Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315210 | OIV96747.1 | 50.442 | 226 | 45 | 6 | 4 | 218 | 3 | 172 | 3.01e-52 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0220170 | Msa0315210 | 0.850678 | 1.453815e-60 | -8.615850e-47 |
| Msa0227790 | Msa0315210 | 0.820153 | 7.973256e-53 | -8.615850e-47 |
| Msa0261460 | Msa0315210 | 0.846658 | 1.891689e-59 | -8.615850e-47 |
| Msa0261480 | Msa0315210 | 0.864374 | 1.273608e-64 | -8.615850e-47 |
| Msa0315210 | Msa1422480 | 0.806105 | 9.667121e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315210 | MtrunA17_Chr2g0323631 | 92.771 | 83 | 6 | 0 | 1 | 83 | 1 | 83 | 3.31e-51 | 160 |
| Msa0315210 | MtrunA17_Chr2g0323631 | 36.691 | 139 | 33 | 4 | 81 | 218 | 7 | 91 | 1.77e-18 | 77.0 |
| Msa0315210 | MtrunA17_Chr2g0323571 | 92.771 | 83 | 6 | 0 | 1 | 83 | 1 | 83 | 2.02e-50 | 159 |
| Msa0315210 | MtrunA17_Chr2g0323571 | 37.500 | 136 | 30 | 3 | 84 | 218 | 10 | 91 | 7.48e-20 | 80.9 |
| Msa0315210 | MtrunA17_Chr2g0323671 | 91.566 | 83 | 7 | 0 | 1 | 83 | 1 | 83 | 8.43e-50 | 157 |
| Msa0315210 | MtrunA17_Chr2g0323671 | 37.500 | 136 | 30 | 3 | 84 | 218 | 10 | 91 | 1.34e-19 | 80.1 |
| Msa0315210 | MtrunA17_Chr2g0323601 | 49.630 | 135 | 19 | 2 | 84 | 218 | 7 | 92 | 9.78e-33 | 114 |
| Msa0315210 | MtrunA17_Chr2g0323601 | 57.143 | 84 | 30 | 3 | 5 | 83 | 2 | 84 | 7.44e-20 | 80.9 |
| Msa0315210 | MtrunA17_Chr2g0323651 | 50.000 | 136 | 16 | 3 | 84 | 218 | 7 | 91 | 5.66e-32 | 112 |
| Msa0315210 | MtrunA17_Chr2g0323651 | 57.831 | 83 | 30 | 2 | 5 | 83 | 2 | 83 | 3.97e-19 | 79.0 |
| Msa0315210 | MtrunA17_Chr2g0323711 | 50.000 | 136 | 16 | 3 | 84 | 218 | 7 | 91 | 5.66e-32 | 112 |
| Msa0315210 | MtrunA17_Chr2g0323711 | 57.831 | 83 | 30 | 2 | 5 | 83 | 2 | 83 | 3.97e-19 | 79.0 |
| Msa0315210 | MtrunA17_Chr4g0022611 | 70.130 | 77 | 20 | 2 | 9 | 83 | 6 | 81 | 6.83e-27 | 99.0 |
| Msa0315210 | MtrunA17_Chr4g0022611 | 44.853 | 136 | 21 | 4 | 84 | 218 | 7 | 89 | 4.59e-21 | 84.0 |
| Msa0315210 | MtrunA17_Chr2g0323681 | 93.478 | 46 | 3 | 0 | 84 | 129 | 7 | 52 | 4.59e-24 | 91.7 |
| Msa0315210 | MtrunA17_Chr2g0323681 | 51.136 | 88 | 33 | 2 | 5 | 83 | 2 | 88 | 1.65e-17 | 74.7 |
| Msa0315210 | MtrunA17_Chr2g0323701 | 61.538 | 78 | 25 | 3 | 9 | 83 | 6 | 81 | 1.44e-23 | 90.1 |
| Msa0315210 | MtrunA17_Chr2g0323701 | 37.313 | 134 | 32 | 4 | 85 | 218 | 8 | 89 | 2.84e-19 | 79.3 |
| Msa0315210 | MtrunA17_Chr2g0323661 | 64.384 | 73 | 20 | 3 | 11 | 83 | 10 | 76 | 4.21e-22 | 86.3 |
| Msa0315210 | MtrunA17_Chr2g0323661 | 54.386 | 57 | 26 | 0 | 85 | 141 | 10 | 66 | 2.31e-13 | 63.5 |
| Msa0315210 | MtrunA17_Chr2g0323721 | 57.692 | 78 | 28 | 3 | 9 | 83 | 6 | 81 | 3.24e-21 | 84.3 |
| Msa0315210 | MtrunA17_Chr2g0323721 | 38.806 | 134 | 30 | 4 | 85 | 218 | 8 | 89 | 9.81e-20 | 80.5 |
| Msa0315210 | MtrunA17_Chr2g0323611 | 60.274 | 73 | 23 | 3 | 11 | 83 | 10 | 76 | 2.33e-20 | 81.6 |
| Msa0315210 | MtrunA17_Chr2g0323611 | 64.286 | 42 | 15 | 0 | 85 | 126 | 10 | 51 | 1.51e-12 | 61.2 |
| Msa0315210 | MtrunA17_Chr2g0318611 | 55.696 | 79 | 32 | 1 | 5 | 83 | 2 | 77 | 3.82e-20 | 81.3 |
| Msa0315210 | MtrunA17_Chr2g0318611 | 63.830 | 47 | 16 | 1 | 84 | 129 | 7 | 53 | 9.53e-16 | 69.7 |
| Msa0315210 | MtrunA17_Chr2g0318641 | 52.500 | 80 | 31 | 3 | 5 | 83 | 35 | 108 | 2.03e-18 | 77.8 |
| Msa0315210 | MtrunA17_Chr2g0318601 | 50.633 | 79 | 36 | 1 | 5 | 83 | 2 | 77 | 2.71e-18 | 76.6 |
| Msa0315210 | MtrunA17_Chr2g0318601 | 61.702 | 47 | 17 | 1 | 84 | 129 | 7 | 53 | 1.81e-15 | 69.3 |
| Msa0315210 | MtrunA17_Chr2g0323551 | 48.750 | 80 | 39 | 2 | 5 | 83 | 2 | 80 | 1.15e-14 | 67.0 |
| Msa0315210 | MtrunA17_Chr2g0323551 | 47.619 | 84 | 18 | 2 | 161 | 218 | 5 | 88 | 6.27e-14 | 65.1 |
| Msa0315210 | MtrunA17_Chr2g0318591 | 53.191 | 47 | 22 | 0 | 5 | 51 | 2 | 48 | 8.59e-13 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315210 | AT4G10265.1 | 62.025 | 79 | 25 | 1 | 5 | 83 | 2 | 75 | 7.23e-27 | 99.0 |
| Msa0315210 | AT4G10265.1 | 56.897 | 58 | 24 | 1 | 85 | 141 | 8 | 65 | 4.01e-16 | 71.2 |
| Msa0315210 | AT4G10270.1 | 62.963 | 81 | 28 | 1 | 5 | 83 | 2 | 82 | 8.66e-25 | 94.0 |
| Msa0315210 | AT4G10270.1 | 59.574 | 47 | 18 | 1 | 84 | 129 | 7 | 53 | 2.95e-13 | 63.5 |
Find 49 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGTTGCTACCAAATTTA+AGG | 0.083204 | 2_4:-11411134 | Msa0315210:CDS |
| CTTCTTGTCATCCTTAAATT+TGG | 0.215497 | 2_4:+11411123 | None:intergenic |
| TCATCACTCATGAGTTCTTT+TGG | 0.230370 | 2_4:+11407097 | None:intergenic |
