Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716150 | XP_003611914.3 | 97.384 | 344 | 8 | 1 | 6 | 349 | 1 | 343 | 0.0 | 690 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716150 | sp|O64823|MCU2_ARATH | 49.107 | 336 | 143 | 7 | 6 | 328 | 1 | 321 | 1.78e-110 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716150 | G7KAV9 | 97.384 | 344 | 8 | 1 | 6 | 349 | 1 | 343 | 0.0 | 690 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0612590 | Msa0716150 | 0.844679 | 6.512301e-59 | -8.615850e-47 |
| Msa0695650 | Msa0716150 | 0.826309 | 2.911585e-54 | -8.615850e-47 |
| Msa0716150 | Msa0798790 | 0.909715 | 4.189626e-82 | -8.615850e-47 |
| Msa0716150 | Msa0837320 | 0.875119 | 3.961793e-68 | -8.615850e-47 |
| Msa0716150 | Msa0888980 | 0.825075 | 5.711358e-54 | -8.615850e-47 |
| Msa0716150 | Msa1158620 | 0.815068 | 1.117420e-51 | -8.615850e-47 |
| Msa0716150 | Msa1249600 | 0.802324 | 5.921370e-49 | -8.615850e-47 |
| Msa0716150 | Msa1407350 | 0.925186 | 2.579822e-90 | -8.615850e-47 |
| Msa0474570 | Msa0716150 | 0.803125 | 4.047093e-49 | -8.615850e-47 |
| Msa0312890 | Msa0716150 | 0.824945 | 6.129317e-54 | -8.615850e-47 |
| Msa0312950 | Msa0716150 | 0.807829 | 4.173997e-50 | -8.615850e-47 |
| Msa0312970 | Msa0716150 | 0.809023 | 2.322594e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716150 | MtrunA17_Chr8g0373631 | 54.324 | 370 | 130 | 8 | 6 | 348 | 1 | 358 | 5.07e-132 | 381 |
| Msa0716150 | MtrunA17_Chr5g0403551 | 93.939 | 198 | 11 | 1 | 1 | 198 | 19 | 215 | 9.47e-122 | 349 |
| Msa0716150 | MtrunA17_Chr5g0403541 | 98.462 | 130 | 2 | 0 | 220 | 349 | 1 | 130 | 1.09e-93 | 275 |
| Msa0716150 | MtrunA17_Chr1g0154611 | 41.265 | 332 | 182 | 5 | 6 | 330 | 1 | 326 | 1.29e-82 | 254 |
| Msa0716150 | MtrunA17_Chr3g0108861 | 34.247 | 219 | 142 | 1 | 115 | 331 | 99 | 317 | 3.04e-45 | 157 |
| Msa0716150 | MtrunA17_Chr5g0433141 | 33.023 | 215 | 142 | 1 | 115 | 327 | 92 | 306 | 1.90e-41 | 147 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716150 | AT2G23790.1 | 49.107 | 336 | 143 | 7 | 6 | 328 | 1 | 321 | 1.81e-111 | 328 |
| Msa0716150 | AT4G36820.1 | 46.407 | 334 | 153 | 6 | 8 | 329 | 4 | 323 | 1.70e-101 | 303 |
| Msa0716150 | AT5G66650.1 | 45.732 | 328 | 163 | 4 | 6 | 331 | 1 | 315 | 2.20e-96 | 289 |
| Msa0716150 | AT5G42610.1 | 43.511 | 262 | 142 | 4 | 70 | 326 | 21 | 281 | 1.30e-71 | 225 |
| Msa0716150 | AT1G57610.2 | 35.071 | 211 | 132 | 4 | 119 | 325 | 46 | 255 | 3.95e-40 | 143 |
| Msa0716150 | AT1G57610.1 | 35.071 | 211 | 132 | 4 | 119 | 325 | 46 | 255 | 3.95e-40 | 143 |
| Msa0716150 | AT1G09575.1 | 31.858 | 226 | 150 | 3 | 104 | 326 | 36 | 260 | 2.15e-36 | 133 |
| Msa0716150 | AT1G09575.2 | 31.858 | 226 | 150 | 3 | 104 | 326 | 36 | 260 | 2.15e-36 | 133 |
| Msa0716150 | AT1G57610.3 | 34.783 | 161 | 100 | 4 | 119 | 275 | 46 | 205 | 8.16e-24 | 97.8 |
| Msa0716150 | AT1G57610.4 | 34.783 | 161 | 100 | 4 | 119 | 275 | 46 | 205 | 8.16e-24 | 97.8 |
Find 76 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTAATGAGACTCACATTT+TGG | 0.177784 | 5_1:-9558227 | Msa0716150:CDS |
| CTTGGTTGATCGTGAGCTTT+GGG | 0.230410 | 5_1:-9558283 | Msa0716150:CDS |
| GGGAGGTTTGGGTTTCATTA+TGG | 0.238660 | 5_1:-9558262 | Msa0716150:CDS |
| CGTGAGCTTTGGGGAGGTTT+GGG | 0.254572 | 5_1:-9558273 | Msa0716150:CDS |
| AAATAATAATTTACCTGTTC+AGG | 0.280313 | 5_1:+9559290 | None:intergenic |
| TCTGCGGCTGTGATTATCTT+AGG | 0.286135 | 5_1:-9559332 | Msa0716150:CDS |
| CCTTGGTTGATCGTGAGCTT+TGG | 0.301670 | 5_1:-9558284 | Msa0716150:CDS |
| TTGAACCCGGTTTGTTGTTT+CGG | 0.305567 | 5_1:+9559659 | None:intergenic |
| AAGCAGACTTTGGAGTGTTT+TGG | 0.306984 | 5_1:+9558398 | None:intergenic |
| AAAGAGTTGCGTAACGGTTT+CGG | 0.307406 | 5_1:-9559429 | Msa0716150:CDS |
| TCGCCTGAACCAGGCGATAA+TGG | 0.336873 | 5_1:-9559722 | Msa0716150:CDS |
| TTCTATGAATTTATCATCAA+TGG | 0.344465 | 5_1:-9559864 | Msa0716150:exon |
| TCGTGAGCTTTGGGGAGGTT+TGG | 0.348113 | 5_1:-9558274 | Msa0716150:CDS |
| TTCAGCTTCTCCATCAGGTT+TGG | 0.348246 | 5_1:+9559620 | None:intergenic |
| CAAAACGCCGGCGGAGAAAC+CGG | 0.374721 | 5_1:-9559549 | Msa0716150:CDS |
| GAATCTGATACCTTTATTCC+CGG | 0.374775 | 5_1:+9558369 | None:intergenic |
| GCTTCCTACACCGGGAATAA+AGG | 0.384345 | 5_1:-9558379 | Msa0716150:CDS |
| GCTCCATTATCGCCTGGTTC+AGG | 0.392843 | 5_1:+9559719 | None:intergenic |
