Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238350 | XP_013462787.2 | 95.580 | 362 | 16 | 0 | 1 | 362 | 1 | 362 | 0.0 | 721 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238350 | sp|Q8LPL7|ADAL_ARATH | 64.306 | 353 | 122 | 2 | 5 | 357 | 3 | 351 | 2.32e-165 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238350 | A0A396J380 | 95.580 | 362 | 16 | 0 | 1 | 362 | 1 | 362 | 0.0 | 721 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039250 | Msa0238350 | 0.801640 | 8.184163e-49 | -8.615850e-47 |
| Msa0043500 | Msa0238350 | 0.808252 | 3.392737e-50 | -8.615850e-47 |
| Msa0097950 | Msa0238350 | 0.804083 | 2.561374e-49 | -8.615850e-47 |
| Msa0133720 | Msa0238350 | 0.818078 | 2.364267e-52 | -8.615850e-47 |
| Msa0133820 | Msa0238350 | 0.813179 | 2.917128e-51 | -8.615850e-47 |
| Msa0165300 | Msa0238350 | 0.804297 | 2.310918e-49 | -8.615850e-47 |
| Msa0193540 | Msa0238350 | 0.829973 | 3.813284e-55 | -8.615850e-47 |
| Msa0196440 | Msa0238350 | 0.863884 | 1.809393e-64 | -8.615850e-47 |
| Msa0198520 | Msa0238350 | 0.804723 | 1.883367e-49 | -8.615850e-47 |
| Msa0227230 | Msa0238350 | 0.819383 | 1.195613e-52 | -8.615850e-47 |
| Msa0235470 | Msa0238350 | 0.802664 | 5.039455e-49 | -8.615850e-47 |
| Msa0238350 | Msa0259270 | 0.803804 | 2.926997e-49 | -8.615850e-47 |
| Msa0238350 | Msa0274630 | 0.834336 | 3.178380e-56 | -8.615850e-47 |
| Msa0238350 | Msa0275750 | 0.842332 | 2.758739e-58 | -8.615850e-47 |
| Msa0238350 | Msa0314060 | 0.834226 | 3.388610e-56 | -8.615850e-47 |
| Msa0238350 | Msa0316210 | 0.838418 | 2.909717e-57 | -8.615850e-47 |
| Msa0238350 | Msa0318720 | 0.802532 | 5.366199e-49 | -8.615850e-47 |
| Msa0238350 | Msa0346990 | 0.802297 | 5.998168e-49 | -8.615850e-47 |
| Msa0238350 | Msa0392200 | 0.800014 | 1.758204e-48 | -8.615850e-47 |
| Msa0238350 | Msa0487780 | 0.804748 | 1.861573e-49 | -8.615850e-47 |
| Msa0238350 | Msa1128330 | 0.818265 | 2.145557e-52 | -8.615850e-47 |
| Msa0238350 | Msa1158660 | 0.813928 | 1.996581e-51 | -8.615850e-47 |
| Msa0238350 | Msa1280620 | 0.818640 | 1.764243e-52 | -8.615850e-47 |
| Msa0238350 | Msa1366300 | 0.801087 | 1.062607e-48 | -8.615850e-47 |
| Msa0238350 | Msa1426570 | 0.800183 | 1.624515e-48 | -8.615850e-47 |
| Msa0238350 | Msa1433220 | 0.807766 | 4.305401e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238350 | MtrunA17_Chr2g0288101 | 95.580 | 362 | 16 | 0 | 1 | 362 | 1 | 362 | 0.0 | 721 |
| Msa0238350 | MtrunA17_Chr4g0074591 | 69.315 | 365 | 98 | 3 | 2 | 357 | 11 | 370 | 0.0 | 511 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238350 | AT4G04880.1 | 64.306 | 353 | 122 | 2 | 5 | 357 | 3 | 351 | 2.36e-166 | 469 |
| Msa0238350 | AT4G04880.2 | 59.424 | 382 | 122 | 3 | 5 | 357 | 3 | 380 | 1.61e-160 | 455 |
| Msa0238350 | AT4G04880.3 | 64.364 | 275 | 91 | 3 | 5 | 279 | 3 | 270 | 6.10e-125 | 361 |
