AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0749770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0749770 MtrunA17_Chr5g0396381 78.158 760 73 8 1 742 1 685 0.0 1144
Msa0749770 MtrunA17_Chr3g0090551 35.132 760 364 28 1 732 1 659 1.29e-87 290
Msa0749770 MtrunA17_Chr4g0020571 45.033 302 146 7 445 737 342 632 8.62e-63 222
Msa0749770 MtrunA17_Chr4g0020571 43.933 239 103 12 158 387 128 344 7.37e-36 144
Msa0749770 MtrunA17_Chr5g0445571 28.276 435 212 13 178 581 111 476 1.28e-30 127
Msa0749770 MtrunA17_Chr3g0101151 49.242 132 54 4 450 581 335 453 1.11e-25 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0749770 AT5G12440.4 38.556 734 314 32 1 709 1 622 1.71e-111 352
Msa0749770 AT5G12440.11 38.556 734 314 32 1 709 1 622 1.71e-111 352
Msa0749770 AT5G12440.12 38.556 734 314 32 1 709 1 622 1.71e-111 352
Msa0749770 AT5G12440.7 38.556 734 314 32 1 709 1 622 1.71e-111 352
Msa0749770 AT5G12440.1 38.556 734 314 32 1 709 1 622 1.71e-111 352
Msa0749770 AT5G12440.9 38.556 734 314 32 1 709 1 622 1.71e-111 352
Msa0749770 AT5G12440.2 38.556 734 314 32 1 709 1 622 1.71e-111 352
Msa0749770 AT5G12440.3 38.556 734 314 32 1 709 32 653 1.82e-111 353
Msa0749770 AT5G12440.10 38.556 734 314 32 1 709 32 653 1.82e-111 353
Msa0749770 AT5G12440.8 38.556 734 314 32 1 709 32 653 1.82e-111 353
Msa0749770 AT5G12440.5 38.556 734 314 32 1 709 32 653 1.82e-111 353
Msa0749770 AT5G12440.6 38.556 734 314 32 1 709 32 653 1.82e-111 353
Msa0749770 AT3G21100.2 41.071 392 161 18 7 387 7 339 1.28e-57 207
Msa0749770 AT3G21100.2 47.909 263 102 9 446 701 338 572 2.02e-55 201
Msa0749770 AT3G21100.1 41.071 392 161 18 7 387 7 339 1.28e-57 207
Msa0749770 AT3G21100.1 47.909 263 102 9 446 701 338 572 2.02e-55 201
Msa0749770 AT3G21100.4 41.582 392 159 19 7 387 7 339 1.50e-57 206
Msa0749770 AT3G21100.4 47.348 264 103 9 446 701 338 573 1.16e-54 198
Msa0749770 AT3G21100.3 41.582 392 159 19 7 387 7 339 1.50e-57 206
Msa0749770 AT3G21100.3 47.348 264 103 9 446 701 338 573 1.16e-54 198
Msa0749770 AT1G51520.2 30.791 708 266 29 7 707 7 497 1.32e-56 202
Msa0749770 AT1G51520.1 32.753 574 215 24 7 575 7 414 2.47e-54 193
Msa0749770 AT3G51950.1 39.796 294 111 9 446 730 278 514 7.33e-42 160
Msa0749770 AT3G51950.1 42.778 180 75 9 210 387 126 279 2.33e-23 105
Msa0749770 AT3G51950.1 41.489 94 49 3 1 92 1 90 1.86e-11 67.8
Msa0749770 AT3G51950.3 39.796 294 111 9 446 730 278 514 7.33e-42 160
Msa0749770 AT3G51950.3 42.778 180 75 9 210 387 126 279 2.33e-23 105
Msa0749770 AT3G51950.3 41.489 94 49 3 1 92 1 90 1.86e-11 67.8
Msa0749770 AT3G51950.2 39.796 294 111 9 446 730 278 514 7.33e-42 160
Msa0749770 AT3G51950.2 42.778 180 75 9 210 387 126 279 2.33e-23 105
Msa0749770 AT3G51950.2 41.489 94 49 3 1 92 1 90 1.86e-11 67.8
Msa0749770 AT3G51950.4 39.796 294 111 9 446 730 278 514 7.33e-42 160
Msa0749770 AT3G51950.4 42.778 180 75 9 210 387 126 279 2.33e-23 105
Msa0749770 AT3G51950.4 41.489 94 49 3 1 92 1 90 1.86e-11 67.8
Msa0749770 AT3G63450.6 49.367 158 51 3 446 603 67 195 3.02e-35 136
Msa0749770 AT3G63450.7 49.367 158 53 3 446 603 175 305 1.86e-34 135
Msa0749770 AT3G63450.2 49.367 158 51 3 446 603 175 303 3.33e-34 135
Msa0749770 AT3G63450.1 49.367 158 51 3 446 603 175 303 3.33e-34 135
Msa0749770 AT3G63450.3 49.367 158 53 3 446 603 175 305 3.39e-34 135
Msa0749770 AT3G63450.4 49.367 158 53 3 446 603 175 305 3.39e-34 135
Msa0749770 AT3G63450.5 49.367 158 53 3 446 603 175 305 3.39e-34 135
Msa0749770 AT2G05160.2 67.797 59 19 0 446 504 337 395 4.58e-19 92.0
Msa0749770 AT2G05160.1 67.797 59 19 0 446 504 337 395 4.58e-19 92.0
Msa0749770 AT2G05160.3 67.797 59 19 0 446 504 337 395 6.46e-19 91.3

Find 226 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGTTTCTTGCTATGGTTTC+TGG 0.060082 5_2:+3276709 Msa0749770:CDS
GACTCTTCAGCCTCCTTTCT+TGG 0.133175 5_2:-3278843 None:intergenic
GTTTGTCACCTTTGTCTTTC+CGG 0.179944 5_2:+3278299 Msa0749770:CDS
CTCACTTCTGCTGGTTCTTT+AGG 0.186781 5_2:+3279106 Msa0749770:CDS
GGATTAAACTTTGGACTAAT+AGG 0.200781 5_2:-3275907 None:intergenic
CTATGATGAATAACATAAAA+TGG 0.205709 5_2:-3280026 None:intergenic
TTTGGACTAATAGGGTTCTT+TGG 0.231605 5_2:-3275898 None:intergenic
TCTTCATAACCTTGCTATTA+GGG 0.243813 5_2:+3275681 Msa0749770:CDS
GCAAGAAACTCATTCCTTTC+GGG 0.247828 5_2:-3276697 None:intergenic
CCTTCACCTCTTAACCCTAT+TGG 0.270082 5_2:+3275745 Msa0749770:CDS
TTCTTCATAACCTTGCTATT+AGG 0.270313 5_2:+3275680 Msa0749770:CDS
GCCTCCTTTCTTGGAGTTCA+AGG 0.288088 5_2:-3278834 None:intergenic
GGTTGATCCGCGTCTTGAAA+TGG 0.288113 5_2:+3276095 Msa0749770:CDS
GAAGAATATTTCAACATTAC+TGG 0.303045 5_2:+3276664 Msa0749770:CDS
ATATTCTCATAAGACATTAA+AGG 0.311072 5_2:-3275928 None:intergenic
TATCTTATTGAGAAGGAAAA+TGG 0.311434 5_2:+3278783 Msa0749770:CDS
TCTCTCTGTTGGTGCTCCTT+TGG 0.323983 5_2:+3278915 Msa0749770:CDS
ATCGGATTATTCTTGAAATC+TGG 0.325085 5_2:-3278874 None:intergenic
AGACAAAAGCAAAAGAAAAT+AGG 0.326156 5_2:-3280123 None:intergenic
TCTGCAAATGATGCTAGTTT+TGG 0.328687 5_2:+3276186 Msa0749770:CDS
GCTGTTGGTGGCAGTGGTGC+TGG 0.330637 5_2:+3275958 Msa0749770:CDS
CATCACCTTCTGGTAATGTT+TGG 0.334098 5_2:+3275860 Msa0749770:CDS
AGCAAGAAACTCATTCCTTT+CGG 0.335824 5_2:-3276698 None:intergenic
TACCAGCAAAAGCGCATGTT+TGG 0.336745 5_2:+3278276 Msa0749770:CDS
TGCTGAGAGTGGGAATTTAA+AGG 0.339269 5_2:+3279198 Msa0749770:CDS
GATTAAACTTTGGACTAATA+GGG 0.340959 5_2:-3275906 None:intergenic
AAGATGTTTCGGAGTACTTC+AGG 0.343875 5_2:+3276800 Msa0749770:CDS
GTCGTCTAACGGCGATGATT+TGG 0.347901 5_2:+3276074 Msa0749770:CDS
TTACCAGTAGCCGTAGGTTT+TGG 0.348499 5_2:-3275401 None:intergenic
AGTTTCTTGCTATGGTTTCT+GGG 0.349367 5_2:+3276710 Msa0749770:CDS
TTTAAGTTCTTTACAATTCA+AGG 0.357372 5_2:+3279522 Msa0749770:exon
GATGAAGTGATTCTTCCAAT+AGG 0.362935 5_2:-3275760 None:intergenic
CACGTGAGTCACATATGAAA+TGG 0.366446 5_2:-3278356 None:intergenic
AAATCTCCTTGGATGTTATC+AGG 0.366797 5_2:-3278985 None:intergenic
GATGAAAGTGGATTGGGATT+TGG 0.371765 5_2:+3276213 Msa0749770:CDS
TTCACCCAAGTTTGAGGGAT+TGG 0.382468 5_2:+3276341 Msa0749770:CDS
ATTCAAAGATGAAGATGTTT+CGG 0.383022 5_2:+3276789 Msa0749770:CDS
AATAATTTGTTGTCTCAGAT+TGG 0.396338 5_2:-3280061 None:intergenic
ACCATGAACAAACTTACAAT+TGG 0.396580 5_2:-3276283 None:intergenic
CTCTCTGACGCTTCAAAGAT+AGG 0.396969 5_2:+3275292 Msa0749770:five_prime_UTR
GACATTAAAGGATTAAACTT+TGG 0.397652 5_2:-3275916 None:intergenic
