AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0312080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0312080 MtrunA17_Chr2g0292921 99.248 133 1 0 1 133 1 133 2.96e-97 290
Msa0312080 MtrunA17_Chr4g0051631 94.737 133 7 0 1 133 1 133 4.86e-93 279
Msa0312080 MtrunA17_Chr4g0008361 91.729 133 11 0 1 133 1 133 1.04e-89 270
Msa0312080 MtrunA17_Chr4g0008401 92.481 133 10 0 1 133 1 133 1.33e-89 270
Msa0312080 MtrunA17_Chr4g0007371 90.909 132 12 0 1 132 1 132 2.98e-89 269
Msa0312080 MtrunA17_Chr1g0203181 90.226 133 13 0 1 133 1 133 3.00e-89 269
Msa0312080 MtrunA17_Chr7g0255791 89.474 133 14 0 1 133 1 133 3.73e-89 269
Msa0312080 MtrunA17_Chr8g0386781 88.722 133 15 0 1 133 1 133 1.46e-87 265
Msa0312080 MtrunA17_Chr3g0142731 89.630 135 12 1 1 133 1 135 2.51e-87 264
Msa0312080 MtrunA17_Chr8g0393021 85.821 134 18 1 1 133 1 134 1.73e-82 252
Msa0312080 MtrunA17_Chr8g0378821 46.667 135 70 1 1 133 1 135 3.70e-37 134
Msa0312080 MtrunA17_Chr3g0140821 44.444 135 73 1 1 133 1 135 1.71e-35 129
Msa0312080 MtrunA17_Chr4g0054511 43.704 135 74 1 1 133 1 135 7.15e-35 128
Msa0312080 MtrunA17_Chr6g0461281 44.118 136 73 1 1 133 1 136 2.11e-34 127
Msa0312080 MtrunA17_Chr7g0253411 42.963 135 75 1 1 133 1 135 2.24e-34 126
Msa0312080 MtrunA17_Chr1g0206881 42.963 135 75 1 1 133 1 135 3.78e-34 126
Msa0312080 MtrunA17_Chr2g0300671 42.105 133 74 2 1 133 1 130 3.68e-29 112
Msa0312080 MtrunA17_Chr2g0300491 42.537 134 72 3 1 133 1 130 4.61e-29 112
Msa0312080 MtrunA17_Chr7g0275431 36.296 135 83 2 2 134 3 136 9.74e-27 106
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0312080 AT1G20010.1 92.537 134 9 1 1 133 1 134 5.09e-91 274
Msa0312080 AT1G75780.1 91.791 134 10 1 1 133 1 134 6.24e-91 274
Msa0312080 AT5G44340.1 93.233 133 9 0 1 133 1 133 9.74e-91 273
Msa0312080 AT4G20890.1 91.729 133 11 0 1 133 1 133 1.70e-89 270
Msa0312080 AT5G12250.1 89.474 133 14 0 1 133 1 133 3.76e-89 269
Msa0312080 AT5G23860.2 90.226 133 13 0 1 133 1 133 4.83e-89 269
Msa0312080 AT5G23860.1 90.226 133 13 0 1 133 1 133 4.83e-89 269
Msa0312080 AT5G62690.1 90.977 133 12 0 1 133 1 133 4.91e-89 269
Msa0312080 AT5G62700.1 90.977 133 12 0 1 133 1 133 4.91e-89 269
Msa0312080 AT2G29550.1 91.729 133 11 0 1 133 1 133 1.49e-88 268
Msa0312080 AT5G19780.1 45.185 135 72 1 1 133 1 135 2.55e-36 132
Msa0312080 AT5G19770.1 45.185 135 72 1 1 133 1 135 2.55e-36 132
Msa0312080 AT1G64740.1 45.185 135 72 1 1 133 1 135 3.27e-36 132
Msa0312080 AT4G14960.1 44.444 135 73 1 1 133 1 135 1.24e-35 130
Msa0312080 AT4G14960.2 44.444 135 73 1 1 133 1 135 3.34e-35 129
Msa0312080 AT1G50010.1 43.704 135 74 1 1 133 1 135 2.20e-34 127
Msa0312080 AT1G04820.1 43.704 135 74 1 1 133 1 135 2.20e-34 127
Msa0312080 AT5G05620.1 37.037 135 82 2 2 134 3 136 3.49e-27 107
Msa0312080 AT3G61650.1 37.037 135 82 2 2 134 3 136 4.48e-27 107

Find 75 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAAAATTATGGAAAATTT+AGG 0.108177 2_4:-7072501 None:intergenic
GCAAATTACTTCCCAGAATT+TGG 0.120800 2_4:-7072582 None:intergenic
ACCAAATCGGCGCCAAATTC+TGG 0.170796 2_4:+7072570 Msa0312080:CDS
CGTTCCACGCGCTGTTCTTA+TGG 0.191476 2_4:+7072706 Msa0312080:CDS
ATCTGTCTTCTTTGTCTTGA+TGG 0.227904 2_4:-7073936 None:intergenic
ATTGAATTTGAAGGAATAAA+TGG 0.238771 2_4:-7072421 None:intergenic
AGTCTGGTGCTGGGAATAAT+TGG 0.257572 2_4:+7072810 Msa0312080:CDS
GGATCTTGAACCTGGTACTA+TGG 0.258147 2_4:+7072727 Msa0312080:CDS
GATGACAACCTCGACTTCTA+AGG 0.267849 2_4:+7073847 Msa0312080:CDS
TAGTGGTGGGGAGGATTTAA+AGG 0.289287 2_4:-7072390 None:intergenic
