Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693650 | XP_013456831.1 | 93.967 | 547 | 25 | 3 | 1 | 540 | 1 | 546 | 0.0 | 857 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693650 | A0A072UMI4 | 93.967 | 547 | 25 | 3 | 1 | 540 | 1 | 546 | 0.0 | 857 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0672570 | Msa0693650 | 0.812043 | 5.169437e-51 | -8.615850e-47 |
| Msa0692040 | Msa0693650 | -0.812879 | 3.394640e-51 | -8.615850e-47 |
| Msa0693370 | Msa0693650 | 0.804719 | 1.887399e-49 | -8.615850e-47 |
| Msa0693650 | Msa0749290 | 0.807456 | 5.010689e-50 | -8.615850e-47 |
| Msa0693650 | Msa0749320 | 0.806908 | 6.545367e-50 | -8.615850e-47 |
| Msa0693650 | Msa1019000 | 0.801881 | 7.302535e-49 | -8.615850e-47 |
| Msa0693650 | Msa1100050 | 0.833570 | 4.943745e-56 | -8.615850e-47 |
| Msa0693650 | Msa1135470 | 0.801692 | 7.984662e-49 | -8.615850e-47 |
| Msa0693650 | Msa1199570 | 0.800056 | 1.723350e-48 | -8.615850e-47 |
| Msa0693650 | Msa1212940 | 0.801444 | 8.976929e-49 | -8.615850e-47 |
| Msa0428590 | Msa0693650 | 0.821421 | 4.075064e-53 | -8.615850e-47 |
| Msa0453890 | Msa0693650 | 0.803130 | 4.037972e-49 | -8.615850e-47 |
| Msa0245940 | Msa0693650 | 0.822138 | 2.781297e-53 | -8.615850e-47 |
| Msa0303890 | Msa0693650 | -0.813888 | 2.037577e-51 | -8.615850e-47 |
| Msa0557320 | Msa0693650 | 0.828289 | 9.766345e-55 | -8.615850e-47 |
| Msa0571130 | Msa0693650 | 0.814602 | 1.417025e-51 | -8.615850e-47 |
| Msa0578860 | Msa0693650 | 0.800123 | 1.670328e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693650 | MtrunA17_Chr4g0044041 | 93.967 | 547 | 25 | 3 | 1 | 540 | 1 | 546 | 0.0 | 857 |
| Msa0693650 | MtrunA17_Chr7g0267611 | 47.788 | 113 | 54 | 3 | 30 | 141 | 5 | 113 | 1.19e-25 | 102 |
| Msa0693650 | MtrunA17_Chr4g0008711 | 46.903 | 113 | 57 | 3 | 31 | 141 | 1 | 112 | 2.01e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693650 | AT5G08780.1 | 33.557 | 149 | 70 | 5 | 57 | 198 | 39 | 165 | 3.55e-16 | 81.6 |
Find 169 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAGAGGTTGTGTGAAAC+TGG | 0.245357 | 4_4:+62577723 | Msa0693650:CDS |
| TGTAGAGAGAGGGATGAATT+TGG | 0.250723 | 4_4:+62577872 | Msa0693650:CDS |
| GGCCTTCCTCTCTTTCTCTT+TGG | 0.270119 | 4_4:-62580482 | None:intergenic |
| ATATCACACACCTTGGCTTT+AGG | 0.289517 | 4_4:-62580941 | None:intergenic |
| AGAAGGGATTGTTCTTCTTC+AGG | 0.304738 | 4_4:-62577275 | None:intergenic |
| GGTGATGATGATTCTATTCC+TGG | 0.305283 | 4_4:-62580287 | None:intergenic |
| CTCCACGGAGGAGGCGATTT+CGG | 0.317455 | 4_4:+62577638 | Msa0693650:CDS |
| TGTTCTACAATTCCCTCTTC+AGG | 0.317518 | 4_4:-62579107 | None:intergenic |
| ACAATGTGAAGAGGAATTAA+AGG | 0.320847 | 4_4:+62580646 | Msa0693650:CDS |
| TATAAATAGCAACTTAAATC+TGG | 0.335322 | 4_4:-62581049 | None:intergenic |
| ACGGAATTGAAAGACAAAAT+AGG | 0.341816 | 4_4:+62577615 | Msa0693650:CDS |
| AAATACACTTGGAAGTAGTT+TGG | 0.353541 | 4_4:+62581094 | Msa0693650:three_prime_UTR |
| ATGGTTGTGGCTTCAGCAGC+TGG | 0.368019 | 4_4:-62580982 | None:intergenic |
| AGGAAGGTGGTAAGGGTAGT+AGG | 0.372318 | 4_4:+62578928 | Msa0693650:CDS |
| GAGAGTGATCATCATTCAAT+TGG | 0.384799 | 4_4:+62577933 | Msa0693650:CDS |
| GGGTTAGAGAAGGGTTGAGT+TGG | 0.395498 | 4_4:-62577376 | None:intergenic |
| GTGCATACCAAGGCGTAAGG+GGG | 0.397121 | 4_4:-62577479 | None:intergenic |
| TACAATGAAGGAAATACTAA+TGG | 0.397587 | 4_4:+62580407 | Msa0693650:CDS |
| GGAAGAGAAGGAAGGTGGTA+AGG | 0.398946 | 4_4:+62578920 | Msa0693650:CDS |
| GGGTGGAAGGGGTTAGAGAA+GGG | 0.414522 | 4_4:-62577385 | None:intergenic |
| AGGGTAGTAGGAAGAGGAAG+AGG | 0.416755 | 4_4:+62578940 | Msa0693650:CDS |
| GGTGCATACCAAGGCGTAAG+GGG | 0.418485 | 4_4:-62577480 | None:intergenic |
| GTTGTTGTTGATTGCGGAAT+CGG | 0.418525 | 4_4:-62577306 | None:intergenic |
| CGTGGTCGCGGTCGTGGTCG+AGG | 0.420606 | 4_4:+62580911 | Msa0693650:CDS |
| GGTTAGAGAAGGGTTGAGTT+GGG | 0.420957 | 4_4:-62577375 | None:intergenic |
| GAGCGATCGGTTAGGGTGGA+AGG | 0.427550 | 4_4:-62577398 | None:intergenic |
| CGTGGCCGTGGTCGCGGTCG+TGG | 0.437926 | 4_4:+62580905 | Msa0693650:CDS |
| ACTGGAAGAGACACAAATTC+AGG | 0.438243 | 4_4:+62579136 | Msa0693650:CDS |
| CCTTGAACTTCACATGGTTG+TGG | 0.448036 | 4_4:-62580995 | None:intergenic |
| GGATGAATTTGGTTAGTGTT+GGG | 0.448262 | 4_4:+62577883 | Msa0693650:CDS |
| AGCGTAAGTGTGGTAGGAAG+AGG | 0.450070 | 4_4:+62577811 | Msa0693650:CDS |
| CGAGGTCGAGGTCGCGGTCA+AGG | 0.450817 | 4_4:+62580821 | Msa0693650:CDS |
| GGTAATAGAAGGGGTAATCG+TGG | 0.452536 | 4_4:+62577843 | Msa0693650:CDS |
| TGAAGGAAGAGCGATCGGTT+AGG | 0.453267 | 4_4:-62577406 | None:intergenic |
| GGGGTGCATACCAAGGCGTA+AGG | 0.453797 | 4_4:-62577482 | None:intergenic |
| CGTGAGACCGAAAACCTTTG+AGG | 0.454036 | 4_4:+62577224 | Msa0693650:five_prime_UTR |
| GAAGAGAAGGAAGGTGGTAA+GGG | 0.456858 | 4_4:+62578921 | Msa0693650:CDS |
| GAAGGAAGAGCGATCGGTTA+GGG | 0.457840 | 4_4:-62577405 | None:intergenic |
| AGTGAGAGTGATCGTTCAAT+TGG | 0.461186 | 4_4:+62579056 | Msa0693650:CDS |
| TTGTGTTTGTTAGATAGTGC+TGG | 0.461779 | 4_4:+62579008 | Msa0693650:CDS |
| GGGATGAATTTGGTTAGTGT+TGG | 0.471644 | 4_4:+62577882 | Msa0693650:CDS |
| AAGTTGCGTGGCCGTGGTCG+CGG | 0.471787 | 4_4:+62580899 | Msa0693650:CDS |
| GAGGTCGAGGTCGCGGTCAA+GGG | 0.473401 | 4_4:+62580822 | Msa0693650:CDS |
| GGGTAGTAGGAAGAGGAAGA+GGG | 0.473741 | 4_4:+62578941 | Msa0693650:CDS |
| GAAGCCATTGCTGCTTAAGC+GGG | 0.474812 | 4_4:+62580538 | Msa0693650:CDS |