| TTGTTGTTTCGGTTCAAAAC+CGG | 0.401588 | 5_1:+9559670 | None:intergenic |
| AAGAAAAGAATACGAAGAAA+TGG | 0.402281 | 5_1:-9558343 | Msa0716150:CDS |
| GGAGCTTACTTGGGATGTAA+TGG | 0.424436 | 5_1:-9558205 | Msa0716150:CDS |
| GGATGTTAAATAGAAGCAAA+TGG | 0.426288 | 5_1:+9558179 | None:intergenic |
| TCTAAAAGAAGGTTCTTTCC+CGG | 0.428851 | 5_1:+9558119 | None:intergenic |
| CCGTCCTCCTTCGGCGTCGC+CGG | 0.437585 | 5_1:+9559530 | None:intergenic |
| CTCACGATCAACCAAGGCTT+CGG | 0.444848 | 5_1:+9558290 | None:intergenic |
| GGCGTCGCCGGTTTCTCCGC+CGG | 0.448751 | 5_1:+9559542 | None:intergenic |
| TTCAGGCGAAATGTCAGATT+CGG | 0.461196 | 5_1:+9559736 | None:intergenic |
| CCGGTGTAGGAAGCAGACTT+TGG | 0.466737 | 5_1:+9558388 | None:intergenic |
| AGATTCATTCACAAGCGAAC+CGG | 0.468424 | 5_1:-9559689 | Msa0716150:CDS |
| TTGAATGCTCCATTATCGCC+TGG | 0.482511 | 5_1:+9559713 | None:intergenic |
| TATACATTCTTCCTCAAGAC+CGG | 0.484488 | 5_1:-9558138 | Msa0716150:CDS |
| CAAAATTGTGAAGCTTCATA+AGG | 0.484983 | 5_1:+9558058 | None:intergenic |
| TCAAACATAGGAGGAACATT+GGG | 0.496062 | 5_1:+9557997 | None:intergenic |
| ACATCCATGTACTTCATGAC+TGG | 0.497631 | 5_1:-9558162 | Msa0716150:CDS |
| ACGCTAACACCGTCCTCCTT+CGG | 0.498436 | 5_1:+9559521 | None:intergenic |
| TTTGAACCGAAACAACAAAC+CGG | 0.498499 | 5_1:-9559665 | Msa0716150:CDS |
| GATGTTAAATAGAAGCAAAT+GGG | 0.503470 | 5_1:+9558180 | None:intergenic |
| GGCTTCGGCTTCTTCGTCGA+TGG | 0.503504 | 5_1:+9558305 | None:intergenic |
| ATCAAACATAGGAGGAACAT+TGG | 0.516274 | 5_1:+9557996 | None:intergenic |
| GGAGAAACCGGCGACGCCGA+AGG | 0.518823 | 5_1:-9559537 | Msa0716150:CDS |
| AGGAATCGTATTCGGTTGGA+TGG | 0.519037 | 5_1:-9559581 | Msa0716150:CDS |
| CGACGAAGAAGCCGAAGCCT+TGG | 0.519418 | 5_1:-9558301 | Msa0716150:CDS |
| ACAATGGTAGGAATCGTATT+CGG | 0.527920 | 5_1:-9559589 | Msa0716150:CDS |
| TCTGACATTTCGCCTGAACC+AGG | 0.534308 | 5_1:-9559731 | Msa0716150:CDS |
| CCAAAGTCTGCTTCCTACAC+CGG | 0.541189 | 5_1:-9558388 | Msa0716150:CDS |
| TGAAAACAATGGACAATGGT+AGG | 0.544936 | 5_1:-9559601 | Msa0716150:CDS |
| AATTAGAGATGGTGAAATCA+AGG | 0.549065 | 5_1:-9559466 | Msa0716150:CDS |
| TTCAGATGTGAGAGCAGTGG+AGG | 0.554859 | 5_1:+9557972 | None:intergenic |
| GATACCTTTATTCCCGGTGT+AGG | 0.564773 | 5_1:+9558375 | None:intergenic |
| TTGAACCGAAACAACAAACC+GGG | 0.566687 | 5_1:-9559664 | Msa0716150:CDS |
| CAAAGTCTGCTTCCTACACC+GGG | 0.576474 | 5_1:-9558387 | Msa0716150:CDS |
| GCTTCATCAACCAAACCTGA+TGG | 0.578108 | 5_1:-9559630 | Msa0716150:CDS |
| TGGTAGGAATCGTATTCGGT+TGG | 0.582305 | 5_1:-9559585 | Msa0716150:CDS |
| ATACATTCTTCCTCAAGACC+GGG | 0.582455 | 5_1:-9558137 | Msa0716150:CDS |
| ATGAAGCTCTGATTTGAACC+CGG | 0.585317 | 5_1:+9559646 | None:intergenic |
| GAAACCGGCGACGCCGAAGG+AGG | 0.590600 | 5_1:-9559534 | Msa0716150:CDS |
| CCGGCGACGCCGAAGGAGGA+CGG | 0.596414 | 5_1:-9559530 | Msa0716150:CDS |
| AGATGTGAAGAAATTGTTGA+AGG | 0.600974 | 5_1:-9559495 | Msa0716150:CDS |
| TTGTTCTGATCATGATCAAG+CGG | 0.601744 | 5_1:-9559381 | Msa0716150:CDS |
| GTTGATCGTGAGCTTTGGGG+AGG | 0.603066 | 5_1:-9558279 | Msa0716150:CDS |
| ATCATCAAAGAGTTGCGTAA+CGG | 0.603173 | 5_1:-9559435 | Msa0716150:CDS |
| GCAGTGGAGGAATCAAACAT+AGG | 0.610101 | 5_1:+9557985 | None:intergenic |
| ATAACCAGTCATGAAGTACA+TGG | 0.615299 | 5_1:+9558158 | None:intergenic |
| AAGGTTCTTTCCCGGTCTTG+AGG | 0.616769 | 5_1:+9558127 | None:intergenic |
| TTAAGAGAACGCTTGCACAA+CGG | 0.623956 | 5_1:-9559838 | Msa0716150:CDS |
| CCAAAGCTCACGATCAACCA+AGG | 0.631926 | 5_1:+9558284 | None:intergenic |
| GAAGATGCTTGATGATTCTG+CGG | 0.634104 | 5_1:-9559348 | Msa0716150:CDS |
| AAGGAGGACGGTGTTAGCGT+CGG | 0.634588 | 5_1:-9559518 | Msa0716150:CDS |
| GTGGAGGAATCAAACATAGG+AGG | 0.637959 | 5_1:+9557988 | None:intergenic |
| GATGGAGAAGCTGAAAACAA+TGG | 0.643760 | 5_1:-9559612 | Msa0716150:CDS |
| TGGATTGATCATCAAAACGC+CGG | 0.650680 | 5_1:-9559561 | Msa0716150:CDS |
| TTGGTTGATCGTGAGCTTTG+GGG | 0.652972 | 5_1:-9558282 | Msa0716150:CDS |
| AAGCTGAAAACAATGGACAA+TGG | 0.660072 | 5_1:-9559605 | Msa0716150:CDS |
| TGTGAAGAAATTGTTGAAGG+TGG | 0.674048 | 5_1:-9559492 | Msa0716150:CDS |
| GAAGGTGGCGCAATTAGAGA+TGG | 0.677578 | 5_1:-9559477 | Msa0716150:CDS |
| ATTGATCATCAAAACGCCGG+CGG | 0.739309 | 5_1:-9559558 | Msa0716150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATGTTTTATTTAATTTG+TGG | - | chr5_1:9558655-9558674 | Msa0716150:intron | 10.0% |