GGAAAATTATGGAAAATTTA+GGG 0.294511 2_4:-7072500 None:intergenic
CCCAGAATTTGGCGCCGATT+TGG 0.298478 2_4:-7072571 None:intergenic
TCTCCTGAATAACAGATTCT+TGG 0.302395 2_4:-7073811 None:intergenic
TCGCCAAGAATCTGTTATTC+AGG 0.306275 2_4:+7073808 Msa0312080:CDS
GATTCTTGGCGATAAGATTC+TGG 0.307582 2_4:-7073797 None:intergenic
GTATTCGGTCAGTCTGGTGC+TGG 0.372974 2_4:+7072800 Msa0312080:CDS
AGAAGTCGAGGTTGTCATCT+TGG 0.375138 2_4:-7073843 None:intergenic
TCCGTTAGATCCGGTCCGTT+TGG 0.380209 2_4:+7072752 Msa0312080:CDS
ATCAATAAGCTCAGCGCCTT+CGG 0.385551 2_4:-7072849 None:intergenic
CGCATTGTCCGCCTTGGATG+TGG 0.401436 2_4:-7072544 None:intergenic
GAAGTCGAGGTTGTCATCTT+GGG 0.401780 2_4:-7073842 None:intergenic
GCCTTCGGTATAATGACCTT+TGG 0.402288 2_4:-7072834 None:intergenic
AGAGGATTCATGTTTGTAGA+AGG 0.419287 2_4:-7073882 None:intergenic
CCAAATCGGCGCCAAATTCT+GGG 0.428149 2_4:+7072571 Msa0312080:CDS
GATACGTTCAAGTTGAAGTT+CGG 0.429716 2_4:-7072648 None:intergenic
GGTTCCCGCATTGTCCGCCT+TGG 0.446623 2_4:-7072550 None:intergenic
GTCTGGTGCTGGGAATAATT+GGG 0.450039 2_4:+7072811 Msa0312080:CDS
GTCTTCTTTGTCTTGATGGA+AGG 0.451516 2_4:-7073932 None:intergenic
TGGTGGGGAGGATTTAAAGG+AGG 0.463167 2_4:-7072387 None:intergenic
GAGAATTGTGATTGCTTGCA+AGG 0.495773 2_4:+7072902 Msa0312080:CDS
GGACAATGCGGGAACCAAAT+CGG 0.495801 2_4:+7072557 Msa0312080:CDS
TGTAAAAGGAGGGAAGGAAC+GGG 0.496181 2_4:-7072460 None:intergenic
AGATTCTGGTAAAGCAAAGT+TGG 0.500254 2_4:-7073783 None:intergenic
AGGAGGCTGTGATTCTAGAT+TGG 0.501799 2_4:-7073962 None:intergenic
TTCTTTGTCTTGATGGAAGG+TGG 0.503502 2_4:-7073929 None:intergenic
TGCTTCTTGTGAATCTGAAG+AGG 0.503979 2_4:-7073900 None:intergenic
GTGGGGAGGATTTAAAGGAG+GGG 0.505927 2_4:-7072385 None:intergenic
GGATTCATGTTTGTAGAAGG+TGG 0.507051 2_4:-7073879 None:intergenic
ACATCCAAGGCGGACAATGC+GGG 0.508092 2_4:+7072546 Msa0312080:CDS
TATTCGGTCAGTCTGGTGCT+GGG 0.523291 2_4:+7072801 Msa0312080:CDS
ATGTAAAAGGAGGGAAGGAA+CGG 0.524028 2_4:-7072461 None:intergenic
TGGAACGTACCTTCCACCAC+TGG 0.531376 2_4:-7072690 None:intergenic
ACCAAACGGACCGGATCTAA+CGG 0.534715 2_4:-7072753 None:intergenic
GGTGGGGAGGATTTAAAGGA+GGG 0.543741 2_4:-7072386 None:intergenic
TGACCGAATACAAAATTATC+CGG 0.543879 2_4:-7072788 None:intergenic
CTAACGGAATCCATAGTACC+AGG 0.550782 2_4:-7072737 None:intergenic
GAAGTAATTTGCGACGAGCA+CGG 0.550951 2_4:+7072593 Msa0312080:CDS
ATGACAACCTCGACTTCTAA+GGG 0.551737 2_4:+7073848 Msa0312080:CDS
TTTGAAGGAATAAATGGAAG+GGG 0.555985 2_4:-7072415 None:intergenic
GGACGAAAGATCTGACCAAA+CGG 0.560082 2_4:-7072767 None:intergenic
ACTATGGATTCCGTTAGATC+CGG 0.561697 2_4:+7072743 Msa0312080:CDS
GTTTGGTCAGATCTTTCGTC+CGG 0.564080 2_4:+7072769 Msa0312080:CDS
TTGTGATGTAAAAGGAGGGA+AGG 0.566392 2_4:-7072466 None:intergenic
GTTCTTATGGATCTTGAACC+TGG 0.570029 2_4:+7072719 Msa0312080:CDS
GCCAAAGGTCATTATACCGA+AGG 0.575459 2_4:+7072833 Msa0312080:CDS
GCTGGGAATAATTGGGCCAA+AGG 0.582199 2_4:+7072818 Msa0312080:CDS
AATTTGAAGGAATAAATGGA+AGG 0.586500 2_4:-7072417 None:intergenic
AAAGATCTGACCAAACGGAC+CGG 0.588290 2_4:-7072762 None:intergenic
CACATCCAAGGCGGACAATG+CGG 0.592637 2_4:+7072545 Msa0312080:CDS
AGAGAAATCCTCCACATCCA+AGG 0.593831 2_4:+7072533 Msa0312080:CDS
ATTTGAAGGAATAAATGGAA+GGG 0.596849 2_4:-7072416 None:intergenic
AAAAGGAGGGAAGGAACGGG+TGG 0.602432 2_4:-7072457 None:intergenic
ATTGTCCGCCTTGGATGTGG+AGG 0.602768 2_4:-7072541 None:intergenic
TAATTGTGGGGTTGTACTCG+AGG 0.611164 2_4:-7072354 None:intergenic
ACAATGAAGCCAGTGGTGGA+AGG 0.613831 2_4:+7072681 Msa0312080:CDS
TTTGTTGTGATGTAAAAGGA+GGG 0.618219 2_4:-7072470 None:intergenic
