AlfalfaGEDB | Msa0693650

M. sativa cultivar zhongmu-4 / Msa0693650

KEGG: -
GO: -
PFAM: PF00538.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0693650	XP_013456831.1	93.967	547	25	3	1	540	1	546	0.0	857

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0693650	A0A072UMI4	93.967	547	25	3	1	540	1	546	0.0	857

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0245940	Msa0693650	0.822138	2.781297e-53	-8.615850e-47
Msa0303890	Msa0693650	-0.813888	2.037577e-51	-8.615850e-47
Msa0428590	Msa0693650	0.821421	4.075064e-53	-8.615850e-47
Msa0453890	Msa0693650	0.803130	4.037972e-49	-8.615850e-47
Msa0557320	Msa0693650	0.828289	9.766345e-55	-8.615850e-47
Msa0571130	Msa0693650	0.814602	1.417025e-51	-8.615850e-47
Msa0578860	Msa0693650	0.800123	1.670328e-48	-8.615850e-47
Msa0672570	Msa0693650	0.812043	5.169437e-51	-8.615850e-47
Msa0692040	Msa0693650	-0.812879	3.394640e-51	-8.615850e-47
Msa0693370	Msa0693650	0.804719	1.887399e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0693650	MtrunA17_Chr4g0044041	93.967	547	25	3	1	540	1	546	0.0	857
Msa0693650	MtrunA17_Chr7g0267611	47.788	113	54	3	30	141	5	113	1.19e-25	102
Msa0693650	MtrunA17_Chr4g0008711	46.903	113	57	3	31	141	1	112	2.01e-25	102

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0693650	AT5G08780.1	33.557	149	70	5	57	198	39	165	3.55e-16	81.6

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Find 169 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTTCCCATGTGCCCA+CGG	0.616052	4_4:-62577690	None:intergenic
AAAGATCAAGCTAAGTTGCG+TGG	0.646540	4_4:+62580785	Msa0693650:CDS
AAATACACTTGGAAGTAGTT+TGG	0.353541	4_4:+62581094	Msa0693650:three_prime_UTR
AACCAAAGAGAAAGAGAGGA+AGG	0.590263	4_4:+62580480	Msa0693650:CDS
AACCCAATGTCTGACTCTGA+TGG	0.644248	4_4:+62580443	Msa0693650:CDS
AAGAAAAGCGTAAGTGTGGT+AGG	0.499659	4_4:+62577805	Msa0693650:CDS
AAGAAGAAGAAGGAGCAGAA+TGG	0.575723	4_4:+62580575	Msa0693650:CDS
AAGCCATTGCTGCTTAAGCG+GGG	0.653882	4_4:+62580539	Msa0693650:CDS
AAGTTGCGTGGCCGTGGTCG+CGG	0.471787	4_4:+62580899	Msa0693650:CDS
AAGTTGCGTGGTCAAGGTCG+TGG	0.529047	4_4:+62580797	Msa0693650:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAATGAAAAAGCTCTTGA+AGG	-	chr4_4:62577442-62577461	None:intergenic	30.0%
GATGATAAACAAGGCAATAA+CGG	+	chr4_4:62577596-62577615	Msa0693650:intron	30.0%
ACGGAATTGAAAGACAAAAT+AGG	+	chr4_4:62577615-62577634	Msa0693650:CDS	30.0%
AGATTGTGTGTAATGAGAAT+GGG	+	chr4_4:62577748-62577767	Msa0693650:CDS	30.0%
ACAAATCATATGAATGGTCA+GGG	-	chr4_4:62578357-62578376	None:intergenic	30.0%
TACAAATCATATGAATGGTC+AGG	-	chr4_4:62578358-62578377	None:intergenic	30.0%
TCGACTACAAATCATATGAA+TGG	-	chr4_4:62578363-62578382	None:intergenic	30.0%
TAGAGTTAAAGACGTGTTAA+AGG	+	chr4_4:62578475-62578494	Msa0693650:intron	30.0%
GAAGCAATGATGATCAATTA+AGG	+	chr4_4:62578501-62578520	Msa0693650:intron	30.0%
AATTGTAGAACATACTGAAC+TGG	+	chr4_4:62579118-62579137	Msa0693650:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	62577207	62581191	62577207	ID=Msa0693650;Name=Msa0693650
chr4_4	mRNA	62577207	62581191	62577207	ID=Msa0693650-mRNA-1;Parent=Msa0693650;Name=Msa0693650-mRNA-1;_AED=0.03;_eAED=0.03;_QI=50\|1\|1\|1\|1\|1\|4\|218\|545
chr4_4	exon	62577207	62577493	62577207	ID=Msa0693650-mRNA-1:exon:17503;Parent=Msa0693650-mRNA-1
chr4_4	exon	62577597	62577983	62577597	ID=Msa0693650-mRNA-1:exon:17504;Parent=Msa0693650-mRNA-1
chr4_4	exon	62578888	62579157	62578888	ID=Msa0693650-mRNA-1:exon:17505;Parent=Msa0693650-mRNA-1
chr4_4	exon	62580230	62581191	62580230	ID=Msa0693650-mRNA-1:exon:17506;Parent=Msa0693650-mRNA-1
chr4_4	five_prime_UTR	62577207	62577256	62577207	ID=Msa0693650-mRNA-1:five_prime_utr;Parent=Msa0693650-mRNA-1
chr4_4	CDS	62577257	62577493	62577257	ID=Msa0693650-mRNA-1:cds;Parent=Msa0693650-mRNA-1
chr4_4	CDS	62577597	62577983	62577597	ID=Msa0693650-mRNA-1:cds;Parent=Msa0693650-mRNA-1
chr4_4	CDS	62578888	62579157	62578888	ID=Msa0693650-mRNA-1:cds;Parent=Msa0693650-mRNA-1
chr4_4	CDS	62580230	62580973	62580230	ID=Msa0693650-mRNA-1:cds;Parent=Msa0693650-mRNA-1
chr4_4	three_prime_UTR	62580974	62581191	62580974	ID=Msa0693650-mRNA-1:three_prime_utr;Parent=Msa0693650-mRNA-1

