Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275750 | XP_013462787.2 | 95.856 | 362 | 15 | 0 | 35 | 396 | 1 | 362 | 0.0 | 722 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275750 | sp|Q8LPL7|ADAL_ARATH | 64.589 | 353 | 121 | 2 | 39 | 391 | 3 | 351 | 1.01e-164 | 468 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054800 | Msa0275750 | 0.806397 | 8.389475e-50 | -8.615850e-47 |
| Msa0193540 | Msa0275750 | 0.807616 | 4.633857e-50 | -8.615850e-47 |
| Msa0196440 | Msa0275750 | 0.882484 | 1.002245e-70 | -8.615850e-47 |
| Msa0238350 | Msa0275750 | 0.842332 | 2.758739e-58 | -8.615850e-47 |
| Msa0274630 | Msa0275750 | 0.815135 | 1.079458e-51 | -8.615850e-47 |
| Msa0275750 | Msa0275800 | 0.817382 | 3.394952e-52 | -8.615850e-47 |
| Msa0275750 | Msa0314060 | 0.810596 | 1.065376e-50 | -8.615850e-47 |
| Msa0275750 | Msa0316210 | 0.947253 | 9.638503e-106 | -8.615850e-47 |
| Msa0275750 | Msa0465060 | -0.808854 | 2.524323e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275750 | MtrunA17_Chr2g0288101 | 95.856 | 362 | 15 | 0 | 35 | 396 | 1 | 362 | 0.0 | 722 |
| Msa0275750 | MtrunA17_Chr4g0074591 | 68.901 | 373 | 102 | 3 | 28 | 391 | 3 | 370 | 0.0 | 519 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275750 | AT4G04880.1 | 64.589 | 353 | 121 | 2 | 39 | 391 | 3 | 351 | 1.03e-165 | 468 |
| Msa0275750 | AT4G04880.2 | 59.686 | 382 | 121 | 3 | 39 | 391 | 3 | 380 | 6.24e-160 | 455 |
| Msa0275750 | AT4G04880.3 | 64.364 | 275 | 91 | 3 | 39 | 313 | 3 | 270 | 5.15e-124 | 360 |
Find 54 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATAGAAGTTCACCATTT+TGG | 0.175562 | 2_3:+7914940 | Msa0275750:CDS |
| ATCAGATAATGTTGTCTATT+TGG | 0.205652 | 2_3:+7913922 | Msa0275750:CDS |
| TCTTTGTTTCTTTCTGAGTA+TGG | 0.214063 | 2_3:-7912703 | None:intergenic |
| GCACTAGAAATGAGGCATTT+AGG | 0.266579 | 2_3:+7914384 | Msa0275750:CDS |
| TAATTCAGTGTCAAAGAATA+TGG | 0.278836 | 2_3:+7915721 | Msa0275750:CDS |
| GTTGAAGTCTTCTAAAATTC+CGG | 0.298770 | 2_3:+7914789 | Msa0275750:CDS |
| CGATTGCATTTATCATTGTT+AGG | 0.339717 | 2_3:-7914191 | None:intergenic |
| TAGCTGCTTCTGTTGTTTCT+CGG | 0.362736 | 2_3:-7914262 | None:intergenic |
| AACAAGCATGTCCAATCCTT+TGG | 0.365045 | 2_3:-7914741 | None:intergenic |
| ATGTTGTCTATTTGGAGTTA+AGG | 0.369465 | 2_3:+7913930 | Msa0275750:CDS |
| ACAAGCATGTCCAATCCTTT+GGG | 0.373754 | 2_3:-7914740 | None:intergenic |
| AGCAAAAGAACATACCAAAA+TGG | 0.374049 | 2_3:-7914954 | None:intergenic |
| AAATATGCTGCTGATTCATT+TGG | 0.375776 | 2_3:+7915509 | Msa0275750:CDS |
