Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0261480 | KAG6738966.1 | 52.265 | 287 | 83 | 10 | 1 | 237 | 1 | 283 | 1.78e-73 | 238 |
Msa0261480 | KAG6738966.1 | 58.582 | 268 | 78 | 8 | 1 | 239 | 111 | 374 | 1.20e-87 | 274 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0261480 | A0A5J5AAH5 | 54.595 | 185 | 54 | 6 | 1 | 159 | 1 | 181 | 4.45e-48 | 166 |
Msa0261480 | A0A5J5AAH5 | 61.364 | 88 | 26 | 2 | 1 | 82 | 102 | 187 | 8.72e-24 | 103 |
Msa0261480 | A0A5J5AAH5 | 61.376 | 189 | 41 | 5 | 82 | 240 | 3 | 189 | 1.47e-66 | 213 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0035740 | Msa0261480 | 0.829512 | 4.937638e-55 | -8.615850e-47 |
Msa0039750 | Msa0261480 | 0.809086 | 2.250896e-50 | -8.615850e-47 |
Msa0161960 | Msa0261480 | 0.835066 | 2.082657e-56 | -8.615850e-47 |
Msa0220160 | Msa0261480 | 0.853614 | 2.126386e-61 | -8.615850e-47 |
Msa0220170 | Msa0261480 | 0.854705 | 1.029950e-61 | -8.615850e-47 |
Msa0227790 | Msa0261480 | 0.924044 | 1.190414e-89 | -8.615850e-47 |
Msa0261460 | Msa0261480 | 0.923578 | 2.207363e-89 | -8.615850e-47 |
Msa0261480 | Msa0298400 | 0.801725 | 7.862355e-49 | -8.615850e-47 |
Msa0261480 | Msa0299100 | 0.809690 | 1.670450e-50 | -8.615850e-47 |
Msa0261480 | Msa0304980 | 0.844077 | 9.453379e-59 | -8.615850e-47 |
Msa0261480 | Msa0315210 | 0.864374 | 1.273608e-64 | -8.615850e-47 |
Msa0261480 | Msa0342590 | 0.848687 | 5.228997e-60 | -8.615850e-47 |
Msa0261480 | Msa0383930 | 0.846059 | 2.754504e-59 | -8.615850e-47 |
Msa0261480 | Msa0384590 | 0.849333 | 3.459866e-60 | -8.615850e-47 |
Msa0261480 | Msa0434370 | 0.831491 | 1.619459e-55 | -8.615850e-47 |
Msa0261480 | Msa0434660 | 0.842138 | 3.105421e-58 | -8.615850e-47 |
Msa0261480 | Msa0478130 | 0.835939 | 1.252643e-56 | -8.615850e-47 |
Msa0261480 | Msa0478190 | 0.853883 | 1.780369e-61 | -8.615850e-47 |
Msa0261480 | Msa0478430 | 0.801206 | 1.004280e-48 | -8.615850e-47 |
Msa0261480 | Msa0522540 | 0.842473 | 2.530641e-58 | -8.615850e-47 |
Msa0261480 | Msa0541880 | 0.813653 | 2.295894e-51 | -8.615850e-47 |
Msa0261480 | Msa0541940 | 0.816164 | 6.369489e-52 | -8.615850e-47 |
Msa0261480 | Msa0685610 | 0.810578 | 1.075182e-50 | -8.615850e-47 |
Msa0261480 | Msa0921860 | 0.804280 | 2.329866e-49 | -8.615850e-47 |
Msa0261480 | Msa0958830 | 0.820603 | 6.284658e-53 | -8.615850e-47 |
Msa0261480 | Msa0964020 | 0.830482 | 2.864449e-55 | -8.615850e-47 |
Msa0261480 | Msa0970040 | 0.821942 | 3.087863e-53 | -8.615850e-47 |
Msa0261480 | Msa0970100 | 0.803613 | 3.207107e-49 | -8.615850e-47 |
Msa0261480 | Msa1026970 | 0.839754 | 1.311400e-57 | -8.615850e-47 |
Msa0261480 | Msa1111900 | 0.861470 | 1.003250e-63 | -8.615850e-47 |
Msa0261480 | Msa1133760 | 0.838731 | 2.416126e-57 | -8.615850e-47 |
Msa0261480 | Msa1154310 | 0.823582 | 1.281926e-53 | -8.615850e-47 |
Msa0261480 | Msa1184680 | 0.801579 | 8.423017e-49 | -8.615850e-47 |
Msa0261480 | Msa1197720 | 0.817488 | 3.212856e-52 | -8.615850e-47 |
Msa0261480 | Msa1251410 | 0.804080 | 2.564925e-49 | -8.615850e-47 |
Msa0261480 | Msa1331570 | -0.800910 | 1.154597e-48 | -8.615850e-47 |
Msa0261480 | Msa1372000 | 0.803700 | 3.076223e-49 | -8.615850e-47 |
Msa0261480 | Msa1396110 | 0.831460 | 1.648858e-55 | -8.615850e-47 |
Msa0261480 | Msa1429810 | 0.809303 | 2.022380e-50 | -8.615850e-47 |
Msa0261480 | Msa1431260 | 0.855512 | 6.002204e-62 | -8.615850e-47 |
Msa0261480 | Msa1434300 | 0.823700 | 1.203047e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0261480 | MtrunA17_Chr2g0323661 | 95.122 | 82 | 4 | 0 | 1 | 82 | 1 | 82 | 1.87e-51 | 162 |
Msa0261480 | MtrunA17_Chr2g0323661 | 60.000 | 80 | 27 | 1 | 161 | 240 | 10 | 84 | 7.00e-26 | 96.7 |
Msa0261480 | MtrunA17_Chr2g0323661 | 63.014 | 73 | 21 | 3 | 87 | 159 | 10 | 76 | 4.00e-20 | 81.6 |
Msa0261480 | MtrunA17_Chr2g0323611 | 90.361 | 83 | 8 | 0 | 1 | 83 | 1 | 83 | 4.37e-49 | 155 |
Msa0261480 | MtrunA17_Chr2g0323611 | 58.750 | 80 | 28 | 1 | 161 | 240 | 10 | 84 | 8.10e-25 | 94.0 |
Msa0261480 | MtrunA17_Chr2g0323611 | 61.644 | 73 | 22 | 3 | 87 | 159 | 10 | 76 | 7.47e-20 | 80.9 |
Msa0261480 | MtrunA17_Chr2g0323571 | 93.590 | 78 | 5 | 0 | 82 | 159 | 6 | 83 | 3.64e-46 | 149 |
Msa0261480 | MtrunA17_Chr2g0323571 | 65.854 | 82 | 27 | 1 | 160 | 240 | 10 | 91 | 3.41e-30 | 108 |
Msa0261480 | MtrunA17_Chr2g0323571 | 65.432 | 81 | 22 | 3 | 10 | 84 | 11 | 91 | 7.75e-27 | 99.4 |
Msa0261480 | MtrunA17_Chr2g0323631 | 92.308 | 78 | 6 | 0 | 82 | 159 | 6 | 83 | 5.27e-46 | 148 |
Msa0261480 | MtrunA17_Chr2g0323631 | 61.176 | 85 | 32 | 1 | 157 | 240 | 7 | 91 | 3.44e-29 | 105 |
Msa0261480 | MtrunA17_Chr2g0323631 | 67.089 | 79 | 20 | 3 | 10 | 82 | 11 | 89 | 2.31e-26 | 98.2 |
Msa0261480 | MtrunA17_Chr2g0323671 | 92.308 | 78 | 6 | 0 | 82 | 159 | 6 | 83 | 1.12e-45 | 147 |
Msa0261480 | MtrunA17_Chr2g0323671 | 65.854 | 82 | 27 | 1 | 160 | 240 | 10 | 91 | 4.60e-30 | 107 |
Msa0261480 | MtrunA17_Chr2g0323671 | 65.432 | 81 | 22 | 3 | 10 | 84 | 11 | 91 | 1.71e-26 | 98.6 |
Msa0261480 | MtrunA17_Chr2g0323601 | 88.372 | 86 | 5 | 2 | 160 | 240 | 7 | 92 | 2.38e-42 | 139 |
Msa0261480 | MtrunA17_Chr2g0323601 | 52.128 | 94 | 33 | 2 | 1 | 84 | 1 | 92 | 2.38e-23 | 90.5 |
Msa0261480 | MtrunA17_Chr2g0323601 | 57.831 | 83 | 29 | 3 | 82 | 159 | 3 | 84 | 7.26e-19 | 78.6 |
Msa0261480 | MtrunA17_Chr2g0323651 | 83.529 | 85 | 10 | 1 | 160 | 240 | 7 | 91 | 9.29e-40 | 132 |
Msa0261480 | MtrunA17_Chr2g0323651 | 54.839 | 93 | 31 | 2 | 1 | 84 | 1 | 91 | 1.06e-23 | 91.3 |
Msa0261480 | MtrunA17_Chr2g0323651 | 58.537 | 82 | 29 | 2 | 82 | 159 | 3 | 83 | 4.81e-18 | 76.6 |
Msa0261480 | MtrunA17_Chr2g0323711 | 83.529 | 85 | 10 | 1 | 160 | 240 | 7 | 91 | 9.29e-40 | 132 |
Msa0261480 | MtrunA17_Chr2g0323711 | 54.839 | 93 | 31 | 2 | 1 | 84 | 1 | 91 | 1.06e-23 | 91.3 |