TTGAAGGAATAAATGGAAGG+GGG 0.623829 2_4:-7072414 None:intergenic
TATTACAATGAAGCCAGTGG+TGG 0.624350 2_4:+7072677 Msa0312080:CDS
AATTGTGGGGTTGTACTCGA+GGG 0.651489 2_4:-7072353 None:intergenic
AAGTTGGCATAATAATGAGA+AGG 0.653463 2_4:-7073767 None:intergenic
GTCTATTACAATGAAGCCAG+TGG 0.654009 2_4:+7072674 Msa0312080:CDS
AGATCCATAAGAACAGCGCG+TGG 0.666492 2_4:-7072710 None:intergenic
GATCACACCGGAAAATACAA+CGG 0.700192 2_4:+7072620 Msa0312080:CDS
GAAATCCTCCACATCCAAGG+CGG 0.734127 2_4:+7072536 Msa0312080:CDS
GAGCACGGAATTGATCACAC+CGG 0.781288 2_4:+7072608 Msa0312080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGAATTAATAGTATTATT+TGG + chr2_4:7073370-7073389 Msa0312080:intron 10.0%
!! AATGAATTAATAGTATTATT+TGG + chr2_4:7073370-7073389 Msa0312080:intron 10.0%
!! TAAATGATTATGAATTGTTA+TGG + chr2_4:7073403-7073422 Msa0312080:intron 15.0%
!! TAAATGATTATGAATTGTTA+TGG + chr2_4:7073403-7073422 Msa0312080:intron 15.0%
!! ATTGAATTTGAAGGAATAAA+TGG - chr2_4:7072424-7072443 None:intergenic 20.0%
!! GGAAAATTATGGAAAATTTA+GGG - chr2_4:7072503-7072522 None:intergenic 20.0%
!! TACTATTAATTCATTCCAAT+CGG - chr2_4:7073365-7073384 None:intergenic 20.0%
!!! TGATTTTTATTGTTTTTGTG+TGG + chr2_4:7073434-7073453 Msa0312080:intron 20.0%
!! ATTGAATTTGAAGGAATAAA+TGG - chr2_4:7072424-7072443 None:intergenic 20.0%
!! GGAAAATTATGGAAAATTTA+GGG - chr2_4:7072503-7072522 None:intergenic 20.0%
!! TACTATTAATTCATTCCAAT+CGG - chr2_4:7073365-7073384 None:intergenic 20.0%
!!! TGATTTTTATTGTTTTTGTG+TGG + chr2_4:7073434-7073453 Msa0312080:intron 20.0%
! ATTTGAAGGAATAAATGGAA+GGG - chr2_4:7072419-7072438 None:intergenic 25.0%
! AATTTGAAGGAATAAATGGA+AGG - chr2_4:7072420-7072439 None:intergenic 25.0%
!!! GATGTTTTGATTGAATTTGA+AGG - chr2_4:7072433-7072452 None:intergenic 25.0%
!!! TGATTTTGTTGTGATGTAAA+AGG - chr2_4:7072477-7072496 None:intergenic 25.0%
! GGGAAAATTATGGAAAATTT+AGG - chr2_4:7072504-7072523 None:intergenic 25.0%
!!! CATCGTTTTTGTTTTTAGTA+AGG + chr2_4:7072943-7072962 Msa0312080:intron 25.0%
!!! CGATGTTGAATATCATTTTT+TGG + chr2_4:7073195-7073214 Msa0312080:intron 25.0%
! AAAAAACTCGCAACATAAAA+CGG - chr2_4:7073278-7073297 None:intergenic 25.0%
! ATTTGAAGGAATAAATGGAA+GGG - chr2_4:7072419-7072438 None:intergenic 25.0%
! AATTTGAAGGAATAAATGGA+AGG - chr2_4:7072420-7072439 None:intergenic 25.0%
!!! GATGTTTTGATTGAATTTGA+AGG - chr2_4:7072433-7072452 None:intergenic 25.0%
!!! TGATTTTGTTGTGATGTAAA+AGG - chr2_4:7072477-7072496 None:intergenic 25.0%
! GGGAAAATTATGGAAAATTT+AGG - chr2_4:7072504-7072523 None:intergenic 25.0%
!!! CATCGTTTTTGTTTTTAGTA+AGG + chr2_4:7072943-7072962 Msa0312080:intron 25.0%
!!! CGATGTTGAATATCATTTTT+TGG + chr2_4:7073195-7073214 Msa0312080:intron 25.0%
! AAAAAACTCGCAACATAAAA+CGG - chr2_4:7073278-7073297 None:intergenic 25.0%
TTTGAAGGAATAAATGGAAG+GGG - chr2_4:7072418-7072437 None:intergenic 30.0%
! TTTGTTGTGATGTAAAAGGA+GGG - chr2_4:7072473-7072492 None:intergenic 30.0%
!! TTTTGTTGTGATGTAAAAGG+AGG - chr2_4:7072474-7072493 None:intergenic 30.0%
! TCATTTTCTCGGGAAAATTA+TGG - chr2_4:7072514-7072533 None:intergenic 30.0%
TGACCGAATACAAAATTATC+CGG - chr2_4:7072791-7072810 None:intergenic 30.0%
ATAATTGCGATGTTGAATTG+CGG + chr2_4:7073009-7073028 Msa0312080:intron 30.0%
GAAAATTATGATTGCTTGCA+AGG + chr2_4:7073244-7073263 Msa0312080:intron 30.0%
!!! TTTTATTGTTTTTGTGTGGC+AGG + chr2_4:7073438-7073457 Msa0312080:intron 30.0%
! ATTTCAAGTGTGTCATTCAT+TGG + chr2_4:7073461-7073480 Msa0312080:intron 30.0%
! TTTCAAGTGTGTCATTCATT+GGG + chr2_4:7073462-7073481 Msa0312080:intron 30.0%
