Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0312950 | XP_003593582.1 | 94.637 | 317 | 16 | 1 | 1 | 316 | 1 | 317 | 0.0 | 620 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0312890 | Msa0312950 | 0.992390 | 5.273572e-193 | -8.615850e-47 |
| Msa0312950 | Msa0312970 | 0.999340 | 2.584349e-304 | -8.615850e-47 |
| Msa0312950 | Msa0716150 | 0.807829 | 4.173997e-50 | -8.615850e-47 |
| Msa0312950 | Msa1158620 | 0.812340 | 4.454332e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0312950 | MtrunA17_Chr2g0282301 | 94.637 | 317 | 16 | 1 | 1 | 316 | 1 | 317 | 0.0 | 620 |
| Msa0312950 | MtrunA17_Chr2g0282311 | 72.956 | 318 | 82 | 4 | 1 | 316 | 4 | 319 | 2.90e-166 | 465 |
| Msa0312950 | MtrunA17_Chr4g0047231 | 56.442 | 326 | 130 | 6 | 1 | 316 | 1 | 324 | 8.68e-127 | 365 |
| Msa0312950 | MtrunA17_Chr4g0047221 | 56.615 | 325 | 129 | 8 | 1 | 316 | 55 | 376 | 8.56e-123 | 357 |
| Msa0312950 | MtrunA17_Chr4g0040171 | 55.602 | 241 | 96 | 6 | 78 | 316 | 59 | 290 | 4.20e-88 | 265 |
| Msa0312950 | MtrunA17_Chr5g0396281 | 35.398 | 226 | 140 | 3 | 60 | 283 | 19 | 240 | 6.23e-46 | 155 |
| Msa0312950 | MtrunA17_Chr4g0075611 | 36.628 | 172 | 88 | 2 | 103 | 274 | 112 | 262 | 5.78e-34 | 126 |
| Msa0312950 | MtrunA17_Chr4g0075591 | 41.985 | 131 | 70 | 1 | 144 | 274 | 120 | 244 | 1.37e-33 | 124 |
| Msa0312950 | MtrunA17_Chr7g0251511 | 34.459 | 148 | 96 | 1 | 128 | 275 | 117 | 263 | 6.98e-33 | 124 |
| Msa0312950 | MtrunA17_Chr8g0339051 | 37.500 | 144 | 86 | 2 | 144 | 283 | 133 | 276 | 1.06e-32 | 122 |
| Msa0312950 | MtrunA17_Chr1g0166241 | 40.769 | 130 | 71 | 2 | 139 | 268 | 150 | 273 | 1.60e-32 | 123 |
| Msa0312950 | MtrunA17_Chr1g0188091 | 39.716 | 141 | 79 | 2 | 139 | 279 | 172 | 306 | 1.04e-30 | 119 |
| Msa0312950 | MtrunA17_Chr2g0289701 | 36.842 | 133 | 78 | 2 | 144 | 276 | 136 | 262 | 3.21e-29 | 114 |
| Msa0312950 | MtrunA17_Chr8g0384101 | 37.302 | 126 | 78 | 1 | 142 | 266 | 82 | 207 | 7.95e-29 | 111 |
| Msa0312950 | MtrunA17_Chr1g0184881 | 33.333 | 174 | 107 | 3 | 146 | 316 | 172 | 339 | 3.65e-28 | 111 |
| Msa0312950 | MtrunA17_Chr7g0260551 | 39.167 | 120 | 67 | 1 | 154 | 273 | 172 | 285 | 6.49e-28 | 111 |
| Msa0312950 | MtrunA17_Chr7g0234691 | 36.434 | 129 | 80 | 2 | 144 | 271 | 173 | 300 | 8.24e-26 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0312950 | AT4G32480.1 | 53.165 | 237 | 105 | 4 | 67 | 302 | 43 | 274 | 1.62e-85 | 259 |
| Msa0312950 | AT2G20670.1 | 50.000 | 226 | 101 | 4 | 83 | 302 | 61 | 280 | 6.02e-77 | 237 |
| Msa0312950 | AT3G07350.1 | 37.086 | 151 | 95 | 0 | 132 | 282 | 125 | 275 | 1.30e-39 | 141 |
| Msa0312950 | AT4G14620.1 | 36.872 | 179 | 105 | 3 | 139 | 315 | 140 | 312 | 1.75e-35 | 131 |
| Msa0312950 | AT2G38820.2 | 38.298 | 141 | 75 | 3 | 137 | 271 | 148 | 282 | 1.78e-31 | 120 |
| Msa0312950 | AT3G25240.1 | 35.971 | 139 | 88 | 1 | 139 | 276 | 112 | 250 | 6.27e-31 | 118 |
| Msa0312950 | AT3G22970.2 | 39.259 | 135 | 76 | 1 | 139 | 273 | 54 | 182 | 9.15e-31 | 117 |
| Msa0312950 | AT3G22970.1 | 39.850 | 133 | 74 | 1 | 139 | 271 | 165 | 291 | 1.74e-29 | 115 |
| Msa0312950 | AT2G39650.2 | 30.657 | 137 | 94 | 1 | 137 | 272 | 42 | 178 | 9.15e-28 | 108 |
| Msa0312950 | AT2G39650.1 | 30.657 | 137 | 94 | 1 | 137 | 272 | 104 | 240 | 1.73e-27 | 108 |
| Msa0312950 | AT3G54550.1 | 35.036 | 137 | 79 | 2 | 143 | 275 | 145 | 275 | 4.24e-26 | 105 |
| Msa0312950 | AT1G62420.1 | 33.333 | 153 | 89 | 3 | 131 | 280 | 101 | 243 | 4.10e-25 | 102 |
| Msa0312950 | AT1G12030.1 | 33.333 | 132 | 81 | 2 | 144 | 274 | 112 | 237 | 4.04e-23 | 97.4 |
| Msa0312950 | AT1G77145.1 | 31.757 | 148 | 89 | 2 | 139 | 274 | 72 | 219 | 2.84e-21 | 91.7 |
| Msa0312950 | AT1G77160.2 | 32.117 | 137 | 81 | 2 | 142 | 266 | 25 | 161 | 3.78e-21 | 90.1 |
| Msa0312950 | AT1G77160.1 | 32.143 | 140 | 83 | 2 | 139 | 266 | 77 | 216 | 4.86e-21 | 90.9 |
| Msa0312950 | AT1G77145.2 | 35.514 | 107 | 65 | 1 | 172 | 274 | 56 | 162 | 3.11e-16 | 76.3 |
Find 75 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGTTGACTATTGATTTAT+TGG | 0.144388 | 2_4:+8197714 | Msa0312950:CDS |
| AACATGGATGCCTTTGATTT+TGG | 0.176314 | 2_4:-8197697 | None:intergenic |
| ATCCTTACTTCCCCTTTCTT+TGG | 0.194440 | 2_4:-8197385 | None:intergenic |
| TATTTCTTGAATAGCTTCTT+TGG | 0.203225 | 2_4:-8196471 | None:intergenic |
| CAGGAACCTAGTAGACTTTC+TGG | 0.231900 | 2_4:-8195829 | None:intergenic |
| ATTTATCTCTATACAAATAT+TGG | 0.278613 | 2_4:-8197932 | None:intergenic |