| AATTGTAGAACATACTGAAC+TGG | 0.475619 | 4_4:+62579118 | Msa0693650:CDS |
| AGGGTGGAAGGGGTTAGAGA+AGG | 0.478479 | 4_4:-62577386 | None:intergenic |
| GATGATAAACAAGGCAATAA+CGG | 0.480539 | 4_4:+62577596 | Msa0693650:intron |
| CCACAACCATGTGAAGTTCA+AGG | 0.481145 | 4_4:+62580995 | Msa0693650:three_prime_UTR |
| GTGGTCGCGGTCGTGGTCGA+GGG | 0.482799 | 4_4:+62580912 | Msa0693650:CDS |
| TGTGGTAGGAAGAGGAAGAG+AGG | 0.485077 | 4_4:+62577819 | Msa0693650:CDS |
| CGGAATCGGTGTGAAGAAGA+AGG | 0.485922 | 4_4:-62577292 | None:intergenic |
| GTGGTAGGAAGAGGAAGAGA+GGG | 0.489978 | 4_4:+62577820 | Msa0693650:CDS |
| AGAAGCTGGTGCCTCTGCTA+TGG | 0.490222 | 4_4:-62580864 | None:intergenic |
| AATTAAAGGAGTCAGAAGAA+AGG | 0.491234 | 4_4:+62580660 | Msa0693650:CDS |
| CAAGCTAAGTTGCGTGGCCG+TGG | 0.492055 | 4_4:+62580893 | Msa0693650:CDS |
| CAAGGTCGTGGTCGAGGTCG+AGG | 0.495597 | 4_4:+62580809 | Msa0693650:CDS |
| TGCATAATATCTACAGGTCC+AGG | 0.497226 | 4_4:+62580269 | Msa0693650:CDS |
| AGCAGCTGGTTCGTCTGCTA+TGG | 0.497740 | 4_4:-62580968 | None:intergenic |
| GTGGTAAGGGTAGTAGGAAG+AGG | 0.497820 | 4_4:+62578934 | Msa0693650:CDS |
| AAGAAAAGCGTAAGTGTGGT+AGG | 0.499659 | 4_4:+62577805 | Msa0693650:CDS |
| TAAGCAGCAATGGCTTCTCT+TGG | 0.500886 | 4_4:-62580532 | None:intergenic |
| TTAGATCAAGCTAAGTTGTA+TGG | 0.502446 | 4_4:+62580740 | Msa0693650:CDS |
| CGTGGAGGAGATGTAGAGAG+AGG | 0.502567 | 4_4:+62577861 | Msa0693650:CDS |
| TTCTCTTCCTCACCATCAGC+CGG | 0.502865 | 4_4:-62578906 | None:intergenic |
| TGAAGAACAGACACAAGTTC+AGG | 0.503161 | 4_4:+62577962 | Msa0693650:CDS |
| GCTATGGCATCACACACTTT+AGG | 0.503874 | 4_4:-62580848 | None:intergenic |
| TTAGCTTGATCTTCAGAAGC+TGG | 0.503880 | 4_4:-62580878 | None:intergenic |
| TGCATACCAAGGCGTAAGGG+GGG | 0.504627 | 4_4:-62577478 | None:intergenic |
| GGAAAGAAGAAGAAAAGTCA+AGG | 0.508078 | 4_4:+62580681 | Msa0693650:CDS |
| GAGATTGTGTGTAATGAGAA+TGG | 0.508235 | 4_4:+62577747 | Msa0693650:CDS |
| ATATGATGACGAGCGTCCTC+AGG | 0.508681 | 4_4:+62580382 | Msa0693650:CDS |
| CGTGGTCAAGGTCGTGGTCG+AGG | 0.515259 | 4_4:+62580803 | Msa0693650:CDS |
| CTCTCACTGACCTGTGTCGA+AGG | 0.518222 | 4_4:-62579041 | None:intergenic |
| CCAGAGTGCATAATATCTAC+AGG | 0.518764 | 4_4:+62580263 | Msa0693650:CDS |
| GAGGATTTACCGTGGGCACA+TGG | 0.520496 | 4_4:+62577681 | Msa0693650:CDS |
| AGATTGTGTGTAATGAGAAT+GGG | 0.524129 | 4_4:+62577748 | Msa0693650:CDS |
| TCACACACCTTGGCTTTAGG+AGG | 0.524538 | 4_4:-62580938 | None:intergenic |
| GAGAAAGAAAAGCGTAAGTG+TGG | 0.526594 | 4_4:+62577801 | Msa0693650:CDS |
| AAGTTGCGTGGTCAAGGTCG+TGG | 0.529047 | 4_4:+62580797 | Msa0693650:CDS |
| CAAGCTAAGTTGCGTGGTCA+AGG | 0.529296 | 4_4:+62580791 | Msa0693650:CDS |
| GACCATCAGAGTCAGACATT+GGG | 0.529678 | 4_4:-62580445 | None:intergenic |
| GACTGAAGAGCCTTCGACAC+AGG | 0.534825 | 4_4:+62579031 | Msa0693650:CDS |
| GTCGAGGTCGCGGTCAAGGG+AGG | 0.535336 | 4_4:+62580825 | Msa0693650:CDS |
| CGTGGTCGAGGTCGAGGTCG+CGG | 0.535806 | 4_4:+62580815 | Msa0693650:CDS |
| AGTCGTGGAGACGGAGAGAG+TGG | 0.538707 | 4_4:+62578978 | Msa0693650:CDS |
| AATGGTCAAACTAGAGGTCG+AGG | 0.539978 | 4_4:+62580593 | Msa0693650:CDS |
| GCGATCGGTTAGGGTGGAAG+GGG | 0.540317 | 4_4:-62577396 | None:intergenic |
| TCAAGAGGTTGTGTGAAACT+GGG | 0.540721 | 4_4:+62577724 | Msa0693650:CDS |
| CCATGTGAAGTTCAAGGTAG+AGG | 0.544451 | 4_4:+62581001 | Msa0693650:three_prime_UTR |
| GGTAGTAGGAAGAGGAAGAG+GGG | 0.547007 | 4_4:+62578942 | Msa0693650:CDS |
| GTGGAGGAGATGTAGAGAGA+GGG | 0.548271 | 4_4:+62577862 | Msa0693650:CDS |
| TGGTAGGAAGAGGAAGAGAG+GGG | 0.548459 | 4_4:+62577821 | Msa0693650:CDS |
| CGTCCTCAGGACTACAATGA+AGG | 0.549124 | 4_4:+62580395 | Msa0693650:CDS |
| AGCGATCGGTTAGGGTGGAA+GGG | 0.549296 | 4_4:-62577397 | None:intergenic |
| CAAAATAGGCTCCACGGAGG+AGG | 0.549874 | 4_4:+62577629 | Msa0693650:CDS |
| AGACCATCAGAGTCAGACAT+TGG | 0.555075 | 4_4:-62580446 | None:intergenic |
| AGTAGCGAAATTTATGCAGA+AGG | 0.556528 | 4_4:+62580236 | Msa0693650:CDS |
| AGGTCGAGGGAGGCCTCGTA+AGG | 0.558089 | 4_4:+62580607 | Msa0693650:CDS |
| AATATCGACTGACATTGATA+CGG | 0.558289 | 4_4:+62580328 | Msa0693650:CDS |
| GATGGTGAGGAAGAGAAGGA+AGG | 0.560114 | 4_4:+62578912 | Msa0693650:CDS |
| GGCTGATGGTGAGGAAGAGA+AGG | 0.561675 | 4_4:+62578908 | Msa0693650:CDS |
| GACACAAATACAACCTGAAG+AGG | 0.561834 | 4_4:+62579094 | Msa0693650:CDS |
| GCTCCCCGCTTAAGCAGCAA+TGG | 0.564948 | 4_4:-62580542 | None:intergenic |
| GGTGAGGAAGAGAAGGAAGG+TGG | 0.569819 | 4_4:+62578915 | Msa0693650:CDS |
| CCTCTACCTTGAACTTCACA+TGG | 0.571338 | 4_4:-62581001 | None:intergenic |
| GTCGCGGTCGTGGTCGAGGG+AGG | 0.573904 | 4_4:+62580915 | Msa0693650:CDS |
| ACTGCACTAGTTTGTGCGAA+TGG | 0.575058 | 4_4:+62580359 | Msa0693650:CDS |
| ATTTGATGTGGCACCTGTGT+TGG | 0.575188 | 4_4:-62580308 | None:intergenic |
| AAGAAGAAGAAGGAGCAGAA+TGG | 0.575723 | 4_4:+62580575 | Msa0693650:CDS |
| GGGTGCATACCAAGGCGTAA+GGG | 0.575856 | 4_4:-62577481 | None:intergenic |
| GTCTGACTCTGATGGTCTTG+AGG | 0.576545 | 4_4:+62580451 | Msa0693650:CDS |
| TTGAAGGCGAGATTGAATGA+AGG | 0.583834 | 4_4:-62577423 | None:intergenic |
| AGAGGAAGAGGGGCAACACA+AGG | 0.584115 | 4_4:+62578952 | Msa0693650:CDS |
| TTTCCTTCATTGTAGTCCTG+AGG | 0.585221 | 4_4:-62580398 | None:intergenic |
| ATGCAACCAAAGAGAAAGAG+AGG | 0.585795 | 4_4:+62580476 | Msa0693650:CDS |
| TGTGTTTGTTAGATAGTGCT+GGG | 0.586318 | 4_4:+62579009 | Msa0693650:CDS |