| ATTCAGAGAAACGATTCAAT+TGG | 0.376629 | 2_3:+7914068 | Msa0275750:intron |
| ATGAGGCATTTAGGTGTAGT+TGG | 0.401125 | 2_3:+7914393 | Msa0275750:CDS |
| TGTGAATTAGATCAAACAAT+TGG | 0.402845 | 2_3:-7913745 | None:intergenic |
| GAGTATATATTTGCAGATAA+TGG | 0.414085 | 2_3:+7915671 | Msa0275750:CDS |
| TGAGCATGCAGTTCAACCTT+TGG | 0.422911 | 2_3:-7912765 | None:intergenic |
| TTTGTTTGACATCAAACATC+AGG | 0.434436 | 2_3:+7914902 | Msa0275750:CDS |
| TATGTTGACGCTGTAATTGA+AGG | 0.451211 | 2_3:+7914107 | Msa0275750:CDS |
| GAATTTCATCCCCAAAGGAT+TGG | 0.463264 | 2_3:+7914730 | Msa0275750:CDS |
| ATTCCTTAGGGTTGGGAAGG+TGG | 0.467717 | 2_3:+7915618 | Msa0275750:intron |
| GTGGATTTCATTCCAAAGAC+TGG | 0.471560 | 2_3:+7914155 | Msa0275750:CDS |
| GTAGTTGGAATTGATCTCTC+TGG | 0.477585 | 2_3:+7914408 | Msa0275750:CDS |
| GGGAAATGTTTGAACTATCA+AGG | 0.479942 | 2_3:+7915639 | Msa0275750:CDS |
| TTCCTTAGGGTTGGGAAGGT+GGG | 0.483808 | 2_3:+7915619 | Msa0275750:intron |
| TGCTATAAATTTCTCTCAAG+TGG | 0.487457 | 2_3:+7912962 | Msa0275750:CDS |
| TCTATTCCTTAGGGTTGGGA+AGG | 0.489034 | 2_3:+7915615 | Msa0275750:intron |
| CATATGACTATATGTCAGTC+AGG | 0.494566 | 2_3:+7915788 | Msa0275750:three_prime_UTR |
| GTCTTTGAATGAAACTCAAA+AGG | 0.498893 | 2_3:+7912938 | Msa0275750:CDS |
| GAACTGCATGCTCACCTCAA+TGG | 0.502646 | 2_3:+7912774 | Msa0275750:CDS |
| CATATTGATATACCATTCAC+CGG | 0.502916 | 2_3:-7914442 | None:intergenic |
| TTGAGTTTCATTCAAAGACT+TGG | 0.504570 | 2_3:-7912934 | None:intergenic |
| AGAAACAACAGAAGCAGCTA+TGG | 0.509552 | 2_3:+7914265 | Msa0275750:CDS |
| CTGAAATTCGCACGAGAACA+AGG | 0.510435 | 2_3:+7914574 | Msa0275750:CDS |
| TCATGCAGCTTATTTGTACA+AGG | 0.515748 | 2_3:+7915418 | Msa0275750:intron |
| TCATCAGTACATAGGACTAA+AGG | 0.537069 | 2_3:-7915449 | None:intergenic |
| TCTCGTGCGAATTTCAGTGC+TGG | 0.552290 | 2_3:-7914568 | None:intergenic |
| TGCTTGAATTTCATCCCCAA+AGG | 0.568885 | 2_3:+7914725 | Msa0275750:CDS |
| ATCAGTTAGCTCGGTCGATG+TGG | 0.576039 | 2_3:+7914136 | Msa0275750:CDS |
| GTTACTTTGAAGATGAACAC+TGG | 0.595899 | 2_3:+7914761 | Msa0275750:CDS |
| TCAAGCTTGCACTAGAAATG+AGG | 0.601803 | 2_3:+7914376 | Msa0275750:CDS |
| TATTACAGATGAGCTTACAC+TGG | 0.611582 | 2_3:+7913712 | Msa0275750:intron |
| CAAGCATGTCCAATCCTTTG+GGG | 0.620210 | 2_3:-7914739 | None:intergenic |
| GGAGTTAAGGACTACTCCAA+AGG | 0.621368 | 2_3:+7913943 | Msa0275750:CDS |
| AGACTCTGATAGAACCATTG+AGG | 0.622072 | 2_3:-7912788 | None:intergenic |
| CACATGTGTCATCAGTACAT+AGG | 0.638450 | 2_3:-7915457 | None:intergenic |
| TTGGTGTCTCTCAATGCCAA+AGG | 0.639629 | 2_3:+7912749 | Msa0275750:CDS |