| CATCATGTTCTTGAGCATAT+TGG | 0.265049 | 2_4:-11407041 | Msa0315210:CDS |
| CAAAGACTCCTCTGCCTGTT+TGG | 0.289223 | 2_4:+11411099 | None:intergenic |
| ATCATGTTCTTGAGCATATT+GGG | 0.310940 | 2_4:-11407040 | Msa0315210:CDS |
| AGCAATCAGAGGAATCTTTA+AGG | 0.315897 | 2_4:-11407280 | Msa0315210:CDS |
| AGTTATGTACTTGAGTTGTT+GGG | 0.380679 | 2_4:-11407255 | Msa0315210:CDS |
| TTCATCTTCTTCTTCTCCTA+TGG | 0.383759 | 2_4:-11407330 | Msa0315210:intron |
| AAGTTATGTACTTGAGTTGT+TGG | 0.395020 | 2_4:-11407256 | Msa0315210:CDS |
| TTTGGAATTGTTGAAGAAGT+AGG | 0.403030 | 2_4:+11407115 | None:intergenic |
| CAACGAAAGCTCCTCTTAGT+TGG | 0.414374 | 2_4:+11407229 | None:intergenic |
| TTCTAATTCTAGACAACAAA+AGG | 0.422761 | 2_4:-11407306 | Msa0315210:intron |
| AAGATCAAGCTGGTATTTGT+AGG | 0.423985 | 2_4:-11411243 | Msa0315210:CDS |
| GGATGACAAGAAGGCCAAAC+AGG | 0.439731 | 2_4:-11411113 | Msa0315210:CDS |
| ATGGTCCTCAATGATTCCTC+TGG | 0.440370 | 2_4:+11407061 | None:intergenic |
| TTCGTTGTTGCAACAAGAGT+TGG | 0.440941 | 2_4:-11407213 | Msa0315210:CDS |
| AACAGGCAGAGGAGTCTTTG+AGG | 0.455186 | 2_4:-11411096 | Msa0315210:CDS |
| AACGAAAGCTCCTCTTAGTT+GGG | 0.489304 | 2_4:+11407230 | None:intergenic |
| AGCAGAGCATGGGTAGCTGC+AGG | 0.497606 | 2_4:-11407473 | Msa0315210:intron |
| CAAGAAGGCCAAACAGGCAG+AGG | 0.502891 | 2_4:-11411107 | Msa0315210:CDS |
| GTGGAAGCATTGAAAGATCA+AGG | 0.506795 | 2_4:-11407437 | Msa0315210:CDS |
| TTTGAACTGACTTTAGGGTA+TGG | 0.511934 | 2_4:+11407399 | None:intergenic |
| GGCTGCAAGTGTCGGAGTTG+TGG | 0.523789 | 2_4:-11411275 | Msa0315210:CDS |
| CAAATTTAAGGATGACAAGA+AGG | 0.525172 | 2_4:-11411122 | Msa0315210:CDS |
| TGGAATGGTGGATACATTGA+AGG | 0.527502 | 2_4:-11407193 | Msa0315210:CDS |
| GGATACATTGAAGGATCAAA+GGG | 0.532436 | 2_4:-11407184 | Msa0315210:intron |
| AGCAACAAGCAAAGCATGGA+TGG | 0.538950 | 2_4:-11411299 | Msa0315210:CDS |
| CTTGAGACATTGATCTAACA+CGG | 0.543910 | 2_4:+11411179 | None:intergenic |
| TGGATACATTGAAGGATCAA+AGG | 0.546018 | 2_4:-11407185 | Msa0315210:CDS |
| GTTATGTACTTGAGTTGTTG+GGG | 0.552188 | 2_4:-11407254 | Msa0315210:CDS |
| TGCAGGCAGTGTTGCAGTTG+TGG | 0.558647 | 2_4:-11407456 | Msa0315210:CDS |
| CAACAGCAACAAGCAAAGCA+TGG | 0.569709 | 2_4:-11411303 | Msa0315210:CDS |
| TCATGAGTGATGAGGAGAAG+AGG | 0.572849 | 2_4:-11407087 | Msa0315210:CDS |
| TTGTTGGGGTCCCAACTAAG+AGG | 0.574227 | 2_4:-11407240 | Msa0315210:CDS |
| GAGTTCAACAAGCAGAGCAT+GGG | 0.590239 | 2_4:-11407483 | Msa0315210:intron |
| ATCAAGCTGGTATTTGTAGG+TGG | 0.610975 | 2_4:-11411240 | Msa0315210:CDS |
| AAGATCAAGGAATATGCAGA+TGG | 0.613727 | 2_4:-11407424 | Msa0315210:CDS |
| CAATATGCTCAAGAACATGA+TGG | 0.616449 | 2_4:+11407042 | None:intergenic |
| AAAAGAACTCATGAGTGATG+AGG | 0.622390 | 2_4:-11407095 | Msa0315210:CDS |
| TGCAAGTGTCGGAGTTGTGG+AGG | 0.626439 | 2_4:-11411272 | Msa0315210:CDS |
| TGTTGCAACAAGAGTTGGAA+TGG | 0.626577 | 2_4:-11407208 | Msa0315210:CDS |
| TGGATGGTGGCTGCAAGTGT+CGG | 0.632050 | 2_4:-11411283 | Msa0315210:CDS |
| AACAAGCAAAGCATGGATGG+TGG | 0.650577 | 2_4:-11411296 | Msa0315210:CDS |
| ACAAAAGGCAAAGCAATCAG+AGG | 0.651467 | 2_4:-11407291 | Msa0315210:CDS |
| GAGGCTTTGAAAGATCAAGC+TGG | 0.655112 | 2_4:-11411253 | Msa0315210:CDS |
| GGAAACCAGAGGAATCATTG+AGG | 0.659136 | 2_4:-11407066 | Msa0315210:CDS |
| TGCAACAAGAGTTGGAATGG+TGG | 0.675291 | 2_4:-11407205 | Msa0315210:CDS |
| TGAGGAGAAGAGGAAACCAG+AGG | 0.687418 | 2_4:-11407077 | Msa0315210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATGGATAAAAAAATTTTA+CGG | + | chr2_4:11407449-11407468 | None:intergenic | 10.0% |
| !! | AAAATTTATCACACAAATTA+TGG | + | chr2_4:11407624-11407643 | None:intergenic | 15.0% |
| !! | AAACCTTCATATATAATATA+TGG | + | chr2_4:11408318-11408337 | None:intergenic | 15.0% |
| !!! | TGTTGTTATTCTATTTAATT+AGG | - | chr2_4:11408884-11408903 | Msa0315210:intron | 15.0% |
| !! | GCAAAAAGAAAATAAAAATT+AGG | - | chr2_4:11409233-11409252 | Msa0315210:intron | 15.0% |
| !!! | CAAGTTATTATAATTTGTTT+AGG | + | chr2_4:11410269-11410288 | None:intergenic | 15.0% |
| !! | ACAAGTTAAAATAGTTAAAA+AGG | - | chr2_4:11410368-11410387 | Msa0315210:intron | 15.0% |
| !! | TAATAAGATTAGATGAATAT+TGG | - | chr2_4:11410507-11410526 | Msa0315210:intron | 15.0% |
| !! | TATGTACAAATGAATCAATT+GGG | + | chr2_4:11407297-11407316 | None:intergenic | 20.0% |
| !! | GTAAAGTTTGTAATATCAAA+CGG | - | chr2_4:11407341-11407360 | Msa0315210:CDS | 20.0% |
| !! | TTCAAAATTTGAGGAAAATT+TGG | + | chr2_4:11407665-11407684 | None:intergenic | 20.0% |
