Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316210 | XP_013462787.2 | 96.133 | 362 | 14 | 0 | 1 | 362 | 1 | 362 | 0.0 | 723 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316210 | sp|Q8LPL7|ADAL_ARATH | 64.873 | 353 | 120 | 2 | 5 | 357 | 3 | 351 | 5.35e-166 | 470 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054800 | Msa0316210 | 0.824905 | 6.264043e-54 | -8.615850e-47 |
| Msa0196440 | Msa0316210 | 0.905863 | 2.736168e-80 | -8.615850e-47 |
| Msa0238350 | Msa0316210 | 0.838418 | 2.909717e-57 | -8.615850e-47 |
| Msa0274630 | Msa0316210 | 0.808499 | 3.005151e-50 | -8.615850e-47 |
| Msa0275750 | Msa0316210 | 0.947253 | 9.638503e-106 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316210 | MtrunA17_Chr2g0288101 | 96.133 | 362 | 14 | 0 | 1 | 362 | 1 | 362 | 0.0 | 723 |
| Msa0316210 | MtrunA17_Chr4g0074591 | 69.589 | 365 | 97 | 3 | 2 | 357 | 11 | 370 | 0.0 | 512 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316210 | AT4G04880.1 | 64.873 | 353 | 120 | 2 | 5 | 357 | 3 | 351 | 5.44e-167 | 470 |
| Msa0316210 | AT4G04880.2 | 59.948 | 382 | 120 | 3 | 5 | 357 | 3 | 380 | 7.24e-161 | 456 |
| Msa0316210 | AT4G04880.3 | 64.727 | 275 | 90 | 3 | 5 | 279 | 3 | 270 | 3.73e-125 | 362 |
Find 55 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATAGAAGTTCACCATTT+TGG | 0.175562 | 2_4:-13099190 | Msa0316210:intron |
| ATCAGATAATGTTGTCTATT+TGG | 0.205652 | 2_4:-13100208 | Msa0316210:CDS |
| TCTTTGTTTCTTTCTGAGTA+TGG | 0.214063 | 2_4:+13101433 | None:intergenic |
| GCACTAGAAATGAGGCATTT+AGG | 0.266579 | 2_4:-13099746 | Msa0316210:CDS |
| TAATTCAGTGTCAAAGAATA+TGG | 0.278836 | 2_4:-13098409 | Msa0316210:CDS |
| GTTGAAGTCTTCTAAAATTC+CGG | 0.298770 | 2_4:-13099341 | Msa0316210:intron |
| CCATTGCATTTATCATTGTT+AGG | 0.349227 | 2_4:+13099939 | None:intergenic |
| TAGCTGCTTCTGTTGTTTCT+CGG | 0.362736 | 2_4:+13099868 | None:intergenic |
| AACAAGCATGTCCAATCCTT+TGG | 0.365045 | 2_4:+13099389 | None:intergenic |
| ATGTTGTCTATTTGGAGTTA+AGG | 0.369465 | 2_4:-13100200 | Msa0316210:CDS |
| ACAAGCATGTCCAATCCTTT+GGG | 0.373754 | 2_4:+13099390 | None:intergenic |
| AGCAAAAGAACATACCAAAA+TGG | 0.374049 | 2_4:+13099176 | None:intergenic |
| AAATATGCTGCTGATTCATT+TGG | 0.375776 | 2_4:-13098619 | Msa0316210:intron |
| ATTCAGAGAAACGATTCAAT+TGG | 0.376629 | 2_4:-13100062 | Msa0316210:intron |
| ATGAGGCATTTAGGTGTAGT+TGG | 0.401125 | 2_4:-13099737 | Msa0316210:CDS |
| TGTGAATTAGATCAAACAAT+TGG | 0.402845 | 2_4:+13100385 | None:intergenic |
| GAGTATATATTTGCAGATAA+TGG | 0.414085 | 2_4:-13098459 | Msa0316210:CDS |