| TCATTCACTTGAAATGGATT+TGG | 0.300841 | 2_4:+8195986 | Msa0312950:CDS |
| TTGAGAAGAACCGAAGCTTT+TGG | 0.320088 | 2_4:+8196045 | Msa0312950:CDS |
| TGAACTTGTTCTATATATAT+TGG | 0.329591 | 2_4:-8196423 | None:intergenic |
| TCTACGAGGCTTCAGAAATC+TGG | 0.333574 | 2_4:+8196578 | Msa0312950:CDS |
| GTGCTATCTGCAAAACAAAA+TGG | 0.339768 | 2_4:+8196609 | Msa0312950:CDS |
| TCTATGTCATTCACTTGAAA+TGG | 0.356046 | 2_4:+8195980 | Msa0312950:CDS |
| ATTGCATTGCACAGCTGTTA+AGG | 0.385921 | 2_4:+8197750 | Msa0312950:CDS |
| GTTGAAGTGTTCCTTTCAAA+TGG | 0.386132 | 2_4:-8197631 | None:intergenic |
| ATAGGTACATGCAAGCTAAA+TGG | 0.395692 | 2_4:+8197602 | Msa0312950:CDS |
| AAGGTTGTGTGATTGTAAAA+AGG | 0.406027 | 2_4:+8197769 | Msa0312950:exon |
| AGCTGCCCGAGGTGTTTGTT+GGG | 0.406249 | 2_4:+8197482 | Msa0312950:CDS |
| TGTTGGGAAAGTAGAGAGAT+TGG | 0.411917 | 2_4:+8197498 | Msa0312950:CDS |
| ATCCAAAGAAAGGGGAAGTA+AGG | 0.437384 | 2_4:+8197383 | Msa0312950:CDS |
| GACAATACAAATCCAAAGAA+AGG | 0.438456 | 2_4:+8197373 | Msa0312950:CDS |
| CTTTGAGAAAACAAGAATCA+TGG | 0.448459 | 2_4:+8195791 | Msa0312950:exon |
| CCTTGGCCAGAAAGTCTACT+AGG | 0.449081 | 2_4:+8195823 | Msa0312950:CDS |
| GTTCCTGACGATTAATCGTC+AGG | 0.459884 | 2_4:+8195845 | Msa0312950:CDS |
| AAAGCTTCGGTTCTTCTCAA+TGG | 0.462467 | 2_4:-8196042 | None:intergenic |
| GTTGGCTTTCCCAAAAGCTT+CGG | 0.463303 | 2_4:-8196055 | None:intergenic |
| ACAATACAAATCCAAAGAAA+GGG | 0.465593 | 2_4:+8197374 | Msa0312950:CDS |
| GCGATTTACATACAAGTATG+TGG | 0.471891 | 2_4:-8197910 | None:intergenic |
| AAGCTGCCCGAGGTGTTTGT+TGG | 0.472850 | 2_4:+8197481 | Msa0312950:CDS |
| GGATGATGATGAAGAGGAAA+GGG | 0.474372 | 2_4:+8196007 | Msa0312950:CDS |
| GTTGGGAAAGTAGAGAGATT+GGG | 0.477670 | 2_4:+8197499 | Msa0312950:CDS |
| AATCATGGGTGTTACCTCCT+TGG | 0.479101 | 2_4:+8195806 | Msa0312950:exon |
| TTCTTGAATAGCTTCTTTGG+TGG | 0.492308 | 2_4:-8196468 | None:intergenic |
| AAGCCAACATCTTGGTGTGC+AGG | 0.494557 | 2_4:+8196070 | Msa0312950:CDS |
| TATCCTGACGATTAATCGTC+AGG | 0.500747 | 2_4:-8195848 | None:intergenic |
| TTCAACAACTCCTCTTCCAA+TGG | 0.503995 | 2_4:+8197648 | Msa0312950:CDS |
| TACATGCAAGCTAAATGGTT+GGG | 0.506802 | 2_4:+8197607 | Msa0312950:CDS |
| CAATAAATCAATAGTCAACA+TGG | 0.512237 | 2_4:-8197713 | None:intergenic |
| TTGCCATCTCAAACTCAGCT+TGG | 0.517950 | 2_4:-8197426 | None:intergenic |
| AATGGTTGGGTCCATTTGAA+AGG | 0.521633 | 2_4:+8197620 | Msa0312950:CDS |
| AAGCTGAGTTTGAGATGGCA+AGG | 0.523389 | 2_4:+8197428 | Msa0312950:CDS |
| TGGATGATGATGAAGAGGAA+AGG | 0.523495 | 2_4:+8196006 | Msa0312950:CDS |
| CGATTTACATACAAGTATGT+GGG | 0.525714 | 2_4:-8197909 | None:intergenic |
| TCAACAACTCCTCTTCCAAT+GGG | 0.527252 | 2_4:+8197649 | Msa0312950:CDS |
| TTTGAGAAAACAAGAATCAT+GGG | 0.534040 | 2_4:+8195792 | Msa0312950:exon |
| ACTTCATCAGATATTCCATC+AGG | 0.535880 | 2_4:+8196635 | Msa0312950:CDS |
| ACTGACGAAGTGATCATGTC+GGG | 0.551370 | 2_4:+8195936 | Msa0312950:CDS |
| TCAGAAATTCCCATTGGAAG+AGG | 0.553074 | 2_4:-8197658 | None:intergenic |
| TGGCTGCAACAGAAAGATGA+TGG | 0.553863 | 2_4:+8196514 | Msa0312950:CDS |
| ATGTACCTATGCTTCCTCCA+TGG | 0.558080 | 2_4:-8197589 | None:intergenic |
| TTTCCAAGCTGAGTTTGAGA+TGG | 0.565289 | 2_4:+8197423 | Msa0312950:CDS |
| GTTCATTAGAGACAAAGATA+AGG | 0.565658 | 2_4:+8196441 | Msa0312950:CDS |
| AATAACAAAGCCAAAATCAA+AGG | 0.568849 | 2_4:+8197687 | Msa0312950:CDS |
| ACTTTCCCAACAAACACCTC+GGG | 0.573313 | 2_4:-8197487 | None:intergenic |
| GTACATGCAAGCTAAATGGT+TGG | 0.573929 | 2_4:+8197606 | Msa0312950:CDS |
| ATCCTCTCAGAAATTCCCAT+TGG | 0.574010 | 2_4:-8197664 | None:intergenic |
| TACTTTCCCAACAAACACCT+CGG | 0.575693 | 2_4:-8197488 | None:intergenic |
| ACAGCTGTGCAATGCAATGT+TGG | 0.576393 | 2_4:-8197745 | None:intergenic |
| TGGGGCCATGGAGGAAGCAT+AGG | 0.577510 | 2_4:+8197584 | Msa0312950:CDS |
| AGCTGAGTTTGAGATGGCAA+GGG | 0.587593 | 2_4:+8197429 | Msa0312950:CDS |
| CCTAGTAGACTTTCTGGCCA+AGG | 0.588067 | 2_4:-8195823 | None:intergenic |
| CAGGATAGTCTCGAGTCTGA+AGG | 0.595130 | 2_4:+8195864 | Msa0312950:CDS |
| TCACCTGCACACCAAGATGT+TGG | 0.598265 | 2_4:-8196073 | None:intergenic |
| CAATCTTCAGACACGAGTGT+TGG | 0.608841 | 2_4:+8195888 | Msa0312950:CDS |
| GGATTTGGATGATGATGAAG+AGG | 0.619315 | 2_4:+8196001 | Msa0312950:CDS |
| TACTGACGAAGTGATCATGT+CGG | 0.631088 | 2_4:+8195935 | Msa0312950:CDS |
| GGCTGCAACAGAAAGATGAT+GGG | 0.637175 | 2_4:+8196515 | Msa0312950:CDS |