| AGGCGTAAGATCAGTTAGCT+CGG | 0.649204 | 2_3:+7914127 | Msa0275750:CDS |
| CTGCTTCTGTTGTTTCTCGG+CGG | 0.694637 | 2_3:-7914259 | None:intergenic |
| TGAACTATCAAGGAATGCTG+TGG | 0.695948 | 2_3:+7915649 | Msa0275750:CDS |
| ATTCAATACAAGTCTCTCTG+AGG | 0.710482 | 2_3:+7915481 | Msa0275750:CDS |
| TGTAACACTTCACTGCGGAG+AGG | 0.727183 | 2_3:+7914603 | Msa0275750:CDS |
| CTTAATGTAACACTTCACTG+CGG | 0.826513 | 2_3:+7914598 | Msa0275750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATGAAATAATTAATACATT+TGG | - | chr2_3:7914861-7914880 | None:intergenic | 15.0% |
| !!! | AACAGTATTTTTTTTTATGT+TGG | + | chr2_3:7915079-7915098 | Msa0275750:intron | 15.0% |
| !! | TTATTTACAACTTTATGAAA+TGG | - | chr2_3:7915127-7915146 | None:intergenic | 15.0% |
| !!! | TGTAAGAGAATATTTTTATT+TGG | + | chr2_3:7915763-7915782 | Msa0275750:three_prime_UTR | 15.0% |
| !! | ATTCAGAAAAAAGAAAAGAA+GGG | - | chr2_3:7912842-7912861 | None:intergenic | 20.0% |
| !!! | TTTTATATTGACAATCAAAC+AGG | - | chr2_3:7913017-7913036 | None:intergenic | 20.0% |
| !! | TTTGATTGTCAATATAAAAC+TGG | + | chr2_3:7913018-7913037 | Msa0275750:intron | 20.0% |
| !! | AACACAAAATTCATCATATT+AGG | + | chr2_3:7913237-7913256 | Msa0275750:intron | 20.0% |
| !!! | TTTTATTTTAGGAACATCAT+AGG | + | chr2_3:7913297-7913316 | Msa0275750:intron | 20.0% |
| !!! | AGTAACATTTTTTTACTCTA+TGG | - | chr2_3:7913531-7913550 | None:intergenic | 20.0% |
| !! | AATACAATTGAAAATTCGAA+TGG | + | chr2_3:7913581-7913600 | Msa0275750:intron | 20.0% |
| !! | ATACAATTGAAAATTCGAAT+GGG | + | chr2_3:7913582-7913601 | Msa0275750:intron | 20.0% |
| !! | CTAGAAAAAAAATCATTGTT+AGG | + | chr2_3:7914219-7914238 | Msa0275750:CDS | 20.0% |
| !!! | AATCGCTTTTTAAATTTTGT+AGG | + | chr2_3:7914533-7914552 | Msa0275750:intron | 20.0% |
| !! | TCCTTCAATTAATTTAAGTA+AGG | + | chr2_3:7914828-7914847 | Msa0275750:intron | 20.0% |
| !! | ACCTTACTTAAATTAATTGA+AGG | - | chr2_3:7914832-7914851 | None:intergenic | 20.0% |
| !!! | TTTGATTGATTCTATATTCA+TGG | - | chr2_3:7914998-7915017 | None:intergenic | 20.0% |
| !! | TGTAAATAAACTTTCACTAA+AGG | + | chr2_3:7915138-7915157 | Msa0275750:intron | 20.0% |
| ! | ACAAAGAACAACAAGAAAAA+TGG | + | chr2_3:7912719-7912738 | Msa0275750:CDS | 25.0% |
| ! | AAGAAAAGAAGGGAAATATT+TGG | - | chr2_3:7912832-7912851 | None:intergenic | 25.0% |
| ! | CATTCAGAAAAAAGAAAAGA+AGG | - | chr2_3:7912843-7912862 | None:intergenic | 25.0% |
| !!! | TTTCAAGTTTTCAATACCTT+TGG | + | chr2_3:7913103-7913122 | Msa0275750:intron | 25.0% |
| ! | TCAAAATCAATATCAACCAA+AGG | - | chr2_3:7913122-7913141 | None:intergenic | 25.0% |