| TGAGCATGCAGTTCAACCTT+TGG | 0.422911 | 2_4:+13101371 | None:intergenic |
| TTTGTTTGACATCAAACATC+AGG | 0.434436 | 2_4:-13099228 | Msa0316210:CDS |
| TATGTTGACGCTGTAATTGA+AGG | 0.451211 | 2_4:-13100023 | Msa0316210:CDS |
| TTCTTTAGGGTTGGGAAGGT+GGG | 0.457089 | 2_4:-13098511 | Msa0316210:intron |
| GAATTTCATCCCCAAAGGAT+TGG | 0.463264 | 2_4:-13099400 | Msa0316210:CDS |
| ATTCTTTAGGGTTGGGAAGG+TGG | 0.467717 | 2_4:-13098512 | Msa0316210:intron |
| GTGGATTTCATTCCAAAGAC+TGG | 0.471560 | 2_4:-13099975 | Msa0316210:CDS |
| TCTATTCTTTAGGGTTGGGA+AGG | 0.473258 | 2_4:-13098515 | Msa0316210:intron |
| GTAGTTGGAATTGATCTCTC+TGG | 0.477585 | 2_4:-13099722 | Msa0316210:CDS |
| GGGAAATGTTTGAACTATCA+AGG | 0.479942 | 2_4:-13098491 | Msa0316210:CDS |
| TGCTATAAATTTCTCTCAAG+TGG | 0.487457 | 2_4:-13101174 | Msa0316210:CDS |
| CATATGACTATATGTCAGTC+AGG | 0.494566 | 2_4:-13098342 | Msa0316210:three_prime_UTR |
| GTCTTTGAATGAAACTCAAA+AGG | 0.498893 | 2_4:-13101198 | Msa0316210:CDS |
| GAACTGCATGCTCACCTCAA+TGG | 0.502646 | 2_4:-13101362 | Msa0316210:CDS |
| CATATTGATATACCATTCAC+CGG | 0.502916 | 2_4:+13099688 | None:intergenic |
| TTGAGTTTCATTCAAAGACT+TGG | 0.504570 | 2_4:+13101202 | None:intergenic |
| AGAAACAACAGAAGCAGCTA+TGG | 0.509552 | 2_4:-13099865 | Msa0316210:CDS |
| CTGAAATTCGCACGAGAACA+AGG | 0.510435 | 2_4:-13099556 | Msa0316210:CDS |
| TCATGCAGCTTATTTGTACA+AGG | 0.515748 | 2_4:-13098710 | Msa0316210:intron |
| TCATCAGTACATAGGACTAA+AGG | 0.537069 | 2_4:+13098679 | None:intergenic |
| TCTCGTGCGAATTTCAGTGC+TGG | 0.552290 | 2_4:+13099562 | None:intergenic |
| CCTAACAATGATAAATGCAA+TGG | 0.553486 | 2_4:-13099939 | Msa0316210:CDS |
| TGCTTGAATTTCATCCCCAA+AGG | 0.568885 | 2_4:-13099405 | Msa0316210:CDS |
| ATCAGTTAGCTCGGTCGATG+TGG | 0.576039 | 2_4:-13099994 | Msa0316210:CDS |
| GTTACTTTGAAGATGAACAC+TGG | 0.595899 | 2_4:-13099369 | Msa0316210:CDS |
| TCAAGCTTGCACTAGAAATG+AGG | 0.601803 | 2_4:-13099754 | Msa0316210:CDS |
| TATTACAGATGAGCTTACAC+TGG | 0.611582 | 2_4:-13100418 | Msa0316210:intron |
| CAAGCATGTCCAATCCTTTG+GGG | 0.620210 | 2_4:+13099391 | None:intergenic |
| GGAGTTAAGGACTACTCCAA+AGG | 0.621368 | 2_4:-13100187 | Msa0316210:intron |
| AGACTCTGATAGAACCATTG+AGG | 0.622072 | 2_4:+13101348 | None:intergenic |
| CACATGTGTCATCAGTACAT+AGG | 0.638450 | 2_4:+13098671 | None:intergenic |
| TTGGTGTCTCTCAATGCCAA+AGG | 0.639629 | 2_4:-13101387 | Msa0316210:CDS |
| AGGCGTAAGATCAGTTAGCT+CGG | 0.649204 | 2_4:-13100003 | Msa0316210:CDS |