| !!! | CGTTTGTTTCTTTTTTAAAA+AGG | - | chr2_4:11407934-11407953 | Msa0315210:intron | 20.0% |
| !!! | TTGTTGATAGTACATTTAAT+TGG | - | chr2_4:11408074-11408093 | Msa0315210:intron | 20.0% |
| !!! | TAAATTTGATAATGTGAAGT+TGG | - | chr2_4:11408165-11408184 | Msa0315210:intron | 20.0% |
| !!! | TATTTAATTAGGTGATTTGT+TGG | - | chr2_4:11408895-11408914 | Msa0315210:intron | 20.0% |
| !!! | TCTTAGCATTTTAAGAAAAA+AGG | + | chr2_4:11409110-11409129 | None:intergenic | 20.0% |
| !! | ATATTAATAGTGAAAACATG+TGG | + | chr2_4:11409797-11409816 | None:intergenic | 20.0% |
| !!! | TGGCTTTTAAAAAAAATCAT+TGG | - | chr2_4:11410527-11410546 | Msa0315210:intron | 20.0% |
| !! | ATTTGTTGCTACCAAATTTA+AGG | - | chr2_4:11407206-11407225 | Msa0315210:CDS | 25.0% |
| ! | CTATGTACAAATGAATCAAT+TGG | + | chr2_4:11407298-11407317 | None:intergenic | 25.0% |
| ! | TCACTCAAATTCAAAATTTG+AGG | + | chr2_4:11407674-11407693 | None:intergenic | 25.0% |
| ! | GAAAGATGCTTAATTATTGT+TGG | - | chr2_4:11407708-11407727 | Msa0315210:intron | 25.0% |
| ! | ATGATATAGTTGTTGATCAA+CGG | - | chr2_4:11407786-11407805 | Msa0315210:intron | 25.0% |
| !! | ATACATTGGTTACTGAATTA+AGG | - | chr2_4:11407834-11407853 | Msa0315210:intron | 25.0% |
| !! | TACATTGGTTACTGAATTAA+GGG | - | chr2_4:11407835-11407854 | Msa0315210:intron | 25.0% |
| ! | TAAAAAGGTGAATGAATTGA+AGG | - | chr2_4:11407949-11407968 | Msa0315210:intron | 25.0% |
| !! | AAGAGTTAATTTGGTATCAT+TGG | + | chr2_4:11408245-11408264 | None:intergenic | 25.0% |
| ! | TGGCCATATATTATATATGA+AGG | - | chr2_4:11408312-11408331 | Msa0315210:intron | 25.0% |
| !! | ACATGATTGTGTAAATTTTG+TGG | + | chr2_4:11409195-11409214 | None:intergenic | 25.0% |
| !! | TTATTTTCTTTTTGCTGCAT+GGG | + | chr2_4:11409228-11409247 | None:intergenic | 25.0% |
| !!! | TTTATTTTCTTTTTGCTGCA+TGG | + | chr2_4:11409229-11409248 | None:intergenic | 25.0% |
| ! | TTCATTAACTGAAAAGGTTA+AGG | + | chr2_4:11409358-11409377 | None:intergenic | 25.0% |
| ! | TCTTCATTCATTAACTGAAA+AGG | + | chr2_4:11409364-11409383 | None:intergenic | 25.0% |
| ! | TTTCAGTTAATGAATGAAGA+AGG | - | chr2_4:11409364-11409383 | Msa0315210:intron | 25.0% |
| !!! | ATTTTATTTAGACTCGTGTT+TGG | + | chr2_4:11409511-11409530 | None:intergenic | 25.0% |
| ! | AACTAATTAACAACAGTGTT+GGG | - | chr2_4:11409541-11409560 | Msa0315210:intron | 25.0% |
| !!! | TTCGTAACTTTTGAAGAATT+CGG | + | chr2_4:11409897-11409916 | None:intergenic | 25.0% |
| ! | TCATATAGATTTCTGTACAA+AGG | + | chr2_4:11410012-11410031 | None:intergenic | 25.0% |
| ! | TCTATATGATGTTAAAAGCT+AGG | - | chr2_4:11410023-11410042 | Msa0315210:intron | 25.0% |
| !!! | TTACTTTGGAGTCATATTTT+TGG | + | chr2_4:11410148-11410167 | None:intergenic | 25.0% |
| ! | AGATAAGTTTAATGTGTCAA+TGG | - | chr2_4:11410578-11410597 | Msa0315210:intron | 25.0% |
| !! | TTTGAGATGCTAAAGTTAAT+AGG | + | chr2_4:11410695-11410714 | None:intergenic | 25.0% |
| ! | TTCTAATTCTAGACAACAAA+AGG | - | chr2_4:11411034-11411053 | Msa0315210:intron | 25.0% |
| ! | TTGATCTAACACGGTTTTTA+AGG | + | chr2_4:11407155-11407174 | None:intergenic | 30.0% |
| CTTCTTGTCATCCTTAAATT+TGG | + | chr2_4:11407220-11407239 | None:intergenic | 30.0% | |
| CAAATTTAAGGATGACAAGA+AGG | - | chr2_4:11407218-11407237 | Msa0315210:CDS | 30.0% | |
| AACGGCAATATTATTCAATG+AGG | - | chr2_4:11407359-11407378 | Msa0315210:CDS | 30.0% | |
| ! | TACCTGATCAGTATTGAATT+TGG | - | chr2_4:11407418-11407437 | Msa0315210:CDS | 30.0% |
| TACCAAATTCAATACTGATC+AGG | + | chr2_4:11407423-11407442 | None:intergenic | 30.0% | |
| ! | CAAGCTGTGATAAGTTTTTA+TGG | + | chr2_4:11407466-11407485 | None:intergenic | 30.0% |
| TGATCAACAACTATATCATC+TGG | + | chr2_4:11407785-11407804 | None:intergenic | 30.0% | |
| ! | ACATTGGTTACTGAATTAAG+GGG | - | chr2_4:11407836-11407855 | Msa0315210:intron | 30.0% |
| TGAAAATGGGCATATTCAAA+AGG | - | chr2_4:11407910-11407929 | Msa0315210:intron | 30.0% | |
| TCTAAGAATGACATGTAATG+AGG | + | chr2_4:11408116-11408135 | None:intergenic | 30.0% | |
| TGATACCAAATTAACTCTTG+AGG | - | chr2_4:11408246-11408265 | Msa0315210:intron | 30.0% | |
| CCACTAAAAATAAATTCAGC+TGG | + | chr2_4:11408295-11408314 | None:intergenic | 30.0% | |
| !!! | CCAGCTGAATTTATTTTTAG+TGG | - | chr2_4:11408292-11408311 | Msa0315210:intron | 30.0% |
| AAAAACAAAAAAGAGCAGCA+AGG | - | chr2_4:11408362-11408381 | Msa0315210:intron | 30.0% | |
| AAAACAAAAAAGAGCAGCAA+GGG | - | chr2_4:11408363-11408382 | Msa0315210:intron | 30.0% | |
| GAAAAGAAAACTAAAGCGTA+GGG | - | chr2_4:11408385-11408404 | Msa0315210:intron | 30.0% | |