| !!! | AGTTTGATTTTGTCAACAAA+AGG | + | chr2_3:7913212-7913231 | Msa0275750:intron | 25.0% |
| ! | AGTAAAAAAATGTTACTGCA+GGG | + | chr2_3:7913534-7913553 | Msa0275750:intron | 25.0% |
| ! | TACAATTGAAAATTCGAATG+GGG | + | chr2_3:7913583-7913602 | Msa0275750:intron | 25.0% |
| ! | TTAAGGACGAATGTAATATT+AGG | + | chr2_3:7913650-7913669 | Msa0275750:intron | 25.0% |
| ! | TGTGAATTAGATCAAACAAT+TGG | - | chr2_3:7913748-7913767 | None:intergenic | 25.0% |
| ! | CAAGAATTACAAAAGAAGTA+TGG | + | chr2_3:7913795-7913814 | Msa0275750:intron | 25.0% |
| ! | TGATGATAATAGCTAAAAAC+AGG | + | chr2_3:7913883-7913902 | Msa0275750:intron | 25.0% |
| ! | ATCAGATAATGTTGTCTATT+TGG | + | chr2_3:7913922-7913941 | Msa0275750:CDS | 25.0% |
| ! | ATTCAATAGAAATAAGAACG+CGG | - | chr2_3:7913997-7914016 | None:intergenic | 25.0% |
| !! | ATCTGATGTTTATTTGTTAC+AGG | + | chr2_3:7914353-7914372 | Msa0275750:intron | 25.0% |
| !! | ATTTCATCTTGACTATTTTC+AGG | + | chr2_3:7914873-7914892 | Msa0275750:intron | 25.0% |
| ! | AACTTTACAAAACATGTTGT+AGG | + | chr2_3:7915031-7915050 | Msa0275750:intron | 25.0% |
| ! | TTTATGAAATGGCTTCAAAA+TGG | - | chr2_3:7915116-7915135 | None:intergenic | 25.0% |
| !!! | TTGTTTTTTGTCTATTCCTT+AGG | + | chr2_3:7915605-7915624 | Msa0275750:intron | 25.0% |
| !!! | TGTTTTTTGTCTATTCCTTA+GGG | + | chr2_3:7915606-7915625 | Msa0275750:intron | 25.0% |
| ! | GAGTATATATTTGCAGATAA+TGG | + | chr2_3:7915671-7915690 | Msa0275750:CDS | 25.0% |
| ! | TAATTCAGTGTCAAAGAATA+TGG | + | chr2_3:7915721-7915740 | Msa0275750:CDS | 25.0% |
| ! | TCTTTGTTTCTTTCTGAGTA+TGG | - | chr2_3:7912706-7912725 | None:intergenic | 30.0% |
| CAAGAAAAATGGAAGAGAAT+TGG | + | chr2_3:7912730-7912749 | Msa0275750:CDS | 30.0% | |
| TTGAGTTTCATTCAAAGACT+TGG | - | chr2_3:7912937-7912956 | None:intergenic | 30.0% | |
| GTCTTTGAATGAAACTCAAA+AGG | + | chr2_3:7912938-7912957 | Msa0275750:CDS | 30.0% | |
| TGCTATAAATTTCTCTCAAG+TGG | + | chr2_3:7912962-7912981 | Msa0275750:CDS | 30.0% | |
| AACAGGAGAATACATACATT+TGG | - | chr2_3:7913000-7913019 | None:intergenic | 30.0% | |
| ACAAAAACACACAAACACAA+AGG | - | chr2_3:7913074-7913093 | None:intergenic | 30.0% | |
| TGATTATTACACACATGTGT+TGG | + | chr2_3:7913158-7913177 | Msa0275750:intron | 30.0% | |
| CAAAATCAAACTCAAAACAC+AGG | - | chr2_3:7913204-7913223 | None:intergenic | 30.0% | |
| CATATCATATATTTAGCCGA+GGG | - | chr2_3:7913431-7913450 | None:intergenic | 30.0% | |
| ACATATCATATATTTAGCCG+AGG | - | chr2_3:7913432-7913451 | None:intergenic | 30.0% | |
