACTAGATGAGGTTGATGT+TGG	-	chr4_1:5641889-5641908	Msa0531430:exon	40.0%
!	ATGTTGGCATCAAGTATCGT+GGG	-	chr4_1:5641905-5641924	Msa0531430:exon	40.0%
	TTTGATGCAGGATCTTGCTA+AGG	-	chr4_1:5642038-5642057	Msa0531430:intron	40.0%
	TCATACTGCTGTTGAAGTTG+TGG	-	chr4_1:5642074-5642093	Msa0531430:intron	40.0%
	CATACTGCTGTTGAAGTTGT+GGG	-	chr4_1:5642075-5642094	Msa0531430:intron	40.0%
	GTTGAAGTTGTGGGAAATCT+TGG	-	chr4_1:5642084-5642103	Msa0531430:intron	40.0%
	TTTAGTCGGTCCCTAATTGA+AGG	+	chr4_1:5642168-5642187	None:intergenic	40.0%
	GACCGACTAAACAAGTGAAA+AGG	-	chr4_1:5642177-5642196	Msa0531430:intron	40.0%
!	GGCCTTTTCACTTGTTTAGT+CGG	+	chr4_1:5642182-5642201	None:intergenic	40.0%
	CTAGCGATCTATTTAGTGTC+CGG	+	chr4_1:5642269-5642288	None:intergenic	40.0%
	TAGTGTATACCACCGTTTGA+TGG	-	chr4_1:5642367-5642386	Msa0531430:intron	40.0%
	CTCAGCAAAACTATTCAAGG+TGG	+	chr4_1:5642640-5642659	None:intergenic	40.0%
	TGGCTCAGCAAAACTATTCA+AGG	+	chr4_1:5642643-5642662	None:intergenic	40.0%
	AACCAACTGAGTTAAGCTCA+CGG	+	chr4_1:5642748-5642767	None:intergenic	40.0%
	TGAGCTTAACTCAGTTGGTT+GGG	-	chr4_1:5642748-5642767	Msa0531430:intron	40.0%
	CACAAGCTCACAACTTCTAT+CGG	-	chr4_1:5642831-5642850	Msa0531430:intron	40.0%
	GCACAATGTAGCGACTATAA+AGG	+	chr4_1:5642864-5642883	None:intergenic	40.0%
	ATTGTTATACGACCTGACCA+AGG	+	chr4_1:5643126-5643145	None:intergenic	40.0%
	AATGTTCTGCAATGCAACCA+TGG	-	chr4_1:5643258-5643277	Msa0531430:CDS	40.0%
!	ATCTTTTGCACTTTGCACCA+TGG	+	chr4_1:5643278-5643297	None:intergenic	40.0%
	ATGGTGCAAAGTGCAAAAGA+TGG	-	chr4_1:5643277-5643296	Msa0531430:CDS	40.0%
	CACAACATCGTGGTATAACG+AGG	+	chr4_1:5641678-5641697	None:intergenic	45.0%
	TCAGCACTTAACGGTGGTAA+CGG	+	chr4_1:5641817-5641836	None:intergenic	45.0%
	GTACTGGATGCAACTAGATG+AGG	-	chr4_1:5641879-5641898	Msa0531430:three_prime_UTR	45.0%
!	GATGTTGGCATCAAGTATCG+TGG	-	chr4_1:5641904-5641923	Msa0531430:exon	45.0%
!	AAGTATCGTGGGCATAAGCT+TGG	-	chr4_1:5641916-5641935	Msa0531430:CDS	45.0%
	TGGGGTTCAGAACATGTGTT+TGG	-	chr4_1:5641973-5641992	Msa0531430:CDS	45.0%
	GGGGTTCAGAACATGTGTTT+GGG	-	chr4_1:5641974-5641993	Msa0531430:CDS	45.0%
	GGGTTCAGAACATGTGTTTG+GGG	-	chr4_1:5641975-5641994	Msa0531430:CDS	45.0%
	TGTTTGGGGAGCTTGAGTTT+GGG	-	chr4_1:5641989-5642008	Msa0531430:intron	45.0%
	AAATGTGCCACATCTGCAGA+AGG	+	chr4_1:5642021-5642040	None:intergenic	45.0%
	AGATGTGGCACATTTGATGC+AGG	-	chr4_1:5642026-5642045	Msa0531430:intron	45.0%