Gene Sequence

>Msa0693650

ATGGCGGAAAATAACAAACCTGAAGAAGAACAATCCCTTCTTCTTCACACCGATTCCGCAATCAACAACAACAACTCAGCCATGTCTCAACTCAGAGACTCACTTCTCTCTCAACTCACCCAACTCAACCCTTCTCTAACCCCTTCCACCCTAACCGATCGCTCTTCCTTCATTCAATCTCGCCTTCAAGAGCTTTTTCATTCTTTTCGCACCCCCACTCACCCCCCTTACGCCTTGATGATAAACAAGGCAATAACGGAATTGAAAGACAAAATAGGCTCCACGGAGGAGGCGATTTCGGAGTTTGTGAAAAGAGAATACGAGGATTTACCGTGGGCACATGGGAAGATTTTGAGTCTTCATCTCAAGAGGTTGTGTGAAACTGGGGAGATTGTGTGTAATGAGAATGGGAGGTATGTTTTTCCTACTGGGGGTGTGGAAGAGAAAGAAAAGCGTAAGTGTGGTAGGAAGAGGAAGAGAGGGGGTAATAGAAGGGGTAATCGTGGAGGAGATGTAGAGAGAGGGATGAATTTGGTTAGTGTTGGGAGTGACGAGACTTCGACGCGAGTTTGTGAGAGTGATCATCATTCAATTGGAAATGTTGAAGAACAGACACAAGTTCAGATGGTAAAGAATTTTTCTCCGGCTGATGGTGAGGAAGAGAAGGAAGGTGGTAAGGGTAGTAGGAAGAGGAAGAGGGGCAACACAAGGAGTAGTCGTGGAGACGGAGAGAGTGGGAATCAATTGTGTTTGTTAGATAGTGCTGGGACTGAAGAGCCTTCGACACAGGTCAGTGAGAGTGATCGTTCAATTGGAAGTGTTGAGGAACAGACACAAATACAACCTGAAGAGGGAATTGTAGAACATACTGAACTGGAAGAGACACAAATTCAGATGGTAAGTAGCGAAATTTATGCAGAAGGGTCACCAGAGTGCATAATATCTACAGGTCCAGGAATAGAATCATCATCACCAACACAGGTGCCACATCAAATATCGACTGACATTGATACGGGTATAACAACTGCACTAGTTTGTGCGAATGGATATGATGACGAGCGTCCTCAGGACTACAATGAAGGAAATACTAATGGAAACTCTGATGAGAACCCAATGTCTGACTCTGATGGTCTTGAGGAGATGCAACCAAAGAGAAAGAGAGGAAGGCCTCGTAAGTCAGAATCTGATTCAAACTGCCAAGAGAAGCCATTGCTGCTTAAGCGGGGAGCGACCAAAAACAAGAAGAAGAAGGAGCAGAATGGTCAAACTAGAGGTCGAGGGAGGCCTCGTAAGGTAAATCAAGATACTGAACAATGTGAAGAGGAATTAAAGGAGTCAGAAGAAAGGAAAGAAGAAGAAAAGTCAAGGAAAAAAGAAGAGAAGTTAAAGAAAAAAGAGGAGAAGTTAGATCAAGCTAAGTTGTATGGTGGTGAAAAGAAATTAAAGATAAAAGATCAAGCTAAGTTGCGTGGTCAAGGTCGTGGTCGAGGTCGAGGTCGCGGTCAAGGGAGGCCTAAAGTGTGTGATGCCATAGCAGAGGCACCAGCTTCTGAAGATCAAGCTAAGTTGCGTGGCCGTGGTCGCGGTCGTGGTCGAGGGAGGCCTCCTAAAGCCAAGGTGTGTGATATGATACCATAG

Protein sequence

>Msa0693650

MAENNKPEEEQSLLLHTDSAINNNNSAMSQLRDSLLSQLTQLNPSLTPSTLTDRSSFIQSRLQELFHSFRTPTHPPYALMINKAITELKDKIGSTEEAISEFVKREYEDLPWAHGKILSLHLKRLCETGEIVCNENGRYVFPTGGVEEKEKRKCGRKRKRGGNRRGNRGGDVERGMNLVSVGSDETSTRVCESDHHSIGNVEEQTQVQMVKNFSPADGEEEKEGGKGSRKRKRGNTRSSRGDGESGNQLCLLDSAGTEEPSTQVSESDRSIGSVEEQTQIQPEEGIVEHTELEETQIQMVSSEIYAEGSPECIISTGPGIESSSPTQVPHQISTDIDTGITTALVCANGYDDERPQDYNEGNTNGNSDENPMSDSDGLEEMQPKRKRGRPRKSESDSNCQEKPLLLKRGATKNKKKKEQNGQTRGRGRPRKVNQDTEQCEEELKESEERKEEEKSRKKEEKLKKKEEKLDQAKLYGGEKKLKIKDQAKLRGQGRGRGRGRGQGRPKVCDAIAEAPASEDQAKLRGRGRGRGRGRPPKAKVCDMIP*