| GATGACTTCATGACAAAATT+AGG | + | chr2_4:11408501-11408520 | None:intergenic | 30.0% | |
| TTCCTTCTTTGATTGTATGA+TGG | - | chr2_4:11408529-11408548 | Msa0315210:intron | 30.0% | |
| !! | TATGATGGACAAAGTAGTTT+CGG | - | chr2_4:11408544-11408563 | Msa0315210:intron | 30.0% |
| ! | TGCAATATGTCATTTGAATG+AGG | - | chr2_4:11408738-11408757 | Msa0315210:intron | 30.0% |
| ! | GCAATATGTCATTTGAATGA+GGG | - | chr2_4:11408739-11408758 | Msa0315210:intron | 30.0% |
| TCACAACCTTTGTAACATAA+GGG | + | chr2_4:11409084-11409103 | None:intergenic | 30.0% | |
| ACTGCATTTAAACACATCAA+AGG | - | chr2_4:11409258-11409277 | Msa0315210:intron | 30.0% | |
| AGGTTAAGGTTTAGATGTAT+TGG | + | chr2_4:11409344-11409363 | None:intergenic | 30.0% | |
| GAACTAATTAACAACAGTGT+TGG | - | chr2_4:11409540-11409559 | Msa0315210:intron | 30.0% | |
| GGAAGAGATAATTAAATACC+TGG | - | chr2_4:11409593-11409612 | Msa0315210:intron | 30.0% | |
| ! | TGAGAGGATTTTCAATCATA+AGG | + | chr2_4:11409982-11410001 | None:intergenic | 30.0% |
| ! | AAAAGCTAGGCGATAATTTT+TGG | - | chr2_4:11410036-11410055 | Msa0315210:intron | 30.0% |
| ACATTTCATCACAGTAACAA+CGG | + | chr2_4:11410109-11410128 | None:intergenic | 30.0% | |
| GACTTTATTACAGGTTACTT+TGG | + | chr2_4:11410162-11410181 | None:intergenic | 30.0% | |
| !! | AGTTTTATGATTGTTGCAAG+AGG | - | chr2_4:11410319-11410338 | Msa0315210:intron | 30.0% |
| !! | GTTAGTTGTTTTCTAGACTA+TGG | + | chr2_4:11410623-11410642 | None:intergenic | 30.0% |
| TGAAGGAGGTTGTTATATAT+AGG | + | chr2_4:11410722-11410741 | None:intergenic | 30.0% | |
| !!! | ATGTATCTTGTGTTTTTGGT+TGG | + | chr2_4:11410759-11410778 | None:intergenic | 30.0% |
| ! | GTGTATGTATCTTGTGTTTT+TGG | + | chr2_4:11410763-11410782 | None:intergenic | 30.0% |
| !! | GTGATTTTGAACTGACTTTA+GGG | + | chr2_4:11410949-11410968 | None:intergenic | 30.0% |
| ! | TGTCTAGAATTAGAAACCAT+AGG | + | chr2_4:11411029-11411048 | None:intergenic | 30.0% |
| ! | AAGTTATGTACTTGAGTTGT+TGG | - | chr2_4:11411084-11411103 | Msa0315210:intron | 30.0% |
| ! | AGTTATGTACTTGAGTTGTT+GGG | - | chr2_4:11411085-11411104 | Msa0315210:intron | 30.0% |
| ! | TTTGGAATTGTTGAAGAAGT+AGG | + | chr2_4:11411228-11411247 | None:intergenic | 30.0% |
| ATCATGTTCTTGAGCATATT+GGG | - | chr2_4:11411300-11411319 | Msa0315210:CDS | 30.0% | |
| AAGATCAAGCTGGTATTTGT+AGG | - | chr2_4:11407097-11407116 | Msa0315210:CDS | 35.0% | |
| CTTGAGACATTGATCTAACA+CGG | + | chr2_4:11407164-11407183 | None:intergenic | 35.0% | |
| ! | TGTCATGTACTTGAGTTGTT+GGG | - | chr2_4:11407269-11407288 | Msa0315210:CDS | 35.0% |
| CACTGAGAAACATAGATATG+TGG | + | chr2_4:11407396-11407415 | None:intergenic | 35.0% | |
| GTGTATTACGATCGAATAGA+TGG | - | chr2_4:11407556-11407575 | Msa0315210:intron | 35.0% | |
| ACCCTATTACACAATAGATC+TGG | - | chr2_4:11407809-11407828 | Msa0315210:intron | 35.0% | |
| CCCAGATCTATTGTGTAATA+GGG | + | chr2_4:11407813-11407832 | None:intergenic | 35.0% | |
| CCCTATTACACAATAGATCT+GGG | - | chr2_4:11407810-11407829 | Msa0315210:intron | 35.0% | |
| CCTATTACACAATAGATCTG+GGG | - | chr2_4:11407811-11407830 | Msa0315210:intron | 35.0% | |
| ! | TACATCAGTAGTGCTGAAAA+TGG | - | chr2_4:11407896-11407915 | Msa0315210:intron | 35.0% |
| ! | ACATCAGTAGTGCTGAAAAT+GGG | - | chr2_4:11407897-11407916 | Msa0315210:intron | 35.0% |
| AATTCAGATGAAGATCGTGT+TGG | - | chr2_4:11408001-11408020 | Msa0315210:intron | 35.0% | |
| GAATGTTCCTTAAAGTGTGT+TGG | - | chr2_4:11408193-11408212 | Msa0315210:intron | 35.0% | |
| CACATCCTCAAGAGTTAATT+TGG | + | chr2_4:11408254-11408273 | None:intergenic | 35.0% | |
| GGAAAAGAAAACTAAAGCGT+AGG | - | chr2_4:11408384-11408403 | Msa0315210:intron | 35.0% | |
| TTGTCATGAAGTCATCACTA+TGG | - | chr2_4:11408505-11408524 | Msa0315210:intron | 35.0% | |
| GTCCATCATACAATCAAAGA+AGG | + | chr2_4:11408534-11408553 | None:intergenic | 35.0% | |
| !! | ATGATGGACAAAGTAGTTTC+GGG | - | chr2_4:11408545-11408564 | Msa0315210:intron | 35.0% |
| CTCTCAATCAATCTCATCTT+GGG | + | chr2_4:11408633-11408652 | None:intergenic | 35.0% | |
| TCTCTCAATCAATCTCATCT+TGG | + | chr2_4:11408634-11408653 | None:intergenic | 35.0% | |
| AGATGAGATTGATTGAGAGA+AGG | - | chr2_4:11408634-11408653 | Msa0315210:intron | 35.0% | |
| GATGAGATTGATTGAGAGAA+GGG | - | chr2_4:11408635-11408654 | Msa0315210:intron | 35.0% | |
| TGTTCCATTCTCAATGTTGA+TGG | + | chr2_4:11408856-11408875 | None:intergenic | 35.0% | |
| CTCACAACCTTTGTAACATA+AGG | + | chr2_4:11409085-11409104 | None:intergenic | 35.0% | |