!! TTTCTTTTCTTTTTGGTCGA+AGG - chr2_4:7073596-7073615 None:intergenic 30.0%
GACCAAAAAGAAAAGAAATC+AGG + chr2_4:7073598-7073617 Msa0312080:intron 30.0%
! GTCCTGATTTCTTTTCTTTT+TGG - chr2_4:7073603-7073622 None:intergenic 30.0%
AAGTTGGCATAATAATGAGA+AGG - chr2_4:7073770-7073789 None:intergenic 30.0%
TTTGAAGGAATAAATGGAAG+GGG - chr2_4:7072418-7072437 None:intergenic 30.0%
! TTTGTTGTGATGTAAAAGGA+GGG - chr2_4:7072473-7072492 None:intergenic 30.0%
!! TTTTGTTGTGATGTAAAAGG+AGG - chr2_4:7072474-7072493 None:intergenic 30.0%
! TCATTTTCTCGGGAAAATTA+TGG - chr2_4:7072514-7072533 None:intergenic 30.0%
TGACCGAATACAAAATTATC+CGG - chr2_4:7072791-7072810 None:intergenic 30.0%
ATAATTGCGATGTTGAATTG+CGG + chr2_4:7073009-7073028 Msa0312080:intron 30.0%
GAAAATTATGATTGCTTGCA+AGG + chr2_4:7073244-7073263 Msa0312080:intron 30.0%
!!! TTTTATTGTTTTTGTGTGGC+AGG + chr2_4:7073438-7073457 Msa0312080:intron 30.0%
! ATTTCAAGTGTGTCATTCAT+TGG + chr2_4:7073461-7073480 Msa0312080:intron 30.0%
! TTTCAAGTGTGTCATTCATT+GGG + chr2_4:7073462-7073481 Msa0312080:intron 30.0%
!! TTTCTTTTCTTTTTGGTCGA+AGG - chr2_4:7073596-7073615 None:intergenic 30.0%
GACCAAAAAGAAAAGAAATC+AGG + chr2_4:7073598-7073617 Msa0312080:intron 30.0%
! GTCCTGATTTCTTTTCTTTT+TGG - chr2_4:7073603-7073622 None:intergenic 30.0%
AAGTTGGCATAATAATGAGA+AGG - chr2_4:7073770-7073789 None:intergenic 30.0%
! AGGGGTTTTTGTGTAATTGT+GGG - chr2_4:7072370-7072389 None:intergenic 35.0%
TTGAAGGAATAAATGGAAGG+GGG - chr2_4:7072417-7072436 None:intergenic 35.0%
! AGGATTTCTCTCATTTTCTC+GGG - chr2_4:7072524-7072543 None:intergenic 35.0%
! GAGGATTTCTCTCATTTTCT+CGG - chr2_4:7072525-7072544 None:intergenic 35.0%
GCAAATTACTTCCCAGAATT+TGG - chr2_4:7072585-7072604 None:intergenic 35.0%
!! GATACGTTCAAGTTGAAGTT+CGG - chr2_4:7072651-7072670 None:intergenic 35.0%
! CGTCCGGATAATTTTGTATT+CGG + chr2_4:7072785-7072804 Msa0312080:CDS 35.0%
! AATTTTGTATTCGGTCAGTC+TGG + chr2_4:7072794-7072813 Msa0312080:CDS 35.0%
! TATATTGTGAGTTTGTTCGC+AGG + chr2_4:7073043-7073062 Msa0312080:intron 35.0%
TTCACTCATTCAGATCGAAT+AGG - chr2_4:7073127-7073146 None:intergenic 35.0%
!!! ATTTTTTGGCGATGTTGAAC+TGG + chr2_4:7073209-7073228 Msa0312080:intron 35.0%
TTTCGATGAATTTCACCGAT+TGG + chr2_4:7073347-7073366 Msa0312080:intron 35.0%
! CTTTTGAGCTGAGTAAAACT+AGG - chr2_4:7073746-7073765 None:intergenic 35.0%
AGATTCTGGTAAAGCAAAGT+TGG - chr2_4:7073786-7073805 None:intergenic 35.0%
TCTCCTGAATAACAGATTCT+TGG - chr2_4:7073814-7073833 None:intergenic 35.0%
AGAGGATTCATGTTTGTAGA+AGG - chr2_4:7073885-7073904 None:intergenic 35.0%
ATCTGTCTTCTTTGTCTTGA+TGG - chr2_4:7073939-7073958 None:intergenic 35.0%
! AGGGGTTTTTGTGTAATTGT+GGG - chr2_4:7072370-7072389 None:intergenic 35.0%
TTGAAGGAATAAATGGAAGG+GGG - chr2_4:7072417-7072436 None:intergenic 35.0%
! AGGATTTCTCTCATTTTCTC+GGG - chr2_4:7072524-7072543 None:intergenic 35.0%
! GAGGATTTCTCTCATTTTCT+CGG - chr2_4:7072525-7072544 None:intergenic 35.0%
GCAAATTACTTCCCAGAATT+TGG - chr2_4:7072585-7072604 None:intergenic 35.0%
!! GATACGTTCAAGTTGAAGTT+CGG - chr2_4:7072651-7072670 None:intergenic 35.0%
! CGTCCGGATAATTTTGTATT+CGG + chr2_4:7072785-7072804 Msa0312080:CDS 35.0%
! AATTTTGTATTCGGTCAGTC+TGG + chr2_4:7072794-7072813 Msa0312080:CDS 35.0%
! TATATTGTGAGTTTGTTCGC+AGG + chr2_4:7073043-7073062 Msa0312080:intron 35.0%
TTCACTCATTCAGATCGAAT+AGG - chr2_4:7073127-7073146 None:intergenic 35.0%
!!! ATTTTTTGGCGATGTTGAAC+TGG + chr2_4:7073209-7073228 Msa0312080:intron 35.0%
TTTCGATGAATTTCACCGAT+TGG + chr2_4:7073347-7073366 Msa0312080:intron 35.0%