| CTGCTTCTGTTGTTTCTCGG+CGG | 0.694637 | 2_4:+13099871 | None:intergenic |
| TGAACTATCAAGGAATGCTG+TGG | 0.695948 | 2_4:-13098481 | Msa0316210:CDS |
| ATTCAATACAAGTCTCTCTG+AGG | 0.710482 | 2_4:-13098647 | Msa0316210:CDS |
| TGTAACACTTCACTGCGGAG+AGG | 0.727183 | 2_4:-13099527 | Msa0316210:intron |
| CTTAATGTAACACTTCACTG+CGG | 0.826513 | 2_4:-13099532 | Msa0316210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATGAAATAATTAATACATT+TGG | + | chr2_4:13100505-13100524 | None:intergenic | 15.0% |
| !!! | AACAGTATTTTTTTTTATGT+TGG | - | chr2_4:13100723-13100742 | Msa0316210:intron | 15.0% |
| !! | TTATTTACAACTTTATGAAA+TGG | + | chr2_4:13100771-13100790 | None:intergenic | 15.0% |
| !!! | TGTAAGAGAATATTTTTATT+TGG | - | chr2_4:13101407-13101426 | Msa0316210:exon | 15.0% |
| !! | ATTCAGAAAAAAGAAAAGAA+GGG | + | chr2_4:13098480-13098499 | None:intergenic | 20.0% |
| !!! | TTTTATATTGACAATCAAAC+AGG | + | chr2_4:13098655-13098674 | None:intergenic | 20.0% |
| !! | TTTGATTGTCAATATAAAAC+TGG | - | chr2_4:13098656-13098675 | Msa0316210:CDS | 20.0% |
| !! | AACACAAAATTCATCATATT+AGG | - | chr2_4:13098875-13098894 | Msa0316210:intron | 20.0% |
| !!! | TTTTATTTTAGGAACATCAT+AGG | - | chr2_4:13098935-13098954 | Msa0316210:intron | 20.0% |
| !!! | AGTAACATTTTTTTACTCTA+TGG | + | chr2_4:13099169-13099188 | None:intergenic | 20.0% |
| !! | GGAAAATCTTCTTATATTTA+AGG | - | chr2_4:13099263-13099282 | Msa0316210:intron | 20.0% |
| !!! | AATATTATTTTATGCTAAGC+AGG | - | chr2_4:13099294-13099313 | Msa0316210:intron | 20.0% |
| !! | CTAGAAAAAAAATCATTGTT+AGG | - | chr2_4:13099863-13099882 | Msa0316210:CDS | 20.0% |
| !!! | AATCGCTTTTTAAATTTTGT+AGG | - | chr2_4:13100177-13100196 | Msa0316210:intron | 20.0% |
| !! | TCCTTCAATTAATTTAAGTA+AGG | - | chr2_4:13100472-13100491 | Msa0316210:intron | 20.0% |
| !! | ACCTTACTTAAATTAATTGA+AGG | + | chr2_4:13100476-13100495 | None:intergenic | 20.0% |
| !!! | TTTGATTGATTCTATATTCA+TGG | + | chr2_4:13100642-13100661 | None:intergenic | 20.0% |
| !! | TGTAAATAAACTTTCACTAA+AGG | - | chr2_4:13100782-13100801 | Msa0316210:intron | 20.0% |
| !!! | TTGTTTTTTGTCTATTCTTT+AGG | - | chr2_4:13101249-13101268 | Msa0316210:intron | 20.0% |
| !!! | TGTTTTTTGTCTATTCTTTA+GGG | - | chr2_4:13101250-13101269 | Msa0316210:intron | 20.0% |
| ! | ACAAAGAACAACAAGAAAAA+TGG | - | chr2_4:13098357-13098376 | Msa0316210:three_prime_UTR | 25.0% |
| ! | AAGAAAAGAAGGGAAATATT+TGG | + | chr2_4:13098470-13098489 | None:intergenic | 25.0% |
| ! | CATTCAGAAAAAAGAAAAGA+AGG | + | chr2_4:13098481-13098500 | None:intergenic | 25.0% |