| CAATACAAATCCAAAGAAAG+GGG | 0.639538 | 2_4:+8197375 | Msa0312950:CDS |
| AAATGCACATGGGGCCATGG+AGG | 0.645712 | 2_4:+8197575 | Msa0312950:CDS |
| GCTGAGTTTGAGATGGCAAG+GGG | 0.658083 | 2_4:+8197430 | Msa0312950:CDS |
| TTCCAATGGGAATTTCTGAG+AGG | 0.662878 | 2_4:+8197662 | Msa0312950:CDS |
| AGTAGACTTTCTGGCCAAGG+AGG | 0.681329 | 2_4:-8195820 | None:intergenic |
| ACTCGTGCAGAAGCTGCCCG+AGG | 0.684249 | 2_4:+8197471 | Msa0312950:CDS |
| GATTTACATACAAGTATGTG+GGG | 0.685935 | 2_4:-8197908 | None:intergenic |
| AAAAGCTGTGGAGCAGTGTG+TGG | 0.710871 | 2_4:+8196494 | Msa0312950:CDS |
| TGATGAGGGAAGTTTCTACG+AGG | 0.752965 | 2_4:+8196564 | Msa0312950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCAAATACATATTAATTT+TGG | - | chr2_4:8196198-8196217 | None:intergenic | 10.0% |
| !! | TTAAATCATATTTATTAAGA+AGG | - | chr2_4:8196325-8196344 | None:intergenic | 10.0% |
| !!! | TTTTTATTTTATTTTTAGGT+GGG | - | chr2_4:8196839-8196858 | None:intergenic | 10.0% |
| !!! | TTTTTTATTTTATTTTTAGG+TGG | - | chr2_4:8196840-8196859 | None:intergenic | 10.0% |
| !!! | CACTTTTTTATTTTATTTTT+AGG | - | chr2_4:8196843-8196862 | None:intergenic | 10.0% |
| !! | CTAAAAATAAAATAAAAAAG+TGG | + | chr2_4:8196841-8196860 | Msa0312950:intron | 10.0% |
| !!! | AATATAATTGATGATATTTT+AGG | - | chr2_4:8196968-8196987 | None:intergenic | 10.0% |
| !!! | AATTTAATTAGTTTTTTTAC+TGG | + | chr2_4:8197798-8197817 | Msa0312950:three_prime_UTR | 10.0% |
| !!! | AATCAAATACATATTAATTT+TGG | - | chr2_4:8196198-8196217 | None:intergenic | 10.0% |
| !! | TTAAATCATATTTATTAAGA+AGG | - | chr2_4:8196325-8196344 | None:intergenic | 10.0% |
| !!! | TTTTTATTTTATTTTTAGGT+GGG | - | chr2_4:8196839-8196858 | None:intergenic | 10.0% |
| !!! | TTTTTTATTTTATTTTTAGG+TGG | - | chr2_4:8196840-8196859 | None:intergenic | 10.0% |
| !!! | CACTTTTTTATTTTATTTTT+AGG | - | chr2_4:8196843-8196862 | None:intergenic | 10.0% |
| !! | CTAAAAATAAAATAAAAAAG+TGG | + | chr2_4:8196841-8196860 | Msa0312950:intron | 10.0% |
| !!! | AATATAATTGATGATATTTT+AGG | - | chr2_4:8196968-8196987 | None:intergenic | 10.0% |
| !!! | AATTTAATTAGTTTTTTTAC+TGG | + | chr2_4:8197798-8197817 | Msa0312950:three_prime_UTR | 10.0% |
| !!! | ATATGTATTTGATTTTTTGT+TGG | + | chr2_4:8196204-8196223 | Msa0312950:intron | 15.0% |
| !! | GGATTAAAAAATTAAAAAGT+AGG | + | chr2_4:8196888-8196907 | Msa0312950:intron | 15.0% |
| !! | ATTTATCTCTATACAAATAT+TGG | - | chr2_4:8197935-8197954 | None:intergenic | 15.0% |
| !!! | ATATGTATTTGATTTTTTGT+TGG | + | chr2_4:8196204-8196223 | Msa0312950:intron | 15.0% |
| !! | GGATTAAAAAATTAAAAAGT+AGG | + | chr2_4:8196888-8196907 | Msa0312950:intron | 15.0% |
| !! | ATTTATCTCTATACAAATAT+TGG | - | chr2_4:8197935-8197954 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTGATCAATCAAT+GGG | + | chr2_4:8196382-8196401 | Msa0312950:intron | 20.0% |
| !!! | TGAACTTGTTCTATATATAT+TGG | - | chr2_4:8196426-8196445 | None:intergenic | 20.0% |
| !!! | TTTTATGAAAAGCAATATTG+TGG | + | chr2_4:8196754-8196773 | Msa0312950:intron | 20.0% |
| !! | GCACATTAACTAATATATAA+AGG | - | chr2_4:8197255-8197274 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTGATCAATCAAT+GGG | + | chr2_4:8196382-8196401 | Msa0312950:intron | 20.0% |
| !!! | TGAACTTGTTCTATATATAT+TGG | - | chr2_4:8196426-8196445 | None:intergenic | 20.0% |
| !!! | TTTTATGAAAAGCAATATTG+TGG | + | chr2_4:8196754-8196773 | Msa0312950:intron | 20.0% |
| !! | GCACATTAACTAATATATAA+AGG | - | chr2_4:8197255-8197274 | None:intergenic | 20.0% |
| ! | TTTGAGAAAACAAGAATCAT+GGG | + | chr2_4:8195792-8195811 | Msa0312950:exon | 25.0% |
| !! | TTAGTGTGATTTTATGTTGA+GGG | + | chr2_4:8196129-8196148 | Msa0312950:intron | 25.0% |
| ! | CTATAATTATCAGCTAAGTA+CGG | + | chr2_4:8196263-8196282 | Msa0312950:intron | 25.0% |
| !!! | GTTCTAAAAGCATTAGATTT+TGG | + | chr2_4:8196355-8196374 | Msa0312950:intron | 25.0% |
| !!! | CTTTTGTTTTGATCAATCAA+TGG | + | chr2_4:8196381-8196400 | Msa0312950:intron | 25.0% |
| !!! | CAATCAATGGGATTTAATTT+TGG | + | chr2_4:8196394-8196413 | Msa0312950:intron | 25.0% |
| ! | TATTTCTTGAATAGCTTCTT+TGG | - | chr2_4:8196474-8196493 | None:intergenic | 25.0% |
| ! | ATTCAAGAAATAAAAAGCTG+TGG | + | chr2_4:8196482-8196501 | Msa0312950:CDS | 25.0% |
| ! | GGAAAGAAAGAAAATTGAAA+AGG | + | chr2_4:8196930-8196949 | Msa0312950:intron | 25.0% |
| ! | TCATGAATTTAAGTCTACTT+TGG | - | chr2_4:8197181-8197200 | None:intergenic | 25.0% |
| !! | CACACTATTCTTTTATAGAT+TGG | - | chr2_4:8197211-8197230 | None:intergenic | 25.0% |