AAATCTTCTCCTAGAGGAAC+TGG 0.399520 5_2:+3275802 Msa0749770:CDS
TATTAGGGTAAAGACCCATT+TGG 0.399912 5_2:+3275696 Msa0749770:CDS
GAACAAGTTCATATTCTTCA+AGG 0.400230 5_2:-3275633 None:intergenic
CGCTTTAAAGAGAATATTTG+CGG 0.404246 5_2:+3276974 Msa0749770:CDS
TGAATCGACAACATCTGCTT+CGG 0.405313 5_2:+3279481 Msa0749770:CDS
AGGAACCCTTCATCACCTTC+TGG 0.405702 5_2:+3275850 Msa0749770:CDS
TCCAATTGTAAGTTTGTTCA+TGG 0.406070 5_2:+3276282 Msa0749770:CDS
GTTGATCCGCGTCTTGAAAT+GGG 0.407371 5_2:+3276096 Msa0749770:CDS
TGGGCGTTGGTGGTCAGAAT+TGG 0.414377 5_2:+3276115 Msa0749770:CDS
TTAAGAGGTGAAGGTGAAGA+AGG 0.415332 5_2:-3275736 None:intergenic
ATTAGGGTAAAGACCCATTT+GGG 0.415903 5_2:+3275697 Msa0749770:CDS
GTACTCTCATTAGCCACTTC+CGG 0.418314 5_2:-3279428 None:intergenic
ATGCTTCTCTAGGATGATCT+AGG 0.420612 5_2:-3279860 None:intergenic
ATATTTCAACATTACTGGTC+GGG 0.426560 5_2:+3276669 Msa0749770:CDS
CGCAAATGCTGCCGCAGCCA+CGG 0.428719 5_2:-3276635 None:intergenic
TGAATTGTAAAGAACTTAAA+CGG 0.431400 5_2:-3279519 None:intergenic
GAATCGACAACATCTGCTTC+GGG 0.431778 5_2:+3279482 Msa0749770:CDS
ACAACCAATGTTCTTTCAGT+TGG 0.432665 5_2:-3277718 None:intergenic
GATTCGATTGATGCAAATTC+CGG 0.432753 5_2:+3276306 Msa0749770:CDS
TTGTTCCAATCCCTCAAACT+TGG 0.434886 5_2:-3276346 None:intergenic
ACGTGAGTCACATATGAAAT+GGG 0.436440 5_2:-3278355 None:intergenic
GAGTAAAGGGTATCAAGAAA+TGG 0.437128 5_2:-3275448 None:intergenic
CAAGGTGCTGTTGGTGGCAG+TGG 0.437766 5_2:+3275952 Msa0749770:CDS
ATGAAGTGATTCTTCCAATA+GGG 0.438078 5_2:-3275759 None:intergenic
CAAATTGCTGCTGCTGATGT+TGG 0.441947 5_2:-3278510 None:intergenic
TGTTGGTTCACCCAAGTTTG+AGG 0.444572 5_2:+3276335 Msa0749770:CDS
GGTGTTGATGAAAGTGGATT+GGG 0.445623 5_2:+3276207 Msa0749770:CDS
AGCATCAGACCAGGGAGCAC+AGG 0.445794 5_2:-3277042 None:intergenic
ATTCTTCCAATAGGGTTAAG+AGG 0.447622 5_2:-3275751 None:intergenic
ACCAGCAAAAGCGCATGTTT+GGG 0.448689 5_2:+3278277 Msa0749770:CDS
GTTGGTTCACCCAAGTTTGA+GGG 0.449991 5_2:+3276336 Msa0749770:CDS
AAGAGGCAAGCAAGGGGAGG+GGG 0.450881 5_2:+3279645 Msa0749770:three_prime_UTR
AATGCTTGAAAGAGAGTAAA+GGG 0.455379 5_2:-3275461 None:intergenic
TCTTTGAATGTGCTTTCAGC+AGG 0.457800 5_2:-3276775 None:intergenic
TGGTGTTGATGAAAGTGGAT+TGG 0.458084 5_2:+3276206 Msa0749770:CDS
GGTAAGGAATTCTCACATCT+TGG 0.459599 5_2:-3278257 None:intergenic
GCTGCATCACAACTTGCTGC+TGG 0.462022 5_2:+3276420 Msa0749770:CDS
TAGATAGGTTCATACCCAAA+TGG 0.462403 5_2:-3275711 None:intergenic
CGTCTTGAAATGGGCGTTGG+TGG 0.465802 5_2:+3276105 Msa0749770:CDS
TATGATGAATAACATAAAAT+GGG 0.467432 5_2:-3280025 None:intergenic
TAAGAGGTGAAGGTGAAGAA+GGG 0.469413 5_2:-3275735 None:intergenic
TGATTTCTCTCCACCGGAAG+TGG 0.471635 5_2:+3279415 Msa0749770:CDS
AATAGGGTTCTTTGGAAAAG+AGG 0.473814 5_2:-3275890 None:intergenic
ATCTGCCGCGAAGCCGAGTT+AGG 0.473872 5_2:-3276739 None:intergenic
CACAGGCAAAACCACTTTCA+TGG 0.474335 5_2:-3277025 None:intergenic
AAGGAATGAGTTTCTTGCTA+TGG 0.474746 5_2:+3276702 Msa0749770:CDS
GCTACTGCTGCTGCTGAGAG+TGG 0.476207 5_2:+3279187 Msa0749770:CDS
AAGGTGAAGAAGGGGTAGAT+AGG 0.478323 5_2:-3275726 None:intergenic
CACTGGGCACACCATGAAAG+TGG 0.478966 5_2:+3277014 Msa0749770:CDS
AGTGGCAGCCTCACTTCTGC+TGG 0.479574 5_2:+3279097 Msa0749770:CDS
TTTAGCATGTTGTCCTGACC+AGG 0.479663 5_2:+3275657 Msa0749770:CDS
AGGTTATGAAGAACCTGGTC+AGG 0.480573 5_2:-3275670 None:intergenic
CCACCAAAACCTACGGCTAC+TGG 0.483036 5_2:+3275398 Msa0749770:five_prime_UTR
GAGAAGGAAAATGGAGGAGC+AGG 0.484754 5_2:+3278792 Msa0749770:CDS
CTAGAGAAGCATCAAAACTA+AGG 0.485524 5_2:+3279871 Msa0749770:three_prime_UTR
CTGCGCTGGTGGTGGTGAAT+CGG 0.486467 5_2:-3278892 None:intergenic
GGTGAAGCAAAGAGACTGTC+AGG 0.486964 5_2:-3279365 None:intergenic
AAGATGTCAACTTACTTGTC+AGG 0.488252 5_2:-3278414 None:intergenic
TCCGTCTGATTTCTCTCCAC+CGG 0.488582 5_2:+3279409 Msa0749770:CDS
AGGTGCTGCATCTGAGCAGC+AGG 0.492634 5_2:+3279126 Msa0749770:CDS
AGAAAATAGGTACATAATGA+TGG 0.493862 5_2:-3280110 None:intergenic
ATGTACTTGTCGTACGATAC+CGG 0.495797 5_2:-3276453 None:intergenic
ACAAGAGGCAAGCAAGGGGA+GGG 0.496163 5_2:+3279643 Msa0749770:three_prime_UTR
GCAAATTCCGGTGCTGTTGT+TGG 0.496350 5_2:+3276318 Msa0749770:CDS
GAGAAATTTGATTACCAGGA+TGG 0.500480 5_2:-3278597 None:intergenic
TTACCAGGATGGAAATCAAA+AGG 0.503183 5_2:-3278586 None:intergenic
GCTTCACCAACAAAAGCAGC+TGG 0.504326 5_2:+3279380 Msa0749770:CDS
CAAGAGGCAAGCAAGGGGAG+GGG 0.506271 5_2:+3279644 Msa0749770:three_prime_UTR
ACTAACCTGTAAAATCTCCT+TGG 0.506306 5_2:-3278996 None:intergenic
AGATAGGTTCATACCCAAAT+GGG 0.506648 5_2:-3275710 None:intergenic
CATGTCTTTACTTTGCTAGA+GGG 0.506660 5_2:+3276244 Msa0749770:CDS
AATATGACTCTCACTGTCTC+CGG 0.508178 5_2:-3278318 None:intergenic
TCAACATTACTGGTCGGGGC+AGG 0.511014 5_2:+3276674 Msa0749770:CDS
ATAGGGTTCTTTGGAAAAGA+GGG 0.511296 5_2:-3275889 None:intergenic
GGTGGTCAGAATTGGATCTC+TGG 0.511430 5_2:+3276123 Msa0749770:CDS
CTACTGCTGCTGCTGAGAGT+GGG 0.512956 5_2:+3279188 Msa0749770:CDS
TTGTGTGAAATTGCGCGGAT+AGG 0.513544 5_2:+3280168 Msa0749770:three_prime_UTR
TAATCACCATTATTAACCCT+TGG 0.513837 5_2:-3276000 None:intergenic
TGTTCCAATCCCTCAAACTT+GGG 0.514806 5_2:-3276345 None:intergenic
ACATTACCAGAAGGTGATGA+AGG 0.516499 5_2:-3275856 None:intergenic
GAATGTGCTTTCAGCAGGAA+AGG 0.517326 5_2:-3276770 None:intergenic
TGAAGAGTTCATGAGGTTCA+AGG 0.521920 5_2:+3276371 Msa0749770:CDS
TTTCTCAATGAGTCGTCTAA+CGG 0.522774 5_2:+3276063 Msa0749770:CDS
TAACATGGCTATGAAGTTGA+TGG 0.523547 5_2:-3278945 None:intergenic
TTATCTAATTCTTTGTAGTG+TGG 0.525418 5_2:+3275254 Msa0749770:five_prime_UTR
CCATGTCTTTACTTTGCTAG+AGG 0.529183 5_2:+3276243 Msa0749770:CDS
TGCTGCTGGTGGAACATCAC+CGG 0.530369 5_2:+3276434 Msa0749770:CDS
AGAGGAACTGGACTTAGTAA+TGG 0.530744 5_2:+3275814 Msa0749770:CDS
AAGAGGTGAAGGTGAAGAAG+GGG 0.530887 5_2:-3275734 None:intergenic
TGCAATATGTATTGCTTGGT+CGG 0.533943 5_2:-3279937 None:intergenic
CTGGTCGGGGCAGGCCCGAA+AGG 0.534386 5_2:+3276683 Msa0749770:CDS
AACATGGCTATGAAGTTGAT+GGG 0.534397 5_2:-3278944 None:intergenic
CTTCTCAATAAGATATCATG+TGG 0.536105 5_2:-3278775 None:intergenic
TTACTAAGTCCAGTTCCTCT+AGG 0.536989 5_2:-3275811 None:intergenic
AAAACCTACGGCTACTGGTA+AGG 0.538757 5_2:+3275403 Msa0749770:five_prime_UTR
ATGCTCATAATATTCATAAG+AGG 0.539122 5_2:+3276157 Msa0749770:CDS
GGCTGCGGCAGCATTTGCGA+TGG 0.539812 5_2:+3276639 Msa0749770:CDS
AAGGATGTTGCAAAGTCTGA+AGG 0.540390 5_2:+3279217 Msa0749770:CDS
TATTTCAACATTACTGGTCG+GGG 0.542341 5_2:+3276670 Msa0749770:CDS