| GAGTAAAAAAATGTTACTGC+AGG | + | chr2_3:7913533-7913552 | Msa0275750:intron | 30.0% | |
| GTAAAAAAATGTTACTGCAG+GGG | + | chr2_3:7913535-7913554 | Msa0275750:intron | 30.0% | |
| CTTAAATATAAGACCCTCTT+GGG | - | chr2_3:7913635-7913654 | None:intergenic | 30.0% | |
| AGAATCAACAGAAGTAGATT+AGG | - | chr2_3:7913677-7913696 | None:intergenic | 30.0% | |
| !! | CTTCTGTTGATTCTTATATG+TGG | + | chr2_3:7913683-7913702 | Msa0275750:intron | 30.0% |
| ! | ATGTTGTCTATTTGGAGTTA+AGG | + | chr2_3:7913930-7913949 | Msa0275750:CDS | 30.0% |
| AATTACACAATGATCTGCAT+TGG | - | chr2_3:7913972-7913991 | None:intergenic | 30.0% | |
| ATTCAGAGAAACGATTCAAT+TGG | + | chr2_3:7914068-7914087 | Msa0275750:intron | 30.0% | |
| !!! | ATTTTAGAATCTCCAGTCTT+TGG | - | chr2_3:7914170-7914189 | None:intergenic | 30.0% |
| CGATTGCATTTATCATTGTT+AGG | - | chr2_3:7914194-7914213 | None:intergenic | 30.0% | |
| CATATTGATATACCATTCAC+CGG | - | chr2_3:7914445-7914464 | None:intergenic | 30.0% | |
| !! | GTTGAAGTCTTCTAAAATTC+CGG | + | chr2_3:7914789-7914808 | Msa0275750:CDS | 30.0% |
| TTTGTTTGACATCAAACATC+AGG | + | chr2_3:7914902-7914921 | Msa0275750:CDS | 30.0% | |
| ! | TCTATAGAAGTTCACCATTT+TGG | + | chr2_3:7914940-7914959 | Msa0275750:CDS | 30.0% |
| AGCAAAAGAACATACCAAAA+TGG | - | chr2_3:7914957-7914976 | None:intergenic | 30.0% | |
| ! | TTGGTATGTTCTTTTGCTTA+TGG | + | chr2_3:7914959-7914978 | Msa0275750:intron | 30.0% |
| TTCAACAAGTAGTTCATGTT+TGG | + | chr2_3:7915167-7915186 | Msa0275750:intron | 30.0% | |
| !! | AAATATGCTGCTGATTCATT+TGG | + | chr2_3:7915509-7915528 | Msa0275750:CDS | 30.0% |
| CAAAACATGACATGACTACT+TGG | + | chr2_3:7913345-7913364 | Msa0275750:intron | 35.0% | |
| ! | GTTTTTATTAGTACCTCCCT+CGG | + | chr2_3:7913412-7913431 | Msa0275750:intron | 35.0% |
| ! | GGTCTTATACACAAGAACAT+GGG | + | chr2_3:7913604-7913623 | Msa0275750:intron | 35.0% |
| CCTTAAATATAAGACCCTCT+TGG | - | chr2_3:7913636-7913655 | None:intergenic | 35.0% | |
| ! | CCAAGAGGGTCTTATATTTA+AGG | + | chr2_3:7913633-7913652 | Msa0275750:intron | 35.0% |
| TATTACAGATGAGCTTACAC+TGG | + | chr2_3:7913712-7913731 | Msa0275750:intron | 35.0% | |
| TAGCTAAAAACAGGTCATTG+AGG | + | chr2_3:7913892-7913911 | Msa0275750:intron | 35.0% | |
| TATGTTGACGCTGTAATTGA+AGG | + | chr2_3:7914107-7914126 | Msa0275750:CDS | 35.0% | |
| !!! | ATATACCATTCACCGGTTTT+TGG | - | chr2_3:7914438-7914457 | None:intergenic | 35.0% |
| CTTAATGTAACACTTCACTG+CGG | + | chr2_3:7914598-7914617 | Msa0275750:CDS | 35.0% | |
| ! | ATTGCGTATCTAAAACCACA+AGG | - | chr2_3:7914686-7914705 | None:intergenic | 35.0% |
