Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1422480 | sp|Q9LTA2|AHL17_ARATH | 64.783 | 230 | 74 | 5 | 78 | 301 | 48 | 276 | 7.35e-97 | 289 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1422480 | G7J554 | 92.079 | 303 | 9 | 5 | 1 | 301 | 1 | 290 | 0.0 | 526 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1363280 | Msa1422480 | -0.805753 | 1.146588e-49 | -8.615850e-47 |
| Msa1382380 | Msa1422480 | -0.800537 | 1.375713e-48 | -8.615850e-47 |
| Msa1407370 | Msa1422480 | 0.831692 | 1.445501e-55 | -8.615850e-47 |
| Msa0626920 | Msa1422480 | 0.813895 | 2.030535e-51 | -8.615850e-47 |
| Msa0776560 | Msa1422480 | 0.811092 | 8.322411e-51 | -8.615850e-47 |
| Msa0832760 | Msa1422480 | 0.811537 | 6.663945e-51 | -8.615850e-47 |
| Msa0186540 | Msa1422480 | 0.811006 | 8.686379e-51 | -8.615850e-47 |
| Msa1269440 | Msa1422480 | 0.801651 | 8.142112e-49 | -8.615850e-47 |
| Msa1026970 | Msa1422480 | 0.817644 | 2.963056e-52 | -8.615850e-47 |
| Msa0256570 | Msa1422480 | 0.805297 | 1.429134e-49 | -8.615850e-47 |
| Msa0307380 | Msa1422480 | 0.811098 | 8.298906e-51 | -8.615850e-47 |
| Msa0315210 | Msa1422480 | 0.806105 | 9.667121e-50 | -8.615850e-47 |
| Msa1111900 | Msa1422480 | 0.825064 | 5.746995e-54 | -8.615850e-47 |
| Msa1133760 | Msa1422480 | 0.838177 | 3.357237e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1422480 | MtrunA17_Chr3g0133051 | 92.079 | 303 | 9 | 5 | 1 | 301 | 1 | 290 | 0.0 | 526 |
| Msa1422480 | MtrunA17_Chr5g0427311 | 62.931 | 232 | 71 | 5 | 41 | 262 | 2 | 228 | 8.74e-74 | 226 |
| Msa1422480 | MtrunA17_Chr8g0351651 | 50.500 | 200 | 95 | 2 | 56 | 255 | 56 | 251 | 5.49e-47 | 160 |
| Msa1422480 | MtrunA17_Chr1g0168121 | 56.173 | 162 | 67 | 2 | 78 | 239 | 34 | 191 | 7.08e-46 | 156 |
| Msa1422480 | MtrunA17_Chr5g0398531 | 53.659 | 164 | 72 | 2 | 81 | 244 | 95 | 254 | 7.75e-46 | 157 |
| Msa1422480 | MtrunA17_Chr1g0190051 | 49.451 | 182 | 85 | 3 | 79 | 257 | 64 | 241 | 6.59e-43 | 149 |
| Msa1422480 | MtrunA17_Chr5g0443311 | 48.039 | 204 | 81 | 7 | 56 | 243 | 10 | 204 | 9.01e-42 | 145 |
| Msa1422480 | MtrunA17_Chr3g0112131 | 44.279 | 201 | 94 | 4 | 96 | 282 | 89 | 285 | 1.63e-39 | 140 |
| Msa1422480 | MtrunA17_Chr4g0054651 | 54.902 | 153 | 61 | 3 | 93 | 243 | 83 | 229 | 5.23e-38 | 136 |
| Msa1422480 | MtrunA17_Chr7g0250031 | 53.642 | 151 | 62 | 3 | 95 | 243 | 66 | 210 | 5.98e-38 | 135 |
| Msa1422480 | MtrunA17_Chr3g0094471 | 41.379 | 174 | 78 | 4 | 86 | 236 | 55 | 227 | 2.78e-35 | 129 |
| Msa1422480 | MtrunA17_Chr1g0175001 | 36.073 | 219 | 118 | 7 | 53 | 251 | 44 | 260 | 2.17e-30 | 115 |
| Msa1422480 | MtrunA17_Chr5g0441851 | 36.667 | 180 | 103 | 4 | 67 | 237 | 58 | 235 | 2.42e-30 | 114 |
| Msa1422480 | MtrunA17_Chr5g0435681 | 46.528 | 144 | 73 | 2 | 96 | 239 | 99 | 238 | 2.04e-29 | 114 |
| Msa1422480 | MtrunA17_Chr1g0161621 | 38.068 | 176 | 95 | 5 | 73 | 237 | 88 | 260 | 1.32e-27 | 108 |
| Msa1422480 | MtrunA17_Chr4g0028181 | 37.912 | 182 | 96 | 6 | 85 | 252 | 50 | 228 | 3.12e-26 | 104 |
| Msa1422480 | MtrunA17_Chr4g0028211 | 38.037 | 163 | 91 | 5 | 85 | 239 | 35 | 195 | 3.01e-25 | 101 |
| Msa1422480 | MtrunA17_Chr1g0186441 | 32.973 | 185 | 69 | 2 | 78 | 257 | 57 | 191 | 1.85e-24 | 99.4 |
| Msa1422480 | MtrunA17_Chr5g0441901 | 34.783 | 161 | 94 | 4 | 85 | 237 | 74 | 231 | 2.84e-23 | 95.5 |
| Msa1422480 | MtrunA17_Chr5g0397551 | 36.875 | 160 | 96 | 3 | 73 | 229 | 91 | 248 | 4.01e-23 | 97.1 |
| Msa1422480 | MtrunA17_Chr6g0476061 | 38.298 | 141 | 75 | 3 | 108 | 237 | 118 | 257 | 2.77e-22 | 94.7 |
| Msa1422480 | MtrunA17_Chr1g0179461 | 34.884 | 129 | 84 | 0 | 113 | 241 | 145 | 273 | 3.93e-20 | 89.4 |
| Msa1422480 | MtrunA17_Chr5g0441441 | 35.669 | 157 | 91 | 3 | 86 | 236 | 50 | 202 | 4.71e-19 | 84.0 |
| Msa1422480 | MtrunA17_Chr1g0188211 | 42.735 | 117 | 65 | 2 | 113 | 229 | 134 | 248 | 4.93e-19 | 85.9 |
| Msa1422480 | MtrunA17_Chr7g0247431 | 38.095 | 147 | 87 | 2 | 86 | 229 | 127 | 272 | 2.42e-18 | 84.0 |
| Msa1422480 | MtrunA17_Chr8g0374021 | 33.083 | 133 | 77 | 3 | 113 | 237 | 1 | 129 | 1.97e-17 | 77.8 |
| Msa1422480 | MtrunA17_Chr4g0054661 | 32.692 | 156 | 99 | 3 | 75 | 229 | 106 | 256 | 5.34e-17 | 80.1 |
| Msa1422480 | MtrunA17_Chr8g0349091 | 37.013 | 154 | 93 | 2 | 79 | 229 | 118 | 270 | 2.46e-15 | 75.5 |
| Msa1422480 | MtrunA17_Chr1g0190011 | 37.815 | 119 | 67 | 4 | 117 | 233 | 113 | 226 | 1.14e-14 | 73.2 |