ATTTCCAACTGAAAGAACAT+TGG 0.542751 5_2:+3277714 Msa0749770:CDS
GCATCACAACTTGCTGCTGG+TGG 0.543311 5_2:+3276423 Msa0749770:CDS
CATAGCCATGTTAACCATGC+AGG 0.544634 5_2:+3278955 Msa0749770:CDS
TTCTGGGGACAAGCCTAACT+CGG 0.544864 5_2:+3276726 Msa0749770:CDS
TGATTGATGATTGATGATGA+TGG 0.545525 5_2:-3279897 None:intergenic
AAATGCTTGAAAGAGAGTAA+AGG 0.549806 5_2:-3275462 None:intergenic
CACCAGCGCAGTCTCTCTGT+TGG 0.552012 5_2:+3278904 Msa0749770:CDS
AGCAATACATATTGCATACA+TGG 0.552154 5_2:+3279944 Msa0749770:three_prime_UTR
ACATTTCAGAGCCGTGGCTG+CGG 0.553398 5_2:+3276624 Msa0749770:intron
ATCTGCTTCGGGTGACAACA+TGG 0.554785 5_2:+3279493 Msa0749770:CDS
TTGTTGACTCTACAGAAATG+TGG 0.554888 5_2:+3279331 Msa0749770:intron
TGCTCAGCAGCATCAAAGAA+TGG 0.555393 5_2:+3276395 Msa0749770:CDS
AAGTCCTTGAACTCCAAGAA+AGG 0.556107 5_2:+3278830 Msa0749770:CDS
GAAGGCGTAGATCTCGGCAT+GGG 0.556601 5_2:+3279235 Msa0749770:CDS
AAGTCTGAAGGCGTAGATCT+CGG 0.557200 5_2:+3279229 Msa0749770:CDS
CACATGATATCTTATTGAGA+AGG 0.557830 5_2:+3278776 Msa0749770:CDS
CACTGCCACCAACAGCACCT+TGG 0.559329 5_2:-3275951 None:intergenic
AATATTTCAACATTACTGGT+CGG 0.562602 5_2:+3276668 Msa0749770:CDS
TACAAGAGGCAAGCAAGGGG+AGG 0.562749 5_2:+3279642 Msa0749770:three_prime_UTR
ATAACATAAAATGGGAAAGG+AGG 0.563680 5_2:-3280017 None:intergenic
AAAGACCTGCATGGTTAACA+TGG 0.565559 5_2:-3278960 None:intergenic
GGAATTCTCACATCTTGGAC+AGG 0.567021 5_2:-3278252 None:intergenic
GTTTCTTGCTATGGTTTCTG+GGG 0.567026 5_2:+3276711 Msa0749770:CDS
TATGTTACATTTCAGAGCCG+TGG 0.567197 5_2:+3276618 Msa0749770:intron
CAACAGAGAGACTGCGCTGG+TGG 0.569130 5_2:-3278903 None:intergenic
CCAATAGGGTTAAGAGGTGA+AGG 0.570288 5_2:-3275745 None:intergenic
GACTTTAGCAAGAACCACAT+TGG 0.572181 5_2:-3275557 None:intergenic
TACATATTGCATACATGGAT+AGG 0.572521 5_2:+3279949 Msa0749770:three_prime_UTR
TGAATAACATAAAATGGGAA+AGG 0.574733 5_2:-3280020 None:intergenic
CAAATATTCTCTTTAAAGCG+TGG 0.575174 5_2:-3276971 None:intergenic
GAGAATATCCAAGGTGCTGT+TGG 0.575381 5_2:+3275943 Msa0749770:CDS
TTAGACGACTCATTGAGAAA+AGG 0.576395 5_2:-3276060 None:intergenic
AAAATACAAGAGGCAAGCAA+GGG 0.581659 5_2:+3279638 Msa0749770:three_prime_UTR
CACTGTCTCCGGAAAGACAA+AGG 0.581924 5_2:-3278307 None:intergenic
TGTGAAACCCTACAAGGAGA+AGG 0.583303 5_2:+3278383 Msa0749770:CDS
TCCTTGAACTCCAAGAAAGG+AGG 0.583568 5_2:+3278833 Msa0749770:CDS
CCGCGTCTTGAAATGGGCGT+TGG 0.584382 5_2:+3276102 Msa0749770:CDS
ATGTCTTATGAGAATATCCA+AGG 0.586654 5_2:+3275934 Msa0749770:CDS
CTTTCCATTGCAGGCTACAG+TGG 0.586758 5_2:+3279079 Msa0749770:intron
CTTTCTCCTGATAACATCCA+AGG 0.587933 5_2:+3278979 Msa0749770:CDS
CAGAGAGACTGCGCTGGTGG+TGG 0.594991 5_2:-3278900 None:intergenic
GTTGGTGGCAGTGGTGCTGG+TGG 0.595287 5_2:+3275961 Msa0749770:CDS
ACAAGCCTAACTCGGCTTCG+CGG 0.597420 5_2:+3276734 Msa0749770:CDS
GCTGCGGCAGCATTTGCGAT+GGG 0.597928 5_2:+3276640 Msa0749770:CDS
AAGCAAAGAGACTGTCAGGA+AGG 0.599815 5_2:-3279361 None:intergenic
TCTTTAGAGTCAAACGCAGA+GGG 0.601397 5_2:-3278562 None:intergenic
TAGCAAGGTTATGAAGAACC+TGG 0.603647 5_2:-3275675 None:intergenic
GTGAGAGTCATATTATCGAA+AGG 0.603657 5_2:+3278327 Msa0749770:CDS
GGGTCTTTACCCTAATAGCA+AGG 0.608257 5_2:-3275690 None:intergenic
GGGTGAACCAACAACAGCAC+CGG 0.609002 5_2:-3276325 None:intergenic
TCAGCAGCAGCAATTTGAGA+GGG 0.609147 5_2:+3278516 Msa0749770:CDS
CCTCTAGCAAAGTAAAGACA+TGG 0.612058 5_2:-3276243 None:intergenic
GTGAAACCCTACAAGGAGAA+GGG 0.615151 5_2:+3278384 Msa0749770:CDS
CATTACCAGAAGGTGATGAA+GGG 0.615959 5_2:-3275855 None:intergenic
AGCAGCACAGTGATAATCAA+AGG 0.615972 5_2:+3276490 Msa0749770:CDS
TGTATGCAATATGTATTGCT+TGG 0.617673 5_2:-3279941 None:intergenic
CTCTCATTAGCCACTTCCGG+TGG 0.619392 5_2:-3279425 None:intergenic
AGCAAAGAGACTGTCAGGAA+GGG 0.620621 5_2:-3279360 None:intergenic
AATTGGATCTCTGGTAACAA+TGG 0.622958 5_2:+3276132 Msa0749770:CDS
AGATCTTGTGTGAAATTGCG+CGG 0.623399 5_2:+3280163 Msa0749770:three_prime_UTR
ATCAGCAGCAGCAATTTGAG+AGG 0.624147 5_2:+3278515 Msa0749770:CDS
TGTGCTTGTGAAACCCTACA+AGG 0.627297 5_2:+3278377 Msa0749770:CDS
TGTATAGCCACCAAAACCTA+CGG 0.627885 5_2:+3275391 Msa0749770:five_prime_UTR
TCCGGTGGAGAGAAATCAGA+CGG 0.628112 5_2:-3279410 None:intergenic
GTAGCAGCATCAATGCAAGA+TGG 0.631513 5_2:-3279169 None:intergenic
CACCAACAGAGAGACTGCGC+TGG 0.632218 5_2:-3278906 None:intergenic
CTAAAGAACCAGCAGAAGTG+AGG 0.639544 5_2:-3279105 None:intergenic
AACAACATGAAGAGTTCATG+AGG 0.641597 5_2:+3276364 Msa0749770:CDS
TTCTTTAGAGTCAAACGCAG+AGG 0.643087 5_2:-3278563 None:intergenic
AATATCCAAGGTGCTGTTGG+TGG 0.644306 5_2:+3275946 Msa0749770:CDS
TGAAGGCGTAGATCTCGGCA+TGG 0.644522 5_2:+3279234 Msa0749770:CDS
CTTATTGAGAAGGAAAATGG+AGG 0.653298 5_2:+3278786 Msa0749770:CDS
ACATGGCTATGAAGTTGATG+GGG 0.654909 5_2:-3278943 None:intergenic
TTCTTATGAAGCAACCAATG+TGG 0.670186 5_2:+3275543 Msa0749770:CDS
AAGGCGTAGATCTCGGCATG+GGG 0.671195 5_2:+3279236 Msa0749770:CDS
TCAGCAGCATCAAAGAATGG+TGG 0.671588 5_2:+3276398 Msa0749770:CDS
AAGGGGAGAATCCAAATACA+CGG 0.675208 5_2:+3277684 Msa0749770:intron
CGTGAGTCACATATGAAATG+GGG 0.678147 5_2:-3278354 None:intergenic
AAATACAAGAGGCAAGCAAG+GGG 0.680528 5_2:+3279639 Msa0749770:three_prime_UTR
AACGCAGAGGGACTTAAACA+TGG 0.682483 5_2:-3278550 None:intergenic
CCAACGCCCATTTCAAGACG+CGG 0.684511 5_2:-3276102 None:intergenic
CAGCAGCAGCAATTTGAGAG+GGG 0.685988 5_2:+3278517 Msa0749770:CDS
TATCAGGAGAAAGACCTGCA+TGG 0.700183 5_2:-3278969 None:intergenic
TGTGACCAAACATTACCAGA+AGG 0.700366 5_2:-3275865 None:intergenic
CATACCTTACCAGTAGCCGT+AGG 0.703434 5_2:-3275407 None:intergenic
GGTGTGCCCAGTGAAAATCG+TGG 0.781448 5_2:-3277004 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGTTTTAATATTATGTA+TGG + chr5_2:3276594-3276613 Msa0749770:intron 10.0%
!!! TATTTATGTATTTATTTCTT+AGG + chr5_2:3279575-3279594 Msa0749770:intron 10.0%
!! TTGTTAATGTTATTCTTATT+TGG + chr5_2:3277568-3277587 Msa0749770:intron 15.0%
!!! ATTACGATTTTATGAATAAT+AGG + chr5_2:3277891-3277910 Msa0749770:intron 15.0%
!! GATCGTATTTATATTTATAT+CGG + chr5_2:3279285-3279304 Msa0749770:intron 15.0%
!! TATGATGAATAACATAAAAT+GGG - chr5_2:3280028-3280047 None:intergenic 15.0%
!!! AAGATTTGATTTTTCACTAA+TGG + chr5_2:3275519-3275538 Msa0749770:exon 20.0%
!!! AGATTTGATTTTTCACTAAT+GGG + chr5_2:3275520-3275539 Msa0749770:exon 20.0%
!! ATATTCTCATAAGACATTAA+AGG - chr5_2:3275931-3275950 None:intergenic 20.0%