| ! | GTGATATATGCTATTAGATT+AGG | - | chr2_4:8197313-8197332 | None:intergenic | 25.0% |
| ! | TATATCACAATTAACTATGC+AGG | + | chr2_4:8197325-8197344 | Msa0312950:intron | 25.0% |
| ! | ATATCACAATTAACTATGCA+GGG | + | chr2_4:8197326-8197345 | Msa0312950:intron | 25.0% |
| ! | ACAATACAAATCCAAAGAAA+GGG | + | chr2_4:8197374-8197393 | Msa0312950:CDS | 25.0% |
| !!! | CACTGCATAATATTTTGATT+AGG | - | chr2_4:8197528-8197547 | None:intergenic | 25.0% |
| !!! | TTTATCCTTCATGCATTTTT+TGG | - | chr2_4:8197554-8197573 | None:intergenic | 25.0% |
| ! | AAGGATAAAAAAATGCACAT+GGG | + | chr2_4:8197565-8197584 | Msa0312950:CDS | 25.0% |
| ! | AATAACAAAGCCAAAATCAA+AGG | + | chr2_4:8197687-8197706 | Msa0312950:CDS | 25.0% |
| ! | CAATAAATCAATAGTCAACA+TGG | - | chr2_4:8197716-8197735 | None:intergenic | 25.0% |
| !!! | CATGTTGACTATTGATTTAT+TGG | + | chr2_4:8197714-8197733 | Msa0312950:CDS | 25.0% |
| !!! | GTCATTTTGCATTTTTGTTA+TGG | + | chr2_4:8197820-8197839 | Msa0312950:three_prime_UTR | 25.0% |
| !! | TAATTTTCACCAAAGAAAAG+AGG | - | chr2_4:8197861-8197880 | None:intergenic | 25.0% |
| !! | CTTTTCTTTGGTGAAAATTA+AGG | + | chr2_4:8197861-8197880 | Msa0312950:three_prime_UTR | 25.0% |
| ! | TTTGAGAAAACAAGAATCAT+GGG | + | chr2_4:8195792-8195811 | Msa0312950:exon | 25.0% |
| !! | TTAGTGTGATTTTATGTTGA+GGG | + | chr2_4:8196129-8196148 | Msa0312950:intron | 25.0% |
| ! | CTATAATTATCAGCTAAGTA+CGG | + | chr2_4:8196263-8196282 | Msa0312950:intron | 25.0% |
| !!! | GTTCTAAAAGCATTAGATTT+TGG | + | chr2_4:8196355-8196374 | Msa0312950:intron | 25.0% |
| !!! | CTTTTGTTTTGATCAATCAA+TGG | + | chr2_4:8196381-8196400 | Msa0312950:intron | 25.0% |
| !!! | CAATCAATGGGATTTAATTT+TGG | + | chr2_4:8196394-8196413 | Msa0312950:intron | 25.0% |
| ! | TATTTCTTGAATAGCTTCTT+TGG | - | chr2_4:8196474-8196493 | None:intergenic | 25.0% |
| ! | ATTCAAGAAATAAAAAGCTG+TGG | + | chr2_4:8196482-8196501 | Msa0312950:CDS | 25.0% |
| ! | GGAAAGAAAGAAAATTGAAA+AGG | + | chr2_4:8196930-8196949 | Msa0312950:intron | 25.0% |
| ! | TCATGAATTTAAGTCTACTT+TGG | - | chr2_4:8197181-8197200 | None:intergenic | 25.0% |
| !! | CACACTATTCTTTTATAGAT+TGG | - | chr2_4:8197211-8197230 | None:intergenic | 25.0% |
| ! | GTGATATATGCTATTAGATT+AGG | - | chr2_4:8197313-8197332 | None:intergenic | 25.0% |
| ! | TATATCACAATTAACTATGC+AGG | + | chr2_4:8197325-8197344 | Msa0312950:intron | 25.0% |
| ! | ATATCACAATTAACTATGCA+GGG | + | chr2_4:8197326-8197345 | Msa0312950:intron | 25.0% |
| ! | ACAATACAAATCCAAAGAAA+GGG | + | chr2_4:8197374-8197393 | Msa0312950:CDS | 25.0% |
| !!! | CACTGCATAATATTTTGATT+AGG | - | chr2_4:8197528-8197547 | None:intergenic | 25.0% |
| !!! | TTTATCCTTCATGCATTTTT+TGG | - | chr2_4:8197554-8197573 | None:intergenic | 25.0% |
| ! | AAGGATAAAAAAATGCACAT+GGG | + | chr2_4:8197565-8197584 | Msa0312950:CDS | 25.0% |
| ! | AATAACAAAGCCAAAATCAA+AGG | + | chr2_4:8197687-8197706 | Msa0312950:CDS | 25.0% |
| ! | CAATAAATCAATAGTCAACA+TGG | - | chr2_4:8197716-8197735 | None:intergenic | 25.0% |
| !!! | CATGTTGACTATTGATTTAT+TGG | + | chr2_4:8197714-8197733 | Msa0312950:CDS | 25.0% |
| !!! | GTCATTTTGCATTTTTGTTA+TGG | + | chr2_4:8197820-8197839 | Msa0312950:three_prime_UTR | 25.0% |
| !! | TAATTTTCACCAAAGAAAAG+AGG | - | chr2_4:8197861-8197880 | None:intergenic | 25.0% |
| !! | CTTTTCTTTGGTGAAAATTA+AGG | + | chr2_4:8197861-8197880 | Msa0312950:three_prime_UTR | 25.0% |
| ! | CTTTGAGAAAACAAGAATCA+TGG | + | chr2_4:8195791-8195810 | Msa0312950:exon | 30.0% |
| TCTATGTCATTCACTTGAAA+TGG | + | chr2_4:8195980-8195999 | Msa0312950:CDS | 30.0% | |
| ! | TCATTCACTTGAAATGGATT+TGG | + | chr2_4:8195986-8196005 | Msa0312950:CDS | 30.0% |
| ! | GTTAGTGTGATTTTATGTTG+AGG | + | chr2_4:8196128-8196147 | Msa0312950:intron | 30.0% |
| !!! | CTAAAAGCATTAGATTTTGG+AGG | + | chr2_4:8196358-8196377 | Msa0312950:intron | 30.0% |
| GTTCATTAGAGACAAAGATA+AGG | + | chr2_4:8196441-8196460 | Msa0312950:CDS | 30.0% | |
| AATGAATAACATGTACCTGA+TGG | - | chr2_4:8196653-8196672 | None:intergenic | 30.0% | |
| TATGAAAAGCAATATTGTGG+TGG | + | chr2_4:8196757-8196776 | Msa0312950:intron | 30.0% | |
| ATGAAAAGCAATATTGTGGT+GGG | + | chr2_4:8196758-8196777 | Msa0312950:intron | 30.0% | |
| !!! | TATTTTTAGGTGGGTGAAAA+GGG | - | chr2_4:8196830-8196849 | None:intergenic | 30.0% |
| !!! | TTATTTTTAGGTGGGTGAAA+AGG | - | chr2_4:8196831-8196850 | None:intergenic | 30.0% |