| !! | GTTTTAGATACGCAATTCGA+AGG | + | chr2_3:7914690-7914709 | Msa0275750:intron | 35.0% |
| ! | GTTACTTTGAAGATGAACAC+TGG | + | chr2_3:7914761-7914780 | Msa0275750:CDS | 35.0% |
| CTTCTGTACATGTTAAGTGT+AGG | + | chr2_3:7915335-7915354 | Msa0275750:intron | 35.0% | |
| CAAGAACATTGTGTTAAGAG+AGG | - | chr2_3:7915397-7915416 | None:intergenic | 35.0% | |
| CTCTCTTAACACAATGTTCT+TGG | + | chr2_3:7915395-7915414 | Msa0275750:intron | 35.0% | |
| TCATGCAGCTTATTTGTACA+AGG | + | chr2_3:7915418-7915437 | Msa0275750:intron | 35.0% | |
| TCATCAGTACATAGGACTAA+AGG | - | chr2_3:7915452-7915471 | None:intergenic | 35.0% | |
| ATTCAATACAAGTCTCTCTG+AGG | + | chr2_3:7915481-7915500 | Msa0275750:CDS | 35.0% | |
| ! | TTTTGTCTATTCCTTAGGGT+TGG | + | chr2_3:7915610-7915629 | Msa0275750:intron | 35.0% |
| TTTGTCTATTCCTTAGGGTT+GGG | + | chr2_3:7915611-7915630 | Msa0275750:intron | 35.0% | |
| GGGAAATGTTTGAACTATCA+AGG | + | chr2_3:7915639-7915658 | Msa0275750:CDS | 35.0% | |
| CATATGACTATATGTCAGTC+AGG | + | chr2_3:7915788-7915807 | Msa0275750:three_prime_UTR | 35.0% | |
| AGACTCTGATAGAACCATTG+AGG | - | chr2_3:7912791-7912810 | None:intergenic | 40.0% | |
| AGGACACAAAGACAAAGGTT+AGG | - | chr2_3:7913184-7913203 | None:intergenic | 40.0% | |
| AACACAGGACACAAAGACAA+AGG | - | chr2_3:7913189-7913208 | None:intergenic | 40.0% | |
| ATCATATATTTAGCCGAGGG+AGG | - | chr2_3:7913428-7913447 | None:intergenic | 40.0% | |
| ! | GGGTCTTATACACAAGAACA+TGG | + | chr2_3:7913603-7913622 | Msa0275750:intron | 40.0% |
| AACATGGGAAAATCCCAAGA+GGG | + | chr2_3:7913619-7913638 | Msa0275750:intron | 40.0% | |
| !! | TGATCTGCATTGGTTACCTT+TGG | - | chr2_3:7913962-7913981 | None:intergenic | 40.0% |
| GTGGATTTCATTCCAAAGAC+TGG | + | chr2_3:7914155-7914174 | Msa0275750:CDS | 40.0% | |
| !! | TAGCTGCTTCTGTTGTTTCT+CGG | - | chr2_3:7914265-7914284 | None:intergenic | 40.0% |
| AGAAACAACAGAAGCAGCTA+TGG | + | chr2_3:7914265-7914284 | Msa0275750:CDS | 40.0% | |
| TCAAGCTTGCACTAGAAATG+AGG | + | chr2_3:7914376-7914395 | Msa0275750:CDS | 40.0% | |
| ! | GCACTAGAAATGAGGCATTT+AGG | + | chr2_3:7914384-7914403 | Msa0275750:CDS | 40.0% |
| ! | ATGAGGCATTTAGGTGTAGT+TGG | + | chr2_3:7914393-7914412 | Msa0275750:CDS | 40.0% |
| GTAGTTGGAATTGATCTCTC+TGG | + | chr2_3:7914408-7914427 | Msa0275750:CDS | 40.0% | |
| ! | CTCTCTGGAAATCCAAAAAC+CGG | + | chr2_3:7914423-7914442 | Msa0275750:CDS | 40.0% |
| GAAATCCAAAAACCGGTGAA+TGG | + | chr2_3:7914430-7914449 | Msa0275750:CDS | 40.0% | |
| GGTTTATTCTTCTGACCTTG+TGG | + | chr2_3:7914668-7914687 | Msa0275750:intron | 40.0% | |