| !!! | TTTCAAGTTTTCAATACCTT+TGG | - | chr2_4:13098741-13098760 | Msa0316210:intron | 25.0% |
| ! | TCAAAATCAATATCAACCAA+AGG | + | chr2_4:13098760-13098779 | None:intergenic | 25.0% |
| !!! | AGTTTGATTTTGTCAACAAA+AGG | - | chr2_4:13098850-13098869 | Msa0316210:intron | 25.0% |
| ! | TCGACATATCATATATTTAG+CGG | + | chr2_4:13099073-13099092 | None:intergenic | 25.0% |
| ! | AGTAAAAAAATGTTACTGCT+GGG | - | chr2_4:13099172-13099191 | Msa0316210:intron | 25.0% |
| ! | AATGCAATTGAAAATTCGAA+TGG | - | chr2_4:13099219-13099238 | Msa0316210:CDS | 25.0% |
| ! | ATGCAATTGAAAATTCGAAT+GGG | - | chr2_4:13099220-13099239 | Msa0316210:CDS | 25.0% |
| ! | GGATCTTATAAACAAGAATT+GGG | - | chr2_4:13099241-13099260 | Msa0316210:intron | 25.0% |
| ! | GATCTTATAAACAAGAATTG+GGG | - | chr2_4:13099242-13099261 | Msa0316210:intron | 25.0% |
| ! | TGTGAATTAGATCAAACAAT+TGG | + | chr2_4:13099392-13099411 | None:intergenic | 25.0% |
| ! | CAAGAATTACAAAAGAAGTA+TGG | - | chr2_4:13099439-13099458 | Msa0316210:intron | 25.0% |
| ! | TGATGATAATAGCTAAAAAC+AGG | - | chr2_4:13099527-13099546 | Msa0316210:intron | 25.0% |
| ! | ATCAGATAATGTTGTCTATT+TGG | - | chr2_4:13099566-13099585 | Msa0316210:CDS | 25.0% |
| ! | ATTCAATAGAAATAAGAACG+CGG | + | chr2_4:13099641-13099660 | None:intergenic | 25.0% |
| !! | ATCTGATGTTTATTTGTTAC+AGG | - | chr2_4:13099997-13100016 | Msa0316210:CDS | 25.0% |
| !! | ATTTCATCTTGACTATTTTC+AGG | - | chr2_4:13100517-13100536 | Msa0316210:intron | 25.0% |
| ! | AACTTTACAAAACATGTTGT+AGG | - | chr2_4:13100675-13100694 | Msa0316210:intron | 25.0% |
| ! | TTTATGAAATGGCTTCAAAA+TGG | + | chr2_4:13100760-13100779 | None:intergenic | 25.0% |
| ! | GAGTATATATTTGCAGATAA+TGG | - | chr2_4:13101315-13101334 | Msa0316210:intron | 25.0% |
| ! | TAATTCAGTGTCAAAGAATA+TGG | - | chr2_4:13101365-13101384 | Msa0316210:CDS | 25.0% |
| ! | TCTTTGTTTCTTTCTGAGTA+TGG | + | chr2_4:13098344-13098363 | None:intergenic | 30.0% |
| CAAGAAAAATGGAAGAGAAT+TGG | - | chr2_4:13098368-13098387 | Msa0316210:three_prime_UTR | 30.0% | |
| TTGAGTTTCATTCAAAGACT+TGG | + | chr2_4:13098575-13098594 | None:intergenic | 30.0% | |
| GTCTTTGAATGAAACTCAAA+AGG | - | chr2_4:13098576-13098595 | Msa0316210:intron | 30.0% | |
| TGCTATAAATTTCTCTCAAG+TGG | - | chr2_4:13098600-13098619 | Msa0316210:intron | 30.0% | |
| AACAGGAGAATACATACATT+TGG | + | chr2_4:13098638-13098657 | None:intergenic | 30.0% | |
| ACAAAAACACACAAACACAA+AGG | + | chr2_4:13098712-13098731 | None:intergenic | 30.0% | |
| TGATTATTACACACATGTGT+TGG | - | chr2_4:13098796-13098815 | Msa0316210:intron | 30.0% | |