| Msa1422480 | MtrunA17_Chr8g0386741 | 32.000 | 125 | 83 | 2 | 105 | 229 | 158 | 280 | 1.62e-14 | 73.2 |
| Msa1422480 | MtrunA17_Chr7g0245841 | 36.957 | 92 | 57 | 1 | 115 | 206 | 129 | 219 | 3.36e-14 | 72.0 |
| Msa1422480 | MtrunA17_Chr8g0351761 | 40.000 | 120 | 70 | 2 | 111 | 229 | 140 | 258 | 6.00e-14 | 71.6 |
| Msa1422480 | MtrunA17_Chr4g0027371 | 39.669 | 121 | 69 | 3 | 113 | 230 | 19 | 138 | 7.21e-14 | 70.1 |
| Msa1422480 | MtrunA17_Chr5g0398621 | 32.824 | 131 | 84 | 2 | 113 | 240 | 97 | 226 | 1.12e-13 | 69.3 |
| Msa1422480 | MtrunA17_Chr4g0027331 | 38.182 | 110 | 64 | 3 | 113 | 219 | 19 | 127 | 5.54e-13 | 65.1 |
| Msa1422480 | MtrunA17_Chr4g0034501 | 35.043 | 117 | 71 | 3 | 85 | 198 | 33 | 147 | 5.83e-13 | 65.9 |
| Msa1422480 | MtrunA17_Chr4g0027351 | 40.909 | 110 | 57 | 5 | 113 | 219 | 19 | 123 | 4.33e-12 | 62.8 |
| Msa1422480 | MtrunA17_Chr4g0056761 | 39.831 | 118 | 69 | 2 | 113 | 229 | 144 | 260 | 1.80e-11 | 63.9 |
| Msa1422480 | MtrunA17_Chr7g0274821 | 35.897 | 117 | 71 | 2 | 113 | 229 | 143 | 255 | 1.95e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1422480 | AT5G49700.1 | 64.783 | 230 | 74 | 5 | 78 | 301 | 48 | 276 | 7.47e-98 | 289 |
| Msa1422480 | AT1G14490.1 | 55.605 | 223 | 79 | 6 | 82 | 301 | 1 | 206 | 3.67e-70 | 216 |
| Msa1422480 | AT1G14490.2 | 56.250 | 224 | 78 | 7 | 81 | 301 | 19 | 225 | 3.85e-70 | 217 |
| Msa1422480 | AT4G14465.1 | 53.073 | 179 | 78 | 3 | 78 | 254 | 59 | 233 | 1.34e-47 | 161 |
| Msa1422480 | AT1G76500.1 | 49.390 | 164 | 72 | 2 | 86 | 241 | 72 | 232 | 6.50e-47 | 160 |
| Msa1422480 | AT2G42940.1 | 46.000 | 200 | 98 | 4 | 46 | 245 | 19 | 208 | 4.38e-44 | 151 |
| Msa1422480 | AT2G45430.1 | 49.444 | 180 | 82 | 3 | 84 | 257 | 87 | 263 | 1.08e-43 | 152 |
| Msa1422480 | AT4G22810.1 | 52.147 | 163 | 73 | 2 | 83 | 243 | 102 | 261 | 2.93e-43 | 151 |
| Msa1422480 | AT2G35270.1 | 54.321 | 162 | 66 | 3 | 84 | 243 | 76 | 231 | 4.19e-43 | 149 |
| Msa1422480 | AT4G12050.1 | 50.311 | 161 | 77 | 1 | 83 | 243 | 115 | 272 | 1.34e-42 | 149 |
| Msa1422480 | AT3G60870.1 | 49.664 | 149 | 69 | 2 | 86 | 234 | 59 | 201 | 1.41e-40 | 142 |
| Msa1422480 | AT3G04570.1 | 49.704 | 169 | 75 | 2 | 78 | 239 | 72 | 237 | 1.43e-40 | 144 |
| Msa1422480 | AT4G35390.1 | 51.634 | 153 | 70 | 2 | 86 | 237 | 63 | 212 | 1.96e-37 | 135 |
| Msa1422480 | AT4G17800.1 | 53.642 | 151 | 62 | 3 | 95 | 243 | 91 | 235 | 1.42e-35 | 130 |
| Msa1422480 | AT1G20900.1 | 47.727 | 176 | 81 | 2 | 72 | 239 | 72 | 244 | 1.48e-33 | 125 |
| Msa1422480 | AT3G55560.1 | 40.639 | 219 | 117 | 4 | 93 | 301 | 95 | 310 | 8.31e-30 | 115 |
| Msa1422480 | AT1G63470.1 | 39.189 | 148 | 83 | 4 | 86 | 229 | 147 | 291 | 1.79e-25 | 104 |
| Msa1422480 | AT2G33620.1 | 37.888 | 161 | 93 | 3 | 69 | 229 | 125 | 278 | 3.23e-23 | 98.2 |
| Msa1422480 | AT2G33620.4 | 37.888 | 161 | 93 | 3 | 69 | 229 | 125 | 278 | 3.23e-23 | 98.2 |
| Msa1422480 | AT2G33620.2 | 37.888 | 161 | 93 | 3 | 69 | 229 | 125 | 278 | 3.23e-23 | 98.2 |
| Msa1422480 | AT2G33620.3 | 37.888 | 161 | 93 | 3 | 69 | 229 | 125 | 278 | 3.23e-23 | 98.2 |
| Msa1422480 | AT2G45850.1 | 36.735 | 147 | 89 | 2 | 86 | 229 | 132 | 277 | 1.32e-22 | 96.3 |
| Msa1422480 | AT2G45850.2 | 36.735 | 147 | 89 | 2 | 86 | 229 | 132 | 277 | 1.32e-22 | 96.3 |
| Msa1422480 | AT5G62260.2 | 41.667 | 120 | 69 | 1 | 118 | 237 | 165 | 283 | 1.65e-22 | 95.1 |
| Msa1422480 | AT5G62260.1 | 44.643 | 112 | 61 | 1 | 118 | 229 | 165 | 275 | 6.76e-22 | 95.1 |
| Msa1422480 | AT5G62260.3 | 44.643 | 112 | 61 | 1 | 118 | 229 | 165 | 275 | 6.76e-22 | 95.1 |
| Msa1422480 | AT5G51590.1 | 42.735 | 117 | 66 | 1 | 113 | 229 | 178 | 293 | 1.62e-21 | 94.4 |
| Msa1422480 | AT4G17950.1 | 37.671 | 146 | 88 | 2 | 85 | 229 | 195 | 338 | 2.06e-21 | 94.0 |
| Msa1422480 | AT2G45850.3 | 35.135 | 148 | 92 | 2 | 86 | 230 | 132 | 278 | 2.84e-21 | 91.7 |
| Msa1422480 | AT4G12080.1 | 41.880 | 117 | 67 | 1 | 113 | 229 | 170 | 285 | 3.70e-21 | 92.4 |
| Msa1422480 | AT4G25320.1 | 41.026 | 117 | 68 | 1 | 113 | 229 | 166 | 281 | 2.66e-20 | 90.5 |
| Msa1422480 | AT3G04590.2 | 34.177 | 158 | 89 | 5 | 113 | 268 | 171 | 315 | 1.54e-18 | 85.5 |
| Msa1422480 | AT3G04590.1 | 34.722 | 144 | 81 | 4 | 113 | 256 | 171 | 301 | 3.04e-18 | 83.6 |
| Msa1422480 | AT1G63480.2 | 31.973 | 147 | 95 | 3 | 86 | 229 | 130 | 274 | 2.19e-17 | 82.0 |