| GGAAATGAATAGATTCTTCA+TGG | + | chr2_4:8196909-8196928 | Msa0312950:intron | 30.0% | |
| ACGTTAAAAGTTTCAGATTG+AGG | - | chr2_4:8197002-8197021 | None:intergenic | 30.0% | |
| GAATTTAAGTCTACTTTGGT+TGG | - | chr2_4:8197177-8197196 | None:intergenic | 30.0% | |
| TATCACAATTAACTATGCAG+GGG | + | chr2_4:8197327-8197346 | Msa0312950:intron | 30.0% | |
| GACAATACAAATCCAAAGAA+AGG | + | chr2_4:8197373-8197392 | Msa0312950:CDS | 30.0% | |
| CAATACAAATCCAAAGAAAG+GGG | + | chr2_4:8197375-8197394 | Msa0312950:CDS | 30.0% | |
| GAAGGATAAAAAAATGCACA+TGG | + | chr2_4:8197564-8197583 | Msa0312950:CDS | 30.0% | |
| AGGATAAAAAAATGCACATG+GGG | + | chr2_4:8197566-8197585 | Msa0312950:CDS | 30.0% | |
| AAGGTTGTGTGATTGTAAAA+AGG | + | chr2_4:8197769-8197788 | Msa0312950:exon | 30.0% | |
| ! | TCTTTTGTTCCTCTTTTCTT+TGG | + | chr2_4:8197849-8197868 | Msa0312950:three_prime_UTR | 30.0% |
| GATTTACATACAAGTATGTG+GGG | - | chr2_4:8197911-8197930 | None:intergenic | 30.0% | |
| CGATTTACATACAAGTATGT+GGG | - | chr2_4:8197912-8197931 | None:intergenic | 30.0% | |
| ! | CTTTGAGAAAACAAGAATCA+TGG | + | chr2_4:8195791-8195810 | Msa0312950:exon | 30.0% |
| TCTATGTCATTCACTTGAAA+TGG | + | chr2_4:8195980-8195999 | Msa0312950:CDS | 30.0% | |
| ! | TCATTCACTTGAAATGGATT+TGG | + | chr2_4:8195986-8196005 | Msa0312950:CDS | 30.0% |
| ! | GTTAGTGTGATTTTATGTTG+AGG | + | chr2_4:8196128-8196147 | Msa0312950:intron | 30.0% |
| !!! | CTAAAAGCATTAGATTTTGG+AGG | + | chr2_4:8196358-8196377 | Msa0312950:intron | 30.0% |
| GTTCATTAGAGACAAAGATA+AGG | + | chr2_4:8196441-8196460 | Msa0312950:CDS | 30.0% | |
| AATGAATAACATGTACCTGA+TGG | - | chr2_4:8196653-8196672 | None:intergenic | 30.0% | |
| TATGAAAAGCAATATTGTGG+TGG | + | chr2_4:8196757-8196776 | Msa0312950:intron | 30.0% | |
| ATGAAAAGCAATATTGTGGT+GGG | + | chr2_4:8196758-8196777 | Msa0312950:intron | 30.0% | |
| !!! | TATTTTTAGGTGGGTGAAAA+GGG | - | chr2_4:8196830-8196849 | None:intergenic | 30.0% |
| !!! | TTATTTTTAGGTGGGTGAAA+AGG | - | chr2_4:8196831-8196850 | None:intergenic | 30.0% |
| GGAAATGAATAGATTCTTCA+TGG | + | chr2_4:8196909-8196928 | Msa0312950:intron | 30.0% | |
| ACGTTAAAAGTTTCAGATTG+AGG | - | chr2_4:8197002-8197021 | None:intergenic | 30.0% | |
| GAATTTAAGTCTACTTTGGT+TGG | - | chr2_4:8197177-8197196 | None:intergenic | 30.0% | |
| TATCACAATTAACTATGCAG+GGG | + | chr2_4:8197327-8197346 | Msa0312950:intron | 30.0% | |
| GACAATACAAATCCAAAGAA+AGG | + | chr2_4:8197373-8197392 | Msa0312950:CDS | 30.0% | |
| CAATACAAATCCAAAGAAAG+GGG | + | chr2_4:8197375-8197394 | Msa0312950:CDS | 30.0% | |
| GAAGGATAAAAAAATGCACA+TGG | + | chr2_4:8197564-8197583 | Msa0312950:CDS | 30.0% | |
| AGGATAAAAAAATGCACATG+GGG | + | chr2_4:8197566-8197585 | Msa0312950:CDS | 30.0% | |
| AAGGTTGTGTGATTGTAAAA+AGG | + | chr2_4:8197769-8197788 | Msa0312950:exon | 30.0% | |
| ! | TCTTTTGTTCCTCTTTTCTT+TGG | + | chr2_4:8197849-8197868 | Msa0312950:three_prime_UTR | 30.0% |
| GATTTACATACAAGTATGTG+GGG | - | chr2_4:8197911-8197930 | None:intergenic | 30.0% | |
| CGATTTACATACAAGTATGT+GGG | - | chr2_4:8197912-8197931 | None:intergenic | 30.0% | |
| TTCTTGAATAGCTTCTTTGG+TGG | - | chr2_4:8196471-8196490 | None:intergenic | 35.0% | |
| GTGCTATCTGCAAAACAAAA+TGG | + | chr2_4:8196609-8196628 | Msa0312950:CDS | 35.0% | |
| ACTTCATCAGATATTCCATC+AGG | + | chr2_4:8196635-8196654 | Msa0312950:CDS | 35.0% | |
| ! | AAGTCTACTTTGGTTGGTAT+TGG | - | chr2_4:8197171-8197190 | None:intergenic | 35.0% |
| ATAGGTACATGCAAGCTAAA+TGG | + | chr2_4:8197602-8197621 | Msa0312950:CDS | 35.0% | |
| TACATGCAAGCTAAATGGTT+GGG | + | chr2_4:8197607-8197626 | Msa0312950:CDS | 35.0% | |
| ! | GTTGAAGTGTTCCTTTCAAA+TGG | - | chr2_4:8197634-8197653 | None:intergenic | 35.0% |
| !! | AACATGGATGCCTTTGATTT+TGG | - | chr2_4:8197700-8197719 | None:intergenic | 35.0% |
| GCGATTTACATACAAGTATG+TGG | - | chr2_4:8197913-8197932 | None:intergenic | 35.0% | |
| TTCTTGAATAGCTTCTTTGG+TGG | - | chr2_4:8196471-8196490 | None:intergenic | 35.0% | |
| GTGCTATCTGCAAAACAAAA+TGG | + | chr2_4:8196609-8196628 | Msa0312950:CDS | 35.0% | |
| ACTTCATCAGATATTCCATC+AGG | + | chr2_4:8196635-8196654 | Msa0312950:CDS | 35.0% | |
| ! | AAGTCTACTTTGGTTGGTAT+TGG | - | chr2_4:8197171-8197190 | None:intergenic | 35.0% |
| ATAGGTACATGCAAGCTAAA+TGG | + | chr2_4:8197602-8197621 | Msa0312950:CDS | 35.0% | |
| TACATGCAAGCTAAATGGTT+GGG | + | chr2_4:8197607-8197626 | Msa0312950:CDS | 35.0% | |
| ! | GTTGAAGTGTTCCTTTCAAA+TGG | - | chr2_4:8197634-8197653 | None:intergenic | 35.0% |