| TGCTTGAATTTCATCCCCAA+AGG | + | chr2_3:7914725-7914744 | Msa0275750:CDS | 40.0% | |
| GAATTTCATCCCCAAAGGAT+TGG | + | chr2_3:7914730-7914749 | Msa0275750:CDS | 40.0% | |
| ACAAGCATGTCCAATCCTTT+GGG | - | chr2_3:7914743-7914762 | None:intergenic | 40.0% | |
| AACAAGCATGTCCAATCCTT+TGG | - | chr2_3:7914744-7914763 | None:intergenic | 40.0% | |
| CACATGTGTCATCAGTACAT+AGG | - | chr2_3:7915460-7915479 | None:intergenic | 40.0% | |
| !! | ATGCTGCTGATTCATTTGGT+AGG | + | chr2_3:7915513-7915532 | Msa0275750:intron | 40.0% |
| TGAACTATCAAGGAATGCTG+TGG | + | chr2_3:7915649-7915668 | Msa0275750:CDS | 40.0% | |
| ! | TTGGTGTCTCTCAATGCCAA+AGG | + | chr2_3:7912749-7912768 | Msa0275750:CDS | 45.0% |
| TGAGCATGCAGTTCAACCTT+TGG | - | chr2_3:7912768-7912787 | None:intergenic | 45.0% | |
| TGTTACTGCAGGGGATATGT+TGG | + | chr2_3:7913544-7913563 | Msa0275750:intron | 45.0% | |
| GAACATGGGAAAATCCCAAG+AGG | + | chr2_3:7913618-7913637 | Msa0275750:intron | 45.0% | |
| GGAGTTAAGGACTACTCCAA+AGG | + | chr2_3:7913943-7913962 | Msa0275750:CDS | 45.0% | |
| AGGCGTAAGATCAGTTAGCT+CGG | + | chr2_3:7914127-7914146 | Msa0275750:CDS | 45.0% | |
| CTGAAATTCGCACGAGAACA+AGG | + | chr2_3:7914574-7914593 | Msa0275750:CDS | 45.0% | |
| CAAGCATGTCCAATCCTTTG+GGG | - | chr2_3:7914742-7914761 | None:intergenic | 45.0% | |
| GGAGCATGCAAAAGTCTAAC+CGG | - | chr2_3:7914811-7914830 | None:intergenic | 45.0% | |
| TCTATTCCTTAGGGTTGGGA+AGG | + | chr2_3:7915615-7915634 | Msa0275750:intron | 45.0% | |
| !!! | AATTATTATACTTTTATTTT+AGG | + | chr2_3:7913286-7913305 | Msa0275750:intron | 5.0% |
| GAACTGCATGCTCACCTCAA+TGG | + | chr2_3:7912774-7912793 | Msa0275750:CDS | 50.0% | |
| ATCAGTTAGCTCGGTCGATG+TGG | + | chr2_3:7914136-7914155 | Msa0275750:CDS | 50.0% | |
| !! | CTGCTTCTGTTGTTTCTCGG+CGG | - | chr2_3:7914262-7914281 | None:intergenic | 50.0% |
| TCTCGTGCGAATTTCAGTGC+TGG | - | chr2_3:7914571-7914590 | None:intergenic | 50.0% | |
| TGTAACACTTCACTGCGGAG+AGG | + | chr2_3:7914603-7914622 | Msa0275750:CDS | 50.0% | |
| ! | CTTGTTCTGAGTTTCGCGAC+TGG | + | chr2_3:7914647-7914666 | Msa0275750:intron | 50.0% |
| ATTCCTTAGGGTTGGGAAGG+TGG | + | chr2_3:7915618-7915637 | Msa0275750:intron | 50.0% | |
| TTCCTTAGGGTTGGGAAGGT+GGG | + | chr2_3:7915619-7915638 | Msa0275750:intron | 50.0% | |
| TTCCCACCTTCCCAACCCTA+AGG | - | chr2_3:7915624-7915643 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 7912636 | 7915878 | 7912636 | ID=Msa0275750;Name=Msa0275750 |