Find 58 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATAGAAGTTCACCATTT+TGG | 0.175562 | 2_2:+11790184 | Msa0238350:CDS |
| ATCAGATAATGTTGTCTATT+TGG | 0.205652 | 2_2:+11789166 | Msa0238350:CDS |
| TCTTTGTTTCTTTCTGAGTA+TGG | 0.214063 | 2_2:-11787936 | None:intergenic |
| GCACTAGAAATGAGGCATTT+AGG | 0.266579 | 2_2:+11789628 | Msa0238350:CDS |
| TAATTCAGTGTCAAAGAATA+TGG | 0.278836 | 2_2:+11790958 | Msa0238350:CDS |
| GTTGAAGTCTTCTAAAATTC+CGG | 0.298770 | 2_2:+11790033 | Msa0238350:CDS |
| CCATTGCATTTATCATTGTT+AGG | 0.349227 | 2_2:-11789435 | None:intergenic |
| TAGCTGCTTCTGTTGTTTCT+CGG | 0.362736 | 2_2:-11789506 | None:intergenic |
| AACAAGCATGTCCAATCCTT+TGG | 0.365045 | 2_2:-11789985 | None:intergenic |
| ATGTTGTCTATTTGGAGTTA+AGG | 0.369465 | 2_2:+11789174 | Msa0238350:CDS |
| ACAAGCATGTCCAATCCTTT+GGG | 0.373754 | 2_2:-11789984 | None:intergenic |
| AGCAAAAGAACATACCAAAA+TGG | 0.374049 | 2_2:-11790198 | None:intergenic |
| AAATATGCTGCTGATTCATT+TGG | 0.375776 | 2_2:+11790754 | Msa0238350:CDS |
| ATTCAGAGAAACGATTCAAT+TGG | 0.376629 | 2_2:+11789312 | Msa0238350:intron |
| ATGAGGCATTTAGGTGTAGT+TGG | 0.382284 | 2_2:+11789637 | Msa0238350:CDS |
| TGAGGCATTTAGGTGTAGTT+GGG | 0.382637 | 2_2:+11789638 | Msa0238350:CDS |
| TGTGAATTAGATCAAACAAT+TGG | 0.402845 | 2_2:-11788989 | None:intergenic |
| TGAGCATGCAGTTCAACCTT+TGG | 0.422911 | 2_2:-11787998 | None:intergenic |
| GAGTATATATTTGCAGATAA+TGG | 0.423955 | 2_2:+11790908 | Msa0238350:CDS |
| TTTGTTTGACATCAAACATC+AGG | 0.434436 | 2_2:+11790146 | Msa0238350:CDS |
| TATGTTGACGCTGTAATTGA+AGG | 0.451211 | 2_2:+11789351 | Msa0238350:CDS |
| TTCTTTAGGGTTGGGAAGGT+GGG | 0.457089 | 2_2:+11790856 | Msa0238350:intron |
| GAATTTCATCCCCAAAGGAT+TGG | 0.463264 | 2_2:+11789974 | Msa0238350:CDS |
| ATTCTTTAGGGTTGGGAAGG+TGG | 0.467717 | 2_2:+11790855 | Msa0238350:intron |
| GTGGATTTCATTCCAAAGAC+TGG | 0.471560 | 2_2:+11789399 | Msa0238350:CDS |
| TCTATTCTTTAGGGTTGGGA+AGG | 0.473258 | 2_2:+11790852 | Msa0238350:intron |
| GGGAAATGTTTGAACTATCA+AGG | 0.479942 | 2_2:+11790876 | Msa0238350:CDS |
| TGCTATAAATTTCTCTCAAG+TGG | 0.487457 | 2_2:+11788204 | Msa0238350:CDS |
| CATATGACTATATGTCAGTC+AGG | 0.494566 | 2_2:+11791025 | Msa0238350:three_prime_UTR |
| GTCTTTGAATGAAACTCAAA+AGG | 0.498893 | 2_2:+11788180 | Msa0238350:CDS |
| GAACTGCATGCTCACCTCAA+TGG | 0.502646 | 2_2:+11788007 | Msa0238350:CDS |
| CATATTGATATACCATTCAC+CGG | 0.502916 | 2_2:-11789686 | None:intergenic |
| TTGAGTTTCATTCAAAGACT+TGG | 0.504570 | 2_2:-11788176 | None:intergenic |
| GTAGTTGGGATTGATCTCTC+TGG | 0.509492 | 2_2:+11789652 | Msa0238350:CDS |
| AGAAACAACAGAAGCAGCTA+TGG | 0.509552 | 2_2:+11789509 | Msa0238350:CDS |
| CTGAAATTCGCACGAGAACA+AGG | 0.510435 | 2_2:+11789818 | Msa0238350:CDS |
| TCATCAGTACATAGGACTAA+AGG | 0.537069 | 2_2:-11790694 | None:intergenic |