| GAGTAGAAATTAAATACACT+TGG | 0.587732 | 4_4:+62581083 | Msa0693650:three_prime_UTR |
| AACCAAAGAGAAAGAGAGGA+AGG | 0.590263 | 4_4:+62580480 | Msa0693650:CDS |
| AGAAGCCATTGCTGCTTAAG+CGG | 0.590614 | 4_4:+62580537 | Msa0693650:CDS |
| CTCGACCACGACCGCGACCA+CGG | 0.591450 | 4_4:-62580910 | None:intergenic |
| ATATCGACTGACATTGATAC+GGG | 0.591886 | 4_4:+62580329 | Msa0693650:CDS |
| AGATACTGAACAATGTGAAG+AGG | 0.591955 | 4_4:+62580637 | Msa0693650:CDS |
| TCGTTCAATTGGAAGTGTTG+AGG | 0.595171 | 4_4:+62579067 | Msa0693650:CDS |
| TTGAATGAAGGAAGAGCGAT+CGG | 0.603334 | 4_4:-62577411 | None:intergenic |
| CCTTTGAGGTATTCTCAACA+TGG | 0.604055 | 4_4:+62577238 | Msa0693650:exon |
| AGGATTTACCGTGGGCACAT+GGG | 0.604105 | 4_4:+62577682 | Msa0693650:CDS |
| CTCCGAAATCGCCTCCTCCG+TGG | 0.604355 | 4_4:-62577640 | None:intergenic |
| GGAAGAGCGATCGGTTAGGG+TGG | 0.606329 | 4_4:-62577402 | None:intergenic |
| CCATGTTGAGAATACCTCAA+AGG | 0.610534 | 4_4:-62577238 | None:intergenic |
| AGAATCAAGAGCAACCGCAC+AGG | 0.610968 | 4_4:-62581143 | None:intergenic |
| ACAAGGAGTAGTCGTGGAGA+CGG | 0.612539 | 4_4:+62578969 | Msa0693650:CDS |
| GTAGCGAAATTTATGCAGAA+GGG | 0.615809 | 4_4:+62580237 | Msa0693650:CDS |
| AAAATCTTCCCATGTGCCCA+CGG | 0.616052 | 4_4:-62577690 | None:intergenic |
| GGCAACACAAGGAGTAGTCG+TGG | 0.619050 | 4_4:+62578963 | Msa0693650:CDS |
| GGTAGGAAGAGGAAGAGAGG+GGG | 0.619367 | 4_4:+62577822 | Msa0693650:CDS |
| TGTGAAGTTCAAGGTAGAGG+TGG | 0.619648 | 4_4:+62581004 | Msa0693650:three_prime_UTR |
| AGGGAGGCCTCCTAAAGCCA+AGG | 0.621652 | 4_4:+62580931 | Msa0693650:CDS |
| AGAATCATCATCACCAACAC+AGG | 0.622124 | 4_4:+62580295 | Msa0693650:CDS |
| TGAGTTGTTGTTGTTGATTG+CGG | 0.622730 | 4_4:-62577312 | None:intergenic |
| GGAATCGGTGTGAAGAAGAA+GGG | 0.630426 | 4_4:-62577291 | None:intergenic |
| GTATCTTGATTTACCTTACG+AGG | 0.632699 | 4_4:-62580620 | None:intergenic |
| CCTGTAGATATTATGCACTC+TGG | 0.633026 | 4_4:-62580263 | None:intergenic |
| GAAAGACAAAATAGGCTCCA+CGG | 0.634693 | 4_4:+62577623 | Msa0693650:CDS |
| GTCGTGGAGACGGAGAGAGT+GGG | 0.635010 | 4_4:+62578979 | Msa0693650:CDS |
| ATGTCAGTCGATATTTGATG+TGG | 0.635873 | 4_4:-62580320 | None:intergenic |
| ACACAAATACAACCTGAAGA+GGG | 0.639932 | 4_4:+62579095 | Msa0693650:CDS |
| CAAGAGGTTGTGTGAAACTG+GGG | 0.643947 | 4_4:+62577725 | Msa0693650:CDS |
| AACCCAATGTCTGACTCTGA+TGG | 0.644248 | 4_4:+62580443 | Msa0693650:CDS |
| AAAGATCAAGCTAAGTTGCG+TGG | 0.646540 | 4_4:+62580785 | Msa0693650:CDS |
| AGAATACGAGGATTTACCGT+GGG | 0.647151 | 4_4:+62577674 | Msa0693650:CDS |
| GAGCAGAATGGTCAAACTAG+AGG | 0.648793 | 4_4:+62580587 | Msa0693650:CDS |
| AAGCCATTGCTGCTTAAGCG+GGG | 0.653882 | 4_4:+62580539 | Msa0693650:CDS |
| GAAGATCAAGCTAAGTTGCG+TGG | 0.661099 | 4_4:+62580887 | Msa0693650:CDS |
| GATCAAGCTAAGTTGTATGG+TGG | 0.661524 | 4_4:+62580743 | Msa0693650:CDS |
| ATGGTCAAACTAGAGGTCGA+GGG | 0.663574 | 4_4:+62580594 | Msa0693650:CDS |
| TTGTGTGTAATGAGAATGGG+AGG | 0.666092 | 4_4:+62577751 | Msa0693650:CDS |
| GAATCAGATTCTGACTTACG+AGG | 0.667216 | 4_4:-62580503 | None:intergenic |
| GTTTGTGAAAAGAGAATACG+AGG | 0.669635 | 4_4:+62577662 | Msa0693650:CDS |
| GTCAAACTAGAGGTCGAGGG+AGG | 0.671711 | 4_4:+62580597 | Msa0693650:CDS |
| TGAGTCTCTGAGTTGAGACA+TGG | 0.677723 | 4_4:-62577336 | None:intergenic |
| AGTGTGTGATGCCATAGCAG+AGG | 0.686518 | 4_4:+62580853 | Msa0693650:CDS |
| TGGTATCATATCACACACCT+TGG | 0.693412 | 4_4:-62580948 | None:intergenic |
| AATAGAAGGGGTAATCGTGG+AGG | 0.703465 | 4_4:+62577846 | Msa0693650:CDS |
| TTGAGGTATTCTCAACATGG+CGG | 0.723986 | 4_4:+62577241 | Msa0693650:exon |
| AGTCATACATTATACCTGTG+CGG | 0.725687 | 4_4:+62581129 | Msa0693650:three_prime_UTR |
| GAGAATACGAGGATTTACCG+TGG | 0.727570 | 4_4:+62577673 | Msa0693650:CDS |
| GTGTGTGCAGATGATAAACA+AGG | 0.750453 | 4_4:+62577587 | Msa0693650:intron |
| AGACAAAATAGGCTCCACGG+AGG | 0.776587 | 4_4:+62577626 | Msa0693650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTAATGTCATAT+TGG | - | chr4_4:62578142-62578161 | None:intergenic | 10.0% |
| !! | AAAATATCAAAAATAAGATA+CGG | - | chr4_4:62578600-62578619 | None:intergenic | 10.0% |
| !! | AAGTAATAATTGTTAAAAAA+TGG | - | chr4_4:62579932-62579951 | None:intergenic | 10.0% |
| !!! | AATTATTACTTTAAAGAATT+AGG | + | chr4_4:62579941-62579960 | Msa0693650:intron | 10.0% |
| !! | TTGAAAAAAAAAAAAAAGTT+AGG | - | chr4_4:62579993-62580012 | None:intergenic | 10.0% |
| !! | TAAATATAACAATATTCTAG+TGG | - | chr4_4:62578237-62578256 | None:intergenic | 15.0% |
| !! | TGATTAAAAAAACACAAATT+TGG | + | chr4_4:62578278-62578297 | Msa0693650:intron | 15.0% |
| !! | GATTAAAAAAACACAAATTT+GGG | + | chr4_4:62578279-62578298 | Msa0693650:intron | 15.0% |
| !!! | AATTTTGCATTAATGAAAAA+AGG | - | chr4_4:62580072-62580091 | None:intergenic | 15.0% |
| !! | TGAATTGTTGATATCAAATT+AGG | - | chr4_4:62579495-62579514 | None:intergenic | 20.0% |
| !! | TAAAACTACGTAATCAAATT+AGG | - | chr4_4:62579539-62579558 | None:intergenic | 20.0% |
| !!! | AAGTTTCTTTTGATGAATAT+TGG | - | chr4_4:62579839-62579858 | None:intergenic | 20.0% |
| !! | ATTACAAACTTGTGATTAAA+GGG | - | chr4_4:62580124-62580143 | None:intergenic | 20.0% |
| !! | TATAAATAGCAACTTAAATC+TGG | - | chr4_4:62581052-62581071 | None:intergenic | 20.0% |
| !!! | TTTGCTGTTTTGGTAATTTA+TGG | + | chr4_4:62577988-62578007 | Msa0693650:intron | 25.0% |
| ! | AAAACTCAAAATGCAGAAAT+TGG | + | chr4_4:62578158-62578177 | Msa0693650:intron | 25.0% |