Msa0261480 | MtrunA17_Chr2g0323711 | 58.537 | 82 | 29 | 2 | 82 | 159 | 3 | 83 | 4.81e-18 | 76.6 |
Msa0261480 | MtrunA17_Chr2g0323681 | 76.667 | 90 | 12 | 1 | 160 | 240 | 7 | 96 | 3.35e-36 | 123 |
Msa0261480 | MtrunA17_Chr2g0323681 | 51.020 | 98 | 32 | 2 | 1 | 84 | 1 | 96 | 7.03e-22 | 86.7 |
Msa0261480 | MtrunA17_Chr2g0323681 | 51.724 | 87 | 32 | 2 | 82 | 159 | 3 | 88 | 9.94e-17 | 73.2 |
Msa0261480 | MtrunA17_Chr4g0022611 | 74.699 | 83 | 19 | 2 | 160 | 240 | 7 | 89 | 4.15e-32 | 112 |
Msa0261480 | MtrunA17_Chr4g0022611 | 60.440 | 91 | 27 | 3 | 1 | 84 | 1 | 89 | 1.01e-27 | 101 |
Msa0261480 | MtrunA17_Chr4g0022611 | 68.831 | 77 | 21 | 2 | 85 | 159 | 6 | 81 | 1.33e-25 | 96.3 |
Msa0261480 | MtrunA17_Chr2g0323701 | 67.073 | 82 | 25 | 1 | 161 | 240 | 8 | 89 | 5.02e-32 | 112 |
Msa0261480 | MtrunA17_Chr2g0323701 | 62.500 | 80 | 23 | 1 | 10 | 82 | 8 | 87 | 6.86e-29 | 104 |
Msa0261480 | MtrunA17_Chr2g0323701 | 62.821 | 78 | 24 | 3 | 85 | 159 | 6 | 81 | 8.70e-23 | 89.0 |
Msa0261480 | MtrunA17_Chr2g0323721 | 65.854 | 82 | 26 | 1 | 161 | 240 | 8 | 89 | 1.68e-30 | 108 |
Msa0261480 | MtrunA17_Chr2g0323721 | 59.551 | 89 | 27 | 3 | 1 | 82 | 1 | 87 | 1.19e-26 | 99.0 |
Msa0261480 | MtrunA17_Chr2g0323721 | 60.526 | 76 | 25 | 3 | 87 | 159 | 8 | 81 | 1.01e-20 | 83.6 |
Msa0261480 | MtrunA17_Chr2g0318611 | 62.195 | 82 | 25 | 3 | 160 | 239 | 7 | 84 | 6.29e-23 | 89.4 |
Msa0261480 | MtrunA17_Chr2g0318611 | 56.410 | 78 | 31 | 1 | 82 | 159 | 3 | 77 | 7.14e-19 | 78.6 |
Msa0261480 | MtrunA17_Chr2g0318611 | 49.438 | 89 | 40 | 3 | 1 | 86 | 1 | 87 | 1.61e-17 | 75.1 |
Msa0261480 | MtrunA17_Chr2g0318601 | 58.025 | 81 | 30 | 2 | 160 | 239 | 7 | 84 | 1.49e-22 | 88.2 |
Msa0261480 | MtrunA17_Chr2g0318601 | 46.939 | 98 | 29 | 4 | 1 | 86 | 1 | 87 | 5.75e-18 | 76.3 |
Msa0261480 | MtrunA17_Chr2g0318601 | 51.282 | 78 | 35 | 1 | 82 | 159 | 3 | 77 | 3.32e-17 | 74.3 |
Msa0261480 | MtrunA17_Chr2g0323551 | 48.780 | 82 | 41 | 1 | 160 | 240 | 7 | 88 | 5.78e-19 | 79.0 |
Msa0261480 | MtrunA17_Chr2g0323551 | 54.545 | 77 | 29 | 2 | 12 | 82 | 10 | 86 | 2.20e-18 | 77.4 |
Msa0261480 | MtrunA17_Chr2g0323551 | 52.500 | 80 | 34 | 4 | 82 | 159 | 3 | 80 | 3.33e-14 | 66.2 |
Msa0261480 | MtrunA17_Chr2g0318641 | 49.451 | 91 | 39 | 3 | 70 | 159 | 24 | 108 | 6.09e-19 | 79.7 |
Msa0261480 | MtrunA17_Chr2g0318641 | 51.163 | 86 | 32 | 5 | 157 | 239 | 37 | 115 | 7.82e-18 | 76.6 |
Msa0261480 | MtrunA17_Chr2g0318641 | 46.512 | 86 | 41 | 4 | 1 | 84 | 34 | 116 | 1.13e-14 | 68.6 |
Msa0261480 | MtrunA17_Chr2g0318591 | 54.217 | 83 | 34 | 2 | 158 | 239 | 5 | 84 | 5.66e-14 | 65.5 |
Msa0261480 | MtrunA17_Chr2g0318591 | 54.348 | 46 | 21 | 0 | 82 | 127 | 3 | 48 | 3.70e-12 | 60.8 |
Msa0261480 | MtrunA17_Chr2g0318591 | 45.977 | 87 | 42 | 3 | 1 | 84 | 1 | 85 | 7.44e-12 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0261480 | AT4G10265.1 | 65.789 | 76 | 21 | 1 | 84 | 159 | 5 | 75 | 1.37e-26 | 99.0 |
Msa0261480 | AT4G10265.1 | 58.750 | 80 | 27 | 2 | 161 | 239 | 8 | 82 | 3.70e-26 | 97.8 |
Msa0261480 | AT4G10265.1 | 60.000 | 85 | 31 | 2 | 1 | 84 | 1 | 83 | 1.06e-25 | 96.7 |
Msa0261480 | AT4G10270.1 | 59.524 | 84 | 31 | 2 | 160 | 240 | 7 | 90 | 4.08e-25 | 95.1 |
Msa0261480 | AT4G10270.1 | 65.000 | 80 | 26 | 1 | 82 | 159 | 3 | 82 | 2.18e-24 | 93.2 |
Msa0261480 | AT4G10270.1 | 50.000 | 92 | 36 | 3 | 1 | 84 | 1 | 90 | 3.75e-22 | 87.4 |
Find 53 sgRNAs with CRISPR-Local
Find 355 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTTGTTGCTACCAAATTTA+AGG | 0.083204 | 2_2:+59923940 | Msa0261480:CDS |
CTTCTTCTCATCCTTAAATT+TGG | 0.217937 | 2_2:-59923951 | None:intergenic |
CAAAGACTCCTCTGCCTGTT+TGG | 0.289223 | 2_2:-59923975 | None:intergenic |
CAAAGATTCCTCCGACTGTT+TGG | 0.315084 | 2_2:-59921924 | None:intergenic |
AGCAATCAGAGGAATCTTTA+AGG | 0.315897 | 2_2:+59927371 | Msa0261480:CDS |
CTGTCATGTTCTTGAGCTGC+TGG | 0.343401 | 2_2:+59921951 | Msa0261480:CDS |
AGTTATGTACTTGAGTTGTT+GGG | 0.380679 | 2_2:+59927396 | Msa0261480:CDS |
TTCATCTTCTTCTTCTCCTA+TGG | 0.383759 | 2_2:+59927321 | Msa0261480:CDS |
AAGTTATGTACTTGAGTTGT+TGG | 0.395020 | 2_2:+59927395 | Msa0261480:CDS |
CAACCAAAGCTCCTCTTAGT+TGG | 0.412441 | 2_2:-59927422 | None:intergenic |
GGATGAGAAGAAGGCCAAAC+AGG | 0.421065 | 2_2:+59923961 | Msa0261480:CDS |
TTCTAATTCTAGACAACAAA+AGG | 0.422761 | 2_2:+59927345 | Msa0261480:CDS |
AATTTCTTCAACAAAATTGA+AGG | 0.427677 | 2_2:+59921892 | Msa0261480:CDS |
TGTCATGTTCTTGAGCTGCT+GGG | 0.448867 | 2_2:+59921952 | Msa0261480:CDS |
AACAGGCAGAGGAGTCTTTG+AGG | 0.455186 | 2_2:+59923978 | Msa0261480:CDS |
GGCTGCAAGTGTTGGAGTTG+TGG | 0.471925 | 2_2:+59923799 | Msa0261480:CDS |
AACATGCTAAACATAATATC+AGG | 0.478609 | 2_2:+59921846 | Msa0261480:CDS |
TGGAGTGGTGGAGGCATTGA+AGG | 0.481220 | 2_2:+59921778 | Msa0261480:CDS |
AACCAAAGCTCCTCTTAGTT+GGG | 0.489304 | 2_2:-59927421 | None:intergenic |
CAAATTTAAGGATGAGAAGA+AGG | 0.489333 | 2_2:+59923952 | Msa0261480:CDS |
AGCAGAGCATGGGTAGCTGC+AGG | 0.497606 | 2_2:+59927178 | Msa0261480:intron |
GTGGAAGCATTGAAAGATCA+AGG | 0.506795 | 2_2:+59927214 | Msa0261480:CDS |
TTTGAACTGACTTTAGGGTA+TGG | 0.511934 | 2_2:-59927252 | None:intergenic |
GAAGAAGGCCAAACAGGCAG+AGG | 0.519704 | 2_2:+59923967 | Msa0261480:CDS |
AGCAACAAGCAAAGCATGGA+TGG | 0.538950 | 2_2:+59923775 | Msa0261480:intron |
GTGGAGGCATTGAAGGATCA+AGG | 0.544470 | 2_2:+59921785 | Msa0261480:CDS |
CCACACTCCATGTCCATGCT+CGG | 0.550816 | 2_2:-59921745 | None:intergenic |
GTTATGTACTTGAGTTGTTG+GGG | 0.552188 | 2_2:+59927397 | Msa0261480:CDS |
CAAGAAGCCGAGCATGGACA+TGG | 0.553815 | 2_2:+59921738 | Msa0261480:CDS |
GTCATGTTCTTGAGCTGCTG+GGG | 0.555931 | 2_2:+59921953 | Msa0261480:CDS |
TGCAGGCAGTGTTGCAGTTG+TGG | 0.558647 | 2_2:+59927195 | Msa0261480:CDS |