	GGCCAAATTGGTCGCTAAAT+TGG	-	chr4_1:5642198-5642217	Msa0531430:intron	45.0%
	GGCCAATTTAGCGACCAATT+TGG	+	chr4_1:5642203-5642222	None:intergenic	45.0%
	ATTAGCAACCGGTGGTTTGA+AGG	-	chr4_1:5642232-5642251	Msa0531430:intron	45.0%
	GCAAAATGCCTTCAAACCAC+CGG	+	chr4_1:5642243-5642262	None:intergenic	45.0%
	CGGACACTAAATAGATCGCT+AGG	-	chr4_1:5642267-5642286	Msa0531430:intron	45.0%
	TCACTTGTACCATCAAACGG+TGG	+	chr4_1:5642379-5642398	None:intergenic	45.0%
	AAGGTGGAGATCCAAATCCA+TGG	+	chr4_1:5642624-5642643	None:intergenic	45.0%
	ACCAACTGAGTTAAGCTCAC+GGG	+	chr4_1:5642747-5642766	None:intergenic	45.0%
	GTGAGCTTAACTCAGTTGGT+TGG	-	chr4_1:5642747-5642766	Msa0531430:intron	45.0%
	AACCGTTATAGACCTGACCT+TGG	-	chr4_1:5643106-5643125	Msa0531430:CDS	45.0%
	GACCAAGGTCAGGTCTATAA+CGG	+	chr4_1:5643111-5643130	None:intergenic	45.0%
	TTATAGACCTGACCTTGGTC+AGG	-	chr4_1:5643111-5643130	Msa0531430:CDS	45.0%
	CACAACATCGTGGTATAACG+AGG	+	chr4_1:5641678-5641697	None:intergenic	45.0%
	TCAGCACTTAACGGTGGTAA+CGG	+	chr4_1:5641817-5641836	None:intergenic	45.0%
	GTACTGGATGCAACTAGATG+AGG	-	chr4_1:5641879-5641898	Msa0531430:three_prime_UTR	45.0%
!	GATGTTGGCATCAAGTATCG+TGG	-	chr4_1:5641904-5641923	Msa0531430:exon	45.0%
!	AAGTATCGTGGGCATAAGCT+TGG	-	chr4_1:5641916-5641935	Msa0531430:CDS	45.0%
	TGGGGTTCAGAACATGTGTT+TGG	-	chr4_1:5641973-5641992	Msa0531430:CDS	45.0%
	GGGGTTCAGAACATGTGTTT+GGG	-	chr4_1:5641974-5641993	Msa0531430:CDS	45.0%
	GGGTTCAGAACATGTGTTTG+GGG	-	chr4_1:5641975-5641994	Msa0531430:CDS	45.0%
	TGTTTGGGGAGCTTGAGTTT+GGG	-	chr4_1:5641989-5642008	Msa0531430:intron	45.0%
	AAATGTGCCACATCTGCAGA+AGG	+	chr4_1:5642021-5642040	None:intergenic	45.0%
	AGATGTGGCACATTTGATGC+AGG	-	chr4_1:5642026-5642045	Msa0531430:intron	45.0%
	GGCCAAATTGGTCGCTAAAT+TGG	-	chr4_1:5642198-5642217	Msa0531430:intron	45.0%
	GGCCAATTTAGCGACCAATT+TGG	+	chr4_1:5642203-5642222	None:intergenic	45.0%
	ATTAGCAACCGGTGGTTTGA+AGG	-	chr4_1:5642232-5642251	Msa0531430:intron	45.0%
	GCAAAATGCCTTCAAACCAC+CGG	+	chr4_1:5642243-5642262	None:intergenic	45.0%
	CGGACACTAAATAGATCGCT+AGG	-	chr4_1:5642267-5642286	Msa0531430:intron	45.0%
	TCACTTGTACCATCAAACGG+TGG	+	chr4_1:5642379-5642398	None:intergenic	45.0%
	AAGGTGGAGATCCAAATCCA+TGG	+	chr4_1:5642624-5642643	None:intergenic	45.0%
	ACCAACTGAGTTAAGCTCAC+GGG	+	chr4_1:5642747-5642766	None:intergenic	45.0%
	GTGAGCTTAACTCAGTTGGT+TGG	-	chr4_1:5642747-5642766	Msa0531430:intron	45.0%
	AACCGTTATAGACCTGACCT+TGG	-	chr4_1:5643106-5643125	Msa0531430:CDS	45.0%