| ! | AAACTCAAAATGCAGAAATT+GGG | + | chr4_4:62578159-62578178 | Msa0693650:intron | 25.0% |
| !!! | GTCTCATTAATTTGTATACA+TGG | + | chr4_4:62579219-62579238 | Msa0693650:intron | 25.0% |
| ! | TTGTATACATGGAAATATGA+AGG | + | chr4_4:62579230-62579249 | Msa0693650:intron | 25.0% |
| ! | ATTCACCCAATCAAAAAAAA+AGG | + | chr4_4:62579510-62579529 | Msa0693650:intron | 25.0% |
| !!! | ATTACGTAGTTTTAGCTTTT+TGG | + | chr4_4:62579545-62579564 | Msa0693650:intron | 25.0% |
| ! | CTATACTTTACTGTTAATTG+TGG | + | chr4_4:62579773-62579792 | Msa0693650:intron | 25.0% |
| ! | GTTTAGAGAACAATTGAATA+AGG | - | chr4_4:62579817-62579836 | None:intergenic | 25.0% |
| ! | GATTACAAACTTGTGATTAA+AGG | - | chr4_4:62580125-62580144 | None:intergenic | 25.0% |
| !! | TAAAATTCATTTGTTGCAGA+TGG | + | chr4_4:62580211-62580230 | Msa0693650:intron | 25.0% |
| ! | TACAATGAAGGAAATACTAA+TGG | + | chr4_4:62580407-62580426 | Msa0693650:CDS | 25.0% |
| ! | AGAGAAGTTAAAGAAAAAAG+AGG | + | chr4_4:62580712-62580731 | Msa0693650:CDS | 25.0% |
| !!! | AAATCTGGTTTTGATTTAAG+TGG | - | chr4_4:62581037-62581056 | None:intergenic | 25.0% |
| ! | GAGTAGAAATTAAATACACT+TGG | + | chr4_4:62581083-62581102 | Msa0693650:three_prime_UTR | 25.0% |
| AAGAATGAAAAAGCTCTTGA+AGG | - | chr4_4:62577442-62577461 | None:intergenic | 30.0% | |
| ! | CTCTATCTACATTACTGATT+TGG | + | chr4_4:62577517-62577536 | Msa0693650:intron | 30.0% |
| GATGATAAACAAGGCAATAA+CGG | + | chr4_4:62577596-62577615 | Msa0693650:intron | 30.0% | |
| ACGGAATTGAAAGACAAAAT+AGG | + | chr4_4:62577615-62577634 | Msa0693650:CDS | 30.0% | |
| AGATTGTGTGTAATGAGAAT+GGG | + | chr4_4:62577748-62577767 | Msa0693650:CDS | 30.0% | |
| ACAAATCATATGAATGGTCA+GGG | - | chr4_4:62578357-62578376 | None:intergenic | 30.0% | |
| TACAAATCATATGAATGGTC+AGG | - | chr4_4:62578358-62578377 | None:intergenic | 30.0% | |
| TCGACTACAAATCATATGAA+TGG | - | chr4_4:62578363-62578382 | None:intergenic | 30.0% | |
| TAGAGTTAAAGACGTGTTAA+AGG | + | chr4_4:62578475-62578494 | Msa0693650:intron | 30.0% | |
| GAAGCAATGATGATCAATTA+AGG | + | chr4_4:62578501-62578520 | Msa0693650:intron | 30.0% | |
| !!! | TTTAGCTTTTCAATACCACA+TGG | + | chr4_4:62578553-62578572 | Msa0693650:intron | 30.0% |
| ! | TAAAACTCATTTGTTGCAGA+TGG | + | chr4_4:62578869-62578888 | Msa0693650:intron | 30.0% |
| ! | GATGGTAAAGAATTTTTCTC+CGG | + | chr4_4:62578887-62578906 | Msa0693650:intron | 30.0% |
| AATTGTAGAACATACTGAAC+TGG | + | chr4_4:62579118-62579137 | Msa0693650:CDS | 30.0% | |
| !!! | ATGCTCTGTTTTGGAATTTT+TGG | + | chr4_4:62579163-62579182 | Msa0693650:intron | 30.0% |
| !!! | TTGGAATTTTTGGCACTTAA+TGG | + | chr4_4:62579173-62579192 | Msa0693650:intron | 30.0% |
| !! | AAACAACTCTAGGATTAGTT+AGG | + | chr4_4:62579255-62579274 | Msa0693650:intron | 30.0% |
| !!! | GGTGTCCTTTTTTTTTGATT+GGG | - | chr4_4:62579518-62579537 | None:intergenic | 30.0% |
| !!! | AGGTGTCCTTTTTTTTTGAT+TGG | - | chr4_4:62579519-62579538 | None:intergenic | 30.0% |
| !!! | TTTAGCTTTTTGGTAGTAGA+TGG | + | chr4_4:62579555-62579574 | Msa0693650:intron | 30.0% |
| TTTACTGTTAATTGTGGCAT+TGG | + | chr4_4:62579779-62579798 | Msa0693650:intron | 30.0% | |
| !! | ATTTATGCAGATTTTGACGA+CGG | + | chr4_4:62579878-62579897 | Msa0693650:intron | 30.0% |
| GAACAGAAGAAAAGAAACAT+GGG | + | chr4_4:62579900-62579919 | Msa0693650:intron | 30.0% | |
| TTTGTAATCTGCATCTGTTT+AGG | + | chr4_4:62580136-62580155 | Msa0693650:intron | 30.0% | |
| ! | AATATCGACTGACATTGATA+CGG | + | chr4_4:62580328-62580347 | Msa0693650:CDS | 30.0% |
| ACAATGTGAAGAGGAATTAA+AGG | + | chr4_4:62580646-62580665 | Msa0693650:CDS | 30.0% | |
| AATTAAAGGAGTCAGAAGAA+AGG | + | chr4_4:62580660-62580679 | Msa0693650:CDS | 30.0% | |
| TTAGATCAAGCTAAGTTGTA+TGG | + | chr4_4:62580740-62580759 | Msa0693650:CDS | 30.0% | |
| AAATACACTTGGAAGTAGTT+TGG | + | chr4_4:62581094-62581113 | Msa0693650:three_prime_UTR | 30.0% | |
| ! | GAGAATACCTCAAAGGTTTT+CGG | - | chr4_4:62577234-62577253 | None:intergenic | 35.0% |
| ! | TGAGTTGTTGTTGTTGATTG+CGG | - | chr4_4:62577315-62577334 | None:intergenic | 35.0% |
| TAGATAGAGAGAAAGAGAGA+GGG | - | chr4_4:62577506-62577525 | None:intergenic | 35.0% | |
| GTTTGTGAAAAGAGAATACG+AGG | + | chr4_4:62577662-62577681 | Msa0693650:CDS | 35.0% | |
| !! | TTTTGAGTCTTCATCTCAAG+AGG | + | chr4_4:62577709-62577728 | Msa0693650:CDS | 35.0% |
| GAGATTGTGTGTAATGAGAA+TGG | + | chr4_4:62577747-62577766 | Msa0693650:CDS | 35.0% | |
| GGATGAATTTGGTTAGTGTT+GGG | + | chr4_4:62577883-62577902 | Msa0693650:CDS | 35.0% | |
| GAGAGTGATCATCATTCAAT+TGG | + | chr4_4:62577933-62577952 | Msa0693650:CDS | 35.0% | |
| !!! | GTTCAGGTATTTTGCTGTTT+TGG | + | chr4_4:62577978-62577997 | Msa0693650:intron | 35.0% |
| ! | ATGGCATTTGATGTTTGCTA+AGG | + | chr4_4:62578007-62578026 | Msa0693650:intron | 35.0% |
| ! | ATTAAAGGGGCACAAAATGT+GGG | - | chr4_4:62578770-62578789 | None:intergenic | 35.0% |
| ATCACAGACTGGTGATTAAA+GGG | - | chr4_4:62578784-62578803 | None:intergenic | 35.0% | |
| ! | TTGTGTTTGTTAGATAGTGC+TGG | + | chr4_4:62579008-62579027 | Msa0693650:CDS | 35.0% |
| ! | TGTGTTTGTTAGATAGTGCT+GGG | + | chr4_4:62579009-62579028 | Msa0693650:CDS | 35.0% |
| ACACAAATACAACCTGAAGA+GGG | + | chr4_4:62579095-62579114 | Msa0693650:CDS | 35.0% | |
| ! | TCAGGTATTATGCTCTGTTT+TGG | + | chr4_4:62579154-62579173 | Msa0693650:intron | 35.0% |