AACAAGTGTTGGAGTGGTGG+AGG | 0.565147 | 2_2:+59921769 | Msa0261480:CDS |
CTTGAGAAACTGATCTAACA+CGG | 0.566307 | 2_2:-59923895 | None:intergenic |
GGCAACAAGTGTTGGAGTGG+TGG | 0.567978 | 2_2:+59921766 | Msa0261480:CDS |
ATAGTTCCACCTACAGATAC+CGG | 0.568375 | 2_2:-59923840 | None:intergenic |
CAACAGCAACAAGCAAAGCA+TGG | 0.569709 | 2_2:+59923771 | Msa0261480:intron |
TGGAGTGTGGCAACAAGTGT+TGG | 0.572395 | 2_2:+59921758 | Msa0261480:CDS |
TGGATGGTGGCTGCAAGTGT+TGG | 0.573709 | 2_2:+59923791 | Msa0261480:CDS |
TGCAAGTGTTGGAGTTGTGG+AGG | 0.587512 | 2_2:+59923802 | Msa0261480:CDS |
GAGTTCAACAAGCAGAGCAT+GGG | 0.590239 | 2_2:+59927168 | Msa0261480:intron |
TGAGTTCAAGAAGCCGAGCA+TGG | 0.595479 | 2_2:+59921732 | Msa0261480:CDS |
TGTCTAGAATTAGAAACCAT+AGG | 0.610973 | 2_2:-59927337 | None:intergenic |
AAGATCAAGGAATATGCAGA+TGG | 0.613727 | 2_2:+59927227 | Msa0261480:CDS |
GGATGAGAAATCCAAACAGT+CGG | 0.614147 | 2_2:+59921913 | Msa0261480:CDS |
AGGATCAAGGAATATGCAGA+TGG | 0.620547 | 2_2:+59921798 | Msa0261480:CDS |
CCGAGCATGGACATGGAGTG+TGG | 0.625487 | 2_2:+59921745 | Msa0261480:CDS |
AAGATCAAGCCGGTATCTGT+AGG | 0.628254 | 2_2:+59923831 | Msa0261480:CDS |
ATCAAGCCGGTATCTGTAGG+TGG | 0.630665 | 2_2:+59923834 | Msa0261480:CDS |
AACAAGCAAAGCATGGATGG+TGG | 0.650577 | 2_2:+59923778 | Msa0261480:CDS |
ACAAAAGGCAAAGCAATCAG+AGG | 0.651467 | 2_2:+59927360 | Msa0261480:CDS |
TGAGAAATCCAAACAGTCGG+AGG | 0.652041 | 2_2:+59921916 | Msa0261480:CDS |
TGTGGCAACAAGTGTTGGAG+TGG | 0.655283 | 2_2:+59921763 | Msa0261480:CDS |
GAGGCTTTGAAAGATCAAGC+CGG | 0.680929 | 2_2:+59923821 | Msa0261480:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAAAAAATAAATTTTTTTT+TGG | - | chr2_2:59923426-59923445 | None:intergenic | 0.0% |
!!! | TTTTCAAAGATATTATATTT+TGG | - | chr2_2:59922985-59923004 | None:intergenic | 10.0% |
!!! | TATGGATAATTTTTTTTTTA+CGG | - | chr2_2:59924186-59924205 | None:intergenic | 10.0% |
!!! | TGATGTTTTTTTTTTATTTG+TGG | + | chr2_2:59922186-59922205 | Msa0261480:intron | 15.0% |
!! | ATTATTAATCTAACAAATTG+TGG | - | chr2_2:59922384-59922403 | None:intergenic | 15.0% |
!! | TGTAACTTATAATTTAATCA+GGG | + | chr2_2:59922664-59922683 | Msa0261480:intron | 15.0% |
!!! | ATTTTGATATTCCTATAAAA+TGG | + | chr2_2:59922922-59922941 | Msa0261480:intron | 15.0% |
!! | CTAATCAAATAAGATTAAAT+AGG | - | chr2_2:59923059-59923078 | None:intergenic | 15.0% |
!!! | ATTTAATCTTATTTGATTAG+AGG | + | chr2_2:59923059-59923078 | Msa0261480:intron | 15.0% |
!!! | AACATCAAAACAAATTTTTT+AGG | + | chr2_2:59923448-59923467 | Msa0261480:intron | 15.0% |
!!! | TTTTATTTAATTTCCAAAAC+CGG | + | chr2_2:59923550-59923569 | Msa0261480:intron | 15.0% |
!! | TATGTACAAATTAATCAATT+GGG | - | chr2_2:59924031-59924050 | None:intergenic | 15.0% |
!!! | TGTTGTTATTCTATTTAATT+AGG | + | chr2_2:59925180-59925199 | Msa0261480:intron | 15.0% |
!! | GCAAAAAGAAAATAAAAATT+AGG | + | chr2_2:59925529-59925548 | Msa0261480:intron | 15.0% |
!!! | CAAGTTATTATAATTTGTTT+AGG | - | chr2_2:59926579-59926598 | None:intergenic | 15.0% |
!! | ACAAGTTAAAATAGTTAAAA+AGG | + | chr2_2:59926678-59926697 | Msa0261480:intron | 15.0% |
!! | TAATAAGATTAGATGAATAT+TGG | + | chr2_2:59926817-59926836 | Msa0261480:intron | 15.0% |
!! | AATTTCTTCAACAAAATTGA+AGG | + | chr2_2:59921892-59921911 | Msa0261480:CDS | 20.0% |
!!! | AAATGTTGATTTCTTTAGTT+GGG | - | chr2_2:59921980-59921999 | None:intergenic | 20.0% |
!!! | TTTATGAGATGTATTTTACA+TGG | + | chr2_2:59922213-59922232 | Msa0261480:intron | 20.0% |
!!! | TCTTTTTAAACTTTTATTCG+TGG | + | chr2_2:59922243-59922262 | Msa0261480:intron | 20.0% |
!!! | TATATGAGATTAAGCTTTTT+AGG | - | chr2_2:59922502-59922521 | None:intergenic | 20.0% |
!! | AAAACATATGAGATTTCATT+TGG | + | chr2_2:59922523-59922542 | Msa0261480:intron | 20.0% |
!! | AAACATATGAGATTTCATTT+GGG | + | chr2_2:59922524-59922543 | Msa0261480:intron | 20.0% |
!! | CTTGACAAAAAAAACATAAA+AGG | - | chr2_2:59922559-59922578 | None:intergenic | 20.0% |
!! | GTGTAACTTATAATTTAATC+AGG | + | chr2_2:59922663-59922682 | Msa0261480:intron | 20.0% |
!! | AGAACATTCAAATAACTAAA+AGG | - | chr2_2:59922737-59922756 | None:intergenic | 20.0% |
!! | ACTTAACAGTTAGTATTATA+TGG | - | chr2_2:59922892-59922911 | None:intergenic | 20.0% |
!!! | TTTGTTGAATATTTGACTTA+AGG | + | chr2_2:59923087-59923106 | Msa0261480:intron | 20.0% |
!!! | TTGTTGAATATTTGACTTAA+GGG | + | chr2_2:59923088-59923107 | Msa0261480:intron | 20.0% |
!!! | TAAAATGAAGTCTTGTTAAT+AGG | + | chr2_2:59923145-59923164 | Msa0261480:intron | 20.0% |
!! | ATTAAAATGAATACTTCATC+CGG | + | chr2_2:59923228-59923247 | Msa0261480:intron | 20.0% |
!! | TAAAACAAAATAATCTACCT+TGG | - | chr2_2:59923535-59923554 | None:intergenic | 20.0% |
!! | CTATGTACAAATTAATCAAT+TGG | - | chr2_2:59924032-59924051 | None:intergenic | 20.0% |
!! | GTAAAGTTTGTAATATCAAA+CGG | + | chr2_2:59924077-59924096 | Msa0261480:intron | 20.0% |
!!! | TTTACTTGATTAGTTCAAAA+AGG | + | chr2_2:59924229-59924248 | Msa0261480:intron | 20.0% |
!!! | TTGTTGATAGTACATTTAAT+TGG | + | chr2_2:59924373-59924392 | Msa0261480:intron | 20.0% |
!!! | TAAATTTGATAATGTGAAGT+TGG | + | chr2_2:59924464-59924483 | Msa0261480:intron | 20.0% |
!! | AAACCTTCATATATAACATA+TGG | - | chr2_2:59924617-59924636 | None:intergenic | 20.0% |
!!! | TATTTAATTAGGTGATTTGT+TGG | + | chr2_2:59925191-59925210 | Msa0261480:intron | 20.0% |
!!! | TCTTAGCATTTTAAGAAAAA+AGG | - | chr2_2:59925406-59925425 | None:intergenic | 20.0% |
!! | ATATTAATAGTGAAAACATG+TGG | - | chr2_2:59926107-59926126 | None:intergenic | 20.0% |
!!! | TGGCTTTTAAAAAAAATCAT+TGG | + | chr2_2:59926837-59926856 | Msa0261480:intron | 20.0% |
! | AACATGCTAAACATAATATC+AGG | + | chr2_2:59921846-59921865 | Msa0261480:CDS | 25.0% |