| !!! | ATATGTTTTATTTAATTTGT+GGG | - | chr5_1:9558656-9558675 | Msa0716150:intron | 10.0% |
| !!! | TATATGTTTTATTTAATTTG+TGG | - | chr5_1:9558655-9558674 | Msa0716150:intron | 10.0% |
| !!! | ATATGTTTTATTTAATTTGT+GGG | - | chr5_1:9558656-9558675 | Msa0716150:intron | 10.0% |
| !!! | TGAGTTTTTTAATCTATTAT+TGG | - | chr5_1:9558627-9558646 | Msa0716150:intron | 15.0% |
| !!! | GAGTTTTTTAATCTATTATT+GGG | - | chr5_1:9558628-9558647 | Msa0716150:intron | 15.0% |
| !! | TAATAATGTAATGTTAATGA+TGG | - | chr5_1:9558693-9558712 | Msa0716150:intron | 15.0% |
| !! | TATAGTTAATTCCATTTATT+TGG | - | chr5_1:9558760-9558779 | Msa0716150:intron | 15.0% |
| !!! | TTTTTTTTCCTATTTACTTT+TGG | + | chr5_1:9559395-9559414 | None:intergenic | 15.0% |
| !!! | TGAGTTTTTTAATCTATTAT+TGG | - | chr5_1:9558627-9558646 | Msa0716150:intron | 15.0% |
| !!! | GAGTTTTTTAATCTATTATT+GGG | - | chr5_1:9558628-9558647 | Msa0716150:intron | 15.0% |
| !! | TAATAATGTAATGTTAATGA+TGG | - | chr5_1:9558693-9558712 | Msa0716150:intron | 15.0% |
| !! | TATAGTTAATTCCATTTATT+TGG | - | chr5_1:9558760-9558779 | Msa0716150:intron | 15.0% |
| !!! | TTTTTTTTCCTATTTACTTT+TGG | + | chr5_1:9559395-9559414 | None:intergenic | 15.0% |
| !! | TTCTATGAATTTATCATCAA+TGG | - | chr5_1:9557994-9558013 | Msa0716150:CDS | 20.0% |
| !! | AAATAATAATTTACCTGTTC+AGG | + | chr5_1:9558571-9558590 | None:intergenic | 20.0% |
| !! | ATTATCAGTTTCCAAATAAA+TGG | + | chr5_1:9558774-9558793 | None:intergenic | 20.0% |
| !! | CCTAGTCTAAAAATAATTAA+GGG | + | chr5_1:9558925-9558944 | None:intergenic | 20.0% |
| !! | TCCTAGTCTAAAAATAATTA+AGG | + | chr5_1:9558926-9558945 | None:intergenic | 20.0% |
| !! | ATTACCATTAATTCAAAGTT+AGG | - | chr5_1:9559007-9559026 | Msa0716150:intron | 20.0% |
| !! | TTACCATTAATTCAAAGTTA+GGG | - | chr5_1:9559008-9559027 | Msa0716150:intron | 20.0% |
| !! | AAGAAAAACCAAAAGTAAAT+AGG | - | chr5_1:9559384-9559403 | Msa0716150:CDS | 20.0% |
| !! | TTCTATGAATTTATCATCAA+TGG | - | chr5_1:9557994-9558013 | Msa0716150:CDS | 20.0% |
| !! | AAATAATAATTTACCTGTTC+AGG | + | chr5_1:9558571-9558590 | None:intergenic | 20.0% |
| !! | ATTATCAGTTTCCAAATAAA+TGG | + | chr5_1:9558774-9558793 | None:intergenic | 20.0% |
| !! | CCTAGTCTAAAAATAATTAA+GGG | + | chr5_1:9558925-9558944 | None:intergenic | 20.0% |
| !! | TCCTAGTCTAAAAATAATTA+AGG | + | chr5_1:9558926-9558945 | None:intergenic | 20.0% |
| !! | ATTACCATTAATTCAAAGTT+AGG | - | chr5_1:9559007-9559026 | Msa0716150:intron | 20.0% |
| !! | TTACCATTAATTCAAAGTTA+GGG | - | chr5_1:9559008-9559027 | Msa0716150:intron | 20.0% |
| !! | AAGAAAAACCAAAAGTAAAT+AGG | - | chr5_1:9559384-9559403 | Msa0716150:CDS | 20.0% |
| !! | TGTAATGTTAATGATGGAAA+TGG | - | chr5_1:9558699-9558718 | Msa0716150:intron | 25.0% |
| !!! | CCCTTAATTATTTTTAGACT+AGG | - | chr5_1:9558922-9558941 | Msa0716150:intron | 25.0% |
| ! | TACCATTAATTCAAAGTTAG+GGG | - | chr5_1:9559009-9559028 | Msa0716150:intron | 25.0% |
| ! | TTAAAAATCTTAACCAAGAG+AGG | + | chr5_1:9559085-9559104 | None:intergenic | 25.0% |
| !!! | GATTTTGACAAAAGTTACTT+TGG | - | chr5_1:9559218-9559237 | Msa0716150:intron | 25.0% |
| ! | TTTCACAACTATACCTAAAA+GGG | + | chr5_1:9559328-9559347 | None:intergenic | 25.0% |
| ! | ATTTCACAACTATACCTAAA+AGG | + | chr5_1:9559329-9559348 | None:intergenic | 25.0% |
| !!! | TTACTTTTGGTTTTTCTTCT+AGG | + | chr5_1:9559382-9559401 | None:intergenic | 25.0% |
| !! | CACAAAATTTTACAGAGTTT+GGG | + | chr5_1:9559430-9559449 | None:intergenic | 25.0% |
| !! | TCACAAAATTTTACAGAGTT+TGG | + | chr5_1:9559431-9559450 | None:intergenic | 25.0% |
| !! | TCTGTAAAATTTTGTGATAC+AGG | - | chr5_1:9559434-9559453 | Msa0716150:CDS | 25.0% |
| ! | AAGAAAAGAATACGAAGAAA+TGG | - | chr5_1:9559515-9559534 | Msa0716150:CDS | 25.0% |
| !! | TATTAATGAGACTCACATTT+TGG | - | chr5_1:9559631-9559650 | Msa0716150:CDS | 25.0% |
| !! | ATTAATGAGACTCACATTTT+GGG | - | chr5_1:9559632-9559651 | Msa0716150:CDS | 25.0% |
| ! | GATGTTAAATAGAAGCAAAT+GGG | + | chr5_1:9559681-9559700 | None:intergenic | 25.0% |
| !! | TGTAATGTTAATGATGGAAA+TGG | - | chr5_1:9558699-9558718 | Msa0716150:intron | 25.0% |
| !!! | CCCTTAATTATTTTTAGACT+AGG | - | chr5_1:9558922-9558941 | Msa0716150:intron | 25.0% |
| ! | TACCATTAATTCAAAGTTAG+GGG | - | chr5_1:9559009-9559028 | Msa0716150:intron | 25.0% |
| ! | TTAAAAATCTTAACCAAGAG+AGG | + | chr5_1:9559085-9559104 | None:intergenic | 25.0% |