| !! | AACATGGATGCCTTTGATTT+TGG | - | chr2_4:8197700-8197719 | None:intergenic | 35.0% |
| GCGATTTACATACAAGTATG+TGG | - | chr2_4:8197913-8197932 | None:intergenic | 35.0% | |
| TATCCTGACGATTAATCGTC+AGG | - | chr2_4:8195851-8195870 | None:intergenic | 40.0% | |
| TACTGACGAAGTGATCATGT+CGG | + | chr2_4:8195935-8195954 | Msa0312950:CDS | 40.0% | |
| ! | GGATTTGGATGATGATGAAG+AGG | + | chr2_4:8196001-8196020 | Msa0312950:CDS | 40.0% |
| ! | TGGATGATGATGAAGAGGAA+AGG | + | chr2_4:8196006-8196025 | Msa0312950:CDS | 40.0% |
| ! | GGATGATGATGAAGAGGAAA+GGG | + | chr2_4:8196007-8196026 | Msa0312950:CDS | 40.0% |
| AAAGCTTCGGTTCTTCTCAA+TGG | - | chr2_4:8196045-8196064 | None:intergenic | 40.0% | |
| ! | TTGAGAAGAACCGAAGCTTT+TGG | + | chr2_4:8196045-8196064 | Msa0312950:CDS | 40.0% |
| ! | TGAGAAGAACCGAAGCTTTT+GGG | + | chr2_4:8196046-8196065 | Msa0312950:CDS | 40.0% |
| !! | TTTTGGGAAAGCCAACATCT+TGG | + | chr2_4:8196062-8196081 | Msa0312950:CDS | 40.0% |
| CTGCAAAAACTGCTTGATGA+GGG | + | chr2_4:8196550-8196569 | Msa0312950:CDS | 40.0% | |
| !! | TGTGGTGGGTCTAATAAGAT+AGG | + | chr2_4:8196772-8196791 | Msa0312950:intron | 40.0% |
| AATGATGCTCTTGTGGTAAG+AGG | + | chr2_4:8196866-8196885 | Msa0312950:intron | 40.0% | |
| ATGATGCTCTTGTGGTAAGA+GGG | + | chr2_4:8196867-8196886 | Msa0312950:intron | 40.0% | |
| ACTTCACTCTATCGACATAG+AGG | + | chr2_4:8197133-8197152 | Msa0312950:intron | 40.0% | |
| CTTCACTCTATCGACATAGA+GGG | + | chr2_4:8197134-8197153 | Msa0312950:intron | 40.0% | |
| ATCCAAAGAAAGGGGAAGTA+AGG | + | chr2_4:8197383-8197402 | Msa0312950:CDS | 40.0% | |
| ATCCTTACTTCCCCTTTCTT+TGG | - | chr2_4:8197388-8197407 | None:intergenic | 40.0% | |
| TTTCCAAGCTGAGTTTGAGA+TGG | + | chr2_4:8197423-8197442 | Msa0312950:CDS | 40.0% | |
| TACTTTCCCAACAAACACCT+CGG | - | chr2_4:8197491-8197510 | None:intergenic | 40.0% | |
| TGTTGGGAAAGTAGAGAGAT+TGG | + | chr2_4:8197498-8197517 | Msa0312950:CDS | 40.0% | |
| GTTGGGAAAGTAGAGAGATT+GGG | + | chr2_4:8197499-8197518 | Msa0312950:CDS | 40.0% | |
| TGCAGCCAAAAAATGCATGA+AGG | + | chr2_4:8197546-8197565 | Msa0312950:CDS | 40.0% | |
| GTACATGCAAGCTAAATGGT+TGG | + | chr2_4:8197606-8197625 | Msa0312950:CDS | 40.0% | |
| AATGGTTGGGTCCATTTGAA+AGG | + | chr2_4:8197620-8197639 | Msa0312950:CDS | 40.0% | |
| TTCAACAACTCCTCTTCCAA+TGG | + | chr2_4:8197648-8197667 | Msa0312950:CDS | 40.0% | |
| TCAACAACTCCTCTTCCAAT+GGG | + | chr2_4:8197649-8197668 | Msa0312950:CDS | 40.0% | |
| TCAGAAATTCCCATTGGAAG+AGG | - | chr2_4:8197661-8197680 | None:intergenic | 40.0% | |
| TTCCAATGGGAATTTCTGAG+AGG | + | chr2_4:8197662-8197681 | Msa0312950:CDS | 40.0% | |
| ATCCTCTCAGAAATTCCCAT+TGG | - | chr2_4:8197667-8197686 | None:intergenic | 40.0% | |
| ATTGCATTGCACAGCTGTTA+AGG | + | chr2_4:8197750-8197769 | Msa0312950:CDS | 40.0% | |
| TATCCTGACGATTAATCGTC+AGG | - | chr2_4:8195851-8195870 | None:intergenic | 40.0% | |
| TACTGACGAAGTGATCATGT+CGG | + | chr2_4:8195935-8195954 | Msa0312950:CDS | 40.0% | |
| ! | GGATTTGGATGATGATGAAG+AGG | + | chr2_4:8196001-8196020 | Msa0312950:CDS | 40.0% |
| ! | TGGATGATGATGAAGAGGAA+AGG | + | chr2_4:8196006-8196025 | Msa0312950:CDS | 40.0% |
| ! | GGATGATGATGAAGAGGAAA+GGG | + | chr2_4:8196007-8196026 | Msa0312950:CDS | 40.0% |
| AAAGCTTCGGTTCTTCTCAA+TGG | - | chr2_4:8196045-8196064 | None:intergenic | 40.0% | |
| ! | TTGAGAAGAACCGAAGCTTT+TGG | + | chr2_4:8196045-8196064 | Msa0312950:CDS | 40.0% |
| ! | TGAGAAGAACCGAAGCTTTT+GGG | + | chr2_4:8196046-8196065 | Msa0312950:CDS | 40.0% |
| !! | TTTTGGGAAAGCCAACATCT+TGG | + | chr2_4:8196062-8196081 | Msa0312950:CDS | 40.0% |
| CTGCAAAAACTGCTTGATGA+GGG | + | chr2_4:8196550-8196569 | Msa0312950:CDS | 40.0% | |
| !! | TGTGGTGGGTCTAATAAGAT+AGG | + | chr2_4:8196772-8196791 | Msa0312950:intron | 40.0% |
| AATGATGCTCTTGTGGTAAG+AGG | + | chr2_4:8196866-8196885 | Msa0312950:intron | 40.0% | |
| ATGATGCTCTTGTGGTAAGA+GGG | + | chr2_4:8196867-8196886 | Msa0312950:intron | 40.0% | |
| ACTTCACTCTATCGACATAG+AGG | + | chr2_4:8197133-8197152 | Msa0312950:intron | 40.0% | |
| CTTCACTCTATCGACATAGA+GGG | + | chr2_4:8197134-8197153 | Msa0312950:intron | 40.0% | |
| ATCCAAAGAAAGGGGAAGTA+AGG | + | chr2_4:8197383-8197402 | Msa0312950:CDS | 40.0% | |
| ATCCTTACTTCCCCTTTCTT+TGG | - | chr2_4:8197388-8197407 | None:intergenic | 40.0% | |
| TTTCCAAGCTGAGTTTGAGA+TGG | + | chr2_4:8197423-8197442 | Msa0312950:CDS | 40.0% | |