!!! | TGTTGAAGAAATTTTGTTGT+TGG | - | chr2_2:59921885-59921904 | None:intergenic | 25.0% |
!!! | GAAATGTTGATTTCTTTAGT+TGG | - | chr2_2:59921981-59922000 | None:intergenic | 25.0% |
! | TCAACATTTCATTTATGCAA+AGG | + | chr2_2:59921991-59922010 | Msa0261480:intron | 25.0% |
! | GTAGAGATTTGTGTATATAT+AGG | + | chr2_2:59922133-59922152 | Msa0261480:intron | 25.0% |
! | CAGGCAATATATAAGAATAT+TGG | + | chr2_2:59922347-59922366 | Msa0261480:intron | 25.0% |
! | CTCTACTTTAATTATGTTCA+AGG | - | chr2_2:59922443-59922462 | None:intergenic | 25.0% |
! | TGAACATAATTAAAGTAGAG+AGG | + | chr2_2:59922443-59922462 | Msa0261480:intron | 25.0% |
! | ATTCCTATAAAATGGTATCT+TGG | + | chr2_2:59922930-59922949 | Msa0261480:intron | 25.0% |
!! | AATCCAAGATACCATTTTAT+AGG | - | chr2_2:59922936-59922955 | None:intergenic | 25.0% |
!! | TGTTGAATATTTGACTTAAG+GGG | + | chr2_2:59923089-59923108 | Msa0261480:intron | 25.0% |
! | CATTCAATAAATGATGTATG+TGG | - | chr2_2:59923285-59923304 | None:intergenic | 25.0% |
!! | AGTAGATGATAAGTATTGTT+TGG | - | chr2_2:59923717-59923736 | None:intergenic | 25.0% |
!! | ATTTGTTGCTACCAAATTTA+AGG | + | chr2_2:59923940-59923959 | Msa0261480:CDS | 25.0% |
!! | CAAGTTGTGATAAGTTTTTA+TGG | - | chr2_2:59924204-59924223 | None:intergenic | 25.0% |
!! | AAGAGTTAATTTGGTATCAT+TGG | - | chr2_2:59924544-59924563 | None:intergenic | 25.0% |
!! | ACATGATTGTGTAAATTTTG+TGG | - | chr2_2:59925491-59925510 | None:intergenic | 25.0% |
!! | TTATTTTCTTTTTGCTGCAT+GGG | - | chr2_2:59925524-59925543 | None:intergenic | 25.0% |
!!! | TTTATTTTCTTTTTGCTGCA+TGG | - | chr2_2:59925525-59925544 | None:intergenic | 25.0% |
! | TTCATTAACTGAAAAGGTTA+AGG | - | chr2_2:59925654-59925673 | None:intergenic | 25.0% |
! | TCTTCATTCATTAACTGAAA+AGG | - | chr2_2:59925660-59925679 | None:intergenic | 25.0% |
! | TTTCAGTTAATGAATGAAGA+AGG | + | chr2_2:59925660-59925679 | Msa0261480:intron | 25.0% |
!!! | ATTTTATTTAGACTCGTGTT+TGG | - | chr2_2:59925821-59925840 | None:intergenic | 25.0% |
! | AACTAATTAACAACAGTGTT+GGG | + | chr2_2:59925851-59925870 | Msa0261480:intron | 25.0% |
!!! | TTCGTAACTTTTGAAGAATT+CGG | - | chr2_2:59926207-59926226 | None:intergenic | 25.0% |
! | TCATATAGATTTCTGTACAA+AGG | - | chr2_2:59926322-59926341 | None:intergenic | 25.0% |
! | TCTATATGATGTTAAAAGCT+AGG | + | chr2_2:59926333-59926352 | Msa0261480:intron | 25.0% |
!! | TTTGAGATGCTAAAGTTAAT+AGG | - | chr2_2:59927006-59927025 | None:intergenic | 25.0% |
! | TTCTAATTCTAGACAACAAA+AGG | + | chr2_2:59927345-59927364 | Msa0261480:CDS | 25.0% |
! | AATCATGCCTTTTATTGCTT+TGG | + | chr2_2:59922071-59922090 | Msa0261480:intron | 30.0% |
TCATGATCCAAAGCAATAAA+AGG | - | chr2_2:59922081-59922100 | None:intergenic | 30.0% | |
ACTTCACGTATTCATCTTAA+AGG | - | chr2_2:59922603-59922622 | None:intergenic | 30.0% | |
ACACATTGCATAATATATGC+TGG | - | chr2_2:59922647-59922666 | None:intergenic | 30.0% | |
AGCATCAAAAAACTTAAGAC+GGG | - | chr2_2:59922690-59922709 | None:intergenic | 30.0% | |
GAGCATCAAAAAACTTAAGA+CGG | - | chr2_2:59922691-59922710 | None:intergenic | 30.0% | |
!!! | CTTAAGTTTTTTGATGCTCT+TGG | + | chr2_2:59922692-59922711 | Msa0261480:intron | 30.0% |
!!! | GATATTATATTTTGGCCTAG+AGG | - | chr2_2:59922977-59922996 | None:intergenic | 30.0% |
! | GTTGAATATTTGACTTAAGG+GGG | + | chr2_2:59923090-59923109 | Msa0261480:intron | 30.0% |
! | CTTTTGCTTATAATAGTGAC+CGG | - | chr2_2:59923250-59923269 | None:intergenic | 30.0% |
!! | AGTTAAAAAAGTACTTCCTC+CGG | - | chr2_2:59923380-59923399 | None:intergenic | 30.0% |
!! | TTTTAGGCACGTTTAAGATA+AGG | + | chr2_2:59923464-59923483 | Msa0261480:intron | 30.0% |
AACCATTAAAGTGAGTTAGA+CGG | + | chr2_2:59923487-59923506 | Msa0261480:intron | 30.0% | |
! | ATAAGTAACACACTTGGTTT+TGG | - | chr2_2:59923597-59923616 | None:intergenic | 30.0% |
! | GATGGTCGATCTTATTTATA+TGG | - | chr2_2:59923649-59923668 | None:intergenic | 30.0% |
CTTCTTCTCATCCTTAAATT+TGG | - | chr2_2:59923954-59923973 | None:intergenic | 30.0% | |
CAAATTTAAGGATGAGAAGA+AGG | + | chr2_2:59923952-59923971 | Msa0261480:CDS | 30.0% | |
AACGGCAATATTATTCAATG+AGG | + | chr2_2:59924095-59924114 | Msa0261480:intron | 30.0% | |
! | TACCTGATCAGTATTGAATT+TGG | + | chr2_2:59924155-59924174 | Msa0261480:intron | 30.0% |
TACCAAATTCAATACTGATC+AGG | - | chr2_2:59924160-59924179 | None:intergenic | 30.0% | |
! | TTAGTTCAAAAAGGTCGTTT+TGG | + | chr2_2:59924238-59924257 | Msa0261480:intron | 30.0% |
TCTAAGAATGACATGTAATG+AGG | - | chr2_2:59924415-59924434 | None:intergenic | 30.0% | |
TGATACCAAATTAACTCTTG+AGG | + | chr2_2:59924545-59924564 | Msa0261480:intron | 30.0% | |
CCACTAAAAATAAATTCAGC+TGG | - | chr2_2:59924594-59924613 | None:intergenic | 30.0% | |
!!! | CCAGCTGAATTTATTTTTAG+TGG | + | chr2_2:59924591-59924610 | Msa0261480:intron | 30.0% |
TGGCCATATGTTATATATGA+AGG | + | chr2_2:59924611-59924630 | Msa0261480:intron | 30.0% | |
AAAAACAAAAAAGAGCAGCA+AGG | + | chr2_2:59924658-59924677 | Msa0261480:intron | 30.0% | |
AAAACAAAAAAGAGCAGCAA+GGG | + | chr2_2:59924659-59924678 | Msa0261480:intron | 30.0% | |
GAAAAGAAAACTAAAGCGTA+GGG | + | chr2_2:59924681-59924700 | Msa0261480:intron | 30.0% | |
GATGACTTCATGACAAAATT+AGG | - | chr2_2:59924797-59924816 | None:intergenic | 30.0% | |
TTCCTTCTTTGATTGTATGA+TGG | + | chr2_2:59924825-59924844 | Msa0261480:intron | 30.0% | |
!! | TATGATGGACAAAGTAGTTT+CGG | + | chr2_2:59924840-59924859 | Msa0261480:intron | 30.0% |
! | TGCAATATGTCATTTGAATG+AGG | + | chr2_2:59925034-59925053 | Msa0261480:intron | 30.0% |
! | GCAATATGTCATTTGAATGA+GGG | + | chr2_2:59925035-59925054 | Msa0261480:intron | 30.0% |
TCACAACCTTTGTAACATAA+GGG | - | chr2_2:59925380-59925399 | None:intergenic | 30.0% | |
ACTGCATTTAAACACATCAA+AGG | + | chr2_2:59925554-59925573 | Msa0261480:intron | 30.0% | |