| Msa1422480 | AT1G63480.1 | 31.973 | 147 | 95 | 3 | 86 | 229 | 130 | 274 | 2.19e-17 | 82.0 |
| Msa1422480 | AT1G63480.5 | 31.973 | 147 | 95 | 3 | 86 | 229 | 124 | 268 | 2.58e-17 | 81.6 |
| Msa1422480 | AT1G63480.7 | 31.973 | 147 | 95 | 3 | 86 | 229 | 124 | 268 | 2.58e-17 | 81.6 |
| Msa1422480 | AT1G63480.4 | 31.973 | 147 | 95 | 3 | 86 | 229 | 124 | 268 | 2.58e-17 | 81.6 |
| Msa1422480 | AT1G63480.3 | 31.973 | 147 | 95 | 3 | 86 | 229 | 124 | 268 | 2.58e-17 | 81.6 |
| Msa1422480 | AT1G63480.6 | 31.973 | 147 | 95 | 3 | 86 | 229 | 124 | 268 | 2.58e-17 | 81.6 |
| Msa1422480 | AT5G46640.1 | 39.583 | 144 | 84 | 2 | 86 | 229 | 155 | 295 | 1.22e-16 | 80.1 |
| Msa1422480 | AT3G61310.1 | 34.014 | 147 | 93 | 2 | 86 | 229 | 134 | 279 | 1.74e-15 | 76.3 |
| Msa1422480 | AT4G22770.2 | 40.426 | 94 | 55 | 1 | 113 | 206 | 150 | 242 | 2.28e-15 | 75.9 |
| Msa1422480 | AT4G22770.1 | 40.426 | 94 | 55 | 1 | 113 | 206 | 150 | 242 | 2.28e-15 | 75.9 |
| Msa1422480 | AT4G00200.2 | 41.026 | 117 | 68 | 1 | 113 | 229 | 123 | 238 | 3.01e-13 | 69.3 |
| Msa1422480 | AT4G00200.1 | 41.026 | 117 | 68 | 1 | 113 | 229 | 123 | 238 | 3.01e-13 | 69.3 |
Find 92 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGGACTCATCACAGTTTC+TGG | 0.190886 | tig0025390:-19997 | Msa1422480:intergenic |
| GGATCCCTTGTTATGATAAT+AGG | 0.239719 | tig0025390:-19976 | Msa1422480:intergenic |
| CCACAAACTTCTAGAATAAA+AGG | 0.260251 | tig0025390:-20015 | Msa1422480:intergenic |
| GGAAACTCGCAGAATGTTTC+CGG | 0.298825 | tig0025390:+20435 | Msa1422480:CDS |
| TTAATAATCCGTCGTATCAT+AGG | 0.298896 | tig0025390:+20358 | Msa1422480:CDS |
| TGCCGTCGTCTGATGTGATT+TGG | 0.299149 | tig0025390:+20523 | Msa1422480:CDS |
| GTTATGATAATAGGTGGTTT+TGG | 0.312776 | tig0025390:-19967 | Msa1422480:intergenic |
| AACTTCTCGATCTCGCTTGC+TGG | 0.338896 | tig0025390:+20255 | Msa1422480:CDS |
| TGTTTCATTTCCTCCTTTGT+TGG | 0.342379 | tig0025390:-19710 | Msa1422480:intergenic |
| TTTAGTCGTCGCAAGAATAT+TGG | 0.345892 | tig0025390:+20069 | Msa1422480:CDS |
| GTTTCATTTCCTCCTTTGTT+GGG | 0.357925 | tig0025390:-19709 | Msa1422480:intergenic |
| GCACCGTCGCCGGAGGAGTT+AGG | 0.388272 | tig0025390:-19889 | Msa1422480:intergenic |
| TGAAAAGTAACGGTGGTTCC+TGG | 0.393326 | tig0025390:-20156 | Msa1422480:intergenic |
| AACTCGGTGTCTGGCGGTGG+TGG | 0.406817 | tig0025390:+20408 | Msa1422480:CDS |
| ATTGTTGGAGGAATTGTTGC+TGG | 0.417001 | tig0025390:+20291 | Msa1422480:CDS |
| AAAGTTGAAAAGGGTGAAAT+GGG | 0.433697 | tig0025390:-19789 | Msa1422480:intergenic |
| GCCGTCGTCTGATGTGATTT+GGG | 0.434578 | tig0025390:+20524 | Msa1422480:CDS |
| GTTTCCGGTGCGGTGGATAG+TGG | 0.435318 | tig0025390:+20450 | Msa1422480:CDS |
| GAAAGTTGAAAAGGGTGAAA+TGG | 0.439544 | tig0025390:-19790 | Msa1422480:intergenic |
| GAAGGTGGAAACTCGGTGTC+TGG | 0.443333 | tig0025390:+20399 | Msa1422480:CDS |
| TCATGTTGTGAAAGTTGAAA+AGG | 0.449205 | tig0025390:-19799 | None:intergenic |
| GAAAATTGATTTGTAATGAA+AGG | 0.450736 | tig0025390:+19658 | None:intergenic |
| GGAAACTCGGTGTCTGGCGG+TGG | 0.453301 | tig0025390:+20405 | Msa1422480:CDS |
| GTGTCTGGCGGTGGTGGTGA+TGG | 0.453913 | tig0025390:+20414 | Msa1422480:CDS |
| GTATCATAGGCTTCCGTTGG+AGG | 0.456186 | tig0025390:+20371 | Msa1422480:CDS |
| TCAACAACACGGTGTTTCTC+CGG | 0.459031 | tig0025390:+20221 | Msa1422480:CDS |
| CTCGATAGTTGCACCGTCGC+CGG | 0.486648 | tig0025390:-19899 | Msa1422480:intergenic |
| GATAGTGGACAAGGTGGTGG+TGG | 0.487211 | tig0025390:+20465 | Msa1422480:CDS |
| GTGGATAGTGGACAAGGTGG+TGG | 0.489300 | tig0025390:+20462 | Msa1422480:CDS |
| CACCGCCGCTGTTGTTGTTG+TGG | 0.503700 | tig0025390:-19849 | Msa1422480:intergenic |
| GAGCCAGGTGGACGTCCTCT+CGG | 0.506849 | tig0025390:-19934 | Msa1422480:intergenic |
| CATGTTGTGAAAGTTGAAAA+GGG | 0.512252 | tig0025390:-19798 | Msa1422480:intergenic |
| GCTGGAAATTTGATAGCTGC+AGG | 0.518520 | tig0025390:+20309 | Msa1422480:CDS |
| CCACCTTCATCTTCCTCCAA+CGG | 0.522174 | tig0025390:-20384 | Msa1422480:intergenic |
| TGGTTATCATCTTCACCGAT+TGG | 0.527808 | tig0025390:-19829 | Msa1422480:intergenic |
| CACAACAACAACAGCGGCGG+TGG | 0.528718 | tig0025390:+19850 | Msa1422480:CDS |
| GTGGTTCCTGGTGTAGTTGA+AGG | 0.529406 | tig0025390:-20144 | Msa1422480:intergenic |
| GAGAAGTTACTCGGAATCGC+CGG | 0.531540 | tig0025390:-20240 | Msa1422480:intergenic |
| AGCTTTGAGAATAGTAAAGA+AGG | 0.533048 | tig0025390:-19739 | Msa1422480:intergenic |