! CTTTTGAGCTGAGTAAAACT+AGG - chr2_4:7073746-7073765 None:intergenic 35.0%
AGATTCTGGTAAAGCAAAGT+TGG - chr2_4:7073786-7073805 None:intergenic 35.0%
TCTCCTGAATAACAGATTCT+TGG - chr2_4:7073814-7073833 None:intergenic 35.0%
AGAGGATTCATGTTTGTAGA+AGG - chr2_4:7073885-7073904 None:intergenic 35.0%
ATCTGTCTTCTTTGTCTTGA+TGG - chr2_4:7073939-7073958 None:intergenic 35.0%
!!! ACTCGAGGGTATTTTTGGAA+GGG - chr2_4:7072342-7072361 None:intergenic 40.0%
!!! TACTCGAGGGTATTTTTGGA+AGG - chr2_4:7072343-7072362 None:intergenic 40.0%
!!! GTTGTACTCGAGGGTATTTT+TGG - chr2_4:7072347-7072366 None:intergenic 40.0%
! GGGGTTTTTGTGTAATTGTG+GGG - chr2_4:7072369-7072388 None:intergenic 40.0%
! GAGGGGTTTTTGTGTAATTG+TGG - chr2_4:7072371-7072390 None:intergenic 40.0%
AATAAATGGAAGGGGGTTAG+TGG - chr2_4:7072410-7072429 None:intergenic 40.0%
ATGTAAAAGGAGGGAAGGAA+CGG - chr2_4:7072464-7072483 None:intergenic 40.0%
TTGTGATGTAAAAGGAGGGA+AGG - chr2_4:7072469-7072488 None:intergenic 40.0%
GATCACACCGGAAAATACAA+CGG + chr2_4:7072620-7072639 Msa0312080:CDS 40.0%
GTCTATTACAATGAAGCCAG+TGG + chr2_4:7072674-7072693 Msa0312080:CDS 40.0%
TATTACAATGAAGCCAGTGG+TGG + chr2_4:7072677-7072696 Msa0312080:CDS 40.0%
GTTCTTATGGATCTTGAACC+TGG + chr2_4:7072719-7072738 Msa0312080:CDS 40.0%
ACTATGGATTCCGTTAGATC+CGG + chr2_4:7072743-7072762 Msa0312080:CDS 40.0%
GAGAATTGTGATTGCTTGCA+AGG + chr2_4:7072902-7072921 Msa0312080:CDS 40.0%
CATTGCTAAGAACGAACGAA+AGG - chr2_4:7073312-7073331 None:intergenic 40.0%
! GTTGGAGAATCGACTTCTTA+TGG - chr2_4:7073690-7073709 None:intergenic 40.0%
GTAAAACTAGGAGTGAAAGC+TGG - chr2_4:7073734-7073753 None:intergenic 40.0%
GATTCTTGGCGATAAGATTC+TGG - chr2_4:7073800-7073819 None:intergenic 40.0%
TCGCCAAGAATCTGTTATTC+AGG + chr2_4:7073808-7073827 Msa0312080:CDS 40.0%
ATGACAACCTCGACTTCTAA+GGG + chr2_4:7073848-7073867 Msa0312080:CDS 40.0%
! TTCTTTTCCCTTAGAAGTCG+AGG - chr2_4:7073858-7073877 None:intergenic 40.0%
GGATTCATGTTTGTAGAAGG+TGG - chr2_4:7073882-7073901 None:intergenic 40.0%
TGCTTCTTGTGAATCTGAAG+AGG - chr2_4:7073903-7073922 None:intergenic 40.0%
TTCTTTGTCTTGATGGAAGG+TGG - chr2_4:7073932-7073951 None:intergenic 40.0%
GTCTTCTTTGTCTTGATGGA+AGG - chr2_4:7073935-7073954 None:intergenic 40.0%
!!! ACTCGAGGGTATTTTTGGAA+GGG - chr2_4:7072342-7072361 None:intergenic 40.0%
!!! TACTCGAGGGTATTTTTGGA+AGG - chr2_4:7072343-7072362 None:intergenic 40.0%
!!! GTTGTACTCGAGGGTATTTT+TGG - chr2_4:7072347-7072366 None:intergenic 40.0%
! GGGGTTTTTGTGTAATTGTG+GGG - chr2_4:7072369-7072388 None:intergenic 40.0%
! GAGGGGTTTTTGTGTAATTG+TGG - chr2_4:7072371-7072390 None:intergenic 40.0%
AATAAATGGAAGGGGGTTAG+TGG - chr2_4:7072410-7072429 None:intergenic 40.0%
ATGTAAAAGGAGGGAAGGAA+CGG - chr2_4:7072464-7072483 None:intergenic 40.0%
TTGTGATGTAAAAGGAGGGA+AGG - chr2_4:7072469-7072488 None:intergenic 40.0%
GATCACACCGGAAAATACAA+CGG + chr2_4:7072620-7072639 Msa0312080:CDS 40.0%
GTCTATTACAATGAAGCCAG+TGG + chr2_4:7072674-7072693 Msa0312080:CDS 40.0%
TATTACAATGAAGCCAGTGG+TGG + chr2_4:7072677-7072696 Msa0312080:CDS 40.0%
GTTCTTATGGATCTTGAACC+TGG + chr2_4:7072719-7072738 Msa0312080:CDS 40.0%
ACTATGGATTCCGTTAGATC+CGG + chr2_4:7072743-7072762 Msa0312080:CDS 40.0%
GAGAATTGTGATTGCTTGCA+AGG + chr2_4:7072902-7072921 Msa0312080:CDS 40.0%
CATTGCTAAGAACGAACGAA+AGG - chr2_4:7073312-7073331 None:intergenic 40.0%
! GTTGGAGAATCGACTTCTTA+TGG - chr2_4:7073690-7073709 None:intergenic 40.0%
GTAAAACTAGGAGTGAAAGC+TGG - chr2_4:7073734-7073753 None:intergenic 40.0%
GATTCTTGGCGATAAGATTC+TGG - chr2_4:7073800-7073819 None:intergenic 40.0%