| !! | ACTTAATGGTGCTATTGCTA+AGG | + | chr4_4:62579187-62579206 | Msa0693650:intron | 35.0% |
| TATGAAGGACAAACAACTCT+AGG | + | chr4_4:62579245-62579264 | Msa0693650:intron | 35.0% | |
| GTGTCATATGAATACTGCAA+TGG | - | chr4_4:62579317-62579336 | None:intergenic | 35.0% | |
| ! | GTGTCTAAAGTGCGTTAAAA+TGG | - | chr4_4:62579394-62579413 | None:intergenic | 35.0% |
| TGAAGCAATGATGATCAATG+AGG | + | chr4_4:62579458-62579477 | Msa0693650:intron | 35.0% | |
| GAAGCAATGATGATCAATGA+GGG | + | chr4_4:62579459-62579478 | Msa0693650:intron | 35.0% | |
| AAGCAATGATGATCAATGAG+GGG | + | chr4_4:62579460-62579479 | Msa0693650:intron | 35.0% | |
| AATGCAGAGCTCAAAAACAT+AGG | - | chr4_4:62579752-62579771 | None:intergenic | 35.0% | |
| GGAACAGAAGAAAAGAAACA+TGG | + | chr4_4:62579899-62579918 | Msa0693650:intron | 35.0% | |
| TACATATCTCCGTATCTTGT+TGG | + | chr4_4:62580030-62580049 | Msa0693650:intron | 35.0% | |
| ACATATCTCCGTATCTTGTT+GGG | + | chr4_4:62580031-62580050 | Msa0693650:intron | 35.0% | |
| AAACTTGTGATTAAAGGGAC+AGG | - | chr4_4:62580119-62580138 | None:intergenic | 35.0% | |
| AGTAGCGAAATTTATGCAGA+AGG | + | chr4_4:62580236-62580255 | Msa0693650:CDS | 35.0% | |
| GTAGCGAAATTTATGCAGAA+GGG | + | chr4_4:62580237-62580256 | Msa0693650:CDS | 35.0% | |
| ATGTCAGTCGATATTTGATG+TGG | - | chr4_4:62580323-62580342 | None:intergenic | 35.0% | |
| ! | ATATCGACTGACATTGATAC+GGG | + | chr4_4:62580329-62580348 | Msa0693650:CDS | 35.0% |
| GACCAAAAACAAGAAGAAGA+AGG | + | chr4_4:62580565-62580584 | Msa0693650:CDS | 35.0% | |
| !!! | CTCCTTCTTCTTCTTGTTTT+TGG | - | chr4_4:62580570-62580589 | None:intergenic | 35.0% |
| GTATCTTGATTTACCTTACG+AGG | - | chr4_4:62580623-62580642 | None:intergenic | 35.0% | |
| AGATACTGAACAATGTGAAG+AGG | + | chr4_4:62580637-62580656 | Msa0693650:CDS | 35.0% | |
| GGAAAGAAGAAGAAAAGTCA+AGG | + | chr4_4:62580681-62580700 | Msa0693650:CDS | 35.0% | |
| AGTCATACATTATACCTGTG+CGG | + | chr4_4:62581129-62581148 | Msa0693650:three_prime_UTR | 35.0% | |
| CCATGTTGAGAATACCTCAA+AGG | - | chr4_4:62577241-62577260 | None:intergenic | 40.0% | |
| !! | CCTTTGAGGTATTCTCAACA+TGG | + | chr4_4:62577238-62577257 | Msa0693650:exon | 40.0% |
| ! | TTGAGGTATTCTCAACATGG+CGG | + | chr4_4:62577241-62577260 | Msa0693650:exon | 40.0% |
| AGAAGGGATTGTTCTTCTTC+AGG | - | chr4_4:62577278-62577297 | None:intergenic | 40.0% | |
| ! | GTTGTTGTTGATTGCGGAAT+CGG | - | chr4_4:62577309-62577328 | None:intergenic | 40.0% |
| TTGAATGAAGGAAGAGCGAT+CGG | - | chr4_4:62577414-62577433 | None:intergenic | 40.0% | |
| TTGAAGGCGAGATTGAATGA+AGG | - | chr4_4:62577426-62577445 | None:intergenic | 40.0% | |
| AGATAGAGAGAAAGAGAGAG+GGG | - | chr4_4:62577505-62577524 | None:intergenic | 40.0% | |
| GTAGATAGAGAGAAAGAGAG+AGG | - | chr4_4:62577507-62577526 | None:intergenic | 40.0% | |
| GTGTGTGCAGATGATAAACA+AGG | + | chr4_4:62577587-62577606 | Msa0693650:intron | 40.0% | |
| GAAAGACAAAATAGGCTCCA+CGG | + | chr4_4:62577623-62577642 | Msa0693650:CDS | 40.0% | |
| AGAATACGAGGATTTACCGT+GGG | + | chr4_4:62577674-62577693 | Msa0693650:CDS | 40.0% | |
| TCAAGAGGTTGTGTGAAACT+GGG | + | chr4_4:62577724-62577743 | Msa0693650:CDS | 40.0% | |
| TTGTGTGTAATGAGAATGGG+AGG | + | chr4_4:62577751-62577770 | Msa0693650:CDS | 40.0% | |
| !! | GGAGGTATGTTTTTCCTACT+GGG | + | chr4_4:62577769-62577788 | Msa0693650:CDS | 40.0% |
| ! | GAGGTATGTTTTTCCTACTG+GGG | + | chr4_4:62577770-62577789 | Msa0693650:CDS | 40.0% |
| ! | AGGTATGTTTTTCCTACTGG+GGG | + | chr4_4:62577771-62577790 | Msa0693650:CDS | 40.0% |
| ! | GAGAAAGAAAAGCGTAAGTG+TGG | + | chr4_4:62577801-62577820 | Msa0693650:CDS | 40.0% |
| ! | AAGAAAAGCGTAAGTGTGGT+AGG | + | chr4_4:62577805-62577824 | Msa0693650:CDS | 40.0% |
| TGTAGAGAGAGGGATGAATT+TGG | + | chr4_4:62577872-62577891 | Msa0693650:CDS | 40.0% | |
| GGGATGAATTTGGTTAGTGT+TGG | + | chr4_4:62577882-62577901 | Msa0693650:CDS | 40.0% | |
| TGAAGAACAGACACAAGTTC+AGG | + | chr4_4:62577962-62577981 | Msa0693650:CDS | 40.0% | |
| GAATATCTCTAGGTCGGATT+AGG | + | chr4_4:62578077-62578096 | Msa0693650:intron | 40.0% | |
| AACACAACACGTGTCGAATA+TGG | - | chr4_4:62578114-62578133 | None:intergenic | 40.0% | |
| ATATTCTAGTGGTAGCCTAG+CGG | - | chr4_4:62578226-62578245 | None:intergenic | 40.0% | |
| TTTGGGCCCCAAAAAATTTG+AGG | + | chr4_4:62578296-62578315 | Msa0693650:intron | 40.0% | |
| !!! | ACAGGGCCTCAAATTTTTTG+GGG | - | chr4_4:62578305-62578324 | None:intergenic | 40.0% |
| !!! | CACAGGGCCTCAAATTTTTT+GGG | - | chr4_4:62578306-62578325 | None:intergenic | 40.0% |
| TTCACTGTCAATCATCCATG+TGG | - | chr4_4:62578571-62578590 | None:intergenic | 40.0% | |
| ! | TTAAAGGGGCACAAAATGTG+GGG | - | chr4_4:62578769-62578788 | None:intergenic | 40.0% |
| ! | GATTAAAGGGGCACAAAATG+TGG | - | chr4_4:62578771-62578790 | None:intergenic | 40.0% |
| TCACAGACTGGTGATTAAAG+GGG | - | chr4_4:62578783-62578802 | None:intergenic | 40.0% | |
| GATCACAGACTGGTGATTAA+AGG | - | chr4_4:62578785-62578804 | None:intergenic | 40.0% | |
| ! | AAGAATTTTTCTCCGGCTGA+TGG | + | chr4_4:62578894-62578913 | Msa0693650:CDS | 40.0% |
| AGTGAGAGTGATCGTTCAAT+TGG | + | chr4_4:62579056-62579075 | Msa0693650:CDS | 40.0% | |
| !! | TCGTTCAATTGGAAGTGTTG+AGG | + | chr4_4:62579067-62579086 | Msa0693650:CDS | 40.0% |
| GACACAAATACAACCTGAAG+AGG | + | chr4_4:62579094-62579113 | Msa0693650:CDS | 40.0% | |
| TGTTCTACAATTCCCTCTTC+AGG | - | chr4_4:62579110-62579129 | None:intergenic | 40.0% | |