| GGACCACAAGGACAGATTGT+TGG | 0.535223 | tig0025390:+20276 | Msa1422480:CDS |
| GTCGTATCATAGGCTTCCGT+TGG | 0.536000 | tig0025390:+20368 | Msa1422480:CDS |
| CGGCCGAGAGGACGTCCACC+TGG | 0.536597 | tig0025390:+19931 | Msa1422480:CDS |
| ATCTCGCTTGCTGGACCACA+AGG | 0.546742 | tig0025390:+20264 | Msa1422480:CDS |
| CGTCAACCTTCAACTACACC+AGG | 0.548835 | tig0025390:+20138 | Msa1422480:CDS |
| CAACATGAATGTCAACCAAT+CGG | 0.550572 | tig0025390:+19814 | Msa1422480:CDS |
| CTTCCGTTGGAGGAAGATGA+AGG | 0.556150 | tig0025390:+20381 | Msa1422480:CDS |
| TCCCTTGTTATGATAATAGG+TGG | 0.559033 | tig0025390:-19973 | Msa1422480:intergenic |
| GGAGTTAGGTTTCTGAGCGG+TGG | 0.570330 | tig0025390:-19875 | Msa1422480:intergenic |
| AGCGAGATCGAGAAGTTACT+CGG | 0.575848 | tig0025390:-20249 | Msa1422480:intergenic |
| AAACCTAACTCCTCCGGCGA+CGG | 0.577152 | tig0025390:+19886 | Msa1422480:CDS |
| GGAAGATGAAGGTGGAAACT+CGG | 0.580324 | tig0025390:+20392 | Msa1422480:CDS |
| CCACAAGGACAGATTGTTGG+AGG | 0.587023 | tig0025390:+20279 | Msa1422480:CDS |
| GAGAATAGTAAAGAAGGTGG+TGG | 0.587355 | tig0025390:-19733 | Msa1422480:intergenic |
| AACCACCTATTATCATAACA+AGG | 0.589057 | tig0025390:+19971 | Msa1422480:CDS |
| GCAGAATGTTTCCGGTGCGG+TGG | 0.590009 | tig0025390:+20443 | Msa1422480:CDS |
| GGAGAAACACCGTGTTGTTG+AGG | 0.593344 | tig0025390:-20219 | Msa1422480:intergenic |
| TTTGAGAATAGTAAAGAAGG+TGG | 0.593545 | tig0025390:-19736 | Msa1422480:intergenic |
| TTTATTCTAGAAGTTTGTGG+TGG | 0.595031 | tig0025390:+20018 | Msa1422480:CDS |
| TGTGAATGATGATATCAGTA+AGG | 0.595587 | tig0025390:-20570 | Msa1422480:intergenic |
| TGATGATATCAGTAAGGTGG+TGG | 0.598283 | tig0025390:-20564 | Msa1422480:intergenic |
| CGGCGACGGTGCAACTATCG+AGG | 0.613699 | tig0025390:+19900 | Msa1422480:CDS |
| GGTGGTGGTGGTCTAGCAGA+CGG | 0.615762 | tig0025390:-20549 | Msa1422480:intergenic |
| AAATTTGATAGCTGCAGGGA+CGG | 0.615889 | tig0025390:+20314 | Msa1422480:CDS |
| GATAGTTGCACCGTCGCCGG+AGG | 0.619215 | tig0025390:-19896 | Msa1422480:intergenic |
| TTGTCCACTATCCACCGCAC+CGG | 0.619515 | tig0025390:-20454 | Msa1422480:intergenic |
| GGTGGTGGTGGCGAGTCGTG+TGG | 0.623703 | tig0025390:+20477 | Msa1422480:CDS |
| CCTCCAACAATCTGTCCTTG+TGG | 0.630169 | tig0025390:-20279 | Msa1422480:intergenic |
| TCTTCAAATCCCAACAAAGG+AGG | 0.632204 | tig0025390:+19700 | Msa1422480:CDS |
| CTGGAAATTTGATAGCTGCA+GGG | 0.635730 | tig0025390:+20310 | Msa1422480:CDS |
| GCTCAGAAACCTAACTCCTC+CGG | 0.637134 | tig0025390:+19880 | Msa1422480:CDS |
| TGATATCAGTAAGGTGGTGG+TGG | 0.640274 | tig0025390:-20561 | Msa1422480:intergenic |
| GGTGCGGTGGATAGTGGACA+AGG | 0.641333 | tig0025390:+20456 | Msa1422480:CDS |
| GTGTTGTTGAGGAACAAAAG+TGG | 0.643128 | tig0025390:-20208 | Msa1422480:intergenic |
| TTATAGAAAGAATATCAAAA+CGG | 0.643632 | tig0025390:-20182 | Msa1422480:intergenic |
| AAAACGGCCGTGAAAAGTAA+CGG | 0.644123 | tig0025390:-20166 | Msa1422480:intergenic |
| GGTGGAAACTCGGTGTCTGG+CGG | 0.649590 | tig0025390:+20402 | Msa1422480:CDS |
| ACCACCTATTATCATAACAA+GGG | 0.655016 | tig0025390:+19972 | Msa1422480:CDS |
| AACCACAACAACAACAGCGG+CGG | 0.670607 | tig0025390:+19847 | Msa1422480:CDS |
| CATTCTTCAAATCCCAACAA+AGG | 0.671656 | tig0025390:+19697 | Msa1422480:CDS |
| CTCGCAGAATGTTTCCGGTG+CGG | 0.677861 | tig0025390:+20440 | Msa1422480:CDS |
| AACGGAAGCCTATGATACGA+CGG | 0.681608 | tig0025390:-20366 | Msa1422480:intergenic |
| AAGTTGAAAAGGGTGAAATG+GGG | 0.684741 | tig0025390:-19788 | Msa1422480:intergenic |
| GCGGTGGATAGTGGACAAGG+TGG | 0.689319 | tig0025390:+20459 | Msa1422480:CDS |
| GAATGATGATATCAGTAAGG+TGG | 0.697309 | tig0025390:-20567 | Msa1422480:intergenic |
| GCCCAAATCACATCAGACGA+CGG | 0.700997 | tig0025390:-20525 | Msa1422480:intergenic |
| TTGTTGAGGAACAAAAGTGG+CGG | 0.701935 | tig0025390:-20205 | Msa1422480:intergenic |
| CAACTATCGAGGTTTCAAGA+CGG | 0.720254 | tig0025390:+19911 | Msa1422480:CDS |
| GATAACCACAACAACAACAG+CGG | 0.730416 | tig0025390:+19844 | Msa1422480:CDS |
| GAGGTTTCAAGACGGCCGAG+AGG | 0.733357 | tig0025390:+19919 | Msa1422480:CDS |
| CCGTTGGAGGAAGATGAAGG+TGG | 0.735117 | tig0025390:+20384 | Msa1422480:CDS |
| ACGGCCGTGAAAAGTAACGG+TGG | 0.750019 | tig0025390:-20163 | Msa1422470:intergenic |
| GGAGGAGTTAGGTTTCTGAG+CGG | 0.768047 | tig0025390:-19878 | Msa1422470:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAGAAAGAATATCAAAA+CGG | - | tig0025390:20185-20204 | Msa1422480:intergenic | 15.0% |