	GACCAAGGTCAGGTCTATAA+CGG	+	chr4_1:5643111-5643130	None:intergenic	45.0%
	TTATAGACCTGACCTTGGTC+AGG	-	chr4_1:5643111-5643130	Msa0531430:CDS	45.0%
	CAGCACTTAACGGTGGTAAC+GGG	+	chr4_1:5641816-5641835	None:intergenic	50.0%
	GACACATCAGCACTTAACGG+TGG	+	chr4_1:5641823-5641842	None:intergenic	50.0%
	AGCTTGGTCACGTGGAAACT+AGG	-	chr4_1:5641932-5641951	Msa0531430:CDS	50.0%
	GCTTGGTCACGTGGAAACTA+GGG	-	chr4_1:5641933-5641952	Msa0531430:CDS	50.0%
	CTTGGTCACGTGGAAACTAG+GGG	-	chr4_1:5641934-5641953	Msa0531430:CDS	50.0%
	GTGTTTGGGGAGCTTGAGTT+TGG	-	chr4_1:5641988-5642007	Msa0531430:intron	50.0%
	GTTTGGGGAGCTTGAGTTTG+GGG	-	chr4_1:5641990-5642009	Msa0531430:intron	50.0%
	TTTGGGGAGCTTGAGTTTGG+GGG	-	chr4_1:5641991-5642010	Msa0531430:intron	50.0%
	TGCAGGATCTTGCTAAGGCT+AGG	-	chr4_1:5642043-5642062	Msa0531430:intron	50.0%
	GCAGGATCTTGCTAAGGCTA+GGG	-	chr4_1:5642044-5642063	Msa0531430:intron	50.0%
	TCCCGTGAGCTTAACTCAGT+TGG	-	chr4_1:5642743-5642762	Msa0531430:intron	50.0%
	TATACGACCTGACCAAGGTC+AGG	+	chr4_1:5643121-5643140	None:intergenic	50.0%
	CAGCACTTAACGGTGGTAAC+GGG	+	chr4_1:5641816-5641835	None:intergenic	50.0%
	GACACATCAGCACTTAACGG+TGG	+	chr4_1:5641823-5641842	None:intergenic	50.0%
	AGCTTGGTCACGTGGAAACT+AGG	-	chr4_1:5641932-5641951	Msa0531430:CDS	50.0%
	GCTTGGTCACGTGGAAACTA+GGG	-	chr4_1:5641933-5641952	Msa0531430:CDS	50.0%
	CTTGGTCACGTGGAAACTAG+GGG	-	chr4_1:5641934-5641953	Msa0531430:CDS	50.0%
	GTGTTTGGGGAGCTTGAGTT+TGG	-	chr4_1:5641988-5642007	Msa0531430:intron	50.0%
	GTTTGGGGAGCTTGAGTTTG+GGG	-	chr4_1:5641990-5642009	Msa0531430:intron	50.0%
	TTTGGGGAGCTTGAGTTTGG+GGG	-	chr4_1:5641991-5642010	Msa0531430:intron	50.0%
	TGCAGGATCTTGCTAAGGCT+AGG	-	chr4_1:5642043-5642062	Msa0531430:intron	50.0%
	GCAGGATCTTGCTAAGGCTA+GGG	-	chr4_1:5642044-5642063	Msa0531430:intron	50.0%
	TCCCGTGAGCTTAACTCAGT+TGG	-	chr4_1:5642743-5642762	Msa0531430:intron	50.0%
	TATACGACCTGACCAAGGTC+AGG	+	chr4_1:5643121-5643140	None:intergenic	50.0%
	TGGGCATAAGCTTGGTCACG+TGG	-	chr4_1:5641924-5641943	Msa0531430:CDS	55.0%
	GTCACGTGGAAACTAGGGGT+TGG	-	chr4_1:5641938-5641957	Msa0531430:CDS	55.0%
!	AACTAGGGGTTGGCACGTGA+AGG	-	chr4_1:5641948-5641967	Msa0531430:CDS	55.0%
!	ACTAGGGGTTGGCACGTGAA+GGG	-	chr4_1:5641949-5641968	Msa0531430:CDS	55.0%
	GGGACTTCCTTCTGCAGATG+TGG	-	chr4_1:5642011-5642030	Msa0531430:intron	55.0%
	TGGGCATAAGCTTGGTCACG+TGG	-	chr4_1:5641924-5641943	Msa0531430:CDS	55.0%