| ACTGGAAGAGACACAAATTC+AGG | + | chr4_4:62579136-62579155 | Msa0693650:CDS | 40.0% | |
| CAACACATCTTTAACTCCAC+AGG | - | chr4_4:62579440-62579459 | None:intergenic | 40.0% | |
| !! | GCTTTTTGGTAGTAGATGGA+TGG | + | chr4_4:62579559-62579578 | Msa0693650:intron | 40.0% |
| ATGAAAAAAGGACTCCGACA+CGG | - | chr4_4:62580060-62580079 | None:intergenic | 40.0% | |
| CCTGTAGATATTATGCACTC+TGG | - | chr4_4:62580266-62580285 | None:intergenic | 40.0% | |
| CCAGAGTGCATAATATCTAC+AGG | + | chr4_4:62580263-62580282 | Msa0693650:CDS | 40.0% | |
| TGCATAATATCTACAGGTCC+AGG | + | chr4_4:62580269-62580288 | Msa0693650:CDS | 40.0% | |
| ! | GGTGATGATGATTCTATTCC+TGG | - | chr4_4:62580290-62580309 | None:intergenic | 40.0% |
| AGAATCATCATCACCAACAC+AGG | + | chr4_4:62580295-62580314 | Msa0693650:CDS | 40.0% | |
| TTTCCTTCATTGTAGTCCTG+AGG | - | chr4_4:62580401-62580420 | None:intergenic | 40.0% | |
| ATGCAACCAAAGAGAAAGAG+AGG | + | chr4_4:62580476-62580495 | Msa0693650:CDS | 40.0% | |
| AACCAAAGAGAAAGAGAGGA+AGG | + | chr4_4:62580480-62580499 | Msa0693650:CDS | 40.0% | |
| GAATCAGATTCTGACTTACG+AGG | - | chr4_4:62580506-62580525 | None:intergenic | 40.0% | |
| AAGAAGAAGAAGGAGCAGAA+TGG | + | chr4_4:62580575-62580594 | Msa0693650:CDS | 40.0% | |
| GATCAAGCTAAGTTGTATGG+TGG | + | chr4_4:62580743-62580762 | Msa0693650:CDS | 40.0% | |
| AAAGATCAAGCTAAGTTGCG+TGG | + | chr4_4:62580785-62580804 | Msa0693650:CDS | 40.0% | |
| ! | TTAGCTTGATCTTCAGAAGC+TGG | - | chr4_4:62580881-62580900 | None:intergenic | 40.0% |
| ! | ATATCACACACCTTGGCTTT+AGG | - | chr4_4:62580944-62580963 | None:intergenic | 40.0% |
| TGGTATCATATCACACACCT+TGG | - | chr4_4:62580951-62580970 | None:intergenic | 40.0% | |
| ! | CTCAAAGGTTTTCGGTCTCA+CGG | - | chr4_4:62577226-62577245 | None:intergenic | 45.0% |
| GGAATCGGTGTGAAGAAGAA+GGG | - | chr4_4:62577294-62577313 | None:intergenic | 45.0% | |
| ! | TGAGTCTCTGAGTTGAGACA+TGG | - | chr4_4:62577339-62577358 | None:intergenic | 45.0% |
| GGTTAGAGAAGGGTTGAGTT+GGG | - | chr4_4:62577378-62577397 | None:intergenic | 45.0% | |
| GATAGAGAGAAAGAGAGAGG+GGG | - | chr4_4:62577504-62577523 | None:intergenic | 45.0% | |
| GAGAATACGAGGATTTACCG+TGG | + | chr4_4:62577673-62577692 | Msa0693650:CDS | 45.0% | |
| AAAATCTTCCCATGTGCCCA+CGG | - | chr4_4:62577693-62577712 | None:intergenic | 45.0% | |
| CTCAAGAGGTTGTGTGAAAC+TGG | + | chr4_4:62577723-62577742 | Msa0693650:CDS | 45.0% | |
| CAAGAGGTTGTGTGAAACTG+GGG | + | chr4_4:62577725-62577744 | Msa0693650:CDS | 45.0% | |
| !! | GGGAGGTATGTTTTTCCTAC+TGG | + | chr4_4:62577768-62577787 | Msa0693650:CDS | 45.0% |
| GAAGAGAGGGGGTAATAGAA+GGG | + | chr4_4:62577833-62577852 | Msa0693650:CDS | 45.0% | |
| AAGAGAGGGGGTAATAGAAG+GGG | + | chr4_4:62577834-62577853 | Msa0693650:CDS | 45.0% | |
| GGTAATAGAAGGGGTAATCG+TGG | + | chr4_4:62577843-62577862 | Msa0693650:CDS | 45.0% | |
| AATAGAAGGGGTAATCGTGG+AGG | + | chr4_4:62577846-62577865 | Msa0693650:CDS | 45.0% | |
| TTAAGCGCGCGAATATCTCT+AGG | + | chr4_4:62578067-62578086 | Msa0693650:intron | 45.0% | |
| ! | ATCTCTAGGTCGGATTAGGT+AGG | + | chr4_4:62578081-62578100 | Msa0693650:intron | 45.0% |
| !!! | GCACAGGGCCTCAAATTTTT+TGG | - | chr4_4:62578307-62578326 | None:intergenic | 45.0% |
| ATCATATGAATGGTCAGGGC+CGG | - | chr4_4:62578353-62578372 | None:intergenic | 45.0% | |
| ATGTCTCCGATGAGTGTCTA+AGG | - | chr4_4:62578441-62578460 | None:intergenic | 45.0% | |
| TCTGTGATCTGCGTCTGTTT+AGG | + | chr4_4:62578796-62578815 | Msa0693650:intron | 45.0% | |
| GAAGAGAAGGAAGGTGGTAA+GGG | + | chr4_4:62578921-62578940 | Msa0693650:CDS | 45.0% | |
| ACACTGATGCGTGTCGAATA+CGG | - | chr4_4:62579288-62579307 | None:intergenic | 45.0% | |
| AGACATCTTAGACACACCTG+TGG | + | chr4_4:62579421-62579440 | Msa0693650:intron | 45.0% | |
| GGTAGTAGATGGATGGTTGA+AGG | + | chr4_4:62579566-62579585 | Msa0693650:intron | 45.0% | |
| GATTAAAGGGACAGGAATGC+AGG | - | chr4_4:62580111-62580130 | None:intergenic | 45.0% | |
| ATTTGATGTGGCACCTGTGT+TGG | - | chr4_4:62580311-62580330 | None:intergenic | 45.0% | |
| ! | ACTGCACTAGTTTGTGCGAA+TGG | + | chr4_4:62580359-62580378 | Msa0693650:CDS | 45.0% |
| AACCCAATGTCTGACTCTGA+TGG | + | chr4_4:62580443-62580462 | Msa0693650:CDS | 45.0% | |
| GACCATCAGAGTCAGACATT+GGG | - | chr4_4:62580448-62580467 | None:intergenic | 45.0% | |
| AGACCATCAGAGTCAGACAT+TGG | - | chr4_4:62580449-62580468 | None:intergenic | 45.0% | |
| TAAGCAGCAATGGCTTCTCT+TGG | - | chr4_4:62580535-62580554 | None:intergenic | 45.0% | |
| ! | AGAAGCCATTGCTGCTTAAG+CGG | + | chr4_4:62580537-62580556 | Msa0693650:CDS | 45.0% |
| GAGCAGAATGGTCAAACTAG+AGG | + | chr4_4:62580587-62580606 | Msa0693650:CDS | 45.0% | |
| AATGGTCAAACTAGAGGTCG+AGG | + | chr4_4:62580593-62580612 | Msa0693650:CDS | 45.0% | |
| ATGGTCAAACTAGAGGTCGA+GGG | + | chr4_4:62580594-62580613 | Msa0693650:CDS | 45.0% | |
| GCTATGGCATCACACACTTT+AGG | - | chr4_4:62580851-62580870 | None:intergenic | 45.0% | |
| GAAGATCAAGCTAAGTTGCG+TGG | + | chr4_4:62580887-62580906 | Msa0693650:CDS | 45.0% | |
| CCTTGAACTTCACATGGTTG+TGG | - | chr4_4:62580998-62581017 | None:intergenic | 45.0% | |
| CCACAACCATGTGAAGTTCA+AGG | + | chr4_4:62580995-62581014 | Msa0693650:three_prime_UTR | 45.0% | |
| CCTCTACCTTGAACTTCACA+TGG | - | chr4_4:62581004-62581023 | None:intergenic | 45.0% | |
| CCATGTGAAGTTCAAGGTAG+AGG | + | chr4_4:62581001-62581020 | Msa0693650:three_prime_UTR | 45.0% | |