| !! | TTATAGAAAGAATATCAAAA+CGG | - | tig0025390:20185-20204 | Msa1422480:intergenic | 15.0% |
| !!! | ATTGGTTTATGTGTTTTAAC+TGG | + | tig0025390:20087-20106 | Msa1422480:CDS | 25.0% |
| !!! | ATTGGTTTATGTGTTTTAAC+TGG | + | tig0025390:20087-20106 | Msa1422480:CDS | 25.0% |
| TTTGAGAATAGTAAAGAAGG+TGG | - | tig0025390:19739-19758 | Msa1422480:intergenic | 30.0% | |
| !! | AGCTTTGAGAATAGTAAAGA+AGG | - | tig0025390:19742-19761 | Msa1422480:intergenic | 30.0% |
| AAAGTTGAAAAGGGTGAAAT+GGG | - | tig0025390:19792-19811 | Msa1422480:intergenic | 30.0% | |
| CATGTTGTGAAAGTTGAAAA+GGG | - | tig0025390:19801-19820 | Msa1422480:intergenic | 30.0% | |
| TCATGTTGTGAAAGTTGAAA+AGG | - | tig0025390:19802-19821 | Msa1422480:intergenic | 30.0% | |
| ! | GTTATGATAATAGGTGGTTT+TGG | - | tig0025390:19970-19989 | Msa1422480:intergenic | 30.0% |
| AACCACCTATTATCATAACA+AGG | + | tig0025390:19971-19990 | Msa1422480:CDS | 30.0% | |
| ACCACCTATTATCATAACAA+GGG | + | tig0025390:19972-19991 | Msa1422480:CDS | 30.0% | |
| !! | CCACAAACTTCTAGAATAAA+AGG | - | tig0025390:20018-20037 | Msa1422480:intergenic | 30.0% |
| !! | CCTTTTATTCTAGAAGTTTG+TGG | + | tig0025390:20015-20034 | Msa1422480:CDS | 30.0% |
| ! | TTTATTCTAGAAGTTTGTGG+TGG | + | tig0025390:20018-20037 | Msa1422480:CDS | 30.0% |
| !!! | TTATGTGTTTTAACTGGTTC+AGG | + | tig0025390:20093-20112 | Msa1422480:CDS | 30.0% |
| TTAATAATCCGTCGTATCAT+AGG | + | tig0025390:20358-20377 | Msa1422480:CDS | 30.0% | |
| TTTGAGAATAGTAAAGAAGG+TGG | - | tig0025390:19739-19758 | Msa1422480:intergenic | 30.0% | |
| !! | AGCTTTGAGAATAGTAAAGA+AGG | - | tig0025390:19742-19761 | Msa1422480:intergenic | 30.0% |
| AAAGTTGAAAAGGGTGAAAT+GGG | - | tig0025390:19792-19811 | Msa1422480:intergenic | 30.0% | |
| CATGTTGTGAAAGTTGAAAA+GGG | - | tig0025390:19801-19820 | Msa1422480:intergenic | 30.0% | |
| TCATGTTGTGAAAGTTGAAA+AGG | - | tig0025390:19802-19821 | Msa1422480:intergenic | 30.0% | |
| ! | GTTATGATAATAGGTGGTTT+TGG | - | tig0025390:19970-19989 | Msa1422480:intergenic | 30.0% |
| AACCACCTATTATCATAACA+AGG | + | tig0025390:19971-19990 | Msa1422480:CDS | 30.0% | |
| ACCACCTATTATCATAACAA+GGG | + | tig0025390:19972-19991 | Msa1422480:CDS | 30.0% | |
| !! | CCACAAACTTCTAGAATAAA+AGG | - | tig0025390:20018-20037 | Msa1422480:intergenic | 30.0% |
| !! | CCTTTTATTCTAGAAGTTTG+TGG | + | tig0025390:20015-20034 | Msa1422480:CDS | 30.0% |
| ! | TTTATTCTAGAAGTTTGTGG+TGG | + | tig0025390:20018-20037 | Msa1422480:CDS | 30.0% |
| !!! | TTATGTGTTTTAACTGGTTC+AGG | + | tig0025390:20093-20112 | Msa1422480:CDS | 30.0% |
| TTAATAATCCGTCGTATCAT+AGG | + | tig0025390:20358-20377 | Msa1422480:CDS | 30.0% | |
| CATTCTTCAAATCCCAACAA+AGG | + | tig0025390:19697-19716 | Msa1422480:CDS | 35.0% | |
| GTTTCATTTCCTCCTTTGTT+GGG | - | tig0025390:19712-19731 | Msa1422480:intergenic | 35.0% | |
| TGTTTCATTTCCTCCTTTGT+TGG | - | tig0025390:19713-19732 | Msa1422480:intergenic | 35.0% | |
| AAGTTGAAAAGGGTGAAATG+GGG | - | tig0025390:19791-19810 | Msa1422480:intergenic | 35.0% | |
| GAAAGTTGAAAAGGGTGAAA+TGG | - | tig0025390:19793-19812 | Msa1422480:intergenic | 35.0% | |
| CAACATGAATGTCAACCAAT+CGG | + | tig0025390:19814-19833 | Msa1422480:CDS | 35.0% | |
| !!! | TTTGGTTTGTTTTTTGAGCC+AGG | - | tig0025390:19952-19971 | Msa1422480:intergenic | 35.0% |
| ! | TCCCTTGTTATGATAATAGG+TGG | - | tig0025390:19976-19995 | Msa1422480:intergenic | 35.0% |
| ! | GGATCCCTTGTTATGATAAT+AGG | - | tig0025390:19979-19998 | Msa1422480:intergenic | 35.0% |
| TTTAGTCGTCGCAAGAATAT+TGG | + | tig0025390:20069-20088 | Msa1422480:CDS | 35.0% | |
| ! | ACTTTTGTTCCTCAACAACA+CGG | + | tig0025390:20210-20229 | Msa1422480:CDS | 35.0% |
| CATTCTTCAAATCCCAACAA+AGG | + | tig0025390:19697-19716 | Msa1422480:CDS | 35.0% | |
| GTTTCATTTCCTCCTTTGTT+GGG | - | tig0025390:19712-19731 | Msa1422480:intergenic | 35.0% | |
| TGTTTCATTTCCTCCTTTGT+TGG | - | tig0025390:19713-19732 | Msa1422480:intergenic | 35.0% | |
| AAGTTGAAAAGGGTGAAATG+GGG | - | tig0025390:19791-19810 | Msa1422480:intergenic | 35.0% | |
| GAAAGTTGAAAAGGGTGAAA+TGG | - | tig0025390:19793-19812 | Msa1422480:intergenic | 35.0% | |
| CAACATGAATGTCAACCAAT+CGG | + | tig0025390:19814-19833 | Msa1422480:CDS | 35.0% | |
| !!! | TTTGGTTTGTTTTTTGAGCC+AGG | - | tig0025390:19952-19971 | Msa1422480:intergenic | 35.0% |