AGGTTAAGGTTTAGATGTAT+TGG | - | chr2_2:59925640-59925659 | None:intergenic | 30.0% | |
GAACTAATTAACAACAGTGT+TGG | + | chr2_2:59925850-59925869 | Msa0261480:intron | 30.0% | |
! | TGAGAGGATTTTCAATCATA+AGG | - | chr2_2:59926292-59926311 | None:intergenic | 30.0% |
! | AAAAGCTAGGCGATAATTTT+TGG | + | chr2_2:59926346-59926365 | Msa0261480:intron | 30.0% |
ACATTTCATCACAGTAACAA+CGG | - | chr2_2:59926419-59926438 | None:intergenic | 30.0% | |
!!! | TGACTTTGGAGTCATATTTT+TGG | - | chr2_2:59926458-59926477 | None:intergenic | 30.0% |
!! | AGTTTTATGATTGTTGCAAG+AGG | + | chr2_2:59926629-59926648 | Msa0261480:intron | 30.0% |
!! | GTTAGTTGTTTTCTAGACTA+TGG | - | chr2_2:59926933-59926952 | None:intergenic | 30.0% |
TGAAGGAGGTTGTTATATAT+AGG | - | chr2_2:59927033-59927052 | None:intergenic | 30.0% | |
!!! | ATGTATCTTGTGTTTTTGGT+TGG | - | chr2_2:59927070-59927089 | None:intergenic | 30.0% |
! | GTGTATGTATCTTGTGTTTT+TGG | - | chr2_2:59927074-59927093 | None:intergenic | 30.0% |
!! | GTGATTTTGAACTGACTTTA+GGG | - | chr2_2:59927260-59927279 | None:intergenic | 30.0% |
! | TGTCTAGAATTAGAAACCAT+AGG | - | chr2_2:59927340-59927359 | None:intergenic | 30.0% |
! | AAGTTATGTACTTGAGTTGT+TGG | + | chr2_2:59927395-59927414 | Msa0261480:CDS | 30.0% |
! | AGTTATGTACTTGAGTTGTT+GGG | + | chr2_2:59927396-59927415 | Msa0261480:CDS | 30.0% |
! | TGATCAAAAGCTTGCTTGAT+TGG | - | chr2_2:59922022-59922041 | None:intergenic | 35.0% |
! | TATTGCTTTGGATCATGAAG+TGG | + | chr2_2:59922083-59922102 | Msa0261480:intron | 35.0% |
! | GAAGTGATCAACTTTTGCAT+GGG | + | chr2_2:59922111-59922130 | Msa0261480:intron | 35.0% |
AAGTGTTCACAGTTCAAATC+CGG | + | chr2_2:59922619-59922638 | Msa0261480:intron | 35.0% | |
TGCATAATATATGCTGGATC+CGG | - | chr2_2:59922641-59922660 | None:intergenic | 35.0% | |
!!! | TTATATTTTGGCCTAGAGGA+TGG | - | chr2_2:59922973-59922992 | None:intergenic | 35.0% |
CCTTTGCTTATAATAGTGAC+CGG | + | chr2_2:59923358-59923377 | Msa0261480:intron | 35.0% | |
AGCTAGATAAGTAACACACT+TGG | - | chr2_2:59923603-59923622 | None:intergenic | 35.0% | |
TTACTTATCTAGCTAGCTCA+TGG | + | chr2_2:59923609-59923628 | Msa0261480:intron | 35.0% | |
GTTGATTGATGAATGAAGAG+AGG | - | chr2_2:59923675-59923694 | None:intergenic | 35.0% | |
! | GTTGCACGATTCATGATTTT+TGG | - | chr2_2:59923755-59923774 | None:intergenic | 35.0% |
! | CTGATCTAACACGGTTTTTA+AGG | - | chr2_2:59923889-59923908 | None:intergenic | 35.0% |
CTTGAGAAACTGATCTAACA+CGG | - | chr2_2:59923898-59923917 | None:intergenic | 35.0% | |
CACTGAGAAACATAGATATG+TGG | - | chr2_2:59924133-59924152 | None:intergenic | 35.0% | |
AATTCAGATGAAGATCGTGT+TGG | + | chr2_2:59924300-59924319 | Msa0261480:intron | 35.0% | |
GAATGTTCCTTAAAGTGTGT+TGG | + | chr2_2:59924492-59924511 | Msa0261480:intron | 35.0% | |
CACATCCTCAAGAGTTAATT+TGG | - | chr2_2:59924553-59924572 | None:intergenic | 35.0% | |
GGAAAAGAAAACTAAAGCGT+AGG | + | chr2_2:59924680-59924699 | Msa0261480:intron | 35.0% | |
TTGTCATGAAGTCATCACTA+TGG | + | chr2_2:59924801-59924820 | Msa0261480:intron | 35.0% | |
GTCCATCATACAATCAAAGA+AGG | - | chr2_2:59924830-59924849 | None:intergenic | 35.0% | |
!! | ATGATGGACAAAGTAGTTTC+GGG | + | chr2_2:59924841-59924860 | Msa0261480:intron | 35.0% |
CTCTCAATCAATCTCATCTT+GGG | - | chr2_2:59924929-59924948 | None:intergenic | 35.0% | |
TCTCTCAATCAATCTCATCT+TGG | - | chr2_2:59924930-59924949 | None:intergenic | 35.0% | |
AGATGAGATTGATTGAGAGA+AGG | + | chr2_2:59924930-59924949 | Msa0261480:intron | 35.0% | |
GATGAGATTGATTGAGAGAA+GGG | + | chr2_2:59924931-59924950 | Msa0261480:intron | 35.0% | |
TGTTCCATTCTCAATGTTGA+TGG | - | chr2_2:59925152-59925171 | None:intergenic | 35.0% | |
CTCACAACCTTTGTAACATA+AGG | - | chr2_2:59925381-59925400 | None:intergenic | 35.0% | |
TTGATTGTGATTGTCTCACT+TGG | - | chr2_2:59925589-59925608 | None:intergenic | 35.0% | |
CACATAATTCGTGTGATTTG+AGG | + | chr2_2:59925687-59925706 | Msa0261480:intron | 35.0% | |
TTATTTAGACTCGTGTTTGG+TGG | - | chr2_2:59925818-59925837 | None:intergenic | 35.0% | |
AATTATCTCTTCCCAACAGT+GGG | - | chr2_2:59925896-59925915 | None:intergenic | 35.0% | |
TAATTATCTCTTCCCAACAG+TGG | - | chr2_2:59925897-59925916 | None:intergenic | 35.0% | |
GGAAGAGATAATTAAATCCC+TGG | + | chr2_2:59925903-59925922 | Msa0261480:intron | 35.0% | |
GACAATTCTTGCATATGGAA+AGG | - | chr2_2:59926015-59926034 | None:intergenic | 35.0% | |
!!! | GTTTTTTGATAGTCCCACAT+CGG | - | chr2_2:59926037-59926056 | None:intergenic | 35.0% |
!! | TTTTGAAGAATTCGGTACGT+GGG | - | chr2_2:59926199-59926218 | None:intergenic | 35.0% |
TAGATTTCTGTACAAAGGAG+AGG | - | chr2_2:59926317-59926336 | None:intergenic | 35.0% | |
ATCATCTCCTTCAGTTTGAT+GGG | - | chr2_2:59926385-59926404 | None:intergenic | 35.0% | |
!!! | AGTCATATTTTTGGCTGGTT+AGG | - | chr2_2:59926449-59926468 | None:intergenic | 35.0% |
!!! | TTTGGAGTCATATTTTTGGC+TGG | - | chr2_2:59926454-59926473 | None:intergenic | 35.0% |
GACTTTATTACAGGTGACTT+TGG | - | chr2_2:59926472-59926491 | None:intergenic | 35.0% | |
TTTCAACGCGACTTTATTAC+AGG | - | chr2_2:59926481-59926500 | None:intergenic | 35.0% | |
TTTCAAACAACGACATTCAG+TGG | + | chr2_2:59926519-59926538 | Msa0261480:intron | 35.0% | |
TATATAGAAGACAGTGACAG+TGG | - | chr2_2:59926793-59926812 | None:intergenic | 35.0% | |
AAAGAATAGGAAAATACCGG+GGG | - | chr2_2:59926969-59926988 | None:intergenic | 35.0% | |
CAAAGAATAGGAAAATACCG+GGG | - | chr2_2:59926970-59926989 | None:intergenic | 35.0% | |
CCAAAGAATAGGAAAATACC+GGG | - | chr2_2:59926971-59926990 | None:intergenic | 35.0% | |
CCCAAAGAATAGGAAAATAC+CGG | - | chr2_2:59926972-59926991 | None:intergenic | 35.0% | |
! | CCGGTATTTTCCTATTCTTT+GGG | + | chr2_2:59926969-59926988 | Msa0261480:intron | 35.0% |