| TGTGAAGTTCAAGGTAGAGG+TGG | + | chr4_4:62581004-62581023 | Msa0693650:three_prime_UTR | 45.0% | |
| CGTGAGACCGAAAACCTTTG+AGG | + | chr4_4:62577224-62577243 | Msa0693650:five_prime_UTR | 50.0% | |
| CGGAATCGGTGTGAAGAAGA+AGG | - | chr4_4:62577295-62577314 | None:intergenic | 50.0% | |
| GGGTTAGAGAAGGGTTGAGT+TGG | - | chr4_4:62577379-62577398 | None:intergenic | 50.0% | |
| GAAGGAAGAGCGATCGGTTA+GGG | - | chr4_4:62577408-62577427 | None:intergenic | 50.0% | |
| TGAAGGAAGAGCGATCGGTT+AGG | - | chr4_4:62577409-62577428 | None:intergenic | 50.0% | |
| AGACAAAATAGGCTCCACGG+AGG | + | chr4_4:62577626-62577645 | Msa0693650:CDS | 50.0% | |
| AGGATTTACCGTGGGCACAT+GGG | + | chr4_4:62577682-62577701 | Msa0693650:CDS | 50.0% | |
| ! | TGTTTTTCCTACTGGGGGTG+TGG | + | chr4_4:62577776-62577795 | Msa0693650:CDS | 50.0% |
| AGCGTAAGTGTGGTAGGAAG+AGG | + | chr4_4:62577811-62577830 | Msa0693650:CDS | 50.0% | |
| TGTGGTAGGAAGAGGAAGAG+AGG | + | chr4_4:62577819-62577838 | Msa0693650:CDS | 50.0% | |
| GTGGTAGGAAGAGGAAGAGA+GGG | + | chr4_4:62577820-62577839 | Msa0693650:CDS | 50.0% | |
| TGGTAGGAAGAGGAAGAGAG+GGG | + | chr4_4:62577821-62577840 | Msa0693650:CDS | 50.0% | |
| GGAAGAGAGGGGGTAATAGA+AGG | + | chr4_4:62577832-62577851 | Msa0693650:CDS | 50.0% | |
| GTGGAGGAGATGTAGAGAGA+GGG | + | chr4_4:62577862-62577881 | Msa0693650:CDS | 50.0% | |
| ! | AAATTTGAGGCCCTGTGCCA+TGG | + | chr4_4:62578309-62578328 | Msa0693650:intron | 50.0% |
| ! | AATTTGAGGCCCTGTGCCAT+GGG | + | chr4_4:62578310-62578329 | Msa0693650:intron | 50.0% |
| GTCGCACCTTAGACACTCAT+CGG | + | chr4_4:62578432-62578451 | Msa0693650:intron | 50.0% | |
| AACAGACGCAGATCACAGAC+TGG | - | chr4_4:62578795-62578814 | None:intergenic | 50.0% | |
| !! | TTTTTCTCCGGCTGATGGTG+AGG | + | chr4_4:62578899-62578918 | Msa0693650:CDS | 50.0% |
| TTCTCTTCCTCACCATCAGC+CGG | - | chr4_4:62578909-62578928 | None:intergenic | 50.0% | |
| GATGGTGAGGAAGAGAAGGA+AGG | + | chr4_4:62578912-62578931 | Msa0693650:CDS | 50.0% | |
| GGAAGAGAAGGAAGGTGGTA+AGG | + | chr4_4:62578920-62578939 | Msa0693650:CDS | 50.0% | |
| AGGAAGGTGGTAAGGGTAGT+AGG | + | chr4_4:62578928-62578947 | Msa0693650:CDS | 50.0% | |
| GTGGTAAGGGTAGTAGGAAG+AGG | + | chr4_4:62578934-62578953 | Msa0693650:CDS | 50.0% | |
| AGGGTAGTAGGAAGAGGAAG+AGG | + | chr4_4:62578940-62578959 | Msa0693650:CDS | 50.0% | |
| GGGTAGTAGGAAGAGGAAGA+GGG | + | chr4_4:62578941-62578960 | Msa0693650:CDS | 50.0% | |
| GGTAGTAGGAAGAGGAAGAG+GGG | + | chr4_4:62578942-62578961 | Msa0693650:CDS | 50.0% | |
| ACAAGGAGTAGTCGTGGAGA+CGG | + | chr4_4:62578969-62578988 | Msa0693650:CDS | 50.0% | |
| CACGGACACCCAACAAGATA+CGG | - | chr4_4:62580042-62580061 | None:intergenic | 50.0% | |
| ATCTTGTTGGGTGTCCGTGT+CGG | + | chr4_4:62580043-62580062 | Msa0693650:intron | 50.0% | |
| ! | ATATGATGACGAGCGTCCTC+AGG | + | chr4_4:62580382-62580401 | Msa0693650:CDS | 50.0% |
| CGTCCTCAGGACTACAATGA+AGG | + | chr4_4:62580395-62580414 | Msa0693650:CDS | 50.0% | |
| ! | GTCTGACTCTGATGGTCTTG+AGG | + | chr4_4:62580451-62580470 | Msa0693650:CDS | 50.0% |
| GGCCTTCCTCTCTTTCTCTT+TGG | - | chr4_4:62580485-62580504 | None:intergenic | 50.0% | |
| ! | GAAGCCATTGCTGCTTAAGC+GGG | + | chr4_4:62580538-62580557 | Msa0693650:CDS | 50.0% |
| ! | AAGCCATTGCTGCTTAAGCG+GGG | + | chr4_4:62580539-62580558 | Msa0693650:CDS | 50.0% |
| CAAGCTAAGTTGCGTGGTCA+AGG | + | chr4_4:62580791-62580810 | Msa0693650:CDS | 50.0% | |
| AGTGTGTGATGCCATAGCAG+AGG | + | chr4_4:62580853-62580872 | Msa0693650:CDS | 50.0% | |
| !! | TCACACACCTTGGCTTTAGG+AGG | - | chr4_4:62580941-62580960 | None:intergenic | 50.0% |
| AGAATCAAGAGCAACCGCAC+AGG | - | chr4_4:62581146-62581165 | None:intergenic | 50.0% | |
| GGGTGGAAGGGGTTAGAGAA+GGG | - | chr4_4:62577388-62577407 | None:intergenic | 55.0% | |
| AGGGTGGAAGGGGTTAGAGA+AGG | - | chr4_4:62577389-62577408 | None:intergenic | 55.0% | |
| AGCGATCGGTTAGGGTGGAA+GGG | - | chr4_4:62577400-62577419 | None:intergenic | 55.0% | |
| TGCATACCAAGGCGTAAGGG+GGG | - | chr4_4:62577481-62577500 | None:intergenic | 55.0% | |
| GTGCATACCAAGGCGTAAGG+GGG | - | chr4_4:62577482-62577501 | None:intergenic | 55.0% | |
| GGTGCATACCAAGGCGTAAG+GGG | - | chr4_4:62577483-62577502 | None:intergenic | 55.0% | |
| GGGTGCATACCAAGGCGTAA+GGG | - | chr4_4:62577484-62577503 | None:intergenic | 55.0% | |
| CAAAATAGGCTCCACGGAGG+AGG | + | chr4_4:62577629-62577648 | Msa0693650:CDS | 55.0% | |
| GAGGATTTACCGTGGGCACA+TGG | + | chr4_4:62577681-62577700 | Msa0693650:CDS | 55.0% | |
| TTCTCTTCCACACCCCCAGT+AGG | - | chr4_4:62577786-62577805 | None:intergenic | 55.0% | |
| GGTAGGAAGAGGAAGAGAGG+GGG | + | chr4_4:62577822-62577841 | Msa0693650:CDS | 55.0% | |
| CGTGGAGGAGATGTAGAGAG+AGG | + | chr4_4:62577861-62577880 | Msa0693650:CDS | 55.0% | |
| GCGCGCGAATATCTCTAGGT+CGG | + | chr4_4:62578071-62578090 | Msa0693650:intron | 55.0% | |
| GTCTGTTCGTCGGTAATGCG+TGG | - | chr4_4:62578199-62578218 | None:intergenic | 55.0% | |
| ! | TAGCGGACACGTCTGTTCGT+CGG | - | chr4_4:62578209-62578228 | None:intergenic | 55.0% |
| ! | GGCTGATGGTGAGGAAGAGA+AGG | + | chr4_4:62578908-62578927 | Msa0693650:CDS | 55.0% |
| GGTGAGGAAGAGAAGGAAGG+TGG | + | chr4_4:62578915-62578934 | Msa0693650:CDS | 55.0% | |
| AGAGGAAGAGGGGCAACACA+AGG | + | chr4_4:62578952-62578971 | Msa0693650:CDS | 55.0% | |
| GGCAACACAAGGAGTAGTCG+TGG | + | chr4_4:62578963-62578982 | Msa0693650:CDS | 55.0% | |