| TCTCGTGCGAATTTCAGTGC+TGG | 0.552290 | 2_2:-11789812 | None:intergenic |
| CCTAACAATGATAAATGCAA+TGG | 0.553486 | 2_2:+11789435 | Msa0238350:CDS |
| TTGAAGATGAACACTGGAGA+AGG | 0.560642 | 2_2:+11790011 | Msa0238350:CDS |
| TGCTTGAATTTCATCCCCAA+AGG | 0.568885 | 2_2:+11789969 | Msa0238350:CDS |
| TGTTACAAGAATTACAAAAG+AGG | 0.569787 | 2_2:+11789034 | Msa0238350:CDS |
| ATCAGTTAGCTCGGTCGATG+TGG | 0.576039 | 2_2:+11789380 | Msa0238350:CDS |
| GTTACTTTGAAGATGAACAC+TGG | 0.595899 | 2_2:+11790005 | Msa0238350:CDS |
| TCAAGCTTGCACTAGAAATG+AGG | 0.601803 | 2_2:+11789620 | Msa0238350:CDS |
| TATTACAGATGAGCTTACAC+TGG | 0.611582 | 2_2:+11788956 | Msa0238350:intron |
| CAAGCATGTCCAATCCTTTG+GGG | 0.620210 | 2_2:-11789983 | None:intergenic |
| AGACTCTGATAGAACCATTG+AGG | 0.622072 | 2_2:-11788021 | None:intergenic |
| GGAGTTAAGGACTACTCCAA+AGG | 0.630426 | 2_2:+11789187 | Msa0238350:CDS |
| CACATGTGTCATCAGTACAT+AGG | 0.638450 | 2_2:-11790702 | None:intergenic |
| TTGGTGTCTCTCAATGCCAA+AGG | 0.639629 | 2_2:+11787982 | Msa0238350:CDS |
| AGGCGTAAGATCAGTTAGCT+CGG | 0.649204 | 2_2:+11789371 | Msa0238350:CDS |
| TCATGCAGCTTATTTGTACG+AGG | 0.651457 | 2_2:+11790663 | Msa0238350:intron |
| CTGCTTCTGTTGTTTCTCGG+CGG | 0.694637 | 2_2:-11789503 | None:intergenic |
| TGAACTATCAAGGAATGCTG+TGG | 0.695948 | 2_2:+11790886 | Msa0238350:CDS |
| ATTCAATACAAGTCTCTCTG+AGG | 0.710482 | 2_2:+11790726 | Msa0238350:CDS |
| TGTAACACTTCACTGCGGAG+AGG | 0.727183 | 2_2:+11789847 | Msa0238350:CDS |
| CTTAATGTAACACTTCACTG+CGG | 0.826513 | 2_2:+11789842 | Msa0238350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATGAAATAATTAATACATT+TGG | - | chr2_2:11790105-11790124 | None:intergenic | 15.0% |
| !!! | TAAATTGACTATATGTTTTT+TGG | + | chr2_2:11790301-11790320 | Msa0238350:intron | 15.0% |
| !! | TTATTTACAACTTTATGAAA+TGG | - | chr2_2:11790370-11790389 | None:intergenic | 15.0% |
| !!! | TGTAAGAGAATATTTTTATT+TGG | + | chr2_2:11791000-11791019 | Msa0238350:three_prime_UTR | 15.0% |
| !! | ATTCAGAAAAAAGAAAAGAA+GGG | - | chr2_2:11788075-11788094 | None:intergenic | 20.0% |
| !!! | TTTTATATTGACAATCAAAC+AGG | - | chr2_2:11788259-11788278 | None:intergenic | 20.0% |
| !! | TTTGATTGTCAATATAAAAC+TGG | + | chr2_2:11788260-11788279 | Msa0238350:intron | 20.0% |
| !!! | AGTTTGATTTTGTTAACAAA+AGG | + | chr2_2:11788456-11788475 | Msa0238350:intron | 20.0% |
| !! | AACACAAAATTCATCATATT+AGG | + | chr2_2:11788481-11788500 | Msa0238350:intron | 20.0% |
| !!! | TTTTATTTTAGGAACATCAT+AGG | + | chr2_2:11788541-11788560 | Msa0238350:intron | 20.0% |
| !!! | AGTAACATTTTTTTACTCTA+TGG | - | chr2_2:11788775-11788794 | None:intergenic | 20.0% |
| !! | AATACAATTGAAAATTCGAA+TGG | + | chr2_2:11788825-11788844 | Msa0238350:intron | 20.0% |
| !! | ATACAATTGAAAATTCGAAT+GGG | + | chr2_2:11788826-11788845 | Msa0238350:intron | 20.0% |