| !!! | GATTTTGACAAAAGTTACTT+TGG | - | chr5_1:9559218-9559237 | Msa0716150:intron | 25.0% |
| ! | TTTCACAACTATACCTAAAA+GGG | + | chr5_1:9559328-9559347 | None:intergenic | 25.0% |
| ! | ATTTCACAACTATACCTAAA+AGG | + | chr5_1:9559329-9559348 | None:intergenic | 25.0% |
| !!! | TTACTTTTGGTTTTTCTTCT+AGG | + | chr5_1:9559382-9559401 | None:intergenic | 25.0% |
| !! | CACAAAATTTTACAGAGTTT+GGG | + | chr5_1:9559430-9559449 | None:intergenic | 25.0% |
| !! | TCACAAAATTTTACAGAGTT+TGG | + | chr5_1:9559431-9559450 | None:intergenic | 25.0% |
| !! | TCTGTAAAATTTTGTGATAC+AGG | - | chr5_1:9559434-9559453 | Msa0716150:CDS | 25.0% |
| ! | AAGAAAAGAATACGAAGAAA+TGG | - | chr5_1:9559515-9559534 | Msa0716150:CDS | 25.0% |
| !! | TATTAATGAGACTCACATTT+TGG | - | chr5_1:9559631-9559650 | Msa0716150:CDS | 25.0% |
| !! | ATTAATGAGACTCACATTTT+GGG | - | chr5_1:9559632-9559651 | Msa0716150:CDS | 25.0% |
| ! | GATGTTAAATAGAAGCAAAT+GGG | + | chr5_1:9559681-9559700 | None:intergenic | 25.0% |
| ! | GAGATTTTGTGATGAGATTT+TGG | + | chr5_1:9558059-9558078 | None:intergenic | 30.0% |
| !!! | TTCGGATTTTGAAACACTAA+CGG | + | chr5_1:9558107-9558126 | None:intergenic | 30.0% |
| AGATGTGAAGAAATTGTTGA+AGG | - | chr5_1:9558363-9558382 | Msa0716150:CDS | 30.0% | |
| AATTAGAGATGGTGAAATCA+AGG | - | chr5_1:9558392-9558411 | Msa0716150:CDS | 30.0% | |
| AAATGGTGAAGATCAAAGAT+AGG | - | chr5_1:9558716-9558735 | Msa0716150:intron | 30.0% | |
| ! | AACAATGTTTCATTTTCCTG+TGG | + | chr5_1:9558827-9558846 | None:intergenic | 30.0% |
| !! | TGTTTCGAGAAAAGTGTTAA+AGG | - | chr5_1:9558846-9558865 | Msa0716150:intron | 30.0% |
| ACCATTAATTCAAAGTTAGG+GGG | - | chr5_1:9559010-9559029 | Msa0716150:intron | 30.0% | |
| !! | TTTATTTTCCAATCCTCTCT+TGG | - | chr5_1:9559069-9559088 | Msa0716150:intron | 30.0% |
| ! | ACTTTTGTCAAAATCACACT+GGG | + | chr5_1:9559213-9559232 | None:intergenic | 30.0% |
| ! | AACTTTTGTCAAAATCACAC+TGG | + | chr5_1:9559214-9559233 | None:intergenic | 30.0% |
| TCATCTAAACATACACTTGA+TGG | - | chr5_1:9559267-9559286 | Msa0716150:intron | 30.0% | |
| ! | TTCTCATATATGTCCCTTTT+AGG | - | chr5_1:9559312-9559331 | Msa0716150:CDS | 30.0% |
| AGAAATGGAGAAAAAGAAGT+TGG | - | chr5_1:9559530-9559549 | Msa0716150:CDS | 30.0% | |
| GGATGTTAAATAGAAGCAAA+TGG | + | chr5_1:9559682-9559701 | None:intergenic | 30.0% | |
| ! | TCGTAAAAACCTCTAAAAGA+AGG | + | chr5_1:9559753-9559772 | None:intergenic | 30.0% |
| CAAAATTGTGAAGCTTCATA+AGG | + | chr5_1:9559803-9559822 | None:intergenic | 30.0% | |
| ! | GAGATTTTGTGATGAGATTT+TGG | + | chr5_1:9558059-9558078 | None:intergenic | 30.0% |
| !!! | TTCGGATTTTGAAACACTAA+CGG | + | chr5_1:9558107-9558126 | None:intergenic | 30.0% |
| AGATGTGAAGAAATTGTTGA+AGG | - | chr5_1:9558363-9558382 | Msa0716150:CDS | 30.0% | |
| AATTAGAGATGGTGAAATCA+AGG | - | chr5_1:9558392-9558411 | Msa0716150:CDS | 30.0% | |
| AAATGGTGAAGATCAAAGAT+AGG | - | chr5_1:9558716-9558735 | Msa0716150:intron | 30.0% | |
| ! | AACAATGTTTCATTTTCCTG+TGG | + | chr5_1:9558827-9558846 | None:intergenic | 30.0% |
| !! | TGTTTCGAGAAAAGTGTTAA+AGG | - | chr5_1:9558846-9558865 | Msa0716150:intron | 30.0% |
| ACCATTAATTCAAAGTTAGG+GGG | - | chr5_1:9559010-9559029 | Msa0716150:intron | 30.0% | |
| !! | TTTATTTTCCAATCCTCTCT+TGG | - | chr5_1:9559069-9559088 | Msa0716150:intron | 30.0% |
| ! | ACTTTTGTCAAAATCACACT+GGG | + | chr5_1:9559213-9559232 | None:intergenic | 30.0% |
| ! | AACTTTTGTCAAAATCACAC+TGG | + | chr5_1:9559214-9559233 | None:intergenic | 30.0% |
| TCATCTAAACATACACTTGA+TGG | - | chr5_1:9559267-9559286 | Msa0716150:intron | 30.0% | |
| ! | TTCTCATATATGTCCCTTTT+AGG | - | chr5_1:9559312-9559331 | Msa0716150:CDS | 30.0% |
| AGAAATGGAGAAAAAGAAGT+TGG | - | chr5_1:9559530-9559549 | Msa0716150:CDS | 30.0% | |
| GGATGTTAAATAGAAGCAAA+TGG | + | chr5_1:9559682-9559701 | None:intergenic | 30.0% | |
| ! | TCGTAAAAACCTCTAAAAGA+AGG | + | chr5_1:9559753-9559772 | None:intergenic | 30.0% |
| CAAAATTGTGAAGCTTCATA+AGG | + | chr5_1:9559803-9559822 | None:intergenic | 30.0% | |
| !! | TTGTTGTTTCGGTTCAAAAC+CGG | + | chr5_1:9558191-9558210 | None:intergenic | 35.0% |
| TTTGAACCGAAACAACAAAC+CGG | - | chr5_1:9558193-9558212 | Msa0716150:CDS | 35.0% | |
| AAGCTGAAAACAATGGACAA+TGG | - | chr5_1:9558253-9558272 | Msa0716150:CDS | 35.0% | |
| TGAAAACAATGGACAATGGT+AGG | - | chr5_1:9558257-9558276 | Msa0716150:CDS | 35.0% | |