| chr2_3 | mRNA | 7912636 | 7915878 | 7912636 | ID=Msa0275750-mRNA-1;Parent=Msa0275750;Name=Msa0275750-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|1|1|1|1|1|11|127|396 |
| chr2_3 | exon | 7912636 | 7912820 | 7912636 | ID=Msa0275750-mRNA-1:exon:3612;Parent=Msa0275750-mRNA-1 |
| chr2_3 | exon | 7912926 | 7913002 | 7912926 | ID=Msa0275750-mRNA-1:exon:3613;Parent=Msa0275750-mRNA-1 |
| chr2_3 | exon | 7913720 | 7913811 | 7913720 | ID=Msa0275750-mRNA-1:exon:3614;Parent=Msa0275750-mRNA-1 |
| chr2_3 | exon | 7913905 | 7913964 | 7913905 | ID=Msa0275750-mRNA-1:exon:3615;Parent=Msa0275750-mRNA-1 |
| chr2_3 | exon | 7914074 | 7914292 | 7914074 | ID=Msa0275750-mRNA-1:exon:3616;Parent=Msa0275750-mRNA-1 |
| chr2_3 | exon | 7914375 | 7914451 | 7914375 | ID=Msa0275750-mRNA-1:exon:3617;Parent=Msa0275750-mRNA-1 |
| chr2_3 | exon | 7914555 | 7914624 | 7914555 | ID=Msa0275750-mRNA-1:exon:3618;Parent=Msa0275750-mRNA-1 |
| chr2_3 | exon | 7914697 | 7914810 | 7914697 | ID=Msa0275750-mRNA-1:exon:3619;Parent=Msa0275750-mRNA-1 |
| chr2_3 | exon | 7914895 | 7914961 | 7914895 | ID=Msa0275750-mRNA-1:exon:3620;Parent=Msa0275750-mRNA-1 |
| chr2_3 | exon | 7915426 | 7915530 | 7915426 | ID=Msa0275750-mRNA-1:exon:3621;Parent=Msa0275750-mRNA-1 |
| chr2_3 | exon | 7915627 | 7915878 | 7915627 | ID=Msa0275750-mRNA-1:exon:3622;Parent=Msa0275750-mRNA-1 |
| chr2_3 | CDS | 7912636 | 7912820 | 7912636 | ID=Msa0275750-mRNA-1:cds;Parent=Msa0275750-mRNA-1 |
| chr2_3 | CDS | 7912926 | 7913002 | 7912926 | ID=Msa0275750-mRNA-1:cds;Parent=Msa0275750-mRNA-1 |
| chr2_3 | CDS | 7913720 | 7913811 | 7913720 | ID=Msa0275750-mRNA-1:cds;Parent=Msa0275750-mRNA-1 |
| chr2_3 | CDS | 7913905 | 7913964 | 7913905 | ID=Msa0275750-mRNA-1:cds;Parent=Msa0275750-mRNA-1 |
| chr2_3 | CDS | 7914074 | 7914292 | 7914074 | ID=Msa0275750-mRNA-1:cds;Parent=Msa0275750-mRNA-1 |
| chr2_3 | CDS | 7914375 | 7914451 | 7914375 | ID=Msa0275750-mRNA-1:cds;Parent=Msa0275750-mRNA-1 |
| chr2_3 | CDS | 7914555 | 7914624 | 7914555 | ID=Msa0275750-mRNA-1:cds;Parent=Msa0275750-mRNA-1 |
| chr2_3 | CDS | 7914697 | 7914810 | 7914697 | ID=Msa0275750-mRNA-1:cds;Parent=Msa0275750-mRNA-1 |
| chr2_3 | CDS | 7914895 | 7914961 | 7914895 | ID=Msa0275750-mRNA-1:cds;Parent=Msa0275750-mRNA-1 |
| chr2_3 | CDS | 7915426 | 7915530 | 7915426 | ID=Msa0275750-mRNA-1:cds;Parent=Msa0275750-mRNA-1 |
| chr2_3 | CDS | 7915627 | 7915751 | 7915627 | ID=Msa0275750-mRNA-1:cds;Parent=Msa0275750-mRNA-1 |
| chr2_3 | three_prime_UTR | 7915752 | 7915878 | 7915752 | ID=Msa0275750-mRNA-1:three_prime_utr;Parent=Msa0275750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