!!! AAAGGTATATTTCTTATAGA+TGG + chr5_2:3276508-3276527 Msa0749770:intron 20.0%
!! AAGGTATATTTCTTATAGAT+GGG + chr5_2:3276509-3276528 Msa0749770:intron 20.0%
!! TTAAATTGCATAATGATGAA+GGG - chr5_2:3277198-3277217 None:intergenic 20.0%
!!! AAATGAATATTGATTTGTCA+AGG + chr5_2:3277665-3277684 Msa0749770:intron 20.0%
!!! AATGAATATTGATTTGTCAA+GGG + chr5_2:3277666-3277685 Msa0749770:intron 20.0%
!!! AATTTTTTGTACCTATCATT+AGG + chr5_2:3278050-3278069 Msa0749770:intron 20.0%
!!! TTGTTATTTTGAAGCAAATT+TGG + chr5_2:3278228-3278247 Msa0749770:intron 20.0%
!! TGAATTGTAAAGAACTTAAA+CGG - chr5_2:3279522-3279541 None:intergenic 20.0%
!!! TTTAAGTTCTTTACAATTCA+AGG + chr5_2:3279522-3279541 Msa0749770:exon 20.0%
!! CTATGATGAATAACATAAAA+TGG - chr5_2:3280029-3280048 None:intergenic 20.0%
! TTATCTAATTCTTTGTAGTG+TGG + chr5_2:3275254-3275273 Msa0749770:five_prime_UTR 25.0%
!!! TGATTTTTGAAGCATTTTCA+GGG - chr5_2:3275594-3275613 None:intergenic 25.0%
!!! ATGATTTTTGAAGCATTTTC+AGG - chr5_2:3275595-3275614 None:intergenic 25.0%
! TGAAAATGCTTCAAAAATCA+TGG + chr5_2:3275594-3275613 Msa0749770:CDS 25.0%
! GAAAATGCTTCAAAAATCAT+GGG + chr5_2:3275595-3275614 Msa0749770:CDS 25.0%
!!! AGATTTTGAAAAAGGGTTAT+TGG - chr5_2:3275788-3275807 None:intergenic 25.0%
!!! TAGGAGAAGATTTTGAAAAA+GGG - chr5_2:3275795-3275814 None:intergenic 25.0%
! GATTAAACTTTGGACTAATA+GGG - chr5_2:3275909-3275928 None:intergenic 25.0%
! GACATTAAAGGATTAAACTT+TGG - chr5_2:3275919-3275938 None:intergenic 25.0%
! ATGCTCATAATATTCATAAG+AGG + chr5_2:3276157-3276176 Msa0749770:CDS 25.0%
! AAGTAAACAACAAACTAAAG+AGG - chr5_2:3276540-3276559 None:intergenic 25.0%
! GAAGAATATTTCAACATTAC+TGG + chr5_2:3276664-3276683 Msa0749770:CDS 25.0%
! AATATTTCAACATTACTGGT+CGG + chr5_2:3276668-3276687 Msa0749770:CDS 25.0%
! ATTCAAAGATGAAGATGTTT+CGG + chr5_2:3276789-3276808 Msa0749770:CDS 25.0%
! TATATCACCTTATCATAGAT+AGG + chr5_2:3276875-3276894 Msa0749770:intron 25.0%
! ATATTGCCATTAATTATTCC+AGG + chr5_2:3276946-3276965 Msa0749770:intron 25.0%
! AAAAGACACATTACTTAGTT+AGG - chr5_2:3277124-3277143 None:intergenic 25.0%
!! TTGAGTTTGCTTGATAATTA+AGG + chr5_2:3277160-3277179 Msa0749770:intron 25.0%
!! TGAGTTTGCTTGATAATTAA+GGG + chr5_2:3277161-3277180 Msa0749770:intron 25.0%
! CTTAAATTGCATAATGATGA+AGG - chr5_2:3277199-3277218 None:intergenic 25.0%
!! TGTAACGTTCTTTTTGTATT+AGG + chr5_2:3277287-3277306 Msa0749770:intron 25.0%
!!! ATGAATATTGATTTGTCAAG+GGG + chr5_2:3277667-3277686 Msa0749770:intron 25.0%
!! AAATAGATTTTCCGTGTATT+TGG - chr5_2:3277698-3277717 None:intergenic 25.0%
! TACTTCATTTGTAACTAACA+TGG - chr5_2:3277779-3277798 None:intergenic 25.0%
!! CGATTTTATGAATAATAGGA+TGG + chr5_2:3277895-3277914 Msa0749770:intron 25.0%
!! TTTAAAATGTTACCTTCTGA+GGG - chr5_2:3277955-3277974 None:intergenic 25.0%
! TATTCCCGAATTGATATTAT+TGG + chr5_2:3278463-3278482 Msa0749770:intron 25.0%
! ATTCCCGAATTGATATTATT+GGG + chr5_2:3278464-3278483 Msa0749770:intron 25.0%
! TAGTCCCAATAATATCAATT+CGG - chr5_2:3278471-3278490 None:intergenic 25.0%
! AGAGGAAAAAGGAAAATTTA+TGG - chr5_2:3278679-3278698 None:intergenic 25.0%
! TATCTTATTGAGAAGGAAAA+TGG + chr5_2:3278783-3278802 Msa0749770:CDS 25.0%
!!! CATCTAAGATTTTGAATTGT+AGG + chr5_2:3279610-3279629 Msa0749770:intron 25.0%
! GTAGGTAATAAAAATACAAG+AGG + chr5_2:3279628-3279647 Msa0749770:intron 25.0%
! AAGGATAAATGAGTGAAAAA+AGG - chr5_2:3279704-3279723 None:intergenic 25.0%
!!! ACATTTATTTTCACCTGTAA+AGG - chr5_2:3279723-3279742 None:intergenic 25.0%
! TGAATAACATAAAATGGGAA+AGG - chr5_2:3280023-3280042 None:intergenic 25.0%
!!! AATAATTTGTTGTCTCAGAT+TGG - chr5_2:3280064-3280083 None:intergenic 25.0%
! AGAAAATAGGTACATAATGA+TGG - chr5_2:3280113-3280132 None:intergenic 25.0%
! AGACAAAAGCAAAAGAAAAT+AGG - chr5_2:3280126-3280145 None:intergenic 25.0%
AATGCTTGAAAGAGAGTAAA+GGG - chr5_2:3275464-3275483 None:intergenic 30.0%
AAATGCTTGAAAGAGAGTAA+AGG - chr5_2:3275465-3275484 None:intergenic 30.0%
GAACAAGTTCATATTCTTCA+AGG - chr5_2:3275636-3275655 None:intergenic 30.0%
!! TTCTTCATAACCTTGCTATT+AGG + chr5_2:3275680-3275699 Msa0749770:CDS 30.0%
!! TCTTCATAACCTTGCTATTA+GGG + chr5_2:3275681-3275700 Msa0749770:CDS 30.0%
ATGAAGTGATTCTTCCAATA+GGG - chr5_2:3275762-3275781 None:intergenic 30.0%
!! CTAGGAGAAGATTTTGAAAA+AGG - chr5_2:3275796-3275815 None:intergenic 30.0%
! TTTTCAAAATCTTCTCCTAG+AGG + chr5_2:3275796-3275815 Msa0749770:CDS 30.0%
!!! GTAATGGTTTTGACTTCAAT+AGG + chr5_2:3275830-3275849 Msa0749770:CDS 30.0%
GGATTAAACTTTGGACTAAT+AGG - chr5_2:3275910-3275929 None:intergenic 30.0%
ATGTCTTATGAGAATATCCA+AGG + chr5_2:3275934-3275953 Msa0749770:CDS 30.0%
! TTTTCACCAAGGGTTAATAA+TGG + chr5_2:3275994-3276013 Msa0749770:CDS 30.0%
TAATCACCATTATTAACCCT+TGG - chr5_2:3276003-3276022 None:intergenic 30.0%
! TCCAATTGTAAGTTTGTTCA+TGG + chr5_2:3276282-3276301 Msa0749770:CDS 30.0%
ACCATGAACAAACTTACAAT+TGG - chr5_2:3276286-3276305 None:intergenic 30.0%
ATATTTCAACATTACTGGTC+GGG + chr5_2:3276669-3276688 Msa0749770:CDS 30.0%
CGAATAACCTATCTATGATA+AGG - chr5_2:3276885-3276904 None:intergenic 30.0%
!! CAAATATTCTCTTTAAAGCG+TGG - chr5_2:3276974-3276993 None:intergenic 30.0%
!! CGCTTTAAAGAGAATATTTG+CGG + chr5_2:3276974-3276993 Msa0749770:CDS 30.0%
! TAATTTTCCACGATTTTCAC+TGG + chr5_2:3276997-3277016 Msa0749770:CDS 30.0%
! AATTTTCCACGATTTTCACT+GGG + chr5_2:3276998-3277017 Msa0749770:CDS 30.0%
AAACTCAAATCAATCAAGGA+TGG - chr5_2:3277148-3277167 None:intergenic 30.0%
AAGCAAACTCAAATCAATCA+AGG - chr5_2:3277152-3277171 None:intergenic 30.0%
! GATAATTAAGGGTTTTCAAC+TGG + chr5_2:3277172-3277191 Msa0749770:intron 30.0%
AATTTAAGCTCAGTAATCAC+TGG + chr5_2:3277211-3277230 Msa0749770:intron 30.0%
AGAACGTTACACATAAAACA+CGG - chr5_2:3277278-3277297 None:intergenic 30.0%
GACTTCTAAACTATGTTAAC+AGG - chr5_2:3277634-3277653 None:intergenic 30.0%
ATTTCCAACTGAAAGAACAT+TGG + chr5_2:3277714-3277733 Msa0749770:CDS 30.0%
TGTGTTTATTTGTGAACCAT+AGG + chr5_2:3277921-3277940 Msa0749770:intron 30.0%
GTGTTTATTTGTGAACCATA+GGG + chr5_2:3277922-3277941 Msa0749770:intron 30.0%
!! CTTTAAAATGTTACCTTCTG+AGG - chr5_2:3277956-3277975 None:intergenic 30.0%
! CTCAGAAGGTAACATTTTAA+AGG + chr5_2:3277954-3277973 Msa0749770:intron 30.0%
ATAACTATTAAGCGTTCTTG+CGG + chr5_2:3277996-3278015 Msa0749770:intron 30.0%
TTGTTCATTTATGTGTCAGA+AGG - chr5_2:3278032-3278051 None:intergenic 30.0%
! TTTTGTACCTATCATTAGGT+AGG + chr5_2:3278054-3278073 Msa0749770:intron 30.0%