| ACAATGGTAGGAATCGTATT+CGG | - | chr5_1:9558269-9558288 | Msa0716150:CDS | 35.0% | |
| TGTGAAGAAATTGTTGAAGG+TGG | - | chr5_1:9558366-9558385 | Msa0716150:CDS | 35.0% | |
| ATCATCAAAGAGTTGCGTAA+CGG | - | chr5_1:9558423-9558442 | Msa0716150:intron | 35.0% | |
| TTGTTCTGATCATGATCAAG+CGG | - | chr5_1:9558477-9558496 | Msa0716150:intron | 35.0% | |
| ! | TGTTTTTCTTAGACCTGAAC+AGG | - | chr5_1:9558555-9558574 | Msa0716150:intron | 35.0% |
| !! | TAATTTGTGGGTTGATACAG+AGG | - | chr5_1:9558668-9558687 | Msa0716150:intron | 35.0% |
| !! | AATTTGTGGGTTGATACAGA+GGG | - | chr5_1:9558669-9558688 | Msa0716150:intron | 35.0% |
| !!! | TTCTCGTTTTTTTCTTCCAC+AGG | - | chr5_1:9558808-9558827 | Msa0716150:intron | 35.0% |
| ATAGTGATGAATGAAAGCTC+TGG | + | chr5_1:9558887-9558906 | None:intergenic | 35.0% | |
| ACCCCCTAACTTTGAATTAA+TGG | + | chr5_1:9559014-9559033 | None:intergenic | 35.0% | |
| AATCCTCCTTGATTGAATCT+AGG | + | chr5_1:9559037-9559056 | None:intergenic | 35.0% | |
| AATCAAGGAGGATTCACAAT+TGG | - | chr5_1:9559043-9559062 | Msa0716150:intron | 35.0% | |
| ATCAAGGAGGATTCACAATT+GGG | - | chr5_1:9559044-9559063 | Msa0716150:intron | 35.0% | |
| AATCTTAACCAAGAGAGGAT+TGG | + | chr5_1:9559080-9559099 | None:intergenic | 35.0% | |
| AAGACGCATGTCTAACTTAT+AGG | + | chr5_1:9559156-9559175 | None:intergenic | 35.0% | |
| ATAAGTTAGACATGCGTCTT+TGG | - | chr5_1:9559156-9559175 | Msa0716150:intron | 35.0% | |
| CAGTGAGTTCGATGAAATTA+TGG | - | chr5_1:9559184-9559203 | Msa0716150:intron | 35.0% | |
| ATGTGATTTCGTTGAACTCA+CGG | - | chr5_1:9559243-9559262 | Msa0716150:intron | 35.0% | |
| ! | ACATACACTTGATGGTTCAT+AGG | - | chr5_1:9559275-9559294 | Msa0716150:intron | 35.0% |
| GAATCTGATACCTTTATTCC+CGG | + | chr5_1:9559492-9559511 | None:intergenic | 35.0% | |
| ATAACCAGTCATGAAGTACA+TGG | + | chr5_1:9559703-9559722 | None:intergenic | 35.0% | |
| TATACATTCTTCCTCAAGAC+CGG | - | chr5_1:9559720-9559739 | Msa0716150:CDS | 35.0% | |
| TCTAAAAGAAGGTTCTTTCC+CGG | + | chr5_1:9559742-9559761 | None:intergenic | 35.0% | |
| TCAAACATAGGAGGAACATT+GGG | + | chr5_1:9559864-9559883 | None:intergenic | 35.0% | |
| ATCAAACATAGGAGGAACAT+TGG | + | chr5_1:9559865-9559884 | None:intergenic | 35.0% | |
| !! | TTGTTGTTTCGGTTCAAAAC+CGG | + | chr5_1:9558191-9558210 | None:intergenic | 35.0% |
| TTTGAACCGAAACAACAAAC+CGG | - | chr5_1:9558193-9558212 | Msa0716150:CDS | 35.0% | |
| AAGCTGAAAACAATGGACAA+TGG | - | chr5_1:9558253-9558272 | Msa0716150:CDS | 35.0% | |
| TGAAAACAATGGACAATGGT+AGG | - | chr5_1:9558257-9558276 | Msa0716150:CDS | 35.0% | |
| ACAATGGTAGGAATCGTATT+CGG | - | chr5_1:9558269-9558288 | Msa0716150:CDS | 35.0% | |
| TGTGAAGAAATTGTTGAAGG+TGG | - | chr5_1:9558366-9558385 | Msa0716150:CDS | 35.0% | |
| ATCATCAAAGAGTTGCGTAA+CGG | - | chr5_1:9558423-9558442 | Msa0716150:intron | 35.0% | |
| TTGTTCTGATCATGATCAAG+CGG | - | chr5_1:9558477-9558496 | Msa0716150:intron | 35.0% | |
| ! | TGTTTTTCTTAGACCTGAAC+AGG | - | chr5_1:9558555-9558574 | Msa0716150:intron | 35.0% |
| !! | TAATTTGTGGGTTGATACAG+AGG | - | chr5_1:9558668-9558687 | Msa0716150:intron | 35.0% |
| !! | AATTTGTGGGTTGATACAGA+GGG | - | chr5_1:9558669-9558688 | Msa0716150:intron | 35.0% |
| !!! | TTCTCGTTTTTTTCTTCCAC+AGG | - | chr5_1:9558808-9558827 | Msa0716150:intron | 35.0% |
| ATAGTGATGAATGAAAGCTC+TGG | + | chr5_1:9558887-9558906 | None:intergenic | 35.0% | |
| ACCCCCTAACTTTGAATTAA+TGG | + | chr5_1:9559014-9559033 | None:intergenic | 35.0% | |
| AATCCTCCTTGATTGAATCT+AGG | + | chr5_1:9559037-9559056 | None:intergenic | 35.0% | |
| AATCAAGGAGGATTCACAAT+TGG | - | chr5_1:9559043-9559062 | Msa0716150:intron | 35.0% | |
| ATCAAGGAGGATTCACAATT+GGG | - | chr5_1:9559044-9559063 | Msa0716150:intron | 35.0% | |
| AATCTTAACCAAGAGAGGAT+TGG | + | chr5_1:9559080-9559099 | None:intergenic | 35.0% | |
| AAGACGCATGTCTAACTTAT+AGG | + | chr5_1:9559156-9559175 | None:intergenic | 35.0% | |
| ATAAGTTAGACATGCGTCTT+TGG | - | chr5_1:9559156-9559175 | Msa0716150:intron | 35.0% | |
| CAGTGAGTTCGATGAAATTA+TGG | - | chr5_1:9559184-9559203 | Msa0716150:intron | 35.0% | |
| ATGTGATTTCGTTGAACTCA+CGG | - | chr5_1:9559243-9559262 | Msa0716150:intron | 35.0% | |
| ! | ACATACACTTGATGGTTCAT+AGG | - | chr5_1:9559275-9559294 | Msa0716150:intron | 35.0% |
| GAATCTGATACCTTTATTCC+CGG | + | chr5_1:9559492-9559511 | None:intergenic | 35.0% | |