| CAAAATCAAACTCAAAACAC+AGG | + | chr2_4:13098842-13098861 | None:intergenic | 30.0% | |
| GAGTAAAAAAATGTTACTGC+TGG | - | chr2_4:13099171-13099190 | Msa0316210:intron | 30.0% | |
| GTAAAAAAATGTTACTGCTG+GGG | - | chr2_4:13099173-13099192 | Msa0316210:intron | 30.0% | |
| GGGATCTTATAAACAAGAAT+TGG | - | chr2_4:13099240-13099259 | Msa0316210:intron | 30.0% | |
| !! | CTTCTGTTGATTCTTATATG+TGG | - | chr2_4:13099327-13099346 | Msa0316210:intron | 30.0% |
| ! | ATGTTGTCTATTTGGAGTTA+AGG | - | chr2_4:13099574-13099593 | Msa0316210:CDS | 30.0% |
| AATTACACAATGATCTGCAT+TGG | + | chr2_4:13099616-13099635 | None:intergenic | 30.0% | |
| ATTCAGAGAAACGATTCAAT+TGG | - | chr2_4:13099712-13099731 | Msa0316210:CDS | 30.0% | |
| !!! | ATTTTAGAATCTCCAGTCTT+TGG | + | chr2_4:13099814-13099833 | None:intergenic | 30.0% |
| CCATTGCATTTATCATTGTT+AGG | + | chr2_4:13099838-13099857 | None:intergenic | 30.0% | |
| CCTAACAATGATAAATGCAA+TGG | - | chr2_4:13099835-13099854 | Msa0316210:intron | 30.0% | |
| CATATTGATATACCATTCAC+CGG | + | chr2_4:13100089-13100108 | None:intergenic | 30.0% | |
| !! | GTTGAAGTCTTCTAAAATTC+CGG | - | chr2_4:13100433-13100452 | Msa0316210:intron | 30.0% |
| TTTGTTTGACATCAAACATC+AGG | - | chr2_4:13100546-13100565 | Msa0316210:intron | 30.0% | |
| ! | TCTATAGAAGTTCACCATTT+TGG | - | chr2_4:13100584-13100603 | Msa0316210:intron | 30.0% |
| AGCAAAAGAACATACCAAAA+TGG | + | chr2_4:13100601-13100620 | None:intergenic | 30.0% | |
| ! | TTGGTATGTTCTTTTGCTTA+TGG | - | chr2_4:13100603-13100622 | Msa0316210:intron | 30.0% |
| TTCAACAAGTAGTTCATGTT+TGG | - | chr2_4:13100811-13100830 | Msa0316210:intron | 30.0% | |
| !! | AAATATGCTGCTGATTCATT+TGG | - | chr2_4:13101155-13101174 | Msa0316210:intron | 30.0% |
| !!! | TTTTGTCTATTCTTTAGGGT+TGG | - | chr2_4:13101254-13101273 | Msa0316210:intron | 30.0% |
| !! | TTTGTCTATTCTTTAGGGTT+GGG | - | chr2_4:13101255-13101274 | Msa0316210:intron | 30.0% |
| CAAAACATGACATGACTACT+TGG | - | chr2_4:13098983-13099002 | Msa0316210:intron | 35.0% | |
| ! | ATCATATATTTAGCGGACAG+AGG | + | chr2_4:13099066-13099085 | None:intergenic | 35.0% |
| AGAATCAACAGAAGCAGATT+AGG | + | chr2_4:13099321-13099340 | None:intergenic | 35.0% | |
| TATTACAGATGAGCTTACAC+TGG | - | chr2_4:13099356-13099375 | Msa0316210:CDS | 35.0% | |
| TAGCTAAAAACAGGTCATTG+AGG | - | chr2_4:13099536-13099555 | Msa0316210:CDS | 35.0% | |
| TATGTTGACGCTGTAATTGA+AGG | - | chr2_4:13099751-13099770 | Msa0316210:CDS | 35.0% | |