TTAGGTAGGTTCTTACTTAT+AGG + chr5_2:3278068-3278087 Msa0749770:intron 30.0%
TCTTATTGCATCTTTACAGA+AGG + chr5_2:3278181-3278200 Msa0749770:intron 30.0%
AGTCCCAATAATATCAATTC+GGG - chr5_2:3278470-3278489 None:intergenic 30.0%
CTTCTCAATAAGATATCATG+TGG - chr5_2:3278778-3278797 None:intergenic 30.0%
CACATGATATCTTATTGAGA+AGG + chr5_2:3278776-3278795 Msa0749770:CDS 30.0%
ATCGGATTATTCTTGAAATC+TGG - chr5_2:3278877-3278896 None:intergenic 30.0%
! TCTTTACAATTCAAGGTACT+TGG + chr5_2:3279529-3279548 Msa0749770:intron 30.0%
TTCACTCATTTATCCTTTAC+AGG + chr5_2:3279707-3279726 Msa0749770:intron 30.0%
!! TGATTGATGATTGATGATGA+TGG - chr5_2:3279900-3279919 None:intergenic 30.0%
TGTATGCAATATGTATTGCT+TGG - chr5_2:3279944-3279963 None:intergenic 30.0%
AGCAATACATATTGCATACA+TGG + chr5_2:3279944-3279963 Msa0749770:three_prime_UTR 30.0%
TACATATTGCATACATGGAT+AGG + chr5_2:3279949-3279968 Msa0749770:three_prime_UTR 30.0%
ATAACATAAAATGGGAAAGG+AGG - chr5_2:3280020-3280039 None:intergenic 30.0%
!! GAGTAAAGGGTATCAAGAAA+TGG - chr5_2:3275451-3275470 None:intergenic 35.0%
TTCTTATGAAGCAACCAATG+TGG + chr5_2:3275543-3275562 Msa0749770:CDS 35.0%
TATTAGGGTAAAGACCCATT+TGG + chr5_2:3275696-3275715 Msa0749770:CDS 35.0%
ATTAGGGTAAAGACCCATTT+GGG + chr5_2:3275697-3275716 Msa0749770:CDS 35.0%
AGATAGGTTCATACCCAAAT+GGG - chr5_2:3275713-3275732 None:intergenic 35.0%
TAGATAGGTTCATACCCAAA+TGG - chr5_2:3275714-3275733 None:intergenic 35.0%
ATTCTTCCAATAGGGTTAAG+AGG - chr5_2:3275754-3275773 None:intergenic 35.0%
GATGAAGTGATTCTTCCAAT+AGG - chr5_2:3275763-3275782 None:intergenic 35.0%
! ATAGGGTTCTTTGGAAAAGA+GGG - chr5_2:3275892-3275911 None:intergenic 35.0%
! AATAGGGTTCTTTGGAAAAG+AGG - chr5_2:3275893-3275912 None:intergenic 35.0%
TTTGGACTAATAGGGTTCTT+TGG - chr5_2:3275901-3275920 None:intergenic 35.0%
!!! TTCTTGTGCTTTTTCACCAA+GGG + chr5_2:3275984-3276003 Msa0749770:CDS 35.0%
TTAGACGACTCATTGAGAAA+AGG - chr5_2:3276063-3276082 None:intergenic 35.0%
TTTCTCAATGAGTCGTCTAA+CGG + chr5_2:3276063-3276082 Msa0749770:CDS 35.0%
AATTGGATCTCTGGTAACAA+TGG + chr5_2:3276132-3276151 Msa0749770:CDS 35.0%
!! TCTGCAAATGATGCTAGTTT+TGG + chr5_2:3276186-3276205 Msa0749770:CDS 35.0%
!!! AGTTTTGGTGTTGATGAAAG+TGG + chr5_2:3276201-3276220 Msa0749770:CDS 35.0%
CATGTCTTTACTTTGCTAGA+GGG + chr5_2:3276244-3276263 Msa0749770:CDS 35.0%
!! GCTAGAGGGTTTTGTAAAAA+TGG + chr5_2:3276258-3276277 Msa0749770:CDS 35.0%
GATTCGATTGATGCAAATTC+CGG + chr5_2:3276306-3276325 Msa0749770:CDS 35.0%
AACAACATGAAGAGTTCATG+AGG + chr5_2:3276364-3276383 Msa0749770:CDS 35.0%
TATTTCAACATTACTGGTCG+GGG + chr5_2:3276670-3276689 Msa0749770:CDS 35.0%
AGCAAGAAACTCATTCCTTT+CGG - chr5_2:3276701-3276720 None:intergenic 35.0%
AAGGAATGAGTTTCTTGCTA+TGG + chr5_2:3276702-3276721 Msa0749770:CDS 35.0%
! AGTTTCTTGCTATGGTTTCT+GGG + chr5_2:3276710-3276729 Msa0749770:CDS 35.0%
TTATTCGCGCATACATGAAA+TGG + chr5_2:3276898-3276917 Msa0749770:intron 35.0%
GTGGAACCTGGAATAATTAA+TGG - chr5_2:3276955-3276974 None:intergenic 35.0%
TCAAAAATCCATCTTCCCTA+GGG - chr5_2:3277077-3277096 None:intergenic 35.0%
ATCAAAAATCCATCTTCCCT+AGG - chr5_2:3277078-3277097 None:intergenic 35.0%
ACATTACTTAGTTAGGAGTC+AGG - chr5_2:3277117-3277136 None:intergenic 35.0%
! GGTTTATCCTGTACATTTTC+AGG + chr5_2:3277355-3277374 Msa0749770:intron 35.0%
AGTGATACCTGAAAATGTAC+AGG - chr5_2:3277365-3277384 None:intergenic 35.0%
ACAACCAATGTTCTTTCAGT+TGG - chr5_2:3277721-3277740 None:intergenic 35.0%
AAGTTCATGTACTACTAGCA+TGG - chr5_2:3277804-3277823 None:intergenic 35.0%
GTAAGAACCTACCTAATGAT+AGG - chr5_2:3278064-3278083 None:intergenic 35.0%
GTTATTGCAATCATGACATC+TGG + chr5_2:3278093-3278112 Msa0749770:intron 35.0%
! ACTTTTACAGACAGACACTA+CGG - chr5_2:3278161-3278180 None:intergenic 35.0%
GTGAGAGTCATATTATCGAA+AGG + chr5_2:3278327-3278346 Msa0749770:CDS 35.0%
ACGTGAGTCACATATGAAAT+GGG - chr5_2:3278358-3278377 None:intergenic 35.0%
AAGATGTCAACTTACTTGTC+AGG - chr5_2:3278417-3278436 None:intergenic 35.0%
TTGGGACTAATCATGTATAC+AGG + chr5_2:3278482-3278501 Msa0749770:intron 35.0%
TTACCAGGATGGAAATCAAA+AGG - chr5_2:3278589-3278608 None:intergenic 35.0%
GAGAAATTTGATTACCAGGA+TGG - chr5_2:3278600-3278619 None:intergenic 35.0%
AGGTGAGAAATTTGATTACC+AGG - chr5_2:3278604-3278623 None:intergenic 35.0%
GGTAATCAAATTTCTCACCT+TGG + chr5_2:3278604-3278623 Msa0749770:intron 35.0%
!! ATGGTTGCTTTAGAGGAAAA+AGG - chr5_2:3278690-3278709 None:intergenic 35.0%
TTCTTGTTCCTGCATGAAAT+AGG - chr5_2:3278744-3278763 None:intergenic 35.0%
CTTATTGAGAAGGAAAATGG+AGG + chr5_2:3278786-3278805 Msa0749770:CDS 35.0%
! AACATGGCTATGAAGTTGAT+GGG - chr5_2:3278947-3278966 None:intergenic 35.0%
TAACATGGCTATGAAGTTGA+TGG - chr5_2:3278948-3278967 None:intergenic 35.0%
AAATCTCCTTGGATGTTATC+AGG - chr5_2:3278988-3279007 None:intergenic 35.0%
! AACATCCAAGGAGATTTTAC+AGG + chr5_2:3278991-3279010 Msa0749770:CDS 35.0%
ACTAACCTGTAAAATCTCCT+TGG - chr5_2:3278999-3279018 None:intergenic 35.0%
AGAACTACACCATAGTATAC+AGG - chr5_2:3279022-3279041 None:intergenic 35.0%
GTAAGCTGTTAAAACCATGT+TGG - chr5_2:3279047-3279066 None:intergenic 35.0%
GTTAACATACTTTCCATTGC+AGG + chr5_2:3279070-3279089 Msa0749770:intron 35.0%
!! TTGTTGACTCTACAGAAATG+TGG + chr5_2:3279331-3279350 Msa0749770:intron 35.0%
AAAAATACAAGAGGCAAGCA+AGG + chr5_2:3279637-3279656 Msa0749770:three_prime_UTR 35.0%
AAAATACAAGAGGCAAGCAA+GGG + chr5_2:3279638-3279657 Msa0749770:three_prime_UTR 35.0%
GAGGGGGATCATATTAATTA+GGG + chr5_2:3279661-3279680 Msa0749770:three_prime_UTR 35.0%
!!! CTTAGTTTTGATGCTTCTCT+AGG - chr5_2:3279873-3279892 None:intergenic 35.0%
!! CTAGAGAAGCATCAAAACTA+AGG + chr5_2:3279871-3279890 Msa0749770:three_prime_UTR 35.0%
TGCAATATGTATTGCTTGGT+CGG - chr5_2:3279940-3279959 None:intergenic 35.0%
TGTATAGCCACCAAAACCTA+CGG + chr5_2:3275391-3275410 Msa0749770:five_prime_UTR 40.0%
GACTTTAGCAAGAACCACAT+TGG - chr5_2:3275560-3275579 None:intergenic 40.0%
TAGCAAGGTTATGAAGAACC+TGG - chr5_2:3275678-3275697 None:intergenic 40.0%
TAAGAGGTGAAGGTGAAGAA+GGG - chr5_2:3275738-3275757 None:intergenic 40.0%
TTAAGAGGTGAAGGTGAAGA+AGG - chr5_2:3275739-3275758 None:intergenic 40.0%
AAATCTTCTCCTAGAGGAAC+TGG + chr5_2:3275802-3275821 Msa0749770:CDS 40.0%
TTACTAAGTCCAGTTCCTCT+AGG - chr5_2:3275814-3275833 None:intergenic 40.0%
AGAGGAACTGGACTTAGTAA+TGG + chr5_2:3275814-3275833 Msa0749770:CDS 40.0%
CATTACCAGAAGGTGATGAA+GGG - chr5_2:3275858-3275877 None:intergenic 40.0%