AAGATCAAGGAATATGCAGA+TGG | + | chr2_2:59927227-59927246 | Msa0261480:CDS | 35.0% | |
!! | TTTGAACTGACTTTAGGGTA+TGG | - | chr2_2:59927255-59927274 | None:intergenic | 35.0% |
!! | CGTGATTTTGAACTGACTTT+AGG | - | chr2_2:59927261-59927280 | None:intergenic | 35.0% |
TTCATCTTCTTCTTCTCCTA+TGG | + | chr2_2:59927321-59927340 | Msa0261480:CDS | 35.0% | |
AGCAATCAGAGGAATCTTTA+AGG | + | chr2_2:59927371-59927390 | Msa0261480:CDS | 35.0% | |
! | GTTATGTACTTGAGTTGTTG+GGG | + | chr2_2:59927397-59927416 | Msa0261480:CDS | 35.0% |
AGGATCAAGGAATATGCAGA+TGG | + | chr2_2:59921798-59921817 | Msa0261480:CDS | 40.0% | |
GGATGAGAAATCCAAACAGT+CGG | + | chr2_2:59921913-59921932 | Msa0261480:CDS | 40.0% | |
TTTGGATCATGAAGTGGTCT+TGG | + | chr2_2:59922089-59922108 | Msa0261480:intron | 40.0% | |
! | GGAAGTGATCAACTTTTGCA+TGG | + | chr2_2:59922110-59922129 | Msa0261480:intron | 40.0% |
CCGGTCACTATTATAAGCAA+AGG | - | chr2_2:59923247-59923266 | None:intergenic | 40.0% | |
TTGCTTATAATAGTGACCGG+AGG | + | chr2_2:59923361-59923380 | Msa0261480:intron | 40.0% | |
CTCCGTCTAACTCACTTTAA+TGG | - | chr2_2:59923492-59923511 | None:intergenic | 40.0% | |
AAACCATAGGCTATGTCTAC+CGG | - | chr2_2:59923572-59923591 | None:intergenic | 40.0% | |
!!! | CTTGGTTTTGGAGAAACCAT+AGG | - | chr2_2:59923585-59923604 | None:intergenic | 40.0% |
ATGAATGAAGAGAGGAGTGA+TGG | - | chr2_2:59923667-59923686 | None:intergenic | 40.0% | |
ATAGTTCCACCTACAGATAC+CGG | - | chr2_2:59923843-59923862 | None:intergenic | 40.0% | |
!! | AAGGTCGTTTTGGTGAAAGA+AGG | + | chr2_2:59924248-59924267 | Msa0261480:intron | 40.0% |
!! | TCCTTAAAGTGTGTTGGCTT+TGG | + | chr2_2:59924498-59924517 | Msa0261480:intron | 40.0% |
TCCAAAGCCAACACACTTTA+AGG | - | chr2_2:59924502-59924521 | None:intergenic | 40.0% | |
!! | TGGCTTTGGAGAGGTTAATT+TGG | + | chr2_2:59924512-59924531 | Msa0261480:intron | 40.0% |
GATGACAAACAGATCATCTG+CGG | + | chr2_2:59924766-59924785 | Msa0261480:intron | 40.0% | |
TCAGGACATCAAAGACCTTA+TGG | - | chr2_2:59924870-59924889 | None:intergenic | 40.0% | |
CATTTACGCTGTTCTTGTTC+AGG | - | chr2_2:59924888-59924907 | None:intergenic | 40.0% | |
GAACAAGAACAGCGTAAATG+TGG | + | chr2_2:59924888-59924907 | Msa0261480:intron | 40.0% | |
!! | TACCCATGTTGATAGCCATA+TGG | + | chr2_2:59924981-59925000 | Msa0261480:intron | 40.0% |
CACCATATGGCTATCAACAT+GGG | - | chr2_2:59924986-59925005 | None:intergenic | 40.0% | |
TGCATATGCATGTATCTCAC+AGG | - | chr2_2:59925076-59925095 | None:intergenic | 40.0% | |
! | AATGTTGATGGAGCTGCAAT+GGG | - | chr2_2:59925140-59925159 | None:intergenic | 40.0% |
AGCTCCATCAACATTGAGAA+TGG | + | chr2_2:59925145-59925164 | Msa0261480:intron | 40.0% | |
GTAACCAAGTCTCGTTGTTA+AGG | + | chr2_2:59925291-59925310 | Msa0261480:intron | 40.0% | |
CTTTGTAACATAAGGGCTCT+TGG | - | chr2_2:59925373-59925392 | None:intergenic | 40.0% | |
CAAGAGCCCTTATGTTACAA+AGG | + | chr2_2:59925371-59925390 | Msa0261480:intron | 40.0% | |
TTCTCTGATACACATTGTGC+TGG | - | chr2_2:59925458-59925477 | None:intergenic | 40.0% | |
ATTGTGATTGTCTCACTTGG+AGG | - | chr2_2:59925586-59925605 | None:intergenic | 40.0% | |
GTTGGGTAGTGATAAATCAC+TGG | + | chr2_2:59925868-59925887 | Msa0261480:intron | 40.0% | |
ATTATCTCTTCCCAACAGTG+GGG | - | chr2_2:59925895-59925914 | None:intergenic | 40.0% | |
TGCATATGGAAAGGAAGAAG+TGG | - | chr2_2:59926006-59926025 | None:intergenic | 40.0% | |
CATCGGACAATTCTTGCATA+TGG | - | chr2_2:59926020-59926039 | None:intergenic | 40.0% | |
TATGCAAGAATTGTCCGATG+TGG | + | chr2_2:59926020-59926039 | Msa0261480:intron | 40.0% | |
ATGCAAGAATTGTCCGATGT+GGG | + | chr2_2:59926021-59926040 | Msa0261480:intron | 40.0% | |
ATACTTAGTCGGTACGCTAT+GGG | - | chr2_2:59926172-59926191 | None:intergenic | 40.0% | |
TATACTTAGTCGGTACGCTA+TGG | - | chr2_2:59926173-59926192 | None:intergenic | 40.0% | |
TTTGAAGAATTCGGTACGTG+GGG | - | chr2_2:59926198-59926217 | None:intergenic | 40.0% | |
!! | CTTTTGAAGAATTCGGTACG+TGG | - | chr2_2:59926200-59926219 | None:intergenic | 40.0% |
AATTGCGAACCATGTGACTA+TGG | + | chr2_2:59926261-59926280 | Msa0261480:intron | 40.0% | |
ATTGCGAACCATGTGACTAT+GGG | + | chr2_2:59926262-59926281 | Msa0261480:intron | 40.0% | |
GATCATCTCCTTCAGTTTGA+TGG | - | chr2_2:59926386-59926405 | None:intergenic | 40.0% | |
CAGTAACAACGGTAACATTC+TGG | - | chr2_2:59926408-59926427 | None:intergenic | 40.0% | |
! | CGAAGTGTTCACAGTTTACA+TGG | + | chr2_2:59926654-59926673 | Msa0261480:intron | 40.0% |
AAGAATAGGAAAATACCGGG+GGG | - | chr2_2:59926968-59926987 | None:intergenic | 40.0% | |
! | CCCGGTATTTTCCTATTCTT+TGG | + | chr2_2:59926968-59926987 | Msa0261480:intron | 40.0% |
TGATGAAACGCCCAAAGAAT+AGG | - | chr2_2:59926982-59927001 | None:intergenic | 40.0% | |
TTGATGAAGAAGAGTGAAGG+AGG | - | chr2_2:59927047-59927066 | None:intergenic | 40.0% | |
!! | TGGTTGATGAAGAAGAGTGA+AGG | - | chr2_2:59927050-59927069 | None:intergenic | 40.0% |
!! | GTGGAAGCATTGAAAGATCA+AGG | + | chr2_2:59927214-59927233 | Msa0261480:CDS | 40.0% |
ACAAAAGGCAAAGCAATCAG+AGG | + | chr2_2:59927360-59927379 | Msa0261480:CDS | 40.0% | |
TGAGAAATCCAAACAGTCGG+AGG | + | chr2_2:59921916-59921935 | Msa0261480:CDS | 45.0% | |
CAAAGATTCCTCCGACTGTT+TGG | - | chr2_2:59921927-59921946 | None:intergenic | 45.0% | |
TGTCATGTTCTTGAGCTGCT+GGG | + | chr2_2:59921952-59921971 | Msa0261480:CDS | 45.0% | |
!! | CAAGCGTTGAAGACGAAACT+TGG | + | chr2_2:59922324-59922343 | Msa0261480:intron | 45.0% |
!! | ATTTTGGCCTAGAGGATGGA+TGG | - | chr2_2:59922969-59922988 | None:intergenic | 45.0% |
GTTAGACGGAGTGAACGTAA+TGG | + | chr2_2:59923501-59923520 | Msa0261480:intron | 45.0% | |
GGAGTGAACGTAATGGCAAA+TGG | + | chr2_2:59923508-59923527 | Msa0261480:intron | 45.0% | |
ACGTAATGGCAAATGGTCCA+AGG | + | chr2_2:59923515-59923534 | Msa0261480:intron | 45.0% | |