| TTGATTGTGATTGTCTCACT+TGG | + | chr2_4:11409293-11409312 | None:intergenic | 35.0% | |
| CACACGAATTATGTGACTAT+GGG | + | chr2_4:11409394-11409413 | None:intergenic | 35.0% | |
| TCACACGAATTATGTGACTA+TGG | + | chr2_4:11409395-11409414 | None:intergenic | 35.0% | |
| CACATAATTCGTGTGATTTG+AGG | - | chr2_4:11409399-11409418 | Msa0315210:intron | 35.0% | |
| TTATTTAGACTCGTGTTTGG+TGG | + | chr2_4:11409508-11409527 | None:intergenic | 35.0% | |
| AATTATCTCTTCCCAACAGT+GGG | + | chr2_4:11409586-11409605 | None:intergenic | 35.0% | |
| TAATTATCTCTTCCCAACAG+TGG | + | chr2_4:11409587-11409606 | None:intergenic | 35.0% | |
| !!! | GTTTTTTGATAGTCCCACAT+CGG | + | chr2_4:11409727-11409746 | None:intergenic | 35.0% |
| !! | TTTTGAAGAATTCGGTACGT+GGG | + | chr2_4:11409889-11409908 | None:intergenic | 35.0% |
| TAGATTTCTGTACAAAGGAG+AGG | + | chr2_4:11410007-11410026 | None:intergenic | 35.0% | |
| ATCATCTCCTTCAGTTTGAT+GGG | + | chr2_4:11410075-11410094 | None:intergenic | 35.0% | |
| !!! | AGTCATATTTTTGGCTGGTT+AGG | + | chr2_4:11410139-11410158 | None:intergenic | 35.0% |
| !!! | TTTGGAGTCATATTTTTGGC+TGG | + | chr2_4:11410144-11410163 | None:intergenic | 35.0% |
| TTTCAACGCGACTTTATTAC+AGG | + | chr2_4:11410171-11410190 | None:intergenic | 35.0% | |
| TTTCAAACAACGACATTCAG+TGG | - | chr2_4:11410209-11410228 | Msa0315210:intron | 35.0% | |
| TATATAGAAGACAGTGACAG+TGG | + | chr2_4:11410483-11410502 | None:intergenic | 35.0% | |
| AAAGAATAGGAAAATACCGG+GGG | + | chr2_4:11410658-11410677 | None:intergenic | 35.0% | |
| CAAAGAATAGGAAAATACCG+GGG | + | chr2_4:11410659-11410678 | None:intergenic | 35.0% | |
| CCAAAGAATAGGAAAATACC+GGG | + | chr2_4:11410660-11410679 | None:intergenic | 35.0% | |
| CCCAAAGAATAGGAAAATAC+CGG | + | chr2_4:11410661-11410680 | None:intergenic | 35.0% | |
| ! | CCGGTATTTTCCTATTCTTT+GGG | - | chr2_4:11410658-11410677 | Msa0315210:intron | 35.0% |
| AAGATCAAGGAATATGCAGA+TGG | - | chr2_4:11410916-11410935 | Msa0315210:intron | 35.0% | |
| !! | TTTGAACTGACTTTAGGGTA+TGG | + | chr2_4:11410944-11410963 | None:intergenic | 35.0% |
| !! | CGTGATTTTGAACTGACTTT+AGG | + | chr2_4:11410950-11410969 | None:intergenic | 35.0% |
| TTCATCTTCTTCTTCTCCTA+TGG | - | chr2_4:11411010-11411029 | Msa0315210:intron | 35.0% | |
| AGCAATCAGAGGAATCTTTA+AGG | - | chr2_4:11411060-11411079 | Msa0315210:intron | 35.0% | |
| ! | GTTATGTACTTGAGTTGTTG+GGG | - | chr2_4:11411086-11411105 | Msa0315210:intron | 35.0% |
| TGGATACATTGAAGGATCAA+AGG | - | chr2_4:11411155-11411174 | Msa0315210:CDS | 35.0% | |
| GGATACATTGAAGGATCAAA+GGG | - | chr2_4:11411156-11411175 | Msa0315210:CDS | 35.0% | |
| ! | TCATCACTCATGAGTTCTTT+TGG | + | chr2_4:11411246-11411265 | None:intergenic | 35.0% |
| AAAAGAACTCATGAGTGATG+AGG | - | chr2_4:11411245-11411264 | Msa0315210:CDS | 35.0% | |
| CAATATGCTCAAGAACATGA+TGG | + | chr2_4:11411301-11411320 | None:intergenic | 35.0% | |
| CATCATGTTCTTGAGCATAT+TGG | - | chr2_4:11411299-11411318 | Msa0315210:CDS | 35.0% | |
| ATCAAGCTGGTATTTGTAGG+TGG | - | chr2_4:11407100-11407119 | Msa0315210:CDS | 40.0% | |
| ! | CTGTCATGTACTTGAGTTGT+TGG | - | chr2_4:11407268-11407287 | Msa0315210:CDS | 40.0% |
| ! | GTCATGTACTTGAGTTGTTG+GGG | - | chr2_4:11407270-11407289 | Msa0315210:CDS | 40.0% |
| AATTTGAGCTGAGAGCTTAC+AGG | - | chr2_4:11407504-11407523 | Msa0315210:intron | 40.0% | |
| CCCCAGATCTATTGTGTAAT+AGG | + | chr2_4:11407814-11407833 | None:intergenic | 40.0% | |
| CAATAGATCTGGGGATACAT+TGG | - | chr2_4:11407820-11407839 | Msa0315210:intron | 40.0% | |
| !! | TCCTTAAAGTGTGTTGGCTT+TGG | - | chr2_4:11408199-11408218 | Msa0315210:intron | 40.0% |
| TCCAAAGCCAACACACTTTA+AGG | + | chr2_4:11408203-11408222 | None:intergenic | 40.0% | |
| !! | TGGCTTTGGAGAGGTTAATT+TGG | - | chr2_4:11408213-11408232 | Msa0315210:intron | 40.0% |
| GATGACAAACAGATCATCTG+CGG | - | chr2_4:11408470-11408489 | Msa0315210:intron | 40.0% | |
| TCAGGACATCAAAGACCTTA+TGG | + | chr2_4:11408574-11408593 | None:intergenic | 40.0% | |
| CATTTACGCTGTTCTTGTTC+AGG | + | chr2_4:11408592-11408611 | None:intergenic | 40.0% | |
| GAACAAGAACAGCGTAAATG+TGG | - | chr2_4:11408592-11408611 | Msa0315210:intron | 40.0% | |
| !! | TACCCATGTTGATAGCCATA+TGG | - | chr2_4:11408685-11408704 | Msa0315210:intron | 40.0% |
| CACCATATGGCTATCAACAT+GGG | + | chr2_4:11408690-11408709 | None:intergenic | 40.0% | |
| TGCATATGCATGTATCTCAC+AGG | + | chr2_4:11408780-11408799 | None:intergenic | 40.0% | |