| !! | CTAGAAAAAAAATCATTGTT+AGG | + | chr2_2:11789463-11789482 | Msa0238350:CDS | 20.0% |
| !!! | AATCGCTTTTTAAATTTTGT+AGG | + | chr2_2:11789777-11789796 | Msa0238350:intron | 20.0% |
| !! | TCCTTCAATTAATTTAAGTA+AGG | + | chr2_2:11790072-11790091 | Msa0238350:intron | 20.0% |
| !! | ACCTTACTTAAATTAATTGA+AGG | - | chr2_2:11790076-11790095 | None:intergenic | 20.0% |
| !!! | TTTGATTGATTCTATATTCA+TGG | - | chr2_2:11790242-11790261 | None:intergenic | 20.0% |
| !! | TGTAAATAAACTTTCACTAA+AGG | + | chr2_2:11790381-11790400 | Msa0238350:intron | 20.0% |
| !!! | TTGTTTTTTGTCTATTCTTT+AGG | + | chr2_2:11790842-11790861 | Msa0238350:intron | 20.0% |
| !!! | TGTTTTTTGTCTATTCTTTA+GGG | + | chr2_2:11790843-11790862 | Msa0238350:intron | 20.0% |
| ! | ACAAAGAACAACAAGAAAAA+TGG | + | chr2_2:11787952-11787971 | Msa0238350:exon | 25.0% |
| ! | AAGAAAAGAAGGGAAATATT+TGG | - | chr2_2:11788065-11788084 | None:intergenic | 25.0% |
| ! | CATTCAGAAAAAAGAAAAGA+AGG | - | chr2_2:11788076-11788095 | None:intergenic | 25.0% |
| !!! | TTTCAAGTTTTCAATACCTT+TGG | + | chr2_2:11788345-11788364 | Msa0238350:intron | 25.0% |
| ! | TCAAAATCAATATCAACCAA+AGG | - | chr2_2:11788364-11788383 | None:intergenic | 25.0% |
| ! | ATTATTACACACATATGTGT+TGG | + | chr2_2:11788402-11788421 | Msa0238350:intron | 25.0% |
| ! | TCGACATATCATATATTTAG+CGG | - | chr2_2:11788679-11788698 | None:intergenic | 25.0% |
| ! | AGTAAAAAAATGTTACTGCT+GGG | + | chr2_2:11788778-11788797 | Msa0238350:intron | 25.0% |
| ! | TTAAGGACGAATGTAATATT+AGG | + | chr2_2:11788894-11788913 | Msa0238350:intron | 25.0% |
| ! | TGTGAATTAGATCAAACAAT+TGG | - | chr2_2:11788992-11789011 | None:intergenic | 25.0% |
| ! | TGTTACAAGAATTACAAAAG+AGG | + | chr2_2:11789034-11789053 | Msa0238350:CDS | 25.0% |
| ! | TGATGATAATAGCTAAAAAC+AGG | + | chr2_2:11789127-11789146 | Msa0238350:intron | 25.0% |
| ! | ATCAGATAATGTTGTCTATT+TGG | + | chr2_2:11789166-11789185 | Msa0238350:CDS | 25.0% |
| ! | ATTCAATAGAAATAAGAACG+CGG | - | chr2_2:11789241-11789260 | None:intergenic | 25.0% |
| !! | ATCTGATGTTTATTTGTTAC+AGG | + | chr2_2:11789597-11789616 | Msa0238350:intron | 25.0% |
| !! | ATTTCATCTTGACTATTTTC+AGG | + | chr2_2:11790117-11790136 | Msa0238350:intron | 25.0% |
| ! | AACTTTACAAAACATGTTGT+AGG | + | chr2_2:11790275-11790294 | Msa0238350:intron | 25.0% |
| !!! | GGACAGTATTTTTTTTATGT+TGG | + | chr2_2:11790322-11790341 | Msa0238350:intron | 25.0% |
| ! | TTTATGAAATGGCTTCAAAA+TGG | - | chr2_2:11790359-11790378 | None:intergenic | 25.0% |
| ! | GAGTATATATTTGCAGATAA+TGG | + | chr2_2:11790908-11790927 | Msa0238350:CDS | 25.0% |
| ! | TAATTCAGTGTCAAAGAATA+TGG | + | chr2_2:11790958-11790977 | Msa0238350:CDS | 25.0% |
| ! | TCTTTGTTTCTTTCTGAGTA+TGG | - | chr2_2:11787939-11787958 | None:intergenic | 30.0% |