TCGCCAAGAATCTGTTATTC+AGG + chr2_4:7073808-7073827 Msa0312080:CDS 40.0%
ATGACAACCTCGACTTCTAA+GGG + chr2_4:7073848-7073867 Msa0312080:CDS 40.0%
! TTCTTTTCCCTTAGAAGTCG+AGG - chr2_4:7073858-7073877 None:intergenic 40.0%
GGATTCATGTTTGTAGAAGG+TGG - chr2_4:7073882-7073901 None:intergenic 40.0%
TGCTTCTTGTGAATCTGAAG+AGG - chr2_4:7073903-7073922 None:intergenic 40.0%
TTCTTTGTCTTGATGGAAGG+TGG - chr2_4:7073932-7073951 None:intergenic 40.0%
GTCTTCTTTGTCTTGATGGA+AGG - chr2_4:7073935-7073954 None:intergenic 40.0%
AATTGTGGGGTTGTACTCGA+GGG - chr2_4:7072356-7072375 None:intergenic 45.0%
TAATTGTGGGGTTGTACTCG+AGG - chr2_4:7072357-7072376 None:intergenic 45.0%
! TAGTGGTGGGGAGGATTTAA+AGG - chr2_4:7072393-7072412 None:intergenic 45.0%
TGTAAAAGGAGGGAAGGAAC+GGG - chr2_4:7072463-7072482 None:intergenic 45.0%
AGAGAAATCCTCCACATCCA+AGG + chr2_4:7072533-7072552 Msa0312080:CDS 45.0%
! GAAGTAATTTGCGACGAGCA+CGG + chr2_4:7072593-7072612 Msa0312080:CDS 45.0%
! GGAATCGCCGTTGTATTTTC+CGG - chr2_4:7072630-7072649 None:intergenic 45.0%
GGATCTTGAACCTGGTACTA+TGG + chr2_4:7072727-7072746 Msa0312080:CDS 45.0%
CTAACGGAATCCATAGTACC+AGG - chr2_4:7072740-7072759 None:intergenic 45.0%
AAAGATCTGACCAAACGGAC+CGG - chr2_4:7072765-7072784 None:intergenic 45.0%
GGACGAAAGATCTGACCAAA+CGG - chr2_4:7072770-7072789 None:intergenic 45.0%
GTTTGGTCAGATCTTTCGTC+CGG + chr2_4:7072769-7072788 Msa0312080:CDS 45.0%
! AGTCTGGTGCTGGGAATAAT+TGG + chr2_4:7072810-7072829 Msa0312080:CDS 45.0%
! GTCTGGTGCTGGGAATAATT+GGG + chr2_4:7072811-7072830 Msa0312080:CDS 45.0%
GCCAAAGGTCATTATACCGA+AGG + chr2_4:7072833-7072852 Msa0312080:CDS 45.0%
GCCTTCGGTATAATGACCTT+TGG - chr2_4:7072837-7072856 None:intergenic 45.0%
ATCAATAAGCTCAGCGCCTT+CGG - chr2_4:7072852-7072871 None:intergenic 45.0%
! CAAGTGTGTCATTCATTGGG+AGG + chr2_4:7073465-7073484 Msa0312080:intron 45.0%
GCAGAAACAGCTGAAGAGAA+TGG + chr2_4:7073626-7073645 Msa0312080:intron 45.0%
! TCAAGCATCCAAAGAGCACA+AGG + chr2_4:7073659-7073678 Msa0312080:intron 45.0%
GAAGTCGAGGTTGTCATCTT+GGG - chr2_4:7073845-7073864 None:intergenic 45.0%
AGAAGTCGAGGTTGTCATCT+TGG - chr2_4:7073846-7073865 None:intergenic 45.0%
GATGACAACCTCGACTTCTA+AGG + chr2_4:7073847-7073866 Msa0312080:CDS 45.0%
AATTGTGGGGTTGTACTCGA+GGG - chr2_4:7072356-7072375 None:intergenic 45.0%
TAATTGTGGGGTTGTACTCG+AGG - chr2_4:7072357-7072376 None:intergenic 45.0%
! TAGTGGTGGGGAGGATTTAA+AGG - chr2_4:7072393-7072412 None:intergenic 45.0%
TGTAAAAGGAGGGAAGGAAC+GGG - chr2_4:7072463-7072482 None:intergenic 45.0%
AGAGAAATCCTCCACATCCA+AGG + chr2_4:7072533-7072552 Msa0312080:CDS 45.0%
! GAAGTAATTTGCGACGAGCA+CGG + chr2_4:7072593-7072612 Msa0312080:CDS 45.0%
! GGAATCGCCGTTGTATTTTC+CGG - chr2_4:7072630-7072649 None:intergenic 45.0%
GGATCTTGAACCTGGTACTA+TGG + chr2_4:7072727-7072746 Msa0312080:CDS 45.0%
CTAACGGAATCCATAGTACC+AGG - chr2_4:7072740-7072759 None:intergenic 45.0%
AAAGATCTGACCAAACGGAC+CGG - chr2_4:7072765-7072784 None:intergenic 45.0%
GGACGAAAGATCTGACCAAA+CGG - chr2_4:7072770-7072789 None:intergenic 45.0%
GTTTGGTCAGATCTTTCGTC+CGG + chr2_4:7072769-7072788 Msa0312080:CDS 45.0%
! AGTCTGGTGCTGGGAATAAT+TGG + chr2_4:7072810-7072829 Msa0312080:CDS 45.0%
! GTCTGGTGCTGGGAATAATT+GGG + chr2_4:7072811-7072830 Msa0312080:CDS 45.0%
GCCAAAGGTCATTATACCGA+AGG + chr2_4:7072833-7072852 Msa0312080:CDS 45.0%
GCCTTCGGTATAATGACCTT+TGG - chr2_4:7072837-7072856 None:intergenic 45.0%
ATCAATAAGCTCAGCGCCTT+CGG - chr2_4:7072852-7072871 None:intergenic 45.0%
! CAAGTGTGTCATTCATTGGG+AGG + chr2_4:7073465-7073484 Msa0312080:intron 45.0%