| ATAACCAGTCATGAAGTACA+TGG | + | chr5_1:9559703-9559722 | None:intergenic | 35.0% | |
| TATACATTCTTCCTCAAGAC+CGG | - | chr5_1:9559720-9559739 | Msa0716150:CDS | 35.0% | |
| TCTAAAAGAAGGTTCTTTCC+CGG | + | chr5_1:9559742-9559761 | None:intergenic | 35.0% | |
| TCAAACATAGGAGGAACATT+GGG | + | chr5_1:9559864-9559883 | None:intergenic | 35.0% | |
| ATCAAACATAGGAGGAACAT+TGG | + | chr5_1:9559865-9559884 | None:intergenic | 35.0% | |
| TTAAGAGAACGCTTGCACAA+CGG | - | chr5_1:9558020-9558039 | Msa0716150:CDS | 40.0% | |
| !!! | GGATTTTGAAACACTAACGG+AGG | + | chr5_1:9558104-9558123 | None:intergenic | 40.0% |
| TTCAGGCGAAATGTCAGATT+CGG | + | chr5_1:9558125-9558144 | None:intergenic | 40.0% | |
| AGATTCATTCACAAGCGAAC+CGG | - | chr5_1:9558169-9558188 | Msa0716150:CDS | 40.0% | |
| TTGAACCGAAACAACAAACC+GGG | - | chr5_1:9558194-9558213 | Msa0716150:CDS | 40.0% | |
| !! | TTGAACCCGGTTTGTTGTTT+CGG | + | chr5_1:9558202-9558221 | None:intergenic | 40.0% |
| ! | ATGAAGCTCTGATTTGAACC+CGG | + | chr5_1:9558215-9558234 | None:intergenic | 40.0% |
| ! | TTGTTTTCAGCTTCTCCATC+AGG | + | chr5_1:9558246-9558265 | None:intergenic | 40.0% |
| GATGGAGAAGCTGAAAACAA+TGG | - | chr5_1:9558246-9558265 | Msa0716150:CDS | 40.0% | |
| TGGATTGATCATCAAAACGC+CGG | - | chr5_1:9558297-9558316 | Msa0716150:CDS | 40.0% | |
| AAAGAGTTGCGTAACGGTTT+CGG | - | chr5_1:9558429-9558448 | Msa0716150:intron | 40.0% | |
| ! | GAAGATGCTTGATGATTCTG+CGG | - | chr5_1:9558510-9558529 | Msa0716150:intron | 40.0% |
| ! | TGATGAATGAAAGCTCTGGT+GGG | + | chr5_1:9558883-9558902 | None:intergenic | 40.0% |
| TATACAATGTCGTGTGCCTT+AGG | - | chr5_1:9559108-9559127 | Msa0716150:intron | 40.0% | |
| ATGCCATTACCTTCAACCTA+AGG | + | chr5_1:9559127-9559146 | None:intergenic | 40.0% | |
| !!! | AAGCAGACTTTGGAGTGTTT+TGG | + | chr5_1:9559463-9559482 | None:intergenic | 40.0% |
| !! | TCACATTTTGGGAGCTTACT+TGG | - | chr5_1:9559643-9559662 | Msa0716150:CDS | 40.0% |
| !! | CACATTTTGGGAGCTTACTT+GGG | - | chr5_1:9559644-9559663 | Msa0716150:CDS | 40.0% |
| ACATCCATGTACTTCATGAC+TGG | - | chr5_1:9559696-9559715 | Msa0716150:CDS | 40.0% | |
| ATACATTCTTCCTCAAGACC+GGG | - | chr5_1:9559721-9559740 | Msa0716150:CDS | 40.0% | |
| ! | GGGAAAGAACCTTCTTTTAG+AGG | - | chr5_1:9559741-9559760 | Msa0716150:CDS | 40.0% |
| ! | ATTTTCAGATGTGAGAGCAG+TGG | + | chr5_1:9559892-9559911 | None:intergenic | 40.0% |
| TTAAGAGAACGCTTGCACAA+CGG | - | chr5_1:9558020-9558039 | Msa0716150:CDS | 40.0% | |
| !!! | GGATTTTGAAACACTAACGG+AGG | + | chr5_1:9558104-9558123 | None:intergenic | 40.0% |
| TTCAGGCGAAATGTCAGATT+CGG | + | chr5_1:9558125-9558144 | None:intergenic | 40.0% | |
| AGATTCATTCACAAGCGAAC+CGG | - | chr5_1:9558169-9558188 | Msa0716150:CDS | 40.0% | |
| TTGAACCGAAACAACAAACC+GGG | - | chr5_1:9558194-9558213 | Msa0716150:CDS | 40.0% | |
| !! | TTGAACCCGGTTTGTTGTTT+CGG | + | chr5_1:9558202-9558221 | None:intergenic | 40.0% |
| ! | ATGAAGCTCTGATTTGAACC+CGG | + | chr5_1:9558215-9558234 | None:intergenic | 40.0% |
| ! | TTGTTTTCAGCTTCTCCATC+AGG | + | chr5_1:9558246-9558265 | None:intergenic | 40.0% |
| GATGGAGAAGCTGAAAACAA+TGG | - | chr5_1:9558246-9558265 | Msa0716150:CDS | 40.0% | |
| TGGATTGATCATCAAAACGC+CGG | - | chr5_1:9558297-9558316 | Msa0716150:CDS | 40.0% | |
| AAAGAGTTGCGTAACGGTTT+CGG | - | chr5_1:9558429-9558448 | Msa0716150:intron | 40.0% | |
| ! | GAAGATGCTTGATGATTCTG+CGG | - | chr5_1:9558510-9558529 | Msa0716150:intron | 40.0% |
| ! | TGATGAATGAAAGCTCTGGT+GGG | + | chr5_1:9558883-9558902 | None:intergenic | 40.0% |
| TATACAATGTCGTGTGCCTT+AGG | - | chr5_1:9559108-9559127 | Msa0716150:intron | 40.0% | |
| ATGCCATTACCTTCAACCTA+AGG | + | chr5_1:9559127-9559146 | None:intergenic | 40.0% | |
| !!! | AAGCAGACTTTGGAGTGTTT+TGG | + | chr5_1:9559463-9559482 | None:intergenic | 40.0% |
| !! | TCACATTTTGGGAGCTTACT+TGG | - | chr5_1:9559643-9559662 | Msa0716150:CDS | 40.0% |
| !! | CACATTTTGGGAGCTTACTT+GGG | - | chr5_1:9559644-9559663 | Msa0716150:CDS | 40.0% |
| ACATCCATGTACTTCATGAC+TGG | - | chr5_1:9559696-9559715 | Msa0716150:CDS | 40.0% | |
| ATACATTCTTCCTCAAGACC+GGG | - | chr5_1:9559721-9559740 | Msa0716150:CDS | 40.0% | |
| ! | GGGAAAGAACCTTCTTTTAG+AGG | - | chr5_1:9559741-9559760 | Msa0716150:CDS | 40.0% |
| ! | ATTTTCAGATGTGAGAGCAG+TGG | + | chr5_1:9559892-9559911 | None:intergenic | 40.0% |