| CAAGAAAAATGGAAGAGAAT+TGG | + | chr2_2:11787963-11787982 | Msa0238350:exon | 30.0% | |
| TTGAGTTTCATTCAAAGACT+TGG | - | chr2_2:11788179-11788198 | None:intergenic | 30.0% | |
| GTCTTTGAATGAAACTCAAA+AGG | + | chr2_2:11788180-11788199 | Msa0238350:CDS | 30.0% | |
| TGCTATAAATTTCTCTCAAG+TGG | + | chr2_2:11788204-11788223 | Msa0238350:CDS | 30.0% | |
| AACAGGAGAATACATACATT+TGG | - | chr2_2:11788242-11788261 | None:intergenic | 30.0% | |
| ACAAAAACACACAAACACAA+AGG | - | chr2_2:11788316-11788335 | None:intergenic | 30.0% | |
| GAGTAAAAAAATGTTACTGC+TGG | + | chr2_2:11788777-11788796 | Msa0238350:intron | 30.0% | |
| GTAAAAAAATGTTACTGCTG+GGG | + | chr2_2:11788779-11788798 | Msa0238350:intron | 30.0% | |
| GATCTTATACACAAGAACAT+GGG | + | chr2_2:11788848-11788867 | Msa0238350:intron | 30.0% | |
| CTTAAATATAAGACCCTCTT+GGG | - | chr2_2:11788879-11788898 | None:intergenic | 30.0% | |
| AGAATCAACAGAAGTAGATT+AGG | - | chr2_2:11788921-11788940 | None:intergenic | 30.0% | |
| !! | CTTCTGTTGATTCTTATATG+TGG | + | chr2_2:11788927-11788946 | Msa0238350:intron | 30.0% |
| CAAGAATTACAAAAGAGGTA+TGG | + | chr2_2:11789039-11789058 | Msa0238350:intron | 30.0% | |
| ! | ATGTTGTCTATTTGGAGTTA+AGG | + | chr2_2:11789174-11789193 | Msa0238350:CDS | 30.0% |
| AATTACACAATGATCTGCAT+TGG | - | chr2_2:11789216-11789235 | None:intergenic | 30.0% | |
| ATTCAGAGAAACGATTCAAT+TGG | + | chr2_2:11789312-11789331 | Msa0238350:intron | 30.0% | |
| !!! | ATTTTAGAATCTCCAGTCTT+TGG | - | chr2_2:11789414-11789433 | None:intergenic | 30.0% |
| CCATTGCATTTATCATTGTT+AGG | - | chr2_2:11789438-11789457 | None:intergenic | 30.0% | |
| CCTAACAATGATAAATGCAA+TGG | + | chr2_2:11789435-11789454 | Msa0238350:CDS | 30.0% | |
| CATATTGATATACCATTCAC+CGG | - | chr2_2:11789689-11789708 | None:intergenic | 30.0% | |
| !! | GTTGAAGTCTTCTAAAATTC+CGG | + | chr2_2:11790033-11790052 | Msa0238350:CDS | 30.0% |
| TTTGTTTGACATCAAACATC+AGG | + | chr2_2:11790146-11790165 | Msa0238350:CDS | 30.0% | |
| ! | TCTATAGAAGTTCACCATTT+TGG | + | chr2_2:11790184-11790203 | Msa0238350:CDS | 30.0% |
| AGCAAAAGAACATACCAAAA+TGG | - | chr2_2:11790201-11790220 | None:intergenic | 30.0% | |
| ! | TTGGTATGTTCTTTTGCTTA+TGG | + | chr2_2:11790203-11790222 | Msa0238350:intron | 30.0% |
| TTCAACAAGTAGTTCATGTT+TGG | + | chr2_2:11790410-11790429 | Msa0238350:intron | 30.0% | |
| !! | AAATATGCTGCTGATTCATT+TGG | + | chr2_2:11790754-11790773 | Msa0238350:CDS | 30.0% |
| !!! | TTTTGTCTATTCTTTAGGGT+TGG | + | chr2_2:11790847-11790866 | Msa0238350:intron | 30.0% |
| !! | TTTGTCTATTCTTTAGGGTT+GGG | + | chr2_2:11790848-11790867 | Msa0238350:intron | 30.0% |
| AAGACACAAAGACAAAGGTT+AGG | - | chr2_2:11788428-11788447 | None:intergenic | 35.0% | |
| AACACAAGACACAAAGACAA+AGG | - | chr2_2:11788433-11788452 | None:intergenic | 35.0% | |