| ! | AATGTTGATGGAGCTGCAAT+GGG | + | chr2_4:11408844-11408863 | None:intergenic | 40.0% |
| AGCTCCATCAACATTGAGAA+TGG | - | chr2_4:11408849-11408868 | Msa0315210:intron | 40.0% | |
| GTAACCAAGTCTCGTTGTTA+AGG | - | chr2_4:11408995-11409014 | Msa0315210:intron | 40.0% | |
| CTTTGTAACATAAGGGCTCT+TGG | + | chr2_4:11409077-11409096 | None:intergenic | 40.0% | |
| CAAGAGCCCTTATGTTACAA+AGG | - | chr2_4:11409075-11409094 | Msa0315210:intron | 40.0% | |
| TTCTCTGATACACATTGTGC+TGG | + | chr2_4:11409162-11409181 | None:intergenic | 40.0% | |
| ATTGTGATTGTCTCACTTGG+AGG | + | chr2_4:11409290-11409309 | None:intergenic | 40.0% | |
| GTTGGGTAGTGATAAATCAC+TGG | - | chr2_4:11409558-11409577 | Msa0315210:intron | 40.0% | |
| ATTATCTCTTCCCAACAGTG+GGG | + | chr2_4:11409585-11409604 | None:intergenic | 40.0% | |
| TGCATATGGAAAGGAAGAAG+TGG | + | chr2_4:11409696-11409715 | None:intergenic | 40.0% | |
| GACAGTTCTTGCATATGGAA+AGG | + | chr2_4:11409705-11409724 | None:intergenic | 40.0% | |
| ATACTTAGTCGGTACGCTAT+GGG | + | chr2_4:11409862-11409881 | None:intergenic | 40.0% | |
| TATACTTAGTCGGTACGCTA+TGG | + | chr2_4:11409863-11409882 | None:intergenic | 40.0% | |
| TTTGAAGAATTCGGTACGTG+GGG | + | chr2_4:11409888-11409907 | None:intergenic | 40.0% | |
| !! | CTTTTGAAGAATTCGGTACG+TGG | + | chr2_4:11409890-11409909 | None:intergenic | 40.0% |
| AATTGCGAACCATGTGACTA+TGG | - | chr2_4:11409951-11409970 | Msa0315210:intron | 40.0% | |
| ATTGCGAACCATGTGACTAT+GGG | - | chr2_4:11409952-11409971 | Msa0315210:intron | 40.0% | |
| GATCATCTCCTTCAGTTTGA+TGG | + | chr2_4:11410076-11410095 | None:intergenic | 40.0% | |
| CAGTAACAACGGTAACATTC+TGG | + | chr2_4:11410098-11410117 | None:intergenic | 40.0% | |
| ! | CGAAGTGTTCACAGTTTACA+TGG | - | chr2_4:11410344-11410363 | Msa0315210:intron | 40.0% |
| ! | CCCGGTATTTTCCTATTCTT+TGG | - | chr2_4:11410657-11410676 | Msa0315210:intron | 40.0% |
| TGATGAAACGCCCAAAGAAT+AGG | + | chr2_4:11410671-11410690 | None:intergenic | 40.0% | |
| TTGATGAAGAAGAGTGAAGG+AGG | + | chr2_4:11410736-11410755 | None:intergenic | 40.0% | |
| !! | TGGTTGATGAAGAAGAGTGA+AGG | + | chr2_4:11410739-11410758 | None:intergenic | 40.0% |
| !! | GTGGAAGCATTGAAAGATCA+AGG | - | chr2_4:11410903-11410922 | Msa0315210:intron | 40.0% |
| ACAAAAGGCAAAGCAATCAG+AGG | - | chr2_4:11411049-11411068 | Msa0315210:intron | 40.0% | |
| AACGAAAGCTCCTCTTAGTT+GGG | + | chr2_4:11411113-11411132 | None:intergenic | 40.0% | |
| TTCGTTGTTGCAACAAGAGT+TGG | - | chr2_4:11411127-11411146 | Msa0315210:CDS | 40.0% | |
| TGTTGCAACAAGAGTTGGAA+TGG | - | chr2_4:11411132-11411151 | Msa0315210:CDS | 40.0% | |
| !! | TGGAATGGTGGATACATTGA+AGG | - | chr2_4:11411147-11411166 | Msa0315210:CDS | 40.0% |
| AGAAGTAGGAGATAGCTTCT+GGG | + | chr2_4:11411214-11411233 | None:intergenic | 40.0% | |
| AAGAAGTAGGAGATAGCTTC+TGG | + | chr2_4:11411215-11411234 | None:intergenic | 40.0% | |
| CAACAGCAACAAGCAAAGCA+TGG | - | chr2_4:11407037-11407056 | Msa0315210:CDS | 45.0% | |
| AGCAACAAGCAAAGCATGGA+TGG | - | chr2_4:11407041-11407060 | Msa0315210:CDS | 45.0% | |
| AACAAGCAAAGCATGGATGG+TGG | - | chr2_4:11407044-11407063 | Msa0315210:CDS | 45.0% | |
| !! | GAGGCTTTGAAAGATCAAGC+TGG | - | chr2_4:11407087-11407106 | Msa0315210:CDS | 45.0% |
| !! | AAAGTGTGTTGGCTTTGGAG+AGG | - | chr2_4:11408204-11408223 | Msa0315210:intron | 45.0% |
| ! | TCTTCTCAGGATGGATTCGA+TGG | + | chr2_4:11408421-11408440 | None:intergenic | 45.0% |
| ATCGAATCCATCCTGAGAAG+AGG | - | chr2_4:11408420-11408439 | Msa0315210:intron | 45.0% | |
| AATCCATCCTGAGAAGAGGA+AGG | - | chr2_4:11408424-11408443 | Msa0315210:intron | 45.0% | |
| TGTCATCCATTCTTCTCCAC+CGG | + | chr2_4:11408457-11408476 | None:intergenic | 45.0% | |
| ! | AGTAGTTTCGGGTAGCCATA+AGG | - | chr2_4:11408556-11408575 | Msa0315210:intron | 45.0% |
| ACAGCGTAAATGTGGTACTG+CGG | - | chr2_4:11408600-11408619 | Msa0315210:intron | 45.0% | |
| CCACCATATGGCTATCAACA+TGG | + | chr2_4:11408691-11408710 | None:intergenic | 45.0% | |
| !! | CCATGTTGATAGCCATATGG+TGG | - | chr2_4:11408688-11408707 | Msa0315210:intron | 45.0% |
| GTACACCATCAAAACCTGCT+CGG | - | chr2_4:11408810-11408829 | Msa0315210:intron | 45.0% | |
| ! | ATGTTGATGGAGCTGCAATG+GGG | + | chr2_4:11408843-11408862 | None:intergenic | 45.0% |
| ! | CAATGTTGATGGAGCTGCAA+TGG | + | chr2_4:11408845-11408864 | None:intergenic | 45.0% |
| TCTCTCGTGTTGAAAGCTCA+AGG | - | chr2_4:11408927-11408946 | Msa0315210:intron | 45.0% | |
| TGTGCCTTAACAACGAGACT+TGG | + | chr2_4:11409002-11409021 | None:intergenic | 45.0% | |