!!! | TAGGCTATGTCTACCGGTTT+TGG | - | chr2_2:59923566-59923585 | None:intergenic | 45.0% |
AAACCGGTAGACATAGCCTA+TGG | + | chr2_2:59923566-59923585 | Msa0261480:intron | 45.0% | |
CAACAGCAACAAGCAAAGCA+TGG | + | chr2_2:59923771-59923790 | Msa0261480:intron | 45.0% | |
AGCAACAAGCAAAGCATGGA+TGG | + | chr2_2:59923775-59923794 | Msa0261480:intron | 45.0% | |
AACAAGCAAAGCATGGATGG+TGG | + | chr2_2:59923778-59923797 | Msa0261480:CDS | 45.0% | |
!! | GAGGCTTTGAAAGATCAAGC+CGG | + | chr2_2:59923821-59923840 | Msa0261480:CDS | 45.0% |
AAGATCAAGCCGGTATCTGT+AGG | + | chr2_2:59923831-59923850 | Msa0261480:CDS | 45.0% | |
TGTCATGTACTTGAGCTGCT+GGG | + | chr2_2:59924003-59924022 | Msa0261480:intron | 45.0% | |
!! | AAAGTGTGTTGGCTTTGGAG+AGG | + | chr2_2:59924503-59924522 | Msa0261480:intron | 45.0% |
! | TCTTCTCAGGATGGATTCGA+TGG | - | chr2_2:59924717-59924736 | None:intergenic | 45.0% |
ATCGAATCCATCCTGAGAAG+AGG | + | chr2_2:59924716-59924735 | Msa0261480:intron | 45.0% | |
AATCCATCCTGAGAAGAGGA+AGG | + | chr2_2:59924720-59924739 | Msa0261480:intron | 45.0% | |
TGTCATCCATTCTTCTCCAC+CGG | - | chr2_2:59924753-59924772 | None:intergenic | 45.0% | |
! | AGTAGTTTCGGGTAGCCATA+AGG | + | chr2_2:59924852-59924871 | Msa0261480:intron | 45.0% |
ACAGCGTAAATGTGGTACTG+CGG | + | chr2_2:59924896-59924915 | Msa0261480:intron | 45.0% | |
CCACCATATGGCTATCAACA+TGG | - | chr2_2:59924987-59925006 | None:intergenic | 45.0% | |
!! | CCATGTTGATAGCCATATGG+TGG | + | chr2_2:59924984-59925003 | Msa0261480:intron | 45.0% |
GTACACCATCAAAACCTGCT+CGG | + | chr2_2:59925106-59925125 | Msa0261480:intron | 45.0% | |
! | ATGTTGATGGAGCTGCAATG+GGG | - | chr2_2:59925139-59925158 | None:intergenic | 45.0% |
! | CAATGTTGATGGAGCTGCAA+TGG | - | chr2_2:59925141-59925160 | None:intergenic | 45.0% |
TCTCTCGTGTTGAAAGCTCA+AGG | + | chr2_2:59925223-59925242 | Msa0261480:intron | 45.0% | |
TGTGCCTTAACAACGAGACT+TGG | - | chr2_2:59925298-59925317 | None:intergenic | 45.0% | |
GATATCTCTAAACCCACTCG+AGG | + | chr2_2:59925327-59925346 | Msa0261480:intron | 45.0% | |
TGGTGGAATATCTTCCTTGC+CGG | - | chr2_2:59925353-59925372 | None:intergenic | 45.0% | |
TGTAACATAAGGGCTCTTGG+TGG | - | chr2_2:59925370-59925389 | None:intergenic | 45.0% | |
TGATACACATTGTGCTGGAG+GGG | - | chr2_2:59925453-59925472 | None:intergenic | 45.0% | |
CTGATACACATTGTGCTGGA+GGG | - | chr2_2:59925454-59925473 | None:intergenic | 45.0% | |
TCTGATACACATTGTGCTGG+AGG | - | chr2_2:59925455-59925474 | None:intergenic | 45.0% | |
! | TTTTTGCTGCATGGGCAACA+TGG | - | chr2_2:59925516-59925535 | None:intergenic | 45.0% |
! | CCCAGTTCTGACGAATTCTT+GGG | - | chr2_2:59925779-59925798 | None:intergenic | 45.0% |
CCCAAGAATTCGTCAGAACT+GGG | + | chr2_2:59925776-59925795 | Msa0261480:intron | 45.0% | |
! | TCCCAGTTCTGACGAATTCT+TGG | - | chr2_2:59925780-59925799 | None:intergenic | 45.0% |
!!! | GTTTGGTGGTGTGGTTTTTG+CGG | - | chr2_2:59925804-59925823 | None:intergenic | 45.0% |
TTGAAGAATTCGGTACGTGG+GGG | - | chr2_2:59926197-59926216 | None:intergenic | 45.0% | |
AAGGTTGACCCATAGTCACA+TGG | - | chr2_2:59926273-59926292 | None:intergenic | 45.0% | |
GTACAAAGGAGAGGAATGAG+AGG | - | chr2_2:59926308-59926327 | None:intergenic | 45.0% | |
TGAGTTCAACAAGCAGAGCA+TGG | + | chr2_2:59927167-59927186 | Msa0261480:intron | 45.0% | |
GAGTTCAACAAGCAGAGCAT+GGG | + | chr2_2:59927168-59927187 | Msa0261480:intron | 45.0% | |
TGAGTTCAAGAAGCCGAGCA+TGG | + | chr2_2:59921732-59921751 | Msa0261480:CDS | 50.0% | |
TGGAGTGTGGCAACAAGTGT+TGG | + | chr2_2:59921758-59921777 | Msa0261480:CDS | 50.0% | |
!! | TGTGGCAACAAGTGTTGGAG+TGG | + | chr2_2:59921763-59921782 | Msa0261480:CDS | 50.0% |
!! | AACAAGTGTTGGAGTGGTGG+AGG | + | chr2_2:59921769-59921788 | Msa0261480:CDS | 50.0% |
!! | GTGGAGGCATTGAAGGATCA+AGG | + | chr2_2:59921785-59921804 | Msa0261480:CDS | 50.0% |
CTGTCATGTTCTTGAGCTGC+TGG | + | chr2_2:59921951-59921970 | Msa0261480:CDS | 50.0% | |
GTCATGTTCTTGAGCTGCTG+GGG | + | chr2_2:59921953-59921972 | Msa0261480:CDS | 50.0% | |
CGTTGAAGACGAAACTTGGC+AGG | + | chr2_2:59922328-59922347 | Msa0261480:intron | 50.0% | |
!! | TGCAAGTGTTGGAGTTGTGG+AGG | + | chr2_2:59923802-59923821 | Msa0261480:CDS | 50.0% |
ATCAAGCCGGTATCTGTAGG+TGG | + | chr2_2:59923834-59923853 | Msa0261480:CDS | 50.0% | |
GGATGAGAAGAAGGCCAAAC+AGG | + | chr2_2:59923961-59923980 | Msa0261480:CDS | 50.0% | |
CAAAGACTCCTCTGCCTGTT+TGG | - | chr2_2:59923978-59923997 | None:intergenic | 50.0% | |
AACAGGCAGAGGAGTCTTTG+AGG | + | chr2_2:59923978-59923997 | Msa0261480:CDS | 50.0% | |
CTGTCATGTACTTGAGCTGC+TGG | + | chr2_2:59924002-59924021 | Msa0261480:intron | 50.0% | |
GTCATGTACTTGAGCTGCTG+GGG | + | chr2_2:59924004-59924023 | Msa0261480:intron | 50.0% | |
TTGACCTCCTTCCTCTTCTC+AGG | - | chr2_2:59924730-59924749 | None:intergenic | 50.0% | |
AGAAGAGGAAGGAGGTCAAC+CGG | + | chr2_2:59924731-59924750 | Msa0261480:intron | 50.0% | |
GAGCTCACAACTACTCACTG+CGG | - | chr2_2:59925010-59925029 | None:intergenic | 50.0% | |
!! | CCAATCCGAGCAGGTTTTGA+TGG | - | chr2_2:59925114-59925133 | None:intergenic | 50.0% |
CCATCAAAACCTGCTCGGAT+TGG | + | chr2_2:59925111-59925130 | Msa0261480:intron | 50.0% | |
CTCGTGTTGAAAGCTCAAGG+TGG | + | chr2_2:59925226-59925245 | Msa0261480:intron | 50.0% | |
GTGTTGAAAGCTCAAGGTGG+TGG | + | chr2_2:59925229-59925248 | Msa0261480:intron | 50.0% | |
! | ATTTGAGGTGAACCGCGAAC+TGG | + | chr2_2:59925702-59925721 | Msa0261480:intron | 50.0% |
TTGGGCGAATTGTAGCGAAC+CGG | - | chr2_2:59925761-59925780 | None:intergenic | 50.0% | |
GCCCAAGAATTCGTCAGAAC+TGG | + | chr2_2:59925775-59925794 | Msa0261480:intron | 50.0% | |
!! | TAGACTCGTGTTTGGTGGTG+TGG | - | chr2_2:59925813-59925832 | None:intergenic | 50.0% |