| !!! | ATATACCATTCACCGGTTTT+TGG | + | chr2_4:13100082-13100101 | None:intergenic | 35.0% |
| CTTAATGTAACACTTCACTG+CGG | - | chr2_4:13100242-13100261 | Msa0316210:intron | 35.0% | |
| ! | ATTGCGTATCTAAAACCACA+AGG | + | chr2_4:13100330-13100349 | None:intergenic | 35.0% |
| !! | GTTTTAGATACGCAATTCGA+AGG | - | chr2_4:13100334-13100353 | Msa0316210:intron | 35.0% |
| ! | GTTACTTTGAAGATGAACAC+TGG | - | chr2_4:13100405-13100424 | Msa0316210:CDS | 35.0% |
| CTTCTGTACATGTTAAGTGT+AGG | - | chr2_4:13100981-13101000 | Msa0316210:intron | 35.0% | |
| CAAGAACATTGTGTTAAGAG+AGG | + | chr2_4:13101043-13101062 | None:intergenic | 35.0% | |
| CTCTCTTAACACAATGTTCT+TGG | - | chr2_4:13101041-13101060 | Msa0316210:intron | 35.0% | |
| TCATGCAGCTTATTTGTACA+AGG | - | chr2_4:13101064-13101083 | Msa0316210:intron | 35.0% | |
| TCATCAGTACATAGGACTAA+AGG | + | chr2_4:13101098-13101117 | None:intergenic | 35.0% | |
| ATTCAATACAAGTCTCTCTG+AGG | - | chr2_4:13101127-13101146 | Msa0316210:intron | 35.0% | |
| GGGAAATGTTTGAACTATCA+AGG | - | chr2_4:13101283-13101302 | Msa0316210:intron | 35.0% | |
| CATATGACTATATGTCAGTC+AGG | - | chr2_4:13101432-13101451 | Msa0316210:five_prime_UTR | 35.0% | |
| AGACTCTGATAGAACCATTG+AGG | + | chr2_4:13098429-13098448 | None:intergenic | 40.0% | |
| AGGACACAAAGACAAAGGTT+AGG | + | chr2_4:13098822-13098841 | None:intergenic | 40.0% | |
| AACACAGGACACAAAGACAA+AGG | + | chr2_4:13098827-13098846 | None:intergenic | 40.0% | |
| !! | TGATCTGCATTGGTTACCTT+TGG | + | chr2_4:13099606-13099625 | None:intergenic | 40.0% |
| GTGGATTTCATTCCAAAGAC+TGG | - | chr2_4:13099799-13099818 | Msa0316210:intron | 40.0% | |
| !! | TAGCTGCTTCTGTTGTTTCT+CGG | + | chr2_4:13099909-13099928 | None:intergenic | 40.0% |
| AGAAACAACAGAAGCAGCTA+TGG | - | chr2_4:13099909-13099928 | Msa0316210:CDS | 40.0% | |
| TCAAGCTTGCACTAGAAATG+AGG | - | chr2_4:13100020-13100039 | Msa0316210:CDS | 40.0% | |
| ! | GCACTAGAAATGAGGCATTT+AGG | - | chr2_4:13100028-13100047 | Msa0316210:CDS | 40.0% |
| ! | ATGAGGCATTTAGGTGTAGT+TGG | - | chr2_4:13100037-13100056 | Msa0316210:CDS | 40.0% |
| GTAGTTGGAATTGATCTCTC+TGG | - | chr2_4:13100052-13100071 | Msa0316210:CDS | 40.0% | |
| ! | CTCTCTGGAAATCCAAAAAC+CGG | - | chr2_4:13100067-13100086 | Msa0316210:intron | 40.0% |
| GAAATCCAAAAACCGGTGAA+TGG | - | chr2_4:13100074-13100093 | Msa0316210:intron | 40.0% | |
| GGTTTATTCTTCTGACCTTG+TGG | - | chr2_4:13100312-13100331 | Msa0316210:intron | 40.0% | |
| TGCTTGAATTTCATCCCCAA+AGG | - | chr2_4:13100369-13100388 | Msa0316210:CDS | 40.0% | |