| CAAAACATGACATGACTACT+TGG | + | chr2_2:11788589-11788608 | Msa0238350:intron | 35.0% | |
| ! | ATCATATATTTAGCGGACAG+AGG | - | chr2_2:11788672-11788691 | None:intergenic | 35.0% |
| GGATCTTATACACAAGAACA+TGG | + | chr2_2:11788847-11788866 | Msa0238350:intron | 35.0% | |
| CCTTAAATATAAGACCCTCT+TGG | - | chr2_2:11788880-11788899 | None:intergenic | 35.0% | |
| ! | CCAAGAGGGTCTTATATTTA+AGG | + | chr2_2:11788877-11788896 | Msa0238350:intron | 35.0% |
| TATTACAGATGAGCTTACAC+TGG | + | chr2_2:11788956-11788975 | Msa0238350:intron | 35.0% | |
| TAGCTAAAAACAGGTCATTG+AGG | + | chr2_2:11789136-11789155 | Msa0238350:intron | 35.0% | |
| TATGTTGACGCTGTAATTGA+AGG | + | chr2_2:11789351-11789370 | Msa0238350:CDS | 35.0% | |
| !!! | ATATACCATTCACCGGTTTT+TGG | - | chr2_2:11789682-11789701 | None:intergenic | 35.0% |
| CTTAATGTAACACTTCACTG+CGG | + | chr2_2:11789842-11789861 | Msa0238350:CDS | 35.0% | |
| ! | ATTGCGTATCTAAAACCACA+AGG | - | chr2_2:11789930-11789949 | None:intergenic | 35.0% |
| !! | GTTTTAGATACGCAATTCGA+AGG | + | chr2_2:11789934-11789953 | Msa0238350:intron | 35.0% |
| ! | GTTACTTTGAAGATGAACAC+TGG | + | chr2_2:11790005-11790024 | Msa0238350:CDS | 35.0% |
| CTTCTGTACATGTTAAGTGT+AGG | + | chr2_2:11790580-11790599 | Msa0238350:intron | 35.0% | |
| CAAGAACATTGTGTTAAGAG+AGG | - | chr2_2:11790642-11790661 | None:intergenic | 35.0% | |
| CTCTCTTAACACAATGTTCT+TGG | + | chr2_2:11790640-11790659 | Msa0238350:intron | 35.0% | |
| TCATCAGTACATAGGACTAA+AGG | - | chr2_2:11790697-11790716 | None:intergenic | 35.0% | |
| ATTCAATACAAGTCTCTCTG+AGG | + | chr2_2:11790726-11790745 | Msa0238350:CDS | 35.0% | |
| GGGAAATGTTTGAACTATCA+AGG | + | chr2_2:11790876-11790895 | Msa0238350:CDS | 35.0% | |
| CATATGACTATATGTCAGTC+AGG | + | chr2_2:11791025-11791044 | Msa0238350:three_prime_UTR | 35.0% | |
| AGACTCTGATAGAACCATTG+AGG | - | chr2_2:11788024-11788043 | None:intergenic | 40.0% | |
| AACATGGGAAAATCCCAAGA+GGG | + | chr2_2:11788863-11788882 | Msa0238350:intron | 40.0% | |
| TGATCTGCATTGGATACCTT+TGG | - | chr2_2:11789206-11789225 | None:intergenic | 40.0% | |
| GTGGATTTCATTCCAAAGAC+TGG | + | chr2_2:11789399-11789418 | Msa0238350:CDS | 40.0% | |
| !! | TAGCTGCTTCTGTTGTTTCT+CGG | - | chr2_2:11789509-11789528 | None:intergenic | 40.0% |
| AGAAACAACAGAAGCAGCTA+TGG | + | chr2_2:11789509-11789528 | Msa0238350:CDS | 40.0% | |
| TCAAGCTTGCACTAGAAATG+AGG | + | chr2_2:11789620-11789639 | Msa0238350:CDS | 40.0% | |
| ! | GCACTAGAAATGAGGCATTT+AGG | + | chr2_2:11789628-11789647 | Msa0238350:CDS | 40.0% |
| ! | ATGAGGCATTTAGGTGTAGT+TGG | + | chr2_2:11789637-11789656 | Msa0238350:CDS | 40.0% |
| ! | TGAGGCATTTAGGTGTAGTT+GGG | + | chr2_2:11789638-11789657 | Msa0238350:CDS | 40.0% |
| ! | CTCTCTGGAAATCCAAAAAC+CGG | + | chr2_2:11789667-11789686 | Msa0238350:CDS | 40.0% |
| GAAATCCAAAAACCGGTGAA+TGG | + | chr2_2:11789674-11789693 | Msa0238350:CDS | 40.0% | |