ACATTACCAGAAGGTGATGA+AGG - chr5_2:3275859-3275878 None:intergenic 40.0%
! CATCACCTTCTGGTAATGTT+TGG + chr5_2:3275860-3275879 Msa0749770:CDS 40.0%
TGTGACCAAACATTACCAGA+AGG - chr5_2:3275868-3275887 None:intergenic 40.0%
!!! GTTCTTGTGCTTTTTCACCA+AGG + chr5_2:3275983-3276002 Msa0749770:CDS 40.0%
!! TGGTGTTGATGAAAGTGGAT+TGG + chr5_2:3276206-3276225 Msa0749770:CDS 40.0%
!! GGTGTTGATGAAAGTGGATT+GGG + chr5_2:3276207-3276226 Msa0749770:CDS 40.0%
!! GATGAAAGTGGATTGGGATT+TGG + chr5_2:3276213-3276232 Msa0749770:CDS 40.0%
CCTCTAGCAAAGTAAAGACA+TGG - chr5_2:3276246-3276265 None:intergenic 40.0%
CCATGTCTTTACTTTGCTAG+AGG + chr5_2:3276243-3276262 Msa0749770:CDS 40.0%
TGTTCCAATCCCTCAAACTT+GGG - chr5_2:3276348-3276367 None:intergenic 40.0%
TTGTTCCAATCCCTCAAACT+TGG - chr5_2:3276349-3276368 None:intergenic 40.0%
TGAAGAGTTCATGAGGTTCA+AGG + chr5_2:3276371-3276390 Msa0749770:CDS 40.0%
ATGTACTTGTCGTACGATAC+CGG - chr5_2:3276456-3276475 None:intergenic 40.0%
AGCAGCACAGTGATAATCAA+AGG + chr5_2:3276490-3276509 Msa0749770:CDS 40.0%
TATGTTACATTTCAGAGCCG+TGG + chr5_2:3276618-3276637 Msa0749770:intron 40.0%
GCAAGAAACTCATTCCTTTC+GGG - chr5_2:3276700-3276719 None:intergenic 40.0%
! GAGTTTCTTGCTATGGTTTC+TGG + chr5_2:3276709-3276728 Msa0749770:CDS 40.0%
! GTTTCTTGCTATGGTTTCTG+GGG + chr5_2:3276711-3276730 Msa0749770:CDS 40.0%
TCTTTGAATGTGCTTTCAGC+AGG - chr5_2:3276778-3276797 None:intergenic 40.0%
! AAGATGTTTCGGAGTACTTC+AGG + chr5_2:3276800-3276819 Msa0749770:CDS 40.0%
CATGATATATGTCTCCCATG+AGG + chr5_2:3277327-3277346 Msa0749770:intron 40.0%
AGAATCGTGGACATTTAAGC+AGG - chr5_2:3277599-3277618 None:intergenic 40.0%
AAGGGGAGAATCCAAATACA+CGG + chr5_2:3277684-3277703 Msa0749770:intron 40.0%
!! TGTTTGTTGTCGTTACCCTA+CGG + chr5_2:3277850-3277869 Msa0749770:intron 40.0%
TTTGTGAACCATAGGGTTTG+TGG + chr5_2:3277929-3277948 Msa0749770:intron 40.0%
GGTAAGGAATTCTCACATCT+TGG - chr5_2:3278260-3278279 None:intergenic 40.0%
GTTTGTCACCTTTGTCTTTC+CGG + chr5_2:3278299-3278318 Msa0749770:CDS 40.0%
AATATGACTCTCACTGTCTC+CGG - chr5_2:3278321-3278340 None:intergenic 40.0%
CGTGAGTCACATATGAAATG+GGG - chr5_2:3278357-3278376 None:intergenic 40.0%
CACGTGAGTCACATATGAAA+TGG - chr5_2:3278359-3278378 None:intergenic 40.0%
! ACTTTTCCCTTCTCCTTGTA+GGG - chr5_2:3278393-3278412 None:intergenic 40.0%
! AACTTTTCCCTTCTCCTTGT+AGG - chr5_2:3278394-3278413 None:intergenic 40.0%
!! TCTTTAGAGTCAAACGCAGA+GGG - chr5_2:3278565-3278584 None:intergenic 40.0%
!! TTCTTTAGAGTCAAACGCAG+AGG - chr5_2:3278566-3278585 None:intergenic 40.0%
!!! GAACCTTTTGATTTCCATCC+TGG + chr5_2:3278583-3278602 Msa0749770:CDS 40.0%
CGAGTAGAATAAAGAAGCCA+AGG - chr5_2:3278624-3278643 None:intergenic 40.0%
TCACCAAACCTATTTCATGC+AGG + chr5_2:3278733-3278752 Msa0749770:intron 40.0%
GTTCCTGCATGAAATAGGTT+TGG - chr5_2:3278739-3278758 None:intergenic 40.0%
AAGTCCTTGAACTCCAAGAA+AGG + chr5_2:3278830-3278849 Msa0749770:CDS 40.0%
!! AGTTGATGGGGAAAAACCAA+AGG - chr5_2:3278934-3278953 None:intergenic 40.0%
!! ACATGGCTATGAAGTTGATG+GGG - chr5_2:3278946-3278965 None:intergenic 40.0%
AAAGACCTGCATGGTTAACA+TGG - chr5_2:3278963-3278982 None:intergenic 40.0%
CTTTCTCCTGATAACATCCA+AGG + chr5_2:3278979-3278998 Msa0749770:CDS 40.0%
! CAGGTTAGTCCTGTATACTA+TGG + chr5_2:3279010-3279029 Msa0749770:intron 40.0%
!! TGGTGTAGTTCTAACCAACA+TGG + chr5_2:3279030-3279049 Msa0749770:intron 40.0%
TGCTGAGAGTGGGAATTTAA+AGG + chr5_2:3279198-3279217 Msa0749770:CDS 40.0%
AAGGATGTTGCAAAGTCTGA+AGG + chr5_2:3279217-3279236 Msa0749770:CDS 40.0%
!!! TAATCTCCAGCTGCTTTTGT+TGG - chr5_2:3279389-3279408 None:intergenic 40.0%
TGAATCGACAACATCTGCTT+CGG + chr5_2:3279481-3279500 Msa0749770:CDS 40.0%
AAATACAAGAGGCAAGCAAG+GGG + chr5_2:3279639-3279658 Msa0749770:three_prime_UTR 40.0%
GGAGGGGGATCATATTAATT+AGG + chr5_2:3279660-3279679 Msa0749770:three_prime_UTR 40.0%
!! ATGCTTCTCTAGGATGATCT+AGG - chr5_2:3279863-3279882 None:intergenic 40.0%
AGATCTTGTGTGAAATTGCG+CGG + chr5_2:3280163-3280182 Msa0749770:three_prime_UTR 40.0%
CTCTCTGACGCTTCAAAGAT+AGG + chr5_2:3275292-3275311 Msa0749770:five_prime_UTR 45.0%
! TTACCAGTAGCCGTAGGTTT+TGG - chr5_2:3275404-3275423 None:intergenic 45.0%
AAAACCTACGGCTACTGGTA+AGG + chr5_2:3275403-3275422 Msa0749770:five_prime_UTR 45.0%
TTTAGCATGTTGTCCTGACC+AGG + chr5_2:3275657-3275676 Msa0749770:CDS 45.0%
AGGTTATGAAGAACCTGGTC+AGG - chr5_2:3275673-3275692 None:intergenic 45.0%
GGGTCTTTACCCTAATAGCA+AGG - chr5_2:3275693-3275712 None:intergenic 45.0%
AAGGTGAAGAAGGGGTAGAT+AGG - chr5_2:3275729-3275748 None:intergenic 45.0%
AAGAGGTGAAGGTGAAGAAG+GGG - chr5_2:3275737-3275756 None:intergenic 45.0%
CCAATAGGGTTAAGAGGTGA+AGG - chr5_2:3275748-3275767 None:intergenic 45.0%
CCTTCACCTCTTAACCCTAT+TGG + chr5_2:3275745-3275764 Msa0749770:CDS 45.0%
!! GAGAATATCCAAGGTGCTGT+TGG + chr5_2:3275943-3275962 Msa0749770:CDS 45.0%
!! AATATCCAAGGTGCTGTTGG+TGG + chr5_2:3275946-3275965 Msa0749770:CDS 45.0%
GTTGATCCGCGTCTTGAAAT+GGG + chr5_2:3276096-3276115 Msa0749770:CDS 45.0%
!! TGTTGGTTCACCCAAGTTTG+AGG + chr5_2:3276335-3276354 Msa0749770:CDS 45.0%
! GTTGGTTCACCCAAGTTTGA+GGG + chr5_2:3276336-3276355 Msa0749770:CDS 45.0%
TTCACCCAAGTTTGAGGGAT+TGG + chr5_2:3276341-3276360 Msa0749770:CDS 45.0%
TGCTCAGCAGCATCAAAGAA+TGG + chr5_2:3276395-3276414 Msa0749770:CDS 45.0%
TCAGCAGCATCAAAGAATGG+TGG + chr5_2:3276398-3276417 Msa0749770:CDS 45.0%
GAATGTGCTTTCAGCAGGAA+AGG - chr5_2:3276773-3276792 None:intergenic 45.0%
!! TCTCTTTAAAGCGTGGAACC+TGG - chr5_2:3276967-3276986 None:intergenic 45.0%
CACAGGCAAAACCACTTTCA+TGG - chr5_2:3277028-3277047 None:intergenic 45.0%
!! TTCCAAGAAGCATCAGACCA+GGG - chr5_2:3277053-3277072 None:intergenic 45.0%
GGATAAACCTGTCTCCTCAT+GGG - chr5_2:3277344-3277363 None:intergenic 45.0%
AGGATAAACCTGTCTCCTCA+TGG - chr5_2:3277345-3277364 None:intergenic 45.0%
GCAATACTATGACTGCCGTA+GGG - chr5_2:3277868-3277887 None:intergenic 45.0%
AGCAATACTATGACTGCCGT+AGG - chr5_2:3277869-3277888 None:intergenic 45.0%
GGAATTCTCACATCTTGGAC+AGG - chr5_2:3278255-3278274 None:intergenic 45.0%
! AACATGCGCTTTTGCTGGTA+AGG - chr5_2:3278276-3278295 None:intergenic 45.0%
! TACCAGCAAAAGCGCATGTT+TGG + chr5_2:3278276-3278295 Msa0749770:CDS 45.0%
! ACCAGCAAAAGCGCATGTTT+GGG + chr5_2:3278277-3278296 Msa0749770:CDS 45.0%
TGTGCTTGTGAAACCCTACA+AGG + chr5_2:3278377-3278396 Msa0749770:CDS 45.0%
TGTGAAACCCTACAAGGAGA+AGG + chr5_2:3278383-3278402 Msa0749770:CDS 45.0%