AAATCACTGGTCCCCACTGT+TGG | + | chr2_2:59925881-59925900 | Msa0261480:intron | 50.0% | |
AATCACTGGTCCCCACTGTT+GGG | + | chr2_2:59925882-59925901 | Msa0261480:intron | 50.0% | |
! | ATGGTTACTTGGTGGGACCA+GGG | - | chr2_2:59925923-59925942 | None:intergenic | 50.0% |
TCCCACCAAGTAACCATGCT+AGG | + | chr2_2:59925926-59925945 | Msa0261480:intron | 50.0% | |
GCCTAGCATGGTTACTTGGT+GGG | - | chr2_2:59925930-59925949 | None:intergenic | 50.0% | |
! | ACGTGGGGGGTATACTTAGT+CGG | - | chr2_2:59926183-59926202 | None:intergenic | 50.0% |
TGAAGAATTCGGTACGTGGG+GGG | - | chr2_2:59926196-59926215 | None:intergenic | 50.0% | |
ACATGGTTCGCAATTCGCTC+CGG | - | chr2_2:59926256-59926275 | None:intergenic | 50.0% | |
!! | CTTCAGTTTGATGGGCTAGG+TGG | - | chr2_2:59926377-59926396 | None:intergenic | 50.0% |
CACCTAGCCCATCAAACTGA+AGG | + | chr2_2:59926375-59926394 | Msa0261480:intron | 50.0% | |
!! | CTCCTTCAGTTTGATGGGCT+AGG | - | chr2_2:59926380-59926399 | None:intergenic | 50.0% |
AGACAGTGACAGTGGCAAGA+TGG | - | chr2_2:59926785-59926804 | None:intergenic | 50.0% | |
AACAATAGCTTTCAGCCCCC+CGG | + | chr2_2:59926950-59926969 | Msa0261480:intron | 50.0% | |
CAAGAAGCCGAGCATGGACA+TGG | + | chr2_2:59921738-59921757 | Msa0261480:CDS | 55.0% | |
CCACACTCCATGTCCATGCT+CGG | - | chr2_2:59921748-59921767 | None:intergenic | 55.0% | |
!! | GGCAACAAGTGTTGGAGTGG+TGG | + | chr2_2:59921766-59921785 | Msa0261480:CDS | 55.0% |
!! | TGGAGTGGTGGAGGCATTGA+AGG | + | chr2_2:59921778-59921797 | Msa0261480:CDS | 55.0% |
GTCGCTTCCATCCATCCTCT+AGG | + | chr2_2:59922959-59922978 | Msa0261480:intron | 55.0% | |
! | TGGATGGTGGCTGCAAGTGT+TGG | + | chr2_2:59923791-59923810 | Msa0261480:CDS | 55.0% |
!! | GGCTGCAAGTGTTGGAGTTG+TGG | + | chr2_2:59923799-59923818 | Msa0261480:CDS | 55.0% |
GAAGAAGGCCAAACAGGCAG+AGG | + | chr2_2:59923967-59923986 | Msa0261480:CDS | 55.0% | |
CCTCCTTCCTCTTCTCAGGA+TGG | - | chr2_2:59924726-59924745 | None:intergenic | 55.0% | |
CCATCCTGAGAAGAGGAAGG+AGG | + | chr2_2:59924723-59924742 | Msa0261480:intron | 55.0% | |
GGTCAACCGGTGGAGAAGAA+TGG | + | chr2_2:59924744-59924763 | Msa0261480:intron | 55.0% | |
TACTCACTGCGGCCACCATA+TGG | - | chr2_2:59924999-59925018 | None:intergenic | 55.0% | |
AATGGGGTTCCAATCCGAGC+AGG | - | chr2_2:59925123-59925142 | None:intergenic | 55.0% | |
TCTCTAAACCCACTCGAGGC+CGG | + | chr2_2:59925331-59925350 | Msa0261480:intron | 55.0% | |
GGTACGTACGAACCAGTTCG+CGG | - | chr2_2:59925717-59925736 | None:intergenic | 55.0% | |
!! | GCGAACTGGTTCGTACGTAC+CGG | + | chr2_2:59925716-59925735 | Msa0261480:intron | 55.0% |
!! | TACTCCGAAGTACCGCGAAC+CGG | - | chr2_2:59925738-59925757 | None:intergenic | 55.0% |
TTCGCGGTACTTCGGAGTAC+CGG | + | chr2_2:59925739-59925758 | Msa0261480:intron | 55.0% | |
! | CATGGTTACTTGGTGGGACC+AGG | - | chr2_2:59925924-59925943 | None:intergenic | 55.0% |
CGCCTAGCATGGTTACTTGG+TGG | - | chr2_2:59925931-59925950 | None:intergenic | 55.0% | |
ACGCGCCTAGCATGGTTACT+TGG | - | chr2_2:59925934-59925953 | None:intergenic | 55.0% | |
AAGTAACCATGCTAGGCGCG+TGG | + | chr2_2:59925933-59925952 | Msa0261480:intron | 55.0% | |
AGTAACCATGCTAGGCGCGT+GGG | + | chr2_2:59925934-59925953 | Msa0261480:intron | 55.0% | |
ATTCGCTCCGGTACGTGGTA+CGG | - | chr2_2:59926244-59926263 | None:intergenic | 55.0% | |
TGCAGGCAGTGTTGCAGTTG+TGG | + | chr2_2:59927195-59927214 | Msa0261480:CDS | 55.0% | |
CCGAGCATGGACATGGAGTG+TGG | + | chr2_2:59921745-59921764 | Msa0261480:CDS | 60.0% | |
AGAGGAAGGAGGTCAACCGG+TGG | + | chr2_2:59924734-59924753 | Msa0261480:intron | 60.0% | |
!! | GGTTCGTACGTACCGGTTCG+CGG | + | chr2_2:59925723-59925742 | Msa0261480:intron | 60.0% |
!! | CGTACCGGTTCGCGGTACTT+CGG | + | chr2_2:59925731-59925750 | Msa0261480:intron | 60.0% |
CAAAACCCACGCGCCTAGCA+TGG | - | chr2_2:59925942-59925961 | None:intergenic | 60.0% | |
! | CATGCTAGGCGCGTGGGTTT+TGG | + | chr2_2:59925940-59925959 | Msa0261480:intron | 60.0% |
TCCGGTACGTGGTACGGGTT+CGG | - | chr2_2:59926238-59926257 | None:intergenic | 60.0% | |
TTCGCTCCGGTACGTGGTAC+GGG | - | chr2_2:59926243-59926262 | None:intergenic | 60.0% | |
TCGCAATTCGCTCCGGTACG+TGG | - | chr2_2:59926249-59926268 | None:intergenic | 60.0% | |
AGCAGAGCATGGGTAGCTGC+AGG | + | chr2_2:59927178-59927197 | Msa0261480:intron | 60.0% | |
AAACCCACTCGAGGCCGGCA+AGG | + | chr2_2:59925336-59925355 | Msa0261480:intron | 65.0% | |
CTTCCTTGCCGGCCTCGAGT+GGG | - | chr2_2:59925342-59925361 | None:intergenic | 65.0% | |
TCTTCCTTGCCGGCCTCGAG+TGG | - | chr2_2:59925343-59925362 | None:intergenic | 65.0% | |
GTGGTACGGGTTCGGGTACG+CGG | - | chr2_2:59926230-59926249 | None:intergenic | 65.0% | |
CCGGTACGTGGTACGGGTTC+GGG | - | chr2_2:59926237-59926256 | None:intergenic | 65.0% | |
CCCGAACCCGTACCACGTAC+CGG | + | chr2_2:59926234-59926253 | Msa0261480:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_2 | gene | 59921731 | 59927429 | 59921731 | ID=Msa0261480;Name=Msa0261480 |
chr2_2 | mRNA | 59921731 | 59927429 | 59921731 | ID=Msa0261480-mRNA-1;Parent=Msa0261480;Name=Msa0261480-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|1|0|0|3|0|240 |
chr2_2 | exon | 59921731 | 59921974 | 59921731 | ID=Msa0261480-mRNA-1:exon:18458;Parent=Msa0261480-mRNA-1 |
chr2_2 | exon | 59923777 | 59924008 | 59923777 | ID=Msa0261480-mRNA-1:exon:18459;Parent=Msa0261480-mRNA-1 |
chr2_2 | exon | 59927183 | 59927429 | 59927183 | ID=Msa0261480-mRNA-1:exon:18460;Parent=Msa0261480-mRNA-1 |
chr2_2 | CDS | 59921731 | 59921974 | 59921731 | ID=Msa0261480-mRNA-1:cds;Parent=Msa0261480-mRNA-1 |
chr2_2 | CDS | 59923777 | 59924008 | 59923777 | ID=Msa0261480-mRNA-1:cds;Parent=Msa0261480-mRNA-1 |
chr2_2 | CDS | 59927183 | 59927429 | 59927183 | ID=Msa0261480-mRNA-1:cds;Parent=Msa0261480-mRNA-1 |
Gene Sequence |
Protein sequence |