| GGTTTATTCTTCTGACCTTG+TGG | + | chr2_2:11789912-11789931 | Msa0238350:intron | 40.0% | |
| TGCTTGAATTTCATCCCCAA+AGG | + | chr2_2:11789969-11789988 | Msa0238350:CDS | 40.0% | |
| GAATTTCATCCCCAAAGGAT+TGG | + | chr2_2:11789974-11789993 | Msa0238350:CDS | 40.0% | |
| ACAAGCATGTCCAATCCTTT+GGG | - | chr2_2:11789987-11790006 | None:intergenic | 40.0% | |
| AACAAGCATGTCCAATCCTT+TGG | - | chr2_2:11789988-11790007 | None:intergenic | 40.0% | |
| TTGAAGATGAACACTGGAGA+AGG | + | chr2_2:11790011-11790030 | Msa0238350:CDS | 40.0% | |
| TCATGCAGCTTATTTGTACG+AGG | + | chr2_2:11790663-11790682 | Msa0238350:intron | 40.0% | |
| CACATGTGTCATCAGTACAT+AGG | - | chr2_2:11790705-11790724 | None:intergenic | 40.0% | |
| !! | ATGCTGCTGATTCATTTGGT+AGG | + | chr2_2:11790758-11790777 | Msa0238350:intron | 40.0% |
| !! | TCTATTCTTTAGGGTTGGGA+AGG | + | chr2_2:11790852-11790871 | Msa0238350:intron | 40.0% |
| TGAACTATCAAGGAATGCTG+TGG | + | chr2_2:11790886-11790905 | Msa0238350:CDS | 40.0% | |
| ! | TTGGTGTCTCTCAATGCCAA+AGG | + | chr2_2:11787982-11788001 | Msa0238350:CDS | 45.0% |
| TGAGCATGCAGTTCAACCTT+TGG | - | chr2_2:11788001-11788020 | None:intergenic | 45.0% | |
| TGTTACTGCTGGGGATATGT+TGG | + | chr2_2:11788788-11788807 | Msa0238350:intron | 45.0% | |
| GAACATGGGAAAATCCCAAG+AGG | + | chr2_2:11788862-11788881 | Msa0238350:intron | 45.0% | |
| GGAGTTAAGGACTACTCCAA+AGG | + | chr2_2:11789187-11789206 | Msa0238350:CDS | 45.0% | |
| AGGCGTAAGATCAGTTAGCT+CGG | + | chr2_2:11789371-11789390 | Msa0238350:CDS | 45.0% | |
| GTAGTTGGGATTGATCTCTC+TGG | + | chr2_2:11789652-11789671 | Msa0238350:CDS | 45.0% | |
| CTGAAATTCGCACGAGAACA+AGG | + | chr2_2:11789818-11789837 | Msa0238350:CDS | 45.0% | |
| CAAGCATGTCCAATCCTTTG+GGG | - | chr2_2:11789986-11790005 | None:intergenic | 45.0% | |
| GGAGCATGCAAAAGTCTAAC+CGG | - | chr2_2:11790055-11790074 | None:intergenic | 45.0% | |
| !! | ATTCTTTAGGGTTGGGAAGG+TGG | + | chr2_2:11790855-11790874 | Msa0238350:intron | 45.0% |
| !! | TTCTTTAGGGTTGGGAAGGT+GGG | + | chr2_2:11790856-11790875 | Msa0238350:intron | 45.0% |
| !!! | AATTATTATACTTTTATTTT+AGG | + | chr2_2:11788530-11788549 | Msa0238350:intron | 5.0% |
| GAACTGCATGCTCACCTCAA+TGG | + | chr2_2:11788007-11788026 | Msa0238350:CDS | 50.0% | |
| ATCAGTTAGCTCGGTCGATG+TGG | + | chr2_2:11789380-11789399 | Msa0238350:CDS | 50.0% | |
| !! | CTGCTTCTGTTGTTTCTCGG+CGG | - | chr2_2:11789506-11789525 | None:intergenic | 50.0% |
| TCTCGTGCGAATTTCAGTGC+TGG | - | chr2_2:11789815-11789834 | None:intergenic | 50.0% | |
| TGTAACACTTCACTGCGGAG+AGG | + | chr2_2:11789847-11789866 | Msa0238350:CDS | 50.0% | |
| ! | CTTGTTCTGAGTTTCGCGAC+TGG | + | chr2_2:11789891-11789910 | Msa0238350:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 11787869 | 11791115 | 11787869 | ID=Msa0238350;Name=Msa0238350 |