GCAGAAACAGCTGAAGAGAA+TGG + chr2_4:7073626-7073645 Msa0312080:intron 45.0%
! TCAAGCATCCAAAGAGCACA+AGG + chr2_4:7073659-7073678 Msa0312080:intron 45.0%
GAAGTCGAGGTTGTCATCTT+GGG - chr2_4:7073845-7073864 None:intergenic 45.0%
AGAAGTCGAGGTTGTCATCT+TGG - chr2_4:7073846-7073865 None:intergenic 45.0%
GATGACAACCTCGACTTCTA+AGG + chr2_4:7073847-7073866 Msa0312080:CDS 45.0%
GTGGGGAGGATTTAAAGGAG+GGG - chr2_4:7072388-7072407 None:intergenic 50.0%
GGTGGGGAGGATTTAAAGGA+GGG - chr2_4:7072389-7072408 None:intergenic 50.0%
TGGTGGGGAGGATTTAAAGG+AGG - chr2_4:7072390-7072409 None:intergenic 50.0%
! AATGGAAGGGGGTTAGTGGT+GGG - chr2_4:7072406-7072425 None:intergenic 50.0%
! AAATGGAAGGGGGTTAGTGG+TGG - chr2_4:7072407-7072426 None:intergenic 50.0%
GAAATCCTCCACATCCAAGG+CGG + chr2_4:7072536-7072555 Msa0312080:CDS 50.0%
GGACAATGCGGGAACCAAAT+CGG + chr2_4:7072557-7072576 Msa0312080:CDS 50.0%
ACCAAATCGGCGCCAAATTC+TGG + chr2_4:7072570-7072589 Msa0312080:CDS 50.0%
CCAAATCGGCGCCAAATTCT+GGG + chr2_4:7072571-7072590 Msa0312080:CDS 50.0%
GAGCACGGAATTGATCACAC+CGG + chr2_4:7072608-7072627 Msa0312080:CDS 50.0%
! ACAATGAAGCCAGTGGTGGA+AGG + chr2_4:7072681-7072700 Msa0312080:CDS 50.0%
AGATCCATAAGAACAGCGCG+TGG - chr2_4:7072713-7072732 None:intergenic 50.0%
ACCAAACGGACCGGATCTAA+CGG - chr2_4:7072756-7072775 None:intergenic 50.0%
TATTCGGTCAGTCTGGTGCT+GGG + chr2_4:7072801-7072820 Msa0312080:CDS 50.0%
GCTGGGAATAATTGGGCCAA+AGG + chr2_4:7072818-7072837 Msa0312080:CDS 50.0%
! TGGTTCTGCCTTGTGCTCTT+TGG - chr2_4:7073670-7073689 None:intergenic 50.0%
! AAGTCGATTCTCCAACACCC+CGG + chr2_4:7073694-7073713 Msa0312080:intron 50.0%
GTGGGGAGGATTTAAAGGAG+GGG - chr2_4:7072388-7072407 None:intergenic 50.0%
GGTGGGGAGGATTTAAAGGA+GGG - chr2_4:7072389-7072408 None:intergenic 50.0%
TGGTGGGGAGGATTTAAAGG+AGG - chr2_4:7072390-7072409 None:intergenic 50.0%
! AATGGAAGGGGGTTAGTGGT+GGG - chr2_4:7072406-7072425 None:intergenic 50.0%
! AAATGGAAGGGGGTTAGTGG+TGG - chr2_4:7072407-7072426 None:intergenic 50.0%
GAAATCCTCCACATCCAAGG+CGG + chr2_4:7072536-7072555 Msa0312080:CDS 50.0%
GGACAATGCGGGAACCAAAT+CGG + chr2_4:7072557-7072576 Msa0312080:CDS 50.0%
ACCAAATCGGCGCCAAATTC+TGG + chr2_4:7072570-7072589 Msa0312080:CDS 50.0%
CCAAATCGGCGCCAAATTCT+GGG + chr2_4:7072571-7072590 Msa0312080:CDS 50.0%
GAGCACGGAATTGATCACAC+CGG + chr2_4:7072608-7072627 Msa0312080:CDS 50.0%
! ACAATGAAGCCAGTGGTGGA+AGG + chr2_4:7072681-7072700 Msa0312080:CDS 50.0%
AGATCCATAAGAACAGCGCG+TGG - chr2_4:7072713-7072732 None:intergenic 50.0%
ACCAAACGGACCGGATCTAA+CGG - chr2_4:7072756-7072775 None:intergenic 50.0%
TATTCGGTCAGTCTGGTGCT+GGG + chr2_4:7072801-7072820 Msa0312080:CDS 50.0%
GCTGGGAATAATTGGGCCAA+AGG + chr2_4:7072818-7072837 Msa0312080:CDS 50.0%
! TGGTTCTGCCTTGTGCTCTT+TGG - chr2_4:7073670-7073689 None:intergenic 50.0%
! AAGTCGATTCTCCAACACCC+CGG + chr2_4:7073694-7073713 Msa0312080:intron 50.0%
! ATGGAAGGGGGTTAGTGGTG+GGG - chr2_4:7072405-7072424 None:intergenic 55.0%
AAAAGGAGGGAAGGAACGGG+TGG - chr2_4:7072460-7072479 None:intergenic 55.0%
ATTGTCCGCCTTGGATGTGG+AGG - chr2_4:7072544-7072563 None:intergenic 55.0%
CACATCCAAGGCGGACAATG+CGG + chr2_4:7072545-7072564 Msa0312080:CDS 55.0%
ACATCCAAGGCGGACAATGC+GGG + chr2_4:7072546-7072565 Msa0312080:CDS 55.0%
!! CCCAGAATTTGGCGCCGATT+TGG - chr2_4:7072574-7072593 None:intergenic 55.0%
TGGAACGTACCTTCCACCAC+TGG - chr2_4:7072693-7072712 None:intergenic 55.0%
CGTTCCACGCGCTGTTCTTA+TGG + chr2_4:7072706-7072725 Msa0312080:CDS 55.0%
TCCGTTAGATCCGGTCCGTT+TGG + chr2_4:7072752-7072771 Msa0312080:CDS 55.0%
GTATTCGGTCAGTCTGGTGC+TGG + chr2_4:7072800-7072819 Msa0312080:CDS 55.0%