GTGAAACCCTACAAGGAGAA+GGG + chr5_2:3278384-3278403 Msa0749770:CDS 45.0%
CAAATTGCTGCTGCTGATGT+TGG - chr5_2:3278513-3278532 None:intergenic 45.0%
ATCAGCAGCAGCAATTTGAG+AGG + chr5_2:3278515-3278534 Msa0749770:CDS 45.0%
TCAGCAGCAGCAATTTGAGA+GGG + chr5_2:3278516-3278535 Msa0749770:CDS 45.0%
AACGCAGAGGGACTTAAACA+TGG - chr5_2:3278553-3278572 None:intergenic 45.0%
AAAACTGAAGCAGCACGAGA+TGG - chr5_2:3278709-3278728 None:intergenic 45.0%
TCCTTGAACTCCAAGAAAGG+AGG + chr5_2:3278833-3278852 Msa0749770:CDS 45.0%
CATAGCCATGTTAACCATGC+AGG + chr5_2:3278955-3278974 Msa0749770:CDS 45.0%
TATCAGGAGAAAGACCTGCA+TGG - chr5_2:3278972-3278991 None:intergenic 45.0%
CTAAAGAACCAGCAGAAGTG+AGG - chr5_2:3279108-3279127 None:intergenic 45.0%
!! CTCACTTCTGCTGGTTCTTT+AGG + chr5_2:3279106-3279125 Msa0749770:CDS 45.0%
GTAGCAGCATCAATGCAAGA+TGG - chr5_2:3279172-3279191 None:intergenic 45.0%
! AAGTCTGAAGGCGTAGATCT+CGG + chr5_2:3279229-3279248 Msa0749770:CDS 45.0%
AGCAAAGAGACTGTCAGGAA+GGG - chr5_2:3279363-3279382 None:intergenic 45.0%
AAGCAAAGAGACTGTCAGGA+AGG - chr5_2:3279364-3279383 None:intergenic 45.0%
GTACTCTCATTAGCCACTTC+CGG - chr5_2:3279431-3279450 None:intergenic 45.0%
GAATCGACAACATCTGCTTC+GGG + chr5_2:3279482-3279501 Msa0749770:CDS 45.0%
TTGTGTGAAATTGCGCGGAT+AGG + chr5_2:3280168-3280187 Msa0749770:three_prime_UTR 45.0%
CATACCTTACCAGTAGCCGT+AGG - chr5_2:3275410-3275429 None:intergenic 50.0%
AGGAACCCTTCATCACCTTC+TGG + chr5_2:3275850-3275869 Msa0749770:CDS 50.0%
GTCGTCTAACGGCGATGATT+TGG + chr5_2:3276074-3276093 Msa0749770:CDS 50.0%
GGTTGATCCGCGTCTTGAAA+TGG + chr5_2:3276095-3276114 Msa0749770:CDS 50.0%
GGTGGTCAGAATTGGATCTC+TGG + chr5_2:3276123-3276142 Msa0749770:CDS 50.0%
!! GCAAATTCCGGTGCTGTTGT+TGG + chr5_2:3276318-3276337 Msa0749770:CDS 50.0%
! TTCTGGGGACAAGCCTAACT+CGG + chr5_2:3276726-3276745 Msa0749770:CDS 50.0%
!! ACGACTTGCTAATGCTGTGC+AGG + chr5_2:3276838-3276857 Msa0749770:intron 50.0%
!! CTTCCAAGAAGCATCAGACC+AGG - chr5_2:3277054-3277073 None:intergenic 50.0%
TGATGCTTCTTGGAAGCCCT+AGG + chr5_2:3277058-3277077 Msa0749770:intron 50.0%
GATGCTTCTTGGAAGCCCTA+GGG + chr5_2:3277059-3277078 Msa0749770:intron 50.0%
GGAGTCAGGATCAACATCAG+AGG - chr5_2:3277103-3277122 None:intergenic 50.0%
TATGTCTCCCATGAGGAGAC+AGG + chr5_2:3277334-3277353 Msa0749770:intron 50.0%
! ACCCAAACATGCGCTTTTGC+TGG - chr5_2:3278281-3278300 None:intergenic 50.0%
CACTGTCTCCGGAAAGACAA+AGG - chr5_2:3278310-3278329 None:intergenic 50.0%
CAGCAGCAGCAATTTGAGAG+GGG + chr5_2:3278517-3278536 Msa0749770:CDS 50.0%
! GCACGAGATGGTTGCTTTAG+AGG - chr5_2:3278697-3278716 None:intergenic 50.0%
GAGAAGGAAAATGGAGGAGC+AGG + chr5_2:3278792-3278811 Msa0749770:CDS 50.0%
GCCTCCTTTCTTGGAGTTCA+AGG - chr5_2:3278837-3278856 None:intergenic 50.0%
GACTCTTCAGCCTCCTTTCT+TGG - chr5_2:3278846-3278865 None:intergenic 50.0%
! TCTCTCTGTTGGTGCTCCTT+TGG + chr5_2:3278915-3278934 Msa0749770:CDS 50.0%
CTTTCCATTGCAGGCTACAG+TGG + chr5_2:3279079-3279098 Msa0749770:intron 50.0%
GGTGAAGCAAAGAGACTGTC+AGG - chr5_2:3279368-3279387 None:intergenic 50.0%
GCTTCACCAACAAAAGCAGC+TGG + chr5_2:3279380-3279399 Msa0749770:CDS 50.0%
TCCGTCTGATTTCTCTCCAC+CGG + chr5_2:3279409-3279428 Msa0749770:CDS 50.0%
TCCGGTGGAGAGAAATCAGA+CGG - chr5_2:3279413-3279432 None:intergenic 50.0%
TGATTTCTCTCCACCGGAAG+TGG + chr5_2:3279415-3279434 Msa0749770:CDS 50.0%
ATCTGCTTCGGGTGACAACA+TGG + chr5_2:3279493-3279512 Msa0749770:CDS 50.0%
!! CCAGTAGCCGTAGGTTTTGG+TGG - chr5_2:3275401-3275420 None:intergenic 55.0%
CCACCAAAACCTACGGCTAC+TGG + chr5_2:3275398-3275417 Msa0749770:five_prime_UTR 55.0%
CCAACGCCCATTTCAAGACG+CGG - chr5_2:3276105-3276124 None:intergenic 55.0%
!! CGTCTTGAAATGGGCGTTGG+TGG + chr5_2:3276105-3276124 Msa0749770:CDS 55.0%
!! TGGGCGTTGGTGGTCAGAAT+TGG + chr5_2:3276115-3276134 Msa0749770:CDS 55.0%
GGGTGAACCAACAACAGCAC+CGG - chr5_2:3276328-3276347 None:intergenic 55.0%
!! GCTGCATCACAACTTGCTGC+TGG + chr5_2:3276420-3276439 Msa0749770:CDS 55.0%
!! GCATCACAACTTGCTGCTGG+TGG + chr5_2:3276423-3276442 Msa0749770:CDS 55.0%
TGCTGCTGGTGGAACATCAC+CGG + chr5_2:3276434-3276453 Msa0749770:CDS 55.0%
ACATTTCAGAGCCGTGGCTG+CGG + chr5_2:3276624-3276643 Msa0749770:intron 55.0%
TCAACATTACTGGTCGGGGC+AGG + chr5_2:3276674-3276693 Msa0749770:CDS 55.0%
ACAAGCCTAACTCGGCTTCG+CGG + chr5_2:3276734-3276753 Msa0749770:CDS 55.0%
GGTGTGCCCAGTGAAAATCG+TGG - chr5_2:3277007-3277026 None:intergenic 55.0%
CACTGGGCACACCATGAAAG+TGG + chr5_2:3277014-3277033 Msa0749770:CDS 55.0%
CTCCCTGGTCTGATGCTTCT+TGG + chr5_2:3277048-3277067 Msa0749770:intron 55.0%
CTTGGAAGCCCTAGGGAAGA+TGG + chr5_2:3277066-3277085 Msa0749770:intron 55.0%
GATGTGCACGTGCAGAATCG+TGG - chr5_2:3277612-3277631 None:intergenic 55.0%
TCTGAGGGCCACAAACCCTA+TGG - chr5_2:3277940-3277959 None:intergenic 55.0%
TAGGGTTTGTGGCCCTCAGA+AGG + chr5_2:3277940-3277959 Msa0749770:intron 55.0%
CTACTGCTGCTGCTGAGAGT+GGG + chr5_2:3279188-3279207 Msa0749770:CDS 55.0%
! TGAAGGCGTAGATCTCGGCA+TGG + chr5_2:3279234-3279253 Msa0749770:CDS 55.0%
! GAAGGCGTAGATCTCGGCAT+GGG + chr5_2:3279235-3279254 Msa0749770:CDS 55.0%
AAGGCGTAGATCTCGGCATG+GGG + chr5_2:3279236-3279255 Msa0749770:CDS 55.0%
CTCTCATTAGCCACTTCCGG+TGG - chr5_2:3279428-3279447 None:intergenic 55.0%
TACAAGAGGCAAGCAAGGGG+AGG + chr5_2:3279642-3279661 Msa0749770:three_prime_UTR 55.0%
ACAAGAGGCAAGCAAGGGGA+GGG + chr5_2:3279643-3279662 Msa0749770:three_prime_UTR 55.0%
CACTGCCACCAACAGCACCT+TGG - chr5_2:3275954-3275973 None:intergenic 60.0%
!! CAAGGTGCTGTTGGTGGCAG+TGG + chr5_2:3275952-3275971 Msa0749770:CDS 60.0%
CCGCGTCTTGAAATGGGCGT+TGG + chr5_2:3276102-3276121 Msa0749770:CDS 60.0%
GCTGCGGCAGCATTTGCGAT+GGG + chr5_2:3276640-3276659 Msa0749770:CDS 60.0%
ATCTGCCGCGAAGCCGAGTT+AGG - chr5_2:3276742-3276761 None:intergenic 60.0%
!! GTGGTTTTGCCTGTGCTCCC+TGG + chr5_2:3277033-3277052 Msa0749770:CDS 60.0%
! AGCATCAGACCAGGGAGCAC+AGG - chr5_2:3277045-3277064 None:intergenic 60.0%
!! CTGCGCTGGTGGTGGTGAAT+CGG - chr5_2:3278895-3278914 None:intergenic 60.0%
CAACAGAGAGACTGCGCTGG+TGG - chr5_2:3278906-3278925 None:intergenic 60.0%
CACCAGCGCAGTCTCTCTGT+TGG + chr5_2:3278904-3278923 Msa0749770:CDS 60.0%
CACCAACAGAGAGACTGCGC+TGG - chr5_2:3278909-3278928 None:intergenic 60.0%
GCTGCCACTGTAGCCTGCAA+TGG - chr5_2:3279086-3279105 None:intergenic 60.0%
AGTGGCAGCCTCACTTCTGC+TGG + chr5_2:3279097-3279116 Msa0749770:CDS 60.0%