| chr2_2 | mRNA | 11787869 | 11791115 | 11787869 | ID=Msa0238350-mRNA-1;Parent=Msa0238350;Name=Msa0238350-mRNA-1;_AED=0.18;_eAED=0.18;_QI=102|1|1|1|1|1|11|127|362 |
| chr2_2 | exon | 11787869 | 11788053 | 11787869 | ID=Msa0238350-mRNA-1:exon:5109;Parent=Msa0238350-mRNA-1 |
| chr2_2 | exon | 11788168 | 11788244 | 11788168 | ID=Msa0238350-mRNA-1:exon:5110;Parent=Msa0238350-mRNA-1 |
| chr2_2 | exon | 11788964 | 11789055 | 11788964 | ID=Msa0238350-mRNA-1:exon:5111;Parent=Msa0238350-mRNA-1 |
| chr2_2 | exon | 11789149 | 11789208 | 11789149 | ID=Msa0238350-mRNA-1:exon:5112;Parent=Msa0238350-mRNA-1 |
| chr2_2 | exon | 11789318 | 11789536 | 11789318 | ID=Msa0238350-mRNA-1:exon:5113;Parent=Msa0238350-mRNA-1 |
| chr2_2 | exon | 11789619 | 11789695 | 11789619 | ID=Msa0238350-mRNA-1:exon:5114;Parent=Msa0238350-mRNA-1 |
| chr2_2 | exon | 11789799 | 11789868 | 11789799 | ID=Msa0238350-mRNA-1:exon:5115;Parent=Msa0238350-mRNA-1 |
| chr2_2 | exon | 11789941 | 11790054 | 11789941 | ID=Msa0238350-mRNA-1:exon:5116;Parent=Msa0238350-mRNA-1 |
| chr2_2 | exon | 11790139 | 11790205 | 11790139 | ID=Msa0238350-mRNA-1:exon:5117;Parent=Msa0238350-mRNA-1 |
| chr2_2 | exon | 11790671 | 11790775 | 11790671 | ID=Msa0238350-mRNA-1:exon:5118;Parent=Msa0238350-mRNA-1 |
| chr2_2 | exon | 11790864 | 11791115 | 11790864 | ID=Msa0238350-mRNA-1:exon:5119;Parent=Msa0238350-mRNA-1 |
| chr2_2 | five_prime_UTR | 11787869 | 11787970 | 11787869 | ID=Msa0238350-mRNA-1:five_prime_utr;Parent=Msa0238350-mRNA-1 |
| chr2_2 | CDS | 11787971 | 11788053 | 11787971 | ID=Msa0238350-mRNA-1:cds;Parent=Msa0238350-mRNA-1 |
| chr2_2 | CDS | 11788168 | 11788244 | 11788168 | ID=Msa0238350-mRNA-1:cds;Parent=Msa0238350-mRNA-1 |
| chr2_2 | CDS | 11788964 | 11789055 | 11788964 | ID=Msa0238350-mRNA-1:cds;Parent=Msa0238350-mRNA-1 |
| chr2_2 | CDS | 11789149 | 11789208 | 11789149 | ID=Msa0238350-mRNA-1:cds;Parent=Msa0238350-mRNA-1 |
| chr2_2 | CDS | 11789318 | 11789536 | 11789318 | ID=Msa0238350-mRNA-1:cds;Parent=Msa0238350-mRNA-1 |
| chr2_2 | CDS | 11789619 | 11789695 | 11789619 | ID=Msa0238350-mRNA-1:cds;Parent=Msa0238350-mRNA-1 |
| chr2_2 | CDS | 11789799 | 11789868 | 11789799 | ID=Msa0238350-mRNA-1:cds;Parent=Msa0238350-mRNA-1 |
| chr2_2 | CDS | 11789941 | 11790054 | 11789941 | ID=Msa0238350-mRNA-1:cds;Parent=Msa0238350-mRNA-1 |
| chr2_2 | CDS | 11790139 | 11790205 | 11790139 | ID=Msa0238350-mRNA-1:cds;Parent=Msa0238350-mRNA-1 |
| chr2_2 | CDS | 11790671 | 11790775 | 11790671 | ID=Msa0238350-mRNA-1:cds;Parent=Msa0238350-mRNA-1 |
| chr2_2 | CDS | 11790864 | 11790988 | 11790864 | ID=Msa0238350-mRNA-1:cds;Parent=Msa0238350-mRNA-1 |
| chr2_2 | three_prime_UTR | 11790989 | 11791115 | 11790989 | ID=Msa0238350-mRNA-1:three_prime_utr;Parent=Msa0238350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