| TTGAATGCTCCATTATCGCC+TGG | + | chr5_1:9558148-9558167 | None:intergenic | 45.0% | |
| GCTTCATCAACCAAACCTGA+TGG | - | chr5_1:9558228-9558247 | Msa0716150:CDS | 45.0% | |
| TTCAGCTTCTCCATCAGGTT+TGG | + | chr5_1:9558241-9558260 | None:intergenic | 45.0% | |
| TGGTAGGAATCGTATTCGGT+TGG | - | chr5_1:9558273-9558292 | Msa0716150:CDS | 45.0% | |
| AGGAATCGTATTCGGTTGGA+TGG | - | chr5_1:9558277-9558296 | Msa0716150:CDS | 45.0% | |
| ATTGATCATCAAAACGCCGG+CGG | - | chr5_1:9558300-9558319 | Msa0716150:CDS | 45.0% | |
| TCTGCGGCTGTGATTATCTT+AGG | - | chr5_1:9558526-9558545 | Msa0716150:intron | 45.0% | |
| ! | GTGATGAATGAAAGCTCTGG+TGG | + | chr5_1:9558884-9558903 | None:intergenic | 45.0% |
| GGTCCTAGATTCAATCAAGG+AGG | - | chr5_1:9559031-9559050 | Msa0716150:intron | 45.0% | |
| !! | GTGCCTTAGGTTGAAGGTAA+TGG | - | chr5_1:9559121-9559140 | Msa0716150:intron | 45.0% |
| GATACCTTTATTCCCGGTGT+AGG | + | chr5_1:9559486-9559505 | None:intergenic | 45.0% | |
| CTTGGTTGATCGTGAGCTTT+GGG | - | chr5_1:9559575-9559594 | Msa0716150:CDS | 45.0% | |
| TTGGTTGATCGTGAGCTTTG+GGG | - | chr5_1:9559576-9559595 | Msa0716150:CDS | 45.0% | |
| ! | GGGAGGTTTGGGTTTCATTA+TGG | - | chr5_1:9559596-9559615 | Msa0716150:CDS | 45.0% |
| GGAGCTTACTTGGGATGTAA+TGG | - | chr5_1:9559653-9559672 | Msa0716150:CDS | 45.0% | |
| GTGGAGGAATCAAACATAGG+AGG | + | chr5_1:9559873-9559892 | None:intergenic | 45.0% | |
| GCAGTGGAGGAATCAAACAT+AGG | + | chr5_1:9559876-9559895 | None:intergenic | 45.0% | |
| TTGAATGCTCCATTATCGCC+TGG | + | chr5_1:9558148-9558167 | None:intergenic | 45.0% | |
| GCTTCATCAACCAAACCTGA+TGG | - | chr5_1:9558228-9558247 | Msa0716150:CDS | 45.0% | |
| TTCAGCTTCTCCATCAGGTT+TGG | + | chr5_1:9558241-9558260 | None:intergenic | 45.0% | |
| TGGTAGGAATCGTATTCGGT+TGG | - | chr5_1:9558273-9558292 | Msa0716150:CDS | 45.0% | |
| AGGAATCGTATTCGGTTGGA+TGG | - | chr5_1:9558277-9558296 | Msa0716150:CDS | 45.0% | |
| ATTGATCATCAAAACGCCGG+CGG | - | chr5_1:9558300-9558319 | Msa0716150:CDS | 45.0% | |
| TCTGCGGCTGTGATTATCTT+AGG | - | chr5_1:9558526-9558545 | Msa0716150:intron | 45.0% | |
| ! | GTGATGAATGAAAGCTCTGG+TGG | + | chr5_1:9558884-9558903 | None:intergenic | 45.0% |
| GGTCCTAGATTCAATCAAGG+AGG | - | chr5_1:9559031-9559050 | Msa0716150:intron | 45.0% | |
| !! | GTGCCTTAGGTTGAAGGTAA+TGG | - | chr5_1:9559121-9559140 | Msa0716150:intron | 45.0% |
| GATACCTTTATTCCCGGTGT+AGG | + | chr5_1:9559486-9559505 | None:intergenic | 45.0% | |
| CTTGGTTGATCGTGAGCTTT+GGG | - | chr5_1:9559575-9559594 | Msa0716150:CDS | 45.0% | |
| TTGGTTGATCGTGAGCTTTG+GGG | - | chr5_1:9559576-9559595 | Msa0716150:CDS | 45.0% | |
| ! | GGGAGGTTTGGGTTTCATTA+TGG | - | chr5_1:9559596-9559615 | Msa0716150:CDS | 45.0% |
| GGAGCTTACTTGGGATGTAA+TGG | - | chr5_1:9559653-9559672 | Msa0716150:CDS | 45.0% | |
| GTGGAGGAATCAAACATAGG+AGG | + | chr5_1:9559873-9559892 | None:intergenic | 45.0% | |
| GCAGTGGAGGAATCAAACAT+AGG | + | chr5_1:9559876-9559895 | None:intergenic | 45.0% | |
| TCTGACATTTCGCCTGAACC+AGG | - | chr5_1:9558127-9558146 | Msa0716150:CDS | 50.0% | |
| GAAGGTGGCGCAATTAGAGA+TGG | - | chr5_1:9558381-9558400 | Msa0716150:CDS | 50.0% | |
| GGGGGTCCTAGATTCAATCA+AGG | - | chr5_1:9559028-9559047 | Msa0716150:intron | 50.0% | |
| !! | TGTCGTGTGCCTTAGGTTGA+AGG | - | chr5_1:9559115-9559134 | Msa0716150:intron | 50.0% |
| CCAAAGTCTGCTTCCTACAC+CGG | - | chr5_1:9559470-9559489 | Msa0716150:CDS | 50.0% | |
| CAAAGTCTGCTTCCTACACC+GGG | - | chr5_1:9559471-9559490 | Msa0716150:CDS | 50.0% | |
| GCTTCCTACACCGGGAATAA+AGG | - | chr5_1:9559479-9559498 | Msa0716150:CDS | 50.0% | |
| CTCACGATCAACCAAGGCTT+CGG | + | chr5_1:9559571-9559590 | None:intergenic | 50.0% | |
| CCAAAGCTCACGATCAACCA+AGG | + | chr5_1:9559577-9559596 | None:intergenic | 50.0% | |
| CCTTGGTTGATCGTGAGCTT+TGG | - | chr5_1:9559574-9559593 | Msa0716150:CDS | 50.0% | |
| AAGGTTCTTTCCCGGTCTTG+AGG | + | chr5_1:9559734-9559753 | None:intergenic | 50.0% | |
| TTCAGATGTGAGAGCAGTGG+AGG | + | chr5_1:9559889-9559908 | None:intergenic | 50.0% | |
| TCTGACATTTCGCCTGAACC+AGG | - | chr5_1:9558127-9558146 | Msa0716150:CDS | 50.0% | |
| GAAGGTGGCGCAATTAGAGA+TGG | - | chr5_1:9558381-9558400 | Msa0716150:CDS | 50.0% | |
| GGGGGTCCTAGATTCAATCA+AGG | - | chr5_1:9559028-9559047 | Msa0716150:intron | 50.0% | |
| !! | TGTCGTGTGCCTTAGGTTGA+AGG | - | chr5_1:9559115-9559134 | Msa0716150:intron | 50.0% |