| GAATTTCATCCCCAAAGGAT+TGG | - | chr2_4:13100374-13100393 | Msa0316210:CDS | 40.0% | |
| ACAAGCATGTCCAATCCTTT+GGG | + | chr2_4:13100387-13100406 | None:intergenic | 40.0% | |
| AACAAGCATGTCCAATCCTT+TGG | + | chr2_4:13100388-13100407 | None:intergenic | 40.0% | |
| CACATGTGTCATCAGTACAT+AGG | + | chr2_4:13101106-13101125 | None:intergenic | 40.0% | |
| !! | ATGCTGCTGATTCATTTGGT+AGG | - | chr2_4:13101159-13101178 | Msa0316210:CDS | 40.0% |
| !! | TCTATTCTTTAGGGTTGGGA+AGG | - | chr2_4:13101259-13101278 | Msa0316210:intron | 40.0% |
| TGAACTATCAAGGAATGCTG+TGG | - | chr2_4:13101293-13101312 | Msa0316210:intron | 40.0% | |
| ! | TTGGTGTCTCTCAATGCCAA+AGG | - | chr2_4:13098387-13098406 | Msa0316210:exon | 45.0% |
| TGAGCATGCAGTTCAACCTT+TGG | + | chr2_4:13098406-13098425 | None:intergenic | 45.0% | |
| TGTTACTGCTGGGGATATGT+TGG | - | chr2_4:13099182-13099201 | Msa0316210:intron | 45.0% | |
| GGAGTTAAGGACTACTCCAA+AGG | - | chr2_4:13099587-13099606 | Msa0316210:intron | 45.0% | |
| AGGCGTAAGATCAGTTAGCT+CGG | - | chr2_4:13099771-13099790 | Msa0316210:intron | 45.0% | |
| CTGAAATTCGCACGAGAACA+AGG | - | chr2_4:13100218-13100237 | Msa0316210:CDS | 45.0% | |
| CAAGCATGTCCAATCCTTTG+GGG | + | chr2_4:13100386-13100405 | None:intergenic | 45.0% | |
| GGAGCATGCAAAAGTCTAAC+CGG | + | chr2_4:13100455-13100474 | None:intergenic | 45.0% | |
| !! | ATTCTTTAGGGTTGGGAAGG+TGG | - | chr2_4:13101262-13101281 | Msa0316210:intron | 45.0% |
| !! | TTCTTTAGGGTTGGGAAGGT+GGG | - | chr2_4:13101263-13101282 | Msa0316210:intron | 45.0% |
| !!! | AATTATTATACTTTTATTTT+AGG | - | chr2_4:13098924-13098943 | Msa0316210:intron | 5.0% |
| GAACTGCATGCTCACCTCAA+TGG | - | chr2_4:13098412-13098431 | Msa0316210:CDS | 50.0% | |
| ATCAGTTAGCTCGGTCGATG+TGG | - | chr2_4:13099780-13099799 | Msa0316210:intron | 50.0% | |
| !! | CTGCTTCTGTTGTTTCTCGG+CGG | + | chr2_4:13099906-13099925 | None:intergenic | 50.0% |
| TCTCGTGCGAATTTCAGTGC+TGG | + | chr2_4:13100215-13100234 | None:intergenic | 50.0% | |
| TGTAACACTTCACTGCGGAG+AGG | - | chr2_4:13100247-13100266 | Msa0316210:intron | 50.0% | |
| ! | CTTGTTCTGAGTTTCGCGAC+TGG | - | chr2_4:13100291-13100310 | Msa0316210:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 13098274 | 13101522 | 13098274 | ID=Msa0316210;Name=Msa0316210 |
| chr2_4 | mRNA | 13098274 | 13101522 | 13098274 | ID=Msa0316210-mRNA-1;Parent=Msa0316210;Name=Msa0316210-mRNA-1;_AED=0.18;_eAED=0.18;_QI=102|1|1|1|1|1|11|127|362 |
| chr2_4 | exon | 13098274 | 13098525 | 13098274 | ID=Msa0316210-mRNA-1:exon:5002;Parent=Msa0316210-mRNA-1 |