| ! | TCCCTTGTTATGATAATAGG+TGG | - | tig0025390:19976-19995 | Msa1422480:intergenic | 35.0% |
| ! | GGATCCCTTGTTATGATAAT+AGG | - | tig0025390:19979-19998 | Msa1422480:intergenic | 35.0% |
| TTTAGTCGTCGCAAGAATAT+TGG | + | tig0025390:20069-20088 | Msa1422480:CDS | 35.0% | |
| ! | ACTTTTGTTCCTCAACAACA+CGG | + | tig0025390:20210-20229 | Msa1422480:CDS | 35.0% |
| TCTTCAAATCCCAACAAAGG+AGG | + | tig0025390:19700-19719 | Msa1422480:CDS | 40.0% | |
| GAGAATAGTAAAGAAGGTGG+TGG | - | tig0025390:19736-19755 | Msa1422480:intergenic | 40.0% | |
| TGGTTATCATCTTCACCGAT+TGG | - | tig0025390:19832-19851 | Msa1422480:intergenic | 40.0% | |
| GATAACCACAACAACAACAG+CGG | + | tig0025390:19844-19863 | Msa1422480:CDS | 40.0% | |
| CAACTATCGAGGTTTCAAGA+CGG | + | tig0025390:19911-19930 | Msa1422480:CDS | 40.0% | |
| AAAGGACTCATCACAGTTTC+TGG | - | tig0025390:20000-20019 | Msa1422480:intergenic | 40.0% | |
| AAAACGGCCGTGAAAAGTAA+CGG | - | tig0025390:20169-20188 | Msa1422480:intergenic | 40.0% | |
| TTGTTGAGGAACAAAAGTGG+CGG | - | tig0025390:20208-20227 | Msa1422480:intergenic | 40.0% | |
| ! | GTGTTGTTGAGGAACAAAAG+TGG | - | tig0025390:20211-20230 | Msa1422480:intergenic | 40.0% |
| ATTGTTGGAGGAATTGTTGC+TGG | + | tig0025390:20291-20310 | Msa1422480:CDS | 40.0% | |
| ! | CTGGAAATTTGATAGCTGCA+GGG | + | tig0025390:20310-20329 | Msa1422480:CDS | 40.0% |
| ! | AAATTTGATAGCTGCAGGGA+CGG | + | tig0025390:20314-20333 | Msa1422480:CDS | 40.0% |
| TCTTCAAATCCCAACAAAGG+AGG | + | tig0025390:19700-19719 | Msa1422480:CDS | 40.0% | |
| GAGAATAGTAAAGAAGGTGG+TGG | - | tig0025390:19736-19755 | Msa1422480:intergenic | 40.0% | |
| TGGTTATCATCTTCACCGAT+TGG | - | tig0025390:19832-19851 | Msa1422480:intergenic | 40.0% | |
| GATAACCACAACAACAACAG+CGG | + | tig0025390:19844-19863 | Msa1422480:CDS | 40.0% | |
| CAACTATCGAGGTTTCAAGA+CGG | + | tig0025390:19911-19930 | Msa1422480:CDS | 40.0% | |
| AAAGGACTCATCACAGTTTC+TGG | - | tig0025390:20000-20019 | Msa1422480:intergenic | 40.0% | |
| AAAACGGCCGTGAAAAGTAA+CGG | - | tig0025390:20169-20188 | Msa1422480:intergenic | 40.0% | |
| TTGTTGAGGAACAAAAGTGG+CGG | - | tig0025390:20208-20227 | Msa1422480:intergenic | 40.0% | |
| ! | GTGTTGTTGAGGAACAAAAG+TGG | - | tig0025390:20211-20230 | Msa1422480:intergenic | 40.0% |
| ATTGTTGGAGGAATTGTTGC+TGG | + | tig0025390:20291-20310 | Msa1422480:CDS | 40.0% | |
| ! | CTGGAAATTTGATAGCTGCA+GGG | + | tig0025390:20310-20329 | Msa1422480:CDS | 40.0% |
| ! | AAATTTGATAGCTGCAGGGA+CGG | + | tig0025390:20314-20333 | Msa1422480:CDS | 40.0% |
| !!! | GGTTTGTTTTTTGAGCCAGG+TGG | - | tig0025390:19949-19968 | Msa1422480:intergenic | 45.0% |
| TGAAAAGTAACGGTGGTTCC+TGG | - | tig0025390:20159-20178 | Msa1422480:intergenic | 45.0% | |
| !!! | GGAACCACCGTTACTTTTCA+CGG | + | tig0025390:20159-20178 | Msa1422480:CDS | 45.0% |
| TCAACAACACGGTGTTTCTC+CGG | + | tig0025390:20221-20240 | Msa1422480:CDS | 45.0% | |
| AGCGAGATCGAGAAGTTACT+CGG | - | tig0025390:20252-20271 | Msa1422480:intergenic | 45.0% | |
| ! | GCTGGAAATTTGATAGCTGC+AGG | + | tig0025390:20309-20328 | Msa1422480:CDS | 45.0% |
| AACGGAAGCCTATGATACGA+CGG | - | tig0025390:20369-20388 | Msa1422480:intergenic | 45.0% | |
| GGAAGATGAAGGTGGAAACT+CGG | + | tig0025390:20392-20411 | Msa1422480:CDS | 45.0% | |
| GGAAACTCGCAGAATGTTTC+CGG | + | tig0025390:20435-20454 | Msa1422480:CDS | 45.0% | |
| !!! | GGTTTGTTTTTTGAGCCAGG+TGG | - | tig0025390:19949-19968 | Msa1422480:intergenic | 45.0% |
| TGAAAAGTAACGGTGGTTCC+TGG | - | tig0025390:20159-20178 | Msa1422480:intergenic | 45.0% | |
| !!! | GGAACCACCGTTACTTTTCA+CGG | + | tig0025390:20159-20178 | Msa1422480:CDS | 45.0% |
| TCAACAACACGGTGTTTCTC+CGG | + | tig0025390:20221-20240 | Msa1422480:CDS | 45.0% | |
| AGCGAGATCGAGAAGTTACT+CGG | - | tig0025390:20252-20271 | Msa1422480:intergenic | 45.0% | |
| ! | GCTGGAAATTTGATAGCTGC+AGG | + | tig0025390:20309-20328 | Msa1422480:CDS | 45.0% |
| AACGGAAGCCTATGATACGA+CGG | - | tig0025390:20369-20388 | Msa1422480:intergenic | 45.0% | |
| GGAAGATGAAGGTGGAAACT+CGG | + | tig0025390:20392-20411 | Msa1422480:CDS | 45.0% | |
| GGAAACTCGCAGAATGTTTC+CGG | + | tig0025390:20435-20454 | Msa1422480:CDS | 45.0% | |
| AACCACAACAACAACAGCGG+CGG | + | tig0025390:19847-19866 | Msa1422480:CDS | 50.0% | |
| GGAGGAGTTAGGTTTCTGAG+CGG | - | tig0025390:19881-19900 | Msa1422480:intergenic | 50.0% | |