| TACTTTCCCAACAAACACCT+CGG | - | chr2_4:8197491-8197510 | None:intergenic | 40.0% | |
| TGTTGGGAAAGTAGAGAGAT+TGG | + | chr2_4:8197498-8197517 | Msa0312950:CDS | 40.0% | |
| GTTGGGAAAGTAGAGAGATT+GGG | + | chr2_4:8197499-8197518 | Msa0312950:CDS | 40.0% | |
| TGCAGCCAAAAAATGCATGA+AGG | + | chr2_4:8197546-8197565 | Msa0312950:CDS | 40.0% | |
| GTACATGCAAGCTAAATGGT+TGG | + | chr2_4:8197606-8197625 | Msa0312950:CDS | 40.0% | |
| AATGGTTGGGTCCATTTGAA+AGG | + | chr2_4:8197620-8197639 | Msa0312950:CDS | 40.0% | |
| TTCAACAACTCCTCTTCCAA+TGG | + | chr2_4:8197648-8197667 | Msa0312950:CDS | 40.0% | |
| TCAACAACTCCTCTTCCAAT+GGG | + | chr2_4:8197649-8197668 | Msa0312950:CDS | 40.0% | |
| TCAGAAATTCCCATTGGAAG+AGG | - | chr2_4:8197661-8197680 | None:intergenic | 40.0% | |
| TTCCAATGGGAATTTCTGAG+AGG | + | chr2_4:8197662-8197681 | Msa0312950:CDS | 40.0% | |
| ATCCTCTCAGAAATTCCCAT+TGG | - | chr2_4:8197667-8197686 | None:intergenic | 40.0% | |
| ATTGCATTGCACAGCTGTTA+AGG | + | chr2_4:8197750-8197769 | Msa0312950:CDS | 40.0% | |
| ! | AATCATGGGTGTTACCTCCT+TGG | + | chr2_4:8195806-8195825 | Msa0312950:exon | 45.0% |
| CAGGAACCTAGTAGACTTTC+TGG | - | chr2_4:8195832-8195851 | None:intergenic | 45.0% | |
| GTTCCTGACGATTAATCGTC+AGG | + | chr2_4:8195845-8195864 | Msa0312950:CDS | 45.0% | |
| CAATCTTCAGACACGAGTGT+TGG | + | chr2_4:8195888-8195907 | Msa0312950:CDS | 45.0% | |
| ACTGACGAAGTGATCATGTC+GGG | + | chr2_4:8195936-8195955 | Msa0312950:CDS | 45.0% | |
| !! | GTTGGCTTTCCCAAAAGCTT+CGG | - | chr2_4:8196058-8196077 | None:intergenic | 45.0% |
| TGGCTGCAACAGAAAGATGA+TGG | + | chr2_4:8196514-8196533 | Msa0312950:CDS | 45.0% | |
| GGCTGCAACAGAAAGATGAT+GGG | + | chr2_4:8196515-8196534 | Msa0312950:CDS | 45.0% | |
| ! | CATCAAGCAGTTTTTGCAGG+TGG | - | chr2_4:8196549-8196568 | None:intergenic | 45.0% |
| ! | CCTCATCAAGCAGTTTTTGC+AGG | - | chr2_4:8196552-8196571 | None:intergenic | 45.0% |
| CCTGCAAAAACTGCTTGATG+AGG | + | chr2_4:8196549-8196568 | Msa0312950:CDS | 45.0% | |
| TGATGAGGGAAGTTTCTACG+AGG | + | chr2_4:8196564-8196583 | Msa0312950:CDS | 45.0% | |
| TCTACGAGGCTTCAGAAATC+TGG | + | chr2_4:8196578-8196597 | Msa0312950:CDS | 45.0% | |
| AGTGGTGAATGATGCTCTTG+TGG | + | chr2_4:8196859-8196878 | Msa0312950:intron | 45.0% | |
| TCGATAGAGTGAAGTCATCG+CGG | - | chr2_4:8197128-8197147 | None:intergenic | 45.0% | |
| ! | TGCAGGGGAACACACATTTT+TGG | + | chr2_4:8197342-8197361 | Msa0312950:intron | 45.0% |
| TTGCCATCTCAAACTCAGCT+TGG | - | chr2_4:8197429-8197448 | None:intergenic | 45.0% | |
| ! | AAGCTGAGTTTGAGATGGCA+AGG | + | chr2_4:8197428-8197447 | Msa0312950:CDS | 45.0% |
| ! | AGCTGAGTTTGAGATGGCAA+GGG | + | chr2_4:8197429-8197448 | Msa0312950:CDS | 45.0% |
| ACTTTCCCAACAAACACCTC+GGG | - | chr2_4:8197490-8197509 | None:intergenic | 45.0% | |
| AAAAAATGCACATGGGGCCA+TGG | + | chr2_4:8197572-8197591 | Msa0312950:CDS | 45.0% | |
| ATGTACCTATGCTTCCTCCA+TGG | - | chr2_4:8197592-8197611 | None:intergenic | 45.0% | |
| ACAGCTGTGCAATGCAATGT+TGG | - | chr2_4:8197748-8197767 | None:intergenic | 45.0% | |
| ! | AATCATGGGTGTTACCTCCT+TGG | + | chr2_4:8195806-8195825 | Msa0312950:exon | 45.0% |
| CAGGAACCTAGTAGACTTTC+TGG | - | chr2_4:8195832-8195851 | None:intergenic | 45.0% | |
| GTTCCTGACGATTAATCGTC+AGG | + | chr2_4:8195845-8195864 | Msa0312950:CDS | 45.0% | |
| CAATCTTCAGACACGAGTGT+TGG | + | chr2_4:8195888-8195907 | Msa0312950:CDS | 45.0% | |
| ACTGACGAAGTGATCATGTC+GGG | + | chr2_4:8195936-8195955 | Msa0312950:CDS | 45.0% | |
| !! | GTTGGCTTTCCCAAAAGCTT+CGG | - | chr2_4:8196058-8196077 | None:intergenic | 45.0% |
| TGGCTGCAACAGAAAGATGA+TGG | + | chr2_4:8196514-8196533 | Msa0312950:CDS | 45.0% | |
| GGCTGCAACAGAAAGATGAT+GGG | + | chr2_4:8196515-8196534 | Msa0312950:CDS | 45.0% | |
| ! | CATCAAGCAGTTTTTGCAGG+TGG | - | chr2_4:8196549-8196568 | None:intergenic | 45.0% |
| ! | CCTCATCAAGCAGTTTTTGC+AGG | - | chr2_4:8196552-8196571 | None:intergenic | 45.0% |
| CCTGCAAAAACTGCTTGATG+AGG | + | chr2_4:8196549-8196568 | Msa0312950:CDS | 45.0% | |
| TGATGAGGGAAGTTTCTACG+AGG | + | chr2_4:8196564-8196583 | Msa0312950:CDS | 45.0% | |
| TCTACGAGGCTTCAGAAATC+TGG | + | chr2_4:8196578-8196597 | Msa0312950:CDS | 45.0% | |
| AGTGGTGAATGATGCTCTTG+TGG | + | chr2_4:8196859-8196878 | Msa0312950:intron | 45.0% | |
| TCGATAGAGTGAAGTCATCG+CGG | - | chr2_4:8197128-8197147 | None:intergenic | 45.0% | |
| ! | TGCAGGGGAACACACATTTT+TGG | + | chr2_4:8197342-8197361 | Msa0312950:intron | 45.0% |