	GTCACGTGGAAACTAGGGGT+TGG	-	chr4_1:5641938-5641957	Msa0531430:CDS	55.0%
!	AACTAGGGGTTGGCACGTGA+AGG	-	chr4_1:5641948-5641967	Msa0531430:CDS	55.0%
!	ACTAGGGGTTGGCACGTGAA+GGG	-	chr4_1:5641949-5641968	Msa0531430:CDS	55.0%
	GGGACTTCCTTCTGCAGATG+TGG	-	chr4_1:5642011-5642030	Msa0531430:intron	55.0%
!	GGGTTGGCACGTGAAGGGTT+GGG	-	chr4_1:5641954-5641973	Msa0531430:CDS	60.0%
	GGTTGGCACGTGAAGGGTTG+GGG	-	chr4_1:5641955-5641974	Msa0531430:CDS	60.0%
!	GGGTTGGCACGTGAAGGGTT+GGG	-	chr4_1:5641954-5641973	Msa0531430:CDS	60.0%
	GGTTGGCACGTGAAGGGTTG+GGG	-	chr4_1:5641955-5641974	Msa0531430:CDS	60.0%
!	GGGGTTGGCACGTGAAGGGT+TGG	-	chr4_1:5641953-5641972	Msa0531430:CDS	65.0%
!	GGGGTTGGCACGTGAAGGGT+TGG	-	chr4_1:5641953-5641972	Msa0531430:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	5641595	5643429	5641595	ID=Msa0531430;Name=Msa0531430
chr4_1	mRNA	5641595	5643429	5641595	ID=Msa0531430-mRNA-1;Parent=Msa0531430;Name=Msa0531430-mRNA-1;_AED=0.02;_eAED=0.02;_QI=48\|1\|1\|1\|1\|1\|2\|313\|197
chr4_1	exon	5641595	5642003	5641595	ID=Msa0531430-mRNA-1:exon:1810;Parent=Msa0531430-mRNA-1
chr4_1	exon	5642884	5643429	5642884	ID=Msa0531430-mRNA-1:exon:1809;Parent=Msa0531430-mRNA-1
chr4_1	five_prime_UTR	5643382	5643429	5643382	ID=Msa0531430-mRNA-1:five_prime_utr;Parent=Msa0531430-mRNA-1
chr4_1	CDS	5642884	5643381	5642884	ID=Msa0531430-mRNA-1:cds;Parent=Msa0531430-mRNA-1
chr4_1	CDS	5641908	5642003	5641908	ID=Msa0531430-mRNA-1:cds;Parent=Msa0531430-mRNA-1
chr4_1	three_prime_UTR	5641595	5641907	5641595	ID=Msa0531430-mRNA-1:three_prime_utr;Parent=Msa0531430-mRNA-1

Gene Sequence

>Msa0531430

ATGACATACTCAAAACAAGACACCCAAAACTACCTCGTTATACCACGATGTTGTGTCTTCCTATTATGGATAGTGTTTCTAACATTGTGTATAACGGCGTTGTTTTTCCTATGGCCATTAAACCCAGAAATTGAAATGGAAAATTTAATAGTCAAACGAGCAAAAGTTCACCCGTTACCACCGTTAAGTGCTGATGTGTCATTATCAGCAACCGTTAAAATTCACAACAAGGTTTTGTACTGGATGCAACTAGATGAGGTTGATGTTGGCATCAAGTATCGTGGGCATAAGCTTGGTCACGTGGAAACTAGGGGTTGGCACGTGAAGGGTTGGGGTTCAGAACATGTGTTTGGGGAGCTTGAGTTTGGGGGACTTCCTTCTGCAGATGTGGCACATTTGATGCAGGATCTTGCTAAGGCTAGGGTTCATTTTCATACTGCTGTTGAAGTTGTGGGAAATCTTGGACTTTTTACCTTTCACTTCCCTAATATTTTCAAGGTAAAACTATCATGTGAGGTTTTGGTGAATACAAAAAACCATACCATTGTACATAGCCATTGTGTTGAAAAGGTAAAGCTTAAGAAACCGTTATAG

Protein sequence

>Msa0531430

MTYSKQDTQNYLVIPRCCVFLLWIVFLTLCITALFFLWPLNPEIEMENLIVKRAKVHPLPPLSADVSLSATVKIHNKVLYWMQLDEVDVGIKYRGHKLGHVETRGWHVKGWGSEHVFGELEFGGLPSADVAHLMQDLAKARVHFHTAVEVVGNLGLFTFHFPNIFKVKLSCEVLVNTKNHTIVHSHCVEKVKLKKPL*