| chr2_4 | exon | 13098620 | 13098724 | 13098620 | ID=Msa0316210-mRNA-1:exon:5001;Parent=Msa0316210-mRNA-1 |
| chr2_4 | exon | 13099191 | 13099257 | 13099191 | ID=Msa0316210-mRNA-1:exon:5000;Parent=Msa0316210-mRNA-1 |
| chr2_4 | exon | 13099342 | 13099455 | 13099342 | ID=Msa0316210-mRNA-1:exon:4999;Parent=Msa0316210-mRNA-1 |
| chr2_4 | exon | 13099528 | 13099597 | 13099528 | ID=Msa0316210-mRNA-1:exon:4998;Parent=Msa0316210-mRNA-1 |
| chr2_4 | exon | 13099701 | 13099777 | 13099701 | ID=Msa0316210-mRNA-1:exon:4997;Parent=Msa0316210-mRNA-1 |
| chr2_4 | exon | 13099860 | 13100078 | 13099860 | ID=Msa0316210-mRNA-1:exon:4996;Parent=Msa0316210-mRNA-1 |
| chr2_4 | exon | 13100188 | 13100247 | 13100188 | ID=Msa0316210-mRNA-1:exon:4995;Parent=Msa0316210-mRNA-1 |
| chr2_4 | exon | 13100341 | 13100432 | 13100341 | ID=Msa0316210-mRNA-1:exon:4994;Parent=Msa0316210-mRNA-1 |
| chr2_4 | exon | 13101156 | 13101232 | 13101156 | ID=Msa0316210-mRNA-1:exon:4993;Parent=Msa0316210-mRNA-1 |
| chr2_4 | exon | 13101338 | 13101522 | 13101338 | ID=Msa0316210-mRNA-1:exon:4992;Parent=Msa0316210-mRNA-1 |
| chr2_4 | five_prime_UTR | 13101421 | 13101522 | 13101421 | ID=Msa0316210-mRNA-1:five_prime_utr;Parent=Msa0316210-mRNA-1 |
| chr2_4 | CDS | 13101338 | 13101420 | 13101338 | ID=Msa0316210-mRNA-1:cds;Parent=Msa0316210-mRNA-1 |
| chr2_4 | CDS | 13101156 | 13101232 | 13101156 | ID=Msa0316210-mRNA-1:cds;Parent=Msa0316210-mRNA-1 |
| chr2_4 | CDS | 13100341 | 13100432 | 13100341 | ID=Msa0316210-mRNA-1:cds;Parent=Msa0316210-mRNA-1 |
| chr2_4 | CDS | 13100188 | 13100247 | 13100188 | ID=Msa0316210-mRNA-1:cds;Parent=Msa0316210-mRNA-1 |
| chr2_4 | CDS | 13099860 | 13100078 | 13099860 | ID=Msa0316210-mRNA-1:cds;Parent=Msa0316210-mRNA-1 |
| chr2_4 | CDS | 13099701 | 13099777 | 13099701 | ID=Msa0316210-mRNA-1:cds;Parent=Msa0316210-mRNA-1 |
| chr2_4 | CDS | 13099528 | 13099597 | 13099528 | ID=Msa0316210-mRNA-1:cds;Parent=Msa0316210-mRNA-1 |
| chr2_4 | CDS | 13099342 | 13099455 | 13099342 | ID=Msa0316210-mRNA-1:cds;Parent=Msa0316210-mRNA-1 |
| chr2_4 | CDS | 13099191 | 13099257 | 13099191 | ID=Msa0316210-mRNA-1:cds;Parent=Msa0316210-mRNA-1 |
| chr2_4 | CDS | 13098620 | 13098724 | 13098620 | ID=Msa0316210-mRNA-1:cds;Parent=Msa0316210-mRNA-1 |
| chr2_4 | CDS | 13098401 | 13098525 | 13098401 | ID=Msa0316210-mRNA-1:cds;Parent=Msa0316210-mRNA-1 |
| chr2_4 | three_prime_UTR | 13098274 | 13098400 | 13098274 | ID=Msa0316210-mRNA-1:three_prime_utr;Parent=Msa0316210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