| TTGCCATCTCAAACTCAGCT+TGG | - | chr2_4:8197429-8197448 | None:intergenic | 45.0% | |
| ! | AAGCTGAGTTTGAGATGGCA+AGG | + | chr2_4:8197428-8197447 | Msa0312950:CDS | 45.0% |
| ! | AGCTGAGTTTGAGATGGCAA+GGG | + | chr2_4:8197429-8197448 | Msa0312950:CDS | 45.0% |
| ACTTTCCCAACAAACACCTC+GGG | - | chr2_4:8197490-8197509 | None:intergenic | 45.0% | |
| AAAAAATGCACATGGGGCCA+TGG | + | chr2_4:8197572-8197591 | Msa0312950:CDS | 45.0% | |
| ATGTACCTATGCTTCCTCCA+TGG | - | chr2_4:8197592-8197611 | None:intergenic | 45.0% | |
| ACAGCTGTGCAATGCAATGT+TGG | - | chr2_4:8197748-8197767 | None:intergenic | 45.0% | |
| !!! | TGAATTTTTAATATTATATA+TGG | + | chr2_4:8196101-8196120 | Msa0312950:intron | 5.0% |
| !!! | TGAATTTTTAATATTATATA+TGG | + | chr2_4:8196101-8196120 | Msa0312950:intron | 5.0% |
| ! | AGTAGACTTTCTGGCCAAGG+AGG | - | chr2_4:8195823-8195842 | None:intergenic | 50.0% |
| ! | CCTAGTAGACTTTCTGGCCA+AGG | - | chr2_4:8195826-8195845 | None:intergenic | 50.0% |
| CCTTGGCCAGAAAGTCTACT+AGG | + | chr2_4:8195823-8195842 | Msa0312950:CDS | 50.0% | |
| CAGGATAGTCTCGAGTCTGA+AGG | + | chr2_4:8195864-8195883 | Msa0312950:CDS | 50.0% | |
| ! | AAGCCAACATCTTGGTGTGC+AGG | + | chr2_4:8196070-8196089 | Msa0312950:CDS | 50.0% |
| TCACCTGCACACCAAGATGT+TGG | - | chr2_4:8196076-8196095 | None:intergenic | 50.0% | |
| AAAAGCTGTGGAGCAGTGTG+TGG | + | chr2_4:8196494-8196513 | Msa0312950:CDS | 50.0% | |
| ! | GCAGTTTTTGCAGGTGGTGA+TGG | - | chr2_4:8196543-8196562 | None:intergenic | 50.0% |
| ! | GCTGAGTTTGAGATGGCAAG+GGG | + | chr2_4:8197430-8197449 | Msa0312950:CDS | 50.0% |
| ! | AGTAGACTTTCTGGCCAAGG+AGG | - | chr2_4:8195823-8195842 | None:intergenic | 50.0% |
| ! | CCTAGTAGACTTTCTGGCCA+AGG | - | chr2_4:8195826-8195845 | None:intergenic | 50.0% |
| CCTTGGCCAGAAAGTCTACT+AGG | + | chr2_4:8195823-8195842 | Msa0312950:CDS | 50.0% | |
| CAGGATAGTCTCGAGTCTGA+AGG | + | chr2_4:8195864-8195883 | Msa0312950:CDS | 50.0% | |
| ! | AAGCCAACATCTTGGTGTGC+AGG | + | chr2_4:8196070-8196089 | Msa0312950:CDS | 50.0% |
| TCACCTGCACACCAAGATGT+TGG | - | chr2_4:8196076-8196095 | None:intergenic | 50.0% | |
| AAAAGCTGTGGAGCAGTGTG+TGG | + | chr2_4:8196494-8196513 | Msa0312950:CDS | 50.0% | |
| ! | GCAGTTTTTGCAGGTGGTGA+TGG | - | chr2_4:8196543-8196562 | None:intergenic | 50.0% |
| ! | GCTGAGTTTGAGATGGCAAG+GGG | + | chr2_4:8197430-8197449 | Msa0312950:CDS | 50.0% |
| ! | AAGCTGCCCGAGGTGTTTGT+TGG | + | chr2_4:8197481-8197500 | Msa0312950:CDS | 55.0% |
| ! | AGCTGCCCGAGGTGTTTGTT+GGG | + | chr2_4:8197482-8197501 | Msa0312950:CDS | 55.0% |
| AAATGCACATGGGGCCATGG+AGG | + | chr2_4:8197575-8197594 | Msa0312950:CDS | 55.0% | |
| ! | AAGCTGCCCGAGGTGTTTGT+TGG | + | chr2_4:8197481-8197500 | Msa0312950:CDS | 55.0% |
| ! | AGCTGCCCGAGGTGTTTGTT+GGG | + | chr2_4:8197482-8197501 | Msa0312950:CDS | 55.0% |
| AAATGCACATGGGGCCATGG+AGG | + | chr2_4:8197575-8197594 | Msa0312950:CDS | 55.0% | |
| ! | TGGGGCCATGGAGGAAGCAT+AGG | + | chr2_4:8197584-8197603 | Msa0312950:CDS | 60.0% |
| ! | TGGGGCCATGGAGGAAGCAT+AGG | + | chr2_4:8197584-8197603 | Msa0312950:CDS | 60.0% |
| ACTCGTGCAGAAGCTGCCCG+AGG | + | chr2_4:8197471-8197490 | Msa0312950:CDS | 65.0% | |
| ACTCGTGCAGAAGCTGCCCG+AGG | + | chr2_4:8197471-8197490 | Msa0312950:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 8195777 | 8197959 | 8195777 | ID=Msa0312950;Name=Msa0312950 |
| chr2_4 | mRNA | 8195777 | 8197959 | 8195777 | ID=Msa0312950-mRNA-1;Parent=Msa0312950;Name=Msa0312950-mRNA-1;_AED=0.37;_eAED=0.37;_QI=33|1|1|1|1|1|3|179|316 |
| chr2_4 | exon | 8195777 | 8196091 | 8195777 | ID=Msa0312950-mRNA-1:exon:3164;Parent=Msa0312950-mRNA-1 |
| chr2_4 | exon | 8196422 | 8196656 | 8196422 | ID=Msa0312950-mRNA-1:exon:3165;Parent=Msa0312950-mRNA-1 |
| chr2_4 | exon | 8197347 | 8197959 | 8197347 | ID=Msa0312950-mRNA-1:exon:3166;Parent=Msa0312950-mRNA-1 |
| chr2_4 | five_prime_UTR | 8195777 | 8195809 | 8195777 | ID=Msa0312950-mRNA-1:five_prime_utr;Parent=Msa0312950-mRNA-1 |
| chr2_4 | CDS | 8195810 | 8196091 | 8195810 | ID=Msa0312950-mRNA-1:cds;Parent=Msa0312950-mRNA-1 |
| chr2_4 | CDS | 8196422 | 8196656 | 8196422 | ID=Msa0312950-mRNA-1:cds;Parent=Msa0312950-mRNA-1 |
| chr2_4 | CDS | 8197347 | 8197780 | 8197347 | ID=Msa0312950-mRNA-1:cds;Parent=Msa0312950-mRNA-1 |
| chr2_4 | three_prime_UTR | 8197781 | 8197959 | 8197781 | ID=Msa0312950-mRNA-1:three_prime_utr;Parent=Msa0312950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