| GCTCAGAAACCTAACTCCTC+CGG | + | tig0025390:19880-19899 | Msa1422480:CDS | 50.0% | |
| CGTCAACCTTCAACTACACC+AGG | + | tig0025390:20138-20157 | Msa1422480:CDS | 50.0% | |
| GTGGTTCCTGGTGTAGTTGA+AGG | - | tig0025390:20147-20166 | Msa1422480:intergenic | 50.0% | |
| ! | GGAGAAACACCGTGTTGTTG+AGG | - | tig0025390:20222-20241 | Msa1422480:intergenic | 50.0% |
| GAGAAGTTACTCGGAATCGC+CGG | - | tig0025390:20243-20262 | Msa1422480:intergenic | 50.0% | |
| AACTTCTCGATCTCGCTTGC+TGG | + | tig0025390:20255-20274 | Msa1422480:CDS | 50.0% | |
| GGACCACAAGGACAGATTGT+TGG | + | tig0025390:20276-20295 | Msa1422480:CDS | 50.0% | |
| CCTCCAACAATCTGTCCTTG+TGG | - | tig0025390:20282-20301 | Msa1422480:intergenic | 50.0% | |
| CCACAAGGACAGATTGTTGG+AGG | + | tig0025390:20279-20298 | Msa1422480:CDS | 50.0% | |
| GTCGTATCATAGGCTTCCGT+TGG | + | tig0025390:20368-20387 | Msa1422480:CDS | 50.0% | |
| GTATCATAGGCTTCCGTTGG+AGG | + | tig0025390:20371-20390 | Msa1422480:CDS | 50.0% | |
| CTTCCGTTGGAGGAAGATGA+AGG | + | tig0025390:20381-20400 | Msa1422480:CDS | 50.0% | |
| CCACCTTCATCTTCCTCCAA+CGG | - | tig0025390:20387-20406 | Msa1422480:intergenic | 50.0% | |
| TGCCGTCGTCTGATGTGATT+TGG | + | tig0025390:20523-20542 | Msa1422480:CDS | 50.0% | |
| GCCGTCGTCTGATGTGATTT+GGG | + | tig0025390:20524-20543 | Msa1422480:CDS | 50.0% | |
| GCCCAAATCACATCAGACGA+CGG | - | tig0025390:20528-20547 | Msa1422480:intergenic | 50.0% | |
| AACCACAACAACAACAGCGG+CGG | + | tig0025390:19847-19866 | Msa1422480:CDS | 50.0% | |
| GGAGGAGTTAGGTTTCTGAG+CGG | - | tig0025390:19881-19900 | Msa1422480:intergenic | 50.0% | |
| GCTCAGAAACCTAACTCCTC+CGG | + | tig0025390:19880-19899 | Msa1422480:CDS | 50.0% | |
| CGTCAACCTTCAACTACACC+AGG | + | tig0025390:20138-20157 | Msa1422480:CDS | 50.0% | |
| GTGGTTCCTGGTGTAGTTGA+AGG | - | tig0025390:20147-20166 | Msa1422480:intergenic | 50.0% | |
| ! | GGAGAAACACCGTGTTGTTG+AGG | - | tig0025390:20222-20241 | Msa1422480:intergenic | 50.0% |
| GAGAAGTTACTCGGAATCGC+CGG | - | tig0025390:20243-20262 | Msa1422480:intergenic | 50.0% | |
| AACTTCTCGATCTCGCTTGC+TGG | + | tig0025390:20255-20274 | Msa1422480:CDS | 50.0% | |
| GGACCACAAGGACAGATTGT+TGG | + | tig0025390:20276-20295 | Msa1422480:CDS | 50.0% | |
| CCTCCAACAATCTGTCCTTG+TGG | - | tig0025390:20282-20301 | Msa1422480:intergenic | 50.0% | |
| CCACAAGGACAGATTGTTGG+AGG | + | tig0025390:20279-20298 | Msa1422480:CDS | 50.0% | |
| GTCGTATCATAGGCTTCCGT+TGG | + | tig0025390:20368-20387 | Msa1422480:CDS | 50.0% | |
| GTATCATAGGCTTCCGTTGG+AGG | + | tig0025390:20371-20390 | Msa1422480:CDS | 50.0% | |
| CTTCCGTTGGAGGAAGATGA+AGG | + | tig0025390:20381-20400 | Msa1422480:CDS | 50.0% | |
| CCACCTTCATCTTCCTCCAA+CGG | - | tig0025390:20387-20406 | Msa1422480:intergenic | 50.0% | |
| TGCCGTCGTCTGATGTGATT+TGG | + | tig0025390:20523-20542 | Msa1422480:CDS | 50.0% | |
| GCCGTCGTCTGATGTGATTT+GGG | + | tig0025390:20524-20543 | Msa1422480:CDS | 50.0% | |
| GCCCAAATCACATCAGACGA+CGG | - | tig0025390:20528-20547 | Msa1422480:intergenic | 50.0% | |
| GGAGTTAGGTTTCTGAGCGG+TGG | - | tig0025390:19878-19897 | Msa1422480:intergenic | 55.0% | |
| AAACCTAACTCCTCCGGCGA+CGG | + | tig0025390:19886-19905 | Msa1422480:CDS | 55.0% | |
| ACGGCCGTGAAAAGTAACGG+TGG | - | tig0025390:20166-20185 | Msa1422480:intergenic | 55.0% | |
| ! | ATCTCGCTTGCTGGACCACA+AGG | + | tig0025390:20264-20283 | Msa1422480:CDS | 55.0% |
| CCGTTGGAGGAAGATGAAGG+TGG | + | tig0025390:20384-20403 | Msa1422480:CDS | 55.0% | |
| !! | GAAGGTGGAAACTCGGTGTC+TGG | + | tig0025390:20399-20418 | Msa1422480:CDS | 55.0% |
| CTCGCAGAATGTTTCCGGTG+CGG | + | tig0025390:20440-20459 | Msa1422480:CDS | 55.0% | |
| TTGTCCACTATCCACCGCAC+CGG | - | tig0025390:20457-20476 | Msa1422480:intergenic | 55.0% | |
| !! | GTGGATAGTGGACAAGGTGG+TGG | + | tig0025390:20462-20481 | Msa1422480:CDS | 55.0% |
| !! | GATAGTGGACAAGGTGGTGG+TGG | + | tig0025390:20465-20484 | Msa1422480:CDS | 55.0% |
| GGAGTTAGGTTTCTGAGCGG+TGG | - | tig0025390:19878-19897 | Msa1422480:intergenic | 55.0% | |
| AAACCTAACTCCTCCGGCGA+CGG | + | tig0025390:19886-19905 | Msa1422480:CDS | 55.0% | |
| ACGGCCGTGAAAAGTAACGG+TGG | - | tig0025390:20166-20185 | Msa1422480:intergenic | 55.0% | |
| ! | ATCTCGCTTGCTGGACCACA+AGG | + | tig0025390:20264-20283 | Msa1422480:CDS | 55.0% |
| CCGTTGGAGGAAGATGAAGG+TGG | + | tig0025390:20384-20403 | Msa1422480:CDS | 55.0% | |