AGGAGTGAAAGCTGGAACGC+TGG - chr2_4:7073726-7073745 None:intergenic 55.0%
! ATGGAAGGGGGTTAGTGGTG+GGG - chr2_4:7072405-7072424 None:intergenic 55.0%
AAAAGGAGGGAAGGAACGGG+TGG - chr2_4:7072460-7072479 None:intergenic 55.0%
ATTGTCCGCCTTGGATGTGG+AGG - chr2_4:7072544-7072563 None:intergenic 55.0%
CACATCCAAGGCGGACAATG+CGG + chr2_4:7072545-7072564 Msa0312080:CDS 55.0%
ACATCCAAGGCGGACAATGC+GGG + chr2_4:7072546-7072565 Msa0312080:CDS 55.0%
!! CCCAGAATTTGGCGCCGATT+TGG - chr2_4:7072574-7072593 None:intergenic 55.0%
TGGAACGTACCTTCCACCAC+TGG - chr2_4:7072693-7072712 None:intergenic 55.0%
CGTTCCACGCGCTGTTCTTA+TGG + chr2_4:7072706-7072725 Msa0312080:CDS 55.0%
TCCGTTAGATCCGGTCCGTT+TGG + chr2_4:7072752-7072771 Msa0312080:CDS 55.0%
GTATTCGGTCAGTCTGGTGC+TGG + chr2_4:7072800-7072819 Msa0312080:CDS 55.0%
AGGAGTGAAAGCTGGAACGC+TGG - chr2_4:7073726-7073745 None:intergenic 55.0%
CGCATTGTCCGCCTTGGATG+TGG - chr2_4:7072547-7072566 None:intergenic 60.0%
TGGAACGCTGGAGAATGCCG+GGG - chr2_4:7073714-7073733 None:intergenic 60.0%
CTGGAACGCTGGAGAATGCC+GGG - chr2_4:7073715-7073734 None:intergenic 60.0%
GCTGGAACGCTGGAGAATGC+CGG - chr2_4:7073716-7073735 None:intergenic 60.0%
CGCATTGTCCGCCTTGGATG+TGG - chr2_4:7072547-7072566 None:intergenic 60.0%
TGGAACGCTGGAGAATGCCG+GGG - chr2_4:7073714-7073733 None:intergenic 60.0%
CTGGAACGCTGGAGAATGCC+GGG - chr2_4:7073715-7073734 None:intergenic 60.0%
GCTGGAACGCTGGAGAATGC+CGG - chr2_4:7073716-7073735 None:intergenic 60.0%
! GAAGGGGGTTAGTGGTGGGG+AGG - chr2_4:7072402-7072421 None:intergenic 65.0%
GGTTCCCGCATTGTCCGCCT+TGG - chr2_4:7072553-7072572 None:intergenic 65.0%
GCTGGAGAATGCCGGGGTGT+TGG - chr2_4:7073708-7073727 None:intergenic 65.0%
! GAAGGGGGTTAGTGGTGGGG+AGG - chr2_4:7072402-7072421 None:intergenic 65.0%
GGTTCCCGCATTGTCCGCCT+TGG - chr2_4:7072553-7072572 None:intergenic 65.0%
GCTGGAGAATGCCGGGGTGT+TGG - chr2_4:7073708-7073727 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 7072332 7073970 7072332 ID=Msa0312080;Name=Msa0312080
chr2_4 mRNA 7072332 7073970 7072332 ID=Msa0312080-mRNA-1;Parent=Msa0312080;Name=Msa0312080-mRNA-1;_AED=0.17;_eAED=0.17;_QI=198|0|0.5|0.5|1|1|2|0|209
chr2_4 exon 7072332 7072923 7072332 ID=Msa0312080-mRNA-1:exon:2702;Parent=Msa0312080-mRNA-1
chr2_4 exon 7073735 7073970 7073735 ID=Msa0312080-mRNA-1:exon:2703;Parent=Msa0312080-mRNA-1
chr2_4 five_prime_UTR 7072332 7072529 7072332 ID=Msa0312080-mRNA-1:five_prime_utr;Parent=Msa0312080-mRNA-1
chr2_4 CDS 7072530 7072923 7072530 ID=Msa0312080-mRNA-1:cds;Parent=Msa0312080-mRNA-1
chr2_4 CDS 7073735 7073970 7073735 ID=Msa0312080-mRNA-1:cds;Parent=Msa0312080-mRNA-1
Gene Sequence

>Msa0312080

ATGAGAGAAATCCTCCACATCCAAGGCGGACAATGCGGGAACCAAATCGGCGCCAAATTCTGGGAAGTAATTTGCGACGAGCACGGAATTGATCACACCGGAAAATACAACGGCGATTCCGAACTTCAACTTGAACGTATCAATGTCTATTACAATGAAGCCAGTGGTGGAAGGTACGTTCCACGCGCTGTTCTTATGGATCTTGAACCTGGTACTATGGATTCCGTTAGATCCGGTCCGTTTGGTCAGATCTTTCGTCCGGATAATTTTGTATTCGGTCAGTCTGGTGCTGGGAATAATTGGGCCAAAGGTCATTATACCGAAGGCGCTGAGCTTATTGATTCTGTTCTTGATGTTGTTCGTAAAGAAGCAGAGAATTGTGATTGCTTGCAAGCTTTCACTCCTAGTTTTACTCAGCTCAAAAGACCTTCTCATTATTATGCCAACTTTGCTTTACCAGAATCTTATCGCCAAGAATCTGTTATTCAGGAGACAAGAAAACCCAAGATGACAACCTCGACTTCTAAGGGAAAAGAAACCACCTTCTACAAACATGAATCCTCTTCAGATTCACAAGAAGCAACTGAACCACCTTCCATCAAGACAAAGAAGACAGATCTGCCAATCTAG

Protein sequence

>Msa0312080

MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYNGDSELQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQAFTPSFTQLKRPSHYYANFALPESYRQESVIQETRKPKMTTSTSKGKETTFYKHESSSDSQEATEPPSIKTKKTDLPI*