! AGGTGCTGCATCTGAGCAGC+AGG + chr5_2:3279126-3279145 Msa0749770:CDS 60.0%
GCTACTGCTGCTGCTGAGAG+TGG + chr5_2:3279187-3279206 Msa0749770:CDS 60.0%
CAAGAGGCAAGCAAGGGGAG+GGG + chr5_2:3279644-3279663 Msa0749770:three_prime_UTR 60.0%
AAGAGGCAAGCAAGGGGAGG+GGG + chr5_2:3279645-3279664 Msa0749770:three_prime_UTR 60.0%
!! GCTGTTGGTGGCAGTGGTGC+TGG + chr5_2:3275958-3275977 Msa0749770:CDS 65.0%
!! GTTGGTGGCAGTGGTGCTGG+TGG + chr5_2:3275961-3275980 Msa0749770:CDS 65.0%
CGCAAATGCTGCCGCAGCCA+CGG - chr5_2:3276638-3276657 None:intergenic 65.0%
GGCTGCGGCAGCATTTGCGA+TGG + chr5_2:3276639-3276658 Msa0749770:CDS 65.0%
! CAGAGAGACTGCGCTGGTGG+TGG - chr5_2:3278903-3278922 None:intergenic 65.0%
CTGGTCGGGGCAGGCCCGAA+AGG + chr5_2:3276683-3276702 Msa0749770:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 3275201 3280192 3275201 ID=Msa0749770;Name=Msa0749770
chr5_2 mRNA 3275201 3280192 3275201 ID=Msa0749770-mRNA-1;Parent=Msa0749770;Name=Msa0749770-mRNA-1;_AED=0.14;_eAED=0.14;_QI=337|0.8|0.81|1|0.8|0.72|11|466|742
chr5_2 exon 3275201 3276511 3275201 ID=Msa0749770-mRNA-1:exon:1096;Parent=Msa0749770-mRNA-1
chr5_2 exon 3276633 3276821 3276633 ID=Msa0749770-mRNA-1:exon:1097;Parent=Msa0749770-mRNA-1
chr5_2 exon 3276968 3277054 3276968 ID=Msa0749770-mRNA-1:exon:1098;Parent=Msa0749770-mRNA-1
chr5_2 exon 3277687 3277779 3277687 ID=Msa0749770-mRNA-1:exon:1099;Parent=Msa0749770-mRNA-1
chr5_2 exon 3278242 3278421 3278242 ID=Msa0749770-mRNA-1:exon:1100;Parent=Msa0749770-mRNA-1
chr5_2 exon 3278504 3278604 3278504 ID=Msa0749770-mRNA-1:exon:1101;Parent=Msa0749770-mRNA-1
chr5_2 exon 3278755 3279012 3278755 ID=Msa0749770-mRNA-1:exon:1102;Parent=Msa0749770-mRNA-1
chr5_2 exon 3279092 3279257 3279092 ID=Msa0749770-mRNA-1:exon:1103;Parent=Msa0749770-mRNA-1
chr5_2 exon 3279346 3279543 3279346 ID=Msa0749770-mRNA-1:exon:1104;Parent=Msa0749770-mRNA-1
chr5_2 exon 3279632 3279682 3279632 ID=Msa0749770-mRNA-1:exon:1105;Parent=Msa0749770-mRNA-1
chr5_2 exon 3279795 3280192 3279795 ID=Msa0749770-mRNA-1:exon:1106;Parent=Msa0749770-mRNA-1
chr5_2 five_prime_UTR 3275201 3275537 3275201 ID=Msa0749770-mRNA-1:five_prime_utr;Parent=Msa0749770-mRNA-1
chr5_2 CDS 3275538 3276511 3275538 ID=Msa0749770-mRNA-1:cds;Parent=Msa0749770-mRNA-1
chr5_2 CDS 3276633 3276821 3276633 ID=Msa0749770-mRNA-1:cds;Parent=Msa0749770-mRNA-1
chr5_2 CDS 3276968 3277054 3276968 ID=Msa0749770-mRNA-1:cds;Parent=Msa0749770-mRNA-1
chr5_2 CDS 3277687 3277779 3277687 ID=Msa0749770-mRNA-1:cds;Parent=Msa0749770-mRNA-1
chr5_2 CDS 3278242 3278421 3278242 ID=Msa0749770-mRNA-1:cds;Parent=Msa0749770-mRNA-1
chr5_2 CDS 3278504 3278604 3278504 ID=Msa0749770-mRNA-1:cds;Parent=Msa0749770-mRNA-1
chr5_2 CDS 3278755 3279012 3278755 ID=Msa0749770-mRNA-1:cds;Parent=Msa0749770-mRNA-1
chr5_2 CDS 3279092 3279257 3279092 ID=Msa0749770-mRNA-1:cds;Parent=Msa0749770-mRNA-1
chr5_2 CDS 3279346 3279526 3279346 ID=Msa0749770-mRNA-1:cds;Parent=Msa0749770-mRNA-1
chr5_2 three_prime_UTR 3279527 3279543 3279527 ID=Msa0749770-mRNA-1:three_prime_utr;Parent=Msa0749770-mRNA-1
chr5_2 three_prime_UTR 3279632 3279682 3279632 ID=Msa0749770-mRNA-1:three_prime_utr;Parent=Msa0749770-mRNA-1
chr5_2 three_prime_UTR 3279795 3280192 3279795 ID=Msa0749770-mRNA-1:three_prime_utr;Parent=Msa0749770-mRNA-1
Gene Sequence

>Msa0749770

ATGGGTTCTTATGAAGCAACCAATGTGGTTCTTGCTAAAGTCAAAAACTTTGACCCTGAAAATGCTTCAAAAATCATGGGTTTTCTTCTCATGAACCTTGAAGAATATGAACTTGTTCGTTTAGCATGTTGTCCTGACCAGGTTCTTCATAACCTTGCTATTAGGGTAAAGACCCATTTGGGTATGAACCTATCTACCCCTTCTTCACCTTCACCTCTTAACCCTATTGGAAGAATCACTTCATCTTCCAATAACCCTTTTTCAAAATCTTCTCCTAGAGGAACTGGACTTAGTAATGGTTTTGACTTCAATAGGAACCCTTCATCACCTTCTGGTAATGTTTGGTCACAACCCTCTTTTCCAAAGAACCCTATTAGTCCAAAGTTTAATCCTTTAATGTCTTATGAGAATATCCAAGGTGCTGTTGGTGGCAGTGGTGCTGGTGGTTCTTGTGCTTTTTCACCAAGGGTTAATAATGGTGATTATGATTTTGTTGATGAACAACAGCTGAATGAGTGTTTTCCTTTTCTCAATGAGTCGTCTAACGGCGATGATTTGGTTGATCCGCGTCTTGAAATGGGCGTTGGTGGTCAGAATTGGATCTCTGGTAACAATGGCGATGCTCATAATATTCATAAGAGGAGTTTTTCTGCAAATGATGCTAGTTTTGGTGTTGATGAAAGTGGATTGGGATTTGGTTTTAAGCCATGTCTTTACTTTGCTAGAGGGTTTTGTAAAAATGGTTCCAATTGTAAGTTTGTTCATGGTGATTCGATTGATGCAAATTCCGGTGCTGTTGTTGGTTCACCCAAGTTTGAGGGATTGGAACAACATGAAGAGTTCATGAGGTTCAAGGCTGCTCAGCAGCATCAAAGAATGGTGGCTGCATCACAACTTGCTGCTGGTGGAACATCACCGGTATCGTACGACAAGTACATTGATCTTCTGATGCAGCAGCACAGTGATAATCAAAGAGCCGTGGCTGCGGCAGCATTTGCGATGGGTGAAGAATATTTCAACATTACTGGTCGGGGCAGGCCCGAAAGGAATGAGTTTCTTGCTATGGTTTCTGGGGACAAGCCTAACTCGGCTTCGCGGCAGATTTACTTGACCTTTCCTGCTGAAAGCACATTCAAAGATGAAGATGTTTCGGAGTACTTCAGGTTCCACGCTTTAAAGAGAATATTTGCGGTAATTTTCCACGATTTTCACTGGGCACACCATGAAAGTGGTTTTGCCTGTGCTCCCTGGGGAGAATCCAAATACACGGAAAATCTATTTCCAACTGAAAGAACATTGGTTGTTGTAGTTCATGTTAAGAAATTCTACGTGAAGTATTCCATCAAATTTGGACCTGTCCAAGATGTGAGAATTCCTTACCAGCAAAAGCGCATGTTTGGGTTTGTCACCTTTGTCTTTCCGGAGACAGTGAGAGTCATATTATCGAAAGGAAATCCCCATTTCATATGTGACTCACGTGTGCTTGTGAAACCCTACAAGGAGAAGGGAAAAGTTCCTGACAAGAGACACCAACATCAGCAGCAGCAATTTGAGAGGGGAGATTTTTCGCCATGTTTAAGTCCCTCTGCGTTTGACTCTAAAGAACCTTTTGATTTCCATCCTGGAACAAGAATGCTATACAATCCACATGATATCTTATTGAGAAGGAAAATGGAGGAGCAGGCTGCTGACTTTCAGCAAGTCCTTGAACTCCAAGAAAGGAGGCTGAAGAGTCTGCAGCTTCCAGATTTCAAGAATAATCCGATTCACCACCACCAGCGCAGTCTCTCTGTTGGTGCTCCTTTGGTTTTTCCCCATCAACTTCATAGCCATGTTAACCATGCAGGTCTTTCTCCTGATAACATCCAAGGAGATTTTACAGGCTACAGTGGCAGCCTCACTTCTGCTGGTTCTTTAGGTGCTGCATCTGAGCAGCAGGCGCTACACAAAGAAGCTGATCCATCTTGCATTGATGCTGCTACTGCTGCTGCTGAGAGTGGGAATTTAAAGGATGTTGCAAAGTCTGAAGGCGTAGATCTCGGCATGGGAAATGTGGAGCACACCCTTCCTGACAGTCTCTTTGCTTCACCAACAAAAGCAGCTGGAGATTATCCGTCTGATTTCTCTCCACCGGAAGTGGCTAATGAGAGTACTGCATTTTCGACTAGCTTGTCTCAGAAGTTTGAATCGACAACATCTGCTTCGGGTGACAACATGGCTTCCGTTTAA
Protein sequence

>Msa0749770

MGSYEATNVVLAKVKNFDPENASKIMGFLLMNLEEYELVRLACCPDQVLHNLAIRVKTHLGMNLSTPSSPSPLNPIGRITSSSNNPFSKSSPRGTGLSNGFDFNRNPSSPSGNVWSQPSFPKNPISPKFNPLMSYENIQGAVGGSGAGGSCAFSPRVNNGDYDFVDEQQLNECFPFLNESSNGDDLVDPRLEMGVGGQNWISGNNGDAHNIHKRSFSANDASFGVDESGLGFGFKPCLYFARGFCKNGSNCKFVHGDSIDANSGAVVGSPKFEGLEQHEEFMRFKAAQQHQRMVAASQLAAGGTSPVSYDKYIDLLMQQHSDNQRAVAAAAFAMGEEYFNITGRGRPERNEFLAMVSGDKPNSASRQIYLTFPAESTFKDEDVSEYFRFHALKRIFAVIFHDFHWAHHESGFACAPWGESKYTENLFPTERTLVVVVHVKKFYVKYSIKFGPVQDVRIPYQQKRMFGFVTFVFPETVRVILSKGNPHFICDSRVLVKPYKEKGKVPDKRHQHQQQQFERGDFSPCLSPSAFDSKEPFDFHPGTRMLYNPHDILLRRKMEEQAADFQQVLELQERRLKSLQLPDFKNNPIHHHQRSLSVGAPLVFPHQLHSHVNHAGLSPDNIQGDFTGYSGSLTSAGSLGAASEQQALHKEADPSCIDAATAAAESGNLKDVAKSEGVDLGMGNVEHTLPDSLFASPTKAAGDYPSDFSPPEVANESTAFSTSLSQKFESTTSASGDNMASV*