| CCAAAGTCTGCTTCCTACAC+CGG | - | chr5_1:9559470-9559489 | Msa0716150:CDS | 50.0% | |
| CAAAGTCTGCTTCCTACACC+GGG | - | chr5_1:9559471-9559490 | Msa0716150:CDS | 50.0% | |
| GCTTCCTACACCGGGAATAA+AGG | - | chr5_1:9559479-9559498 | Msa0716150:CDS | 50.0% | |
| CTCACGATCAACCAAGGCTT+CGG | + | chr5_1:9559571-9559590 | None:intergenic | 50.0% | |
| CCAAAGCTCACGATCAACCA+AGG | + | chr5_1:9559577-9559596 | None:intergenic | 50.0% | |
| CCTTGGTTGATCGTGAGCTT+TGG | - | chr5_1:9559574-9559593 | Msa0716150:CDS | 50.0% | |
| AAGGTTCTTTCCCGGTCTTG+AGG | + | chr5_1:9559734-9559753 | None:intergenic | 50.0% | |
| TTCAGATGTGAGAGCAGTGG+AGG | + | chr5_1:9559889-9559908 | None:intergenic | 50.0% | |
| TCGCCTGAACCAGGCGATAA+TGG | - | chr5_1:9558136-9558155 | Msa0716150:CDS | 55.0% | |
| GCTCCATTATCGCCTGGTTC+AGG | + | chr5_1:9558142-9558161 | None:intergenic | 55.0% | |
| ACGCTAACACCGTCCTCCTT+CGG | + | chr5_1:9558340-9558359 | None:intergenic | 55.0% | |
| ! | AAGGAGGACGGTGTTAGCGT+CGG | - | chr5_1:9558340-9558359 | Msa0716150:CDS | 55.0% |
| CCGGTGTAGGAAGCAGACTT+TGG | + | chr5_1:9559473-9559492 | None:intergenic | 55.0% | |
| !! | GTTGATCGTGAGCTTTGGGG+AGG | - | chr5_1:9559579-9559598 | Msa0716150:CDS | 55.0% |
| !! | TCGTGAGCTTTGGGGAGGTT+TGG | - | chr5_1:9559584-9559603 | Msa0716150:CDS | 55.0% |
| !! | CGTGAGCTTTGGGGAGGTTT+GGG | - | chr5_1:9559585-9559604 | Msa0716150:CDS | 55.0% |
| TCGCCTGAACCAGGCGATAA+TGG | - | chr5_1:9558136-9558155 | Msa0716150:CDS | 55.0% | |
| GCTCCATTATCGCCTGGTTC+AGG | + | chr5_1:9558142-9558161 | None:intergenic | 55.0% | |
| ACGCTAACACCGTCCTCCTT+CGG | + | chr5_1:9558340-9558359 | None:intergenic | 55.0% | |
| ! | AAGGAGGACGGTGTTAGCGT+CGG | - | chr5_1:9558340-9558359 | Msa0716150:CDS | 55.0% |
| CCGGTGTAGGAAGCAGACTT+TGG | + | chr5_1:9559473-9559492 | None:intergenic | 55.0% | |
| !! | GTTGATCGTGAGCTTTGGGG+AGG | - | chr5_1:9559579-9559598 | Msa0716150:CDS | 55.0% |
| !! | TCGTGAGCTTTGGGGAGGTT+TGG | - | chr5_1:9559584-9559603 | Msa0716150:CDS | 55.0% |
| !! | CGTGAGCTTTGGGGAGGTTT+GGG | - | chr5_1:9559585-9559604 | Msa0716150:CDS | 55.0% |
| CAAAACGCCGGCGGAGAAAC+CGG | - | chr5_1:9558309-9558328 | Msa0716150:CDS | 60.0% | |
| GGCTTCGGCTTCTTCGTCGA+TGG | + | chr5_1:9559556-9559575 | None:intergenic | 60.0% | |
| CGACGAAGAAGCCGAAGCCT+TGG | - | chr5_1:9559557-9559576 | Msa0716150:CDS | 60.0% | |
| CAAAACGCCGGCGGAGAAAC+CGG | - | chr5_1:9558309-9558328 | Msa0716150:CDS | 60.0% | |
| GGCTTCGGCTTCTTCGTCGA+TGG | + | chr5_1:9559556-9559575 | None:intergenic | 60.0% | |
| CGACGAAGAAGCCGAAGCCT+TGG | - | chr5_1:9559557-9559576 | Msa0716150:CDS | 60.0% | |
| GGAGAAACCGGCGACGCCGA+AGG | - | chr5_1:9558321-9558340 | Msa0716150:CDS | 70.0% | |
| GAAACCGGCGACGCCGAAGG+AGG | - | chr5_1:9558324-9558343 | Msa0716150:CDS | 70.0% | |
| GGAGAAACCGGCGACGCCGA+AGG | - | chr5_1:9558321-9558340 | Msa0716150:CDS | 70.0% | |
| GAAACCGGCGACGCCGAAGG+AGG | - | chr5_1:9558324-9558343 | Msa0716150:CDS | 70.0% | |
| !! | GGCGTCGCCGGTTTCTCCGC+CGG | + | chr5_1:9558319-9558338 | None:intergenic | 75.0% |
| CCGTCCTCCTTCGGCGTCGC+CGG | + | chr5_1:9558331-9558350 | None:intergenic | 75.0% | |
| CCGGCGACGCCGAAGGAGGA+CGG | - | chr5_1:9558328-9558347 | Msa0716150:CDS | 75.0% | |
| !! | GGCGTCGCCGGTTTCTCCGC+CGG | + | chr5_1:9558319-9558338 | None:intergenic | 75.0% |
| CCGTCCTCCTTCGGCGTCGC+CGG | + | chr5_1:9558331-9558350 | None:intergenic | 75.0% | |
| CCGGCGACGCCGAAGGAGGA+CGG | - | chr5_1:9558328-9558347 | Msa0716150:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 9557954 | 9559926 | 9557954 | ID=Msa0716150;Name=Msa0716150 |
| chr5_1 | mRNA | 9557954 | 9559926 | 9557954 | ID=Msa0716150-mRNA-1;Parent=Msa0716150;Name=Msa0716150-mRNA-1;_AED=0.06;_eAED=0.06;_QI=44|0|0.5|1|1|1|2|0|349 |
| chr5_1 | exon | 9557954 | 9558424 | 9557954 | ID=Msa0716150-mRNA-1:exon:3822;Parent=Msa0716150-mRNA-1 |
| chr5_1 | exon | 9559304 | 9559926 | 9559304 | ID=Msa0716150-mRNA-1:exon:3821;Parent=Msa0716150-mRNA-1 |
| chr5_1 | five_prime_UTR | 9559883 | 9559926 | 9559883 | ID=Msa0716150-mRNA-1:five_prime_utr;Parent=Msa0716150-mRNA-1 |
| chr5_1 | CDS | 9559304 | 9559882 | 9559304 | ID=Msa0716150-mRNA-1:cds;Parent=Msa0716150-mRNA-1 |
| chr5_1 | CDS | 9557954 | 9558424 | 9557954 | ID=Msa0716150-mRNA-1:cds;Parent=Msa0716150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