| GACTGAAGAGCCTTCGACAC+AGG | + | chr4_4:62579031-62579050 | Msa0693650:CDS | 55.0% | |
| CTCTCACTGACCTGTGTCGA+AGG | - | chr4_4:62579044-62579063 | None:intergenic | 55.0% | |
| GTCAAACTAGAGGTCGAGGG+AGG | + | chr4_4:62580597-62580616 | Msa0693650:CDS | 55.0% | |
| AAGTTGCGTGGTCAAGGTCG+TGG | + | chr4_4:62580797-62580816 | Msa0693650:CDS | 55.0% | |
| AGAAGCTGGTGCCTCTGCTA+TGG | - | chr4_4:62580867-62580886 | None:intergenic | 55.0% | |
| !! | AGCAGCTGGTTCGTCTGCTA+TGG | - | chr4_4:62580971-62580990 | None:intergenic | 55.0% |
| ATGGTTGTGGCTTCAGCAGC+TGG | - | chr4_4:62580985-62581004 | None:intergenic | 55.0% | |
| GCGATCGGTTAGGGTGGAAG+GGG | - | chr4_4:62577399-62577418 | None:intergenic | 60.0% | |
| GAGCGATCGGTTAGGGTGGA+AGG | - | chr4_4:62577401-62577420 | None:intergenic | 60.0% | |
| GGAAGAGCGATCGGTTAGGG+TGG | - | chr4_4:62577405-62577424 | None:intergenic | 60.0% | |
| AAGGCGTAAGGGGGGTGAGT+GGG | - | chr4_4:62577473-62577492 | None:intergenic | 60.0% | |
| GGGGTGCATACCAAGGCGTA+AGG | - | chr4_4:62577485-62577504 | None:intergenic | 60.0% | |
| ! | GAGAGAGGGGGTGCATACCA+AGG | - | chr4_4:62577492-62577511 | None:intergenic | 60.0% |
| CTCCACGGAGGAGGCGATTT+CGG | + | chr4_4:62577638-62577657 | Msa0693650:CDS | 60.0% | |
| GACGAACAGACGTGTCCGCT+AGG | + | chr4_4:62578208-62578227 | Msa0693650:intron | 60.0% | |
| TGAATGGTCAGGGCCGGAGA+GGG | - | chr4_4:62578347-62578366 | None:intergenic | 60.0% | |
| ATGAATGGTCAGGGCCGGAG+AGG | - | chr4_4:62578348-62578367 | None:intergenic | 60.0% | |
| AGTCGTGGAGACGGAGAGAG+TGG | + | chr4_4:62578978-62578997 | Msa0693650:CDS | 60.0% | |
| GTCGTGGAGACGGAGAGAGT+GGG | + | chr4_4:62578979-62578998 | Msa0693650:CDS | 60.0% | |
| GCTCCCCGCTTAAGCAGCAA+TGG | - | chr4_4:62580545-62580564 | None:intergenic | 60.0% | |
| CAAGCTAAGTTGCGTGGCCG+TGG | + | chr4_4:62580893-62580912 | Msa0693650:CDS | 60.0% | |
| AGGGAGGCCTCCTAAAGCCA+AGG | + | chr4_4:62580931-62580950 | Msa0693650:CDS | 60.0% | |
| AGGCGTAAGGGGGGTGAGTG+GGG | - | chr4_4:62577472-62577491 | None:intergenic | 65.0% | |
| CAAGGCGTAAGGGGGGTGAG+TGG | - | chr4_4:62577474-62577493 | None:intergenic | 65.0% | |
| CACTCACCCCCCTTACGCCT+TGG | + | chr4_4:62577472-62577491 | Msa0693650:CDS | 65.0% | |
| CTCCGAAATCGCCTCCTCCG+TGG | - | chr4_4:62577643-62577662 | None:intergenic | 65.0% | |
| GCAAGCAGGCCCATGGCACA+GGG | - | chr4_4:62578322-62578341 | None:intergenic | 65.0% | |
| TGCAAGCAGGCCCATGGCAC+AGG | - | chr4_4:62578323-62578342 | None:intergenic | 65.0% | |
| GAGGGTTGCAAGCAGGCCCA+TGG | - | chr4_4:62578329-62578348 | None:intergenic | 65.0% | |
| GGCCTGCTTGCAACCCTCTC+CGG | + | chr4_4:62578331-62578350 | Msa0693650:intron | 65.0% | |
| AGGTCGAGGGAGGCCTCGTA+AGG | + | chr4_4:62580607-62580626 | Msa0693650:CDS | 65.0% | |
| CGTGGTCAAGGTCGTGGTCG+AGG | + | chr4_4:62580803-62580822 | Msa0693650:CDS | 65.0% | |
| CAAGGTCGTGGTCGAGGTCG+AGG | + | chr4_4:62580809-62580828 | Msa0693650:CDS | 65.0% | |
| GAGGTCGAGGTCGCGGTCAA+GGG | + | chr4_4:62580822-62580841 | Msa0693650:CDS | 65.0% | |
| AAGTTGCGTGGCCGTGGTCG+CGG | + | chr4_4:62580899-62580918 | Msa0693650:CDS | 65.0% | |
| GGCGTAAGGGGGGTGAGTGG+GGG | - | chr4_4:62577471-62577490 | None:intergenic | 70.0% | |
| GGCCGGAGAGGGTTGCAAGC+AGG | - | chr4_4:62578336-62578355 | None:intergenic | 70.0% | |
| CGTGGTCGAGGTCGAGGTCG+CGG | + | chr4_4:62580815-62580834 | Msa0693650:CDS | 70.0% | |
| CGAGGTCGAGGTCGCGGTCA+AGG | + | chr4_4:62580821-62580840 | Msa0693650:CDS | 70.0% | |
| GTCGAGGTCGCGGTCAAGGG+AGG | + | chr4_4:62580825-62580844 | Msa0693650:CDS | 70.0% | |
| CTCGACCACGACCGCGACCA+CGG | - | chr4_4:62580913-62580932 | None:intergenic | 70.0% | |
| GTGGTCGCGGTCGTGGTCGA+GGG | + | chr4_4:62580912-62580931 | Msa0693650:CDS | 70.0% | |
| CGTGGTCGCGGTCGTGGTCG+AGG | + | chr4_4:62580911-62580930 | Msa0693650:CDS | 75.0% | |
| GTCGCGGTCGTGGTCGAGGG+AGG | + | chr4_4:62580915-62580934 | Msa0693650:CDS | 75.0% | |
| ! | CGTGGCCGTGGTCGCGGTCG+TGG | + | chr4_4:62580905-62580924 | Msa0693650:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 62577207 | 62581191 | 62577207 | ID=Msa0693650;Name=Msa0693650 |
| chr4_4 | mRNA | 62577207 | 62581191 | 62577207 | ID=Msa0693650-mRNA-1;Parent=Msa0693650;Name=Msa0693650-mRNA-1;_AED=0.03;_eAED=0.03;_QI=50|1|1|1|1|1|4|218|545 |
| chr4_4 | exon | 62577207 | 62577493 | 62577207 | ID=Msa0693650-mRNA-1:exon:17503;Parent=Msa0693650-mRNA-1 |
| chr4_4 | exon | 62577597 | 62577983 | 62577597 | ID=Msa0693650-mRNA-1:exon:17504;Parent=Msa0693650-mRNA-1 |
| chr4_4 | exon | 62578888 | 62579157 | 62578888 | ID=Msa0693650-mRNA-1:exon:17505;Parent=Msa0693650-mRNA-1 |
| chr4_4 | exon | 62580230 | 62581191 | 62580230 | ID=Msa0693650-mRNA-1:exon:17506;Parent=Msa0693650-mRNA-1 |
| chr4_4 | five_prime_UTR | 62577207 | 62577256 | 62577207 | ID=Msa0693650-mRNA-1:five_prime_utr;Parent=Msa0693650-mRNA-1 |
| chr4_4 | CDS | 62577257 | 62577493 | 62577257 | ID=Msa0693650-mRNA-1:cds;Parent=Msa0693650-mRNA-1 |
| chr4_4 | CDS | 62577597 | 62577983 | 62577597 | ID=Msa0693650-mRNA-1:cds;Parent=Msa0693650-mRNA-1 |
| chr4_4 | CDS | 62578888 | 62579157 | 62578888 | ID=Msa0693650-mRNA-1:cds;Parent=Msa0693650-mRNA-1 |
| chr4_4 | CDS | 62580230 | 62580973 | 62580230 | ID=Msa0693650-mRNA-1:cds;Parent=Msa0693650-mRNA-1 |
| chr4_4 | three_prime_UTR | 62580974 | 62581191 | 62580974 | ID=Msa0693650-mRNA-1:three_prime_utr;Parent=Msa0693650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