| !! | GAAGGTGGAAACTCGGTGTC+TGG | + | tig0025390:20399-20418 | Msa1422480:CDS | 55.0% |
| CTCGCAGAATGTTTCCGGTG+CGG | + | tig0025390:20440-20459 | Msa1422480:CDS | 55.0% | |
| TTGTCCACTATCCACCGCAC+CGG | - | tig0025390:20457-20476 | Msa1422480:intergenic | 55.0% | |
| !! | GTGGATAGTGGACAAGGTGG+TGG | + | tig0025390:20462-20481 | Msa1422480:CDS | 55.0% |
| !! | GATAGTGGACAAGGTGGTGG+TGG | + | tig0025390:20465-20484 | Msa1422480:CDS | 55.0% |
| ! | CACCGCCGCTGTTGTTGTTG+TGG | - | tig0025390:19852-19871 | Msa1422480:intergenic | 60.0% |
| CACAACAACAACAGCGGCGG+TGG | + | tig0025390:19850-19869 | Msa1422480:CDS | 60.0% | |
| CTCGATAGTTGCACCGTCGC+CGG | - | tig0025390:19902-19921 | Msa1422480:intergenic | 60.0% | |
| GAGGTTTCAAGACGGCCGAG+AGG | + | tig0025390:19919-19938 | Msa1422480:CDS | 60.0% | |
| !! | GGTGGAAACTCGGTGTCTGG+CGG | + | tig0025390:20402-20421 | Msa1422480:CDS | 60.0% |
| GCAGAATGTTTCCGGTGCGG+TGG | + | tig0025390:20443-20462 | Msa1422480:CDS | 60.0% | |
| GTTTCCGGTGCGGTGGATAG+TGG | + | tig0025390:20450-20469 | Msa1422480:CDS | 60.0% | |
| !! | GGTGCGGTGGATAGTGGACA+AGG | + | tig0025390:20456-20475 | Msa1422480:CDS | 60.0% |
| !! | GCGGTGGATAGTGGACAAGG+TGG | + | tig0025390:20459-20478 | Msa1422480:CDS | 60.0% |
| !! | GGTGGTGGTGGTCTAGCAGA+CGG | - | tig0025390:20552-20571 | Msa1422480:intergenic | 60.0% |
| ! | CACCGCCGCTGTTGTTGTTG+TGG | - | tig0025390:19852-19871 | Msa1422480:intergenic | 60.0% |
| CACAACAACAACAGCGGCGG+TGG | + | tig0025390:19850-19869 | Msa1422480:CDS | 60.0% | |
| CTCGATAGTTGCACCGTCGC+CGG | - | tig0025390:19902-19921 | Msa1422480:intergenic | 60.0% | |
| GAGGTTTCAAGACGGCCGAG+AGG | + | tig0025390:19919-19938 | Msa1422480:CDS | 60.0% | |
| !! | GGTGGAAACTCGGTGTCTGG+CGG | + | tig0025390:20402-20421 | Msa1422480:CDS | 60.0% |
| GCAGAATGTTTCCGGTGCGG+TGG | + | tig0025390:20443-20462 | Msa1422480:CDS | 60.0% | |
| GTTTCCGGTGCGGTGGATAG+TGG | + | tig0025390:20450-20469 | Msa1422480:CDS | 60.0% | |
| !! | GGTGCGGTGGATAGTGGACA+AGG | + | tig0025390:20456-20475 | Msa1422480:CDS | 60.0% |
| !! | GCGGTGGATAGTGGACAAGG+TGG | + | tig0025390:20459-20478 | Msa1422480:CDS | 60.0% |
| !! | GGTGGTGGTGGTCTAGCAGA+CGG | - | tig0025390:20552-20571 | Msa1422480:intergenic | 60.0% |
| GATAGTTGCACCGTCGCCGG+AGG | - | tig0025390:19899-19918 | Msa1422480:intergenic | 65.0% | |
| CGGCGACGGTGCAACTATCG+AGG | + | tig0025390:19900-19919 | Msa1422480:CDS | 65.0% | |
| GAGCCAGGTGGACGTCCTCT+CGG | - | tig0025390:19937-19956 | Msa1422480:intergenic | 65.0% | |
| !! | GGAAACTCGGTGTCTGGCGG+TGG | + | tig0025390:20405-20424 | Msa1422480:CDS | 65.0% |
| !! | AACTCGGTGTCTGGCGGTGG+TGG | + | tig0025390:20408-20427 | Msa1422480:CDS | 65.0% |
| ! | GTGTCTGGCGGTGGTGGTGA+TGG | + | tig0025390:20414-20433 | Msa1422480:CDS | 65.0% |
| GATAGTTGCACCGTCGCCGG+AGG | - | tig0025390:19899-19918 | Msa1422480:intergenic | 65.0% | |
| CGGCGACGGTGCAACTATCG+AGG | + | tig0025390:19900-19919 | Msa1422480:CDS | 65.0% | |
| GAGCCAGGTGGACGTCCTCT+CGG | - | tig0025390:19937-19956 | Msa1422480:intergenic | 65.0% | |
| !! | GGAAACTCGGTGTCTGGCGG+TGG | + | tig0025390:20405-20424 | Msa1422480:CDS | 65.0% |
| !! | AACTCGGTGTCTGGCGGTGG+TGG | + | tig0025390:20408-20427 | Msa1422480:CDS | 65.0% |
| ! | GTGTCTGGCGGTGGTGGTGA+TGG | + | tig0025390:20414-20433 | Msa1422480:CDS | 65.0% |
| GCACCGTCGCCGGAGGAGTT+AGG | - | tig0025390:19892-19911 | Msa1422480:intergenic | 70.0% | |
| !! | GGTGGTGGTGGCGAGTCGTG+TGG | + | tig0025390:20477-20496 | Msa1422480:CDS | 70.0% |
| GCACCGTCGCCGGAGGAGTT+AGG | - | tig0025390:19892-19911 | Msa1422480:intergenic | 70.0% | |
| !! | GGTGGTGGTGGCGAGTCGTG+TGG | + | tig0025390:20477-20496 | Msa1422480:CDS | 70.0% |
| CGGCCGAGAGGACGTCCACC+TGG | + | tig0025390:19931-19950 | Msa1422480:CDS | 75.0% | |
| CGGCCGAGAGGACGTCCACC+TGG | + | tig0025390:19931-19950 | Msa1422480:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025390 | gene | 19673 | 20578 | 19673 | ID=Msa1422480;Name=Msa1422480 |
| tig0025390 | mRNA | 19673 | 20578 | 19673 | ID=Msa1422480-mRNA-1;Parent=Msa1422480;Name=Msa1422480-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|301 |
| tig0025390 | exon | 19673 | 20578 | 19673 | ID=Msa1422480-mRNA-1:exon:2611;Parent=Msa1422480-mRNA-1 |
| tig0025390 | CDS | 19673 | 20578 | 19673 | ID=Msa1422480-mRNA-1:cds;Parent=Msa1422480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