| GATATCTCTAAACCCACTCG+AGG | - | chr2_4:11409031-11409050 | Msa0315210:intron | 45.0% | |
| TGGTGGAATATCTTCCTTGC+CGG | + | chr2_4:11409057-11409076 | None:intergenic | 45.0% | |
| TGTAACATAAGGGCTCTTGG+TGG | + | chr2_4:11409074-11409093 | None:intergenic | 45.0% | |
| TGATACACATTGTGCTGGAG+GGG | + | chr2_4:11409157-11409176 | None:intergenic | 45.0% | |
| CTGATACACATTGTGCTGGA+GGG | + | chr2_4:11409158-11409177 | None:intergenic | 45.0% | |
| TCTGATACACATTGTGCTGG+AGG | + | chr2_4:11409159-11409178 | None:intergenic | 45.0% | |
| ! | TTTTTGCTGCATGGGCAACA+TGG | + | chr2_4:11409220-11409239 | None:intergenic | 45.0% |
| ! | CCCAGTTCTGACGAATTCTT+GGG | + | chr2_4:11409468-11409487 | None:intergenic | 45.0% |
| CCCAAGAATTCGTCAGAACT+GGG | - | chr2_4:11409465-11409484 | Msa0315210:intron | 45.0% | |
| CCAAGAATTCGTCAGAACTG+GGG | - | chr2_4:11409466-11409485 | Msa0315210:intron | 45.0% | |
| !!! | GTTTGGTGGTGTGGTTTTTG+CGG | + | chr2_4:11409494-11409513 | None:intergenic | 45.0% |
| CATCGGACAGTTCTTGCATA+TGG | + | chr2_4:11409710-11409729 | None:intergenic | 45.0% | |
| TATGCAAGAACTGTCCGATG+TGG | - | chr2_4:11409710-11409729 | Msa0315210:intron | 45.0% | |
| ATGCAAGAACTGTCCGATGT+GGG | - | chr2_4:11409711-11409730 | Msa0315210:intron | 45.0% | |
| TTGAAGAATTCGGTACGTGG+GGG | + | chr2_4:11409887-11409906 | None:intergenic | 45.0% | |
| AAGGTTGACCCATAGTCACA+TGG | + | chr2_4:11409963-11409982 | None:intergenic | 45.0% | |
| GTACAAAGGAGAGGAATGAG+AGG | + | chr2_4:11409998-11410017 | None:intergenic | 45.0% | |
| TAACAATAGCTTTCAGCCCC+CGG | - | chr2_4:11410639-11410658 | Msa0315210:intron | 45.0% | |
| TGAGTTCAACAAGCAGAGCA+TGG | - | chr2_4:11410856-11410875 | Msa0315210:intron | 45.0% | |
| GAGTTCAACAAGCAGAGCAT+GGG | - | chr2_4:11410857-11410876 | Msa0315210:intron | 45.0% | |
| CAACGAAAGCTCCTCTTAGT+TGG | + | chr2_4:11411114-11411133 | None:intergenic | 45.0% | |
| TGCAACAAGAGTTGGAATGG+TGG | - | chr2_4:11411135-11411154 | Msa0315210:CDS | 45.0% | |
| TCATGAGTGATGAGGAGAAG+AGG | - | chr2_4:11411253-11411272 | Msa0315210:CDS | 45.0% | |
| GGAAACCAGAGGAATCATTG+AGG | - | chr2_4:11411274-11411293 | Msa0315210:CDS | 45.0% | |
| ATGGTCCTCAATGATTCCTC+TGG | + | chr2_4:11411282-11411301 | None:intergenic | 45.0% | |
| GGATGACAAGAAGGCCAAAC+AGG | - | chr2_4:11407227-11407246 | Msa0315210:CDS | 50.0% | |
| CAAAGACTCCTCTGCCTGTT+TGG | + | chr2_4:11407244-11407263 | None:intergenic | 50.0% | |
| AACAGGCAGAGGAGTCTTTG+AGG | - | chr2_4:11407244-11407263 | Msa0315210:CDS | 50.0% | |
| TTGACCTCCTTCCTCTTCTC+AGG | + | chr2_4:11408434-11408453 | None:intergenic | 50.0% | |
| AGAAGAGGAAGGAGGTCAAC+CGG | - | chr2_4:11408435-11408454 | Msa0315210:intron | 50.0% | |
| GAGCTCACAACTACTCACTG+CGG | + | chr2_4:11408714-11408733 | None:intergenic | 50.0% | |
| !! | CCAATCCGAGCAGGTTTTGA+TGG | + | chr2_4:11408818-11408837 | None:intergenic | 50.0% |
| CCATCAAAACCTGCTCGGAT+TGG | - | chr2_4:11408815-11408834 | Msa0315210:intron | 50.0% | |
| CTCGTGTTGAAAGCTCAAGG+TGG | - | chr2_4:11408930-11408949 | Msa0315210:intron | 50.0% | |
| GTGTTGAAAGCTCAAGGTGG+TGG | - | chr2_4:11408933-11408952 | Msa0315210:intron | 50.0% | |
| ! | ATTTGAGGTGAACCGCGAAC+TGG | - | chr2_4:11409414-11409433 | Msa0315210:intron | 50.0% |
| TTGGGCGAATTGTAGCGAAC+CGG | + | chr2_4:11409450-11409469 | None:intergenic | 50.0% | |
| GCCCAAGAATTCGTCAGAAC+TGG | - | chr2_4:11409464-11409483 | Msa0315210:intron | 50.0% | |
| ! | CCCCAGTTCTGACGAATTCT+TGG | + | chr2_4:11409469-11409488 | None:intergenic | 50.0% |
| !! | TAGACTCGTGTTTGGTGGTG+TGG | + | chr2_4:11409503-11409522 | None:intergenic | 50.0% |
| AAATCACTGGTCCCCACTGT+TGG | - | chr2_4:11409571-11409590 | Msa0315210:intron | 50.0% | |
| AATCACTGGTCCCCACTGTT+GGG | - | chr2_4:11409572-11409591 | Msa0315210:intron | 50.0% | |
| TCCCACCAAGTAACCATGCT+AGG | - | chr2_4:11409616-11409635 | Msa0315210:intron | 50.0% | |
| GCCTAGCATGGTTACTTGGT+GGG | + | chr2_4:11409620-11409639 | None:intergenic | 50.0% | |
| ! | ACGTGGGGGGTATACTTAGT+CGG | + | chr2_4:11409873-11409892 | None:intergenic | 50.0% |
| TGAAGAATTCGGTACGTGGG+GGG | + | chr2_4:11409886-11409905 | None:intergenic | 50.0% | |
| ACATGGTTCGCAATTCGCTC+CGG | + | chr2_4:11409946-11409965 | None:intergenic | 50.0% | |
| !! | CTTCAGTTTGATGGGCTAGG+TGG | + | chr2_4:11410067-11410086 | None:intergenic | 50.0% |
| CACCTAGCCCATCAAACTGA+AGG | - | chr2_4:11410065-11410084 | Msa0315210:intron | 50.0% | |
| !! | CTCCTTCAGTTTGATGGGCT+AGG | + | chr2_4:11410070-11410089 | None:intergenic | 50.0% |
| AGACAGTGACAGTGGCAAGA+TGG | + | chr2_4:11410475-11410494 | None:intergenic | 50.0% | |
| TTGTTGGGGTCCCAACTAAG+AGG | - | chr2_4:11411100-11411119 | Msa0315210:CDS | 50.0% | |
| TAGCTTCTGGGCATGAGCTA+AGG | + | chr2_4:11411202-11411221 | None:intergenic | 50.0% | |
| TGAGGAGAAGAGGAAACCAG+AGG | - | chr2_4:11411263-11411282 | Msa0315210:CDS | 50.0% | |
| ! | TGGATGGTGGCTGCAAGTGT+CGG | - | chr2_4:11407057-11407076 | Msa0315210:CDS | 55.0% |
| !! | TGCAAGTGTCGGAGTTGTGG+AGG | - | chr2_4:11407068-11407087 | Msa0315210:CDS | 55.0% |
| CAAGAAGGCCAAACAGGCAG+AGG | - | chr2_4:11407233-11407252 | Msa0315210:CDS | 55.0% | |
| CCTCCTTCCTCTTCTCAGGA+TGG | + | chr2_4:11408430-11408449 | None:intergenic | 55.0% | |
| CCATCCTGAGAAGAGGAAGG+AGG | - | chr2_4:11408427-11408446 | Msa0315210:intron | 55.0% | |
| GGTCAACCGGTGGAGAAGAA+TGG | - | chr2_4:11408448-11408467 | Msa0315210:intron | 55.0% | |
| TACTCACTGCGGCCACCATA+TGG | + | chr2_4:11408703-11408722 | None:intergenic | 55.0% | |
| AATGGGGTTCCAATCCGAGC+AGG | + | chr2_4:11408827-11408846 | None:intergenic | 55.0% | |
| TCTCTAAACCCACTCGAGGC+CGG | - | chr2_4:11409035-11409054 | Msa0315210:intron | 55.0% | |
| GGTACGTACGAACCAGTTCG+CGG | + | chr2_4:11409429-11409448 | None:intergenic | 55.0% | |
| !! | GCGAACTGGTTCGTACGTAC+CGG | - | chr2_4:11409428-11409447 | Msa0315210:intron | 55.0% |
| ! | CATGGTTACTTGGTGGGACC+AGG | + | chr2_4:11409614-11409633 | None:intergenic | 55.0% |
| CGCCTAGCATGGTTACTTGG+TGG | + | chr2_4:11409621-11409640 | None:intergenic | 55.0% | |
| ACGCGCCTAGCATGGTTACT+TGG | + | chr2_4:11409624-11409643 | None:intergenic | 55.0% | |
| AAGTAACCATGCTAGGCGCG+TGG | - | chr2_4:11409623-11409642 | Msa0315210:intron | 55.0% | |
| AGTAACCATGCTAGGCGCGT+GGG | - | chr2_4:11409624-11409643 | Msa0315210:intron | 55.0% | |
| ATTCGCTCCGGTACGTGGTA+CGG | + | chr2_4:11409934-11409953 | None:intergenic | 55.0% | |
| TGCAGGCAGTGTTGCAGTTG+TGG | - | chr2_4:11410884-11410903 | Msa0315210:intron | 55.0% | |
| !! | GGCTGCAAGTGTCGGAGTTG+TGG | - | chr2_4:11407065-11407084 | Msa0315210:CDS | 60.0% |
| AGAGGAAGGAGGTCAACCGG+TGG | - | chr2_4:11408438-11408457 | Msa0315210:intron | 60.0% | |
| CAAAACCCACGCGCCTAGCA+TGG | + | chr2_4:11409632-11409651 | None:intergenic | 60.0% | |
| ! | CATGCTAGGCGCGTGGGTTT+TGG | - | chr2_4:11409630-11409649 | Msa0315210:intron | 60.0% |
| TCCGGTACGTGGTACGGGTT+CGG | + | chr2_4:11409928-11409947 | None:intergenic | 60.0% | |
| TTCGCTCCGGTACGTGGTAC+GGG | + | chr2_4:11409933-11409952 | None:intergenic | 60.0% | |
| TCGCAATTCGCTCCGGTACG+TGG | + | chr2_4:11409939-11409958 | None:intergenic | 60.0% | |
| AGCAGAGCATGGGTAGCTGC+AGG | - | chr2_4:11410867-11410886 | Msa0315210:intron | 60.0% | |
| AAACCCACTCGAGGCCGGCA+AGG | - | chr2_4:11409040-11409059 | Msa0315210:intron | 65.0% | |
| CTTCCTTGCCGGCCTCGAGT+GGG | + | chr2_4:11409046-11409065 | None:intergenic | 65.0% | |
| TCTTCCTTGCCGGCCTCGAG+TGG | + | chr2_4:11409047-11409066 | None:intergenic | 65.0% | |
| CCGGTACGTGGTACGGGTTC+GGG | + | chr2_4:11409927-11409946 | None:intergenic | 65.0% | |
| CCCGAACCCGTACCACGTAC+CGG | - | chr2_4:11409924-11409943 | Msa0315210:intron | 65.0% | |
| GTGGTACGGGTTCGGGCACG+CGG | + | chr2_4:11409920-11409939 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 11407027 | 11411335 | 11407027 | ID=Msa0315210;Name=Msa0315210 |
| chr2_4 | mRNA | 11407027 | 11411335 | 11407027 | ID=Msa0315210-mRNA-1;Parent=Msa0315210;Name=Msa0315210-mRNA-1;_AED=0.06;_eAED=0.16;_QI=0|0|0|1|0|0.25|4|0|219 |
| chr2_4 | exon | 11411088 | 11411335 | 11411088 | ID=Msa0315210-mRNA-1:exon:4415;Parent=Msa0315210-mRNA-1 |
| chr2_4 | exon | 11407331 | 11407490 | 11407331 | ID=Msa0315210-mRNA-1:exon:4414;Parent=Msa0315210-mRNA-1 |
| chr2_4 | exon | 11407185 | 11407316 | 11407185 | ID=Msa0315210-mRNA-1:exon:4413;Parent=Msa0315210-mRNA-1 |
| chr2_4 | exon | 11407027 | 11407146 | 11407027 | ID=Msa0315210-mRNA-1:exon:4412;Parent=Msa0315210-mRNA-1 |
| chr2_4 | CDS | 11411088 | 11411335 | 11411088 | ID=Msa0315210-mRNA-1:cds;Parent=Msa0315210-mRNA-1 |
| chr2_4 | CDS | 11407331 | 11407490 | 11407331 | ID=Msa0315210-mRNA-1:cds;Parent=Msa0315210-mRNA-1 |
| chr2_4 | CDS | 11407185 | 11407316 | 11407185 | ID=Msa0315210-mRNA-1:cds;Parent=Msa0315210-mRNA-1 |
| chr2_4 | CDS | 11407027 | 11407146 | 11407027 | ID=Msa0315210-mRNA-1:cds;Parent=Msa0315210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
