AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1101240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1101240 MtrunA17_Chr7g0253011 97.389 383 8 2 1 381 1 383 0.0 774
Msa1101240 MtrunA17_Chr6g0461661 58.025 405 112 15 2 381 4 375 2.62e-139 401
Msa1101240 MtrunA17_Chr4g0060931 46.565 393 164 14 1 381 1 359 2.59e-98 296
Msa1101240 MtrunA17_Chr3g0091921 64.815 216 67 6 1 215 1 208 4.11e-90 273
Msa1101240 MtrunA17_Chr6g0453451 62.439 205 66 3 12 216 15 208 4.16e-86 264
Msa1101240 MtrunA17_Chr2g0316971 73.077 156 40 1 17 172 23 176 4.27e-81 253
Msa1101240 MtrunA17_Chr6g0484441 67.066 167 47 3 16 182 4 162 1.38e-75 237
Msa1101240 MtrunA17_Chr7g0217721 41.624 394 169 15 3 381 5 352 1.90e-73 232
Msa1101240 MtrunA17_Chr1g0147421 65.116 172 52 4 17 186 27 192 1.69e-72 230
Msa1101240 MtrunA17_Chr3g0139331 50.000 236 95 7 10 233 6 230 1.40e-69 222
Msa1101240 MtrunA17_Chr2g0312321 52.336 214 82 7 17 226 11 208 1.07e-65 211
Msa1101240 MtrunA17_Chr7g0217711 64.189 148 48 3 9 155 11 154 5.98e-62 197
Msa1101240 MtrunA17_Chr3g0144271 67.669 133 40 2 17 148 23 153 1.45e-60 201
Msa1101240 MtrunA17_Chr8g0359921 55.294 170 70 2 15 182 12 177 2.95e-57 189
Msa1101240 MtrunA17_Chr7g0252971 52.874 174 66 4 10 172 2 170 2.97e-57 190
Msa1101240 MtrunA17_Chr8g0372121 53.988 163 64 4 17 176 6 160 4.85e-57 189
Msa1101240 MtrunA17_Chr2g0318081 48.792 207 86 4 15 209 14 212 8.51e-57 189
Msa1101240 MtrunA17_Chr4g0017921 60.127 158 51 4 17 171 8 156 1.21e-55 186
Msa1101240 MtrunA17_Chr1g0183741 54.375 160 65 3 12 171 5 156 1.43e-55 184
Msa1101240 MtrunA17_Chr5g0405211 54.375 160 62 4 17 173 8 159 3.27e-55 185
Msa1101240 MtrunA17_Chr7g0261411 43.494 269 110 10 17 281 10 240 6.14e-55 182
Msa1101240 MtrunA17_Chr4g0056541 55.758 165 61 4 17 177 7 163 8.13e-55 184
Msa1101240 MtrunA17_Chr4g0018391 53.797 158 62 3 17 171 7 156 8.99e-55 184
Msa1101240 MtrunA17_Chr2g0309331 53.750 160 64 3 15 171 8 160 2.50e-54 182
Msa1101240 MtrunA17_Chr5g0417791 51.829 164 73 2 15 176 1 160 4.62e-54 179
Msa1101240 MtrunA17_Chr5g0398971 37.455 275 137 8 17 288 7 249 3.33e-53 180
Msa1101240 MtrunA17_Chr3g0124761 52.439 164 72 2 15 177 5 163 4.33e-53 177
Msa1101240 MtrunA17_Chr2g0318101 49.714 175 77 4 13 178 11 183 8.11e-53 179
Msa1101240 MtrunA17_Chr8g0346001 49.444 180 77 4 17 186 15 190 1.80e-52 180
Msa1101240 MtrunA17_Chr1g0200561 50.303 165 71 4 17 178 19 175 4.65e-52 177
Msa1101240 MtrunA17_Chr4g0042561 52.532 158 69 2 16 171 8 161 5.49e-52 174
Msa1101240 MtrunA17_Chr7g0263931 51.497 167 77 3 7 171 1 165 7.68e-52 176
Msa1101240 MtrunA17_Chr6g0481091 47.778 180 83 4 15 189 4 177 8.36e-52 172
Msa1101240 MtrunA17_Chr8g0384721 51.205 166 74 2 14 177 4 164 8.75e-52 174
Msa1101240 MtrunA17_Chr2g0309891 51.534 163 72 3 15 175 4 161 9.16e-52 176
Msa1101240 MtrunA17_Chr3g0109821 45.283 212 105 6 15 223 4 207 6.19e-51 181
Msa1101240 MtrunA17_Chr5g0433781 51.534 163 71 4 15 175 4 160 1.18e-50 179
Msa1101240 MtrunA17_Chr4g0047841 47.826 184 73 4 17 179 15 196 2.08e-50 172
Msa1101240 MtrunA17_Chr2g0326361 49.704 169 81 3 10 176 7 173 4.68e-50 171
Msa1101240 MtrunA17_Chr3g0130731 50.000 164 76 2 15 177 5 163 2.00e-49 168
Msa1101240 MtrunA17_Chr8g0361731 41.284 218 100 5 1 211 1 197 4.97e-49 170
Msa1101240 MtrunA17_Chr6g0453131 48.256 172 77 3 16 179 14 181 6.42e-49 169
Msa1101240 MtrunA17_Chr5g0417001 46.154 182 86 3 8 181 5 182 2.41e-48 168
Msa1101240 MtrunA17_Chr3g0113001 52.941 170 69 6 66 229 14 178 6.37e-47 162
Msa1101240 MtrunA17_Chr3g0130101 50.641 156 67 4 19 171 9 157 9.18e-47 163
Msa1101240 MtrunA17_Chr7g0214071 50.955 157 68 4 15 171 13 160 3.67e-46 158
Msa1101240 MtrunA17_Chr5g0400461 51.351 148 59 3 17 151 6 153 3.02e-45 158
Msa1101240 MtrunA17_Chr2g0311651 44.920 187 90 4 1 177 9 192 8.97e-45 156
Msa1101240 MtrunA17_Chr5g0442771 46.328 177 85 4 8 177 11 184 1.45e-44 156
Msa1101240 MtrunA17_Chr1g0197351 49.383 162 72 3 17 172 42 199 5.97e-44 158
Msa1101240 MtrunA17_Chr2g0311661 46.243 173 82 4 16 177 19 191 9.56e-44 153
Msa1101240 MtrunA17_Chr3g0128151 50.920 163 62 4 17 172 22 173 2.11e-43 159
Msa1101240 MtrunA17_Chr4g0054791 45.238 168 87 3 17 182 6 170 2.44e-43 153
Msa1101240 MtrunA17_Chr1g0201021 47.771 157 72 4 19 172 21 170 8.51e-43 157
Msa1101240 MtrunA17_Chr5g0428991 49.383 162 64 4 17 171 25 175 1.30e-42 157
Msa1101240 MtrunA17_Chr8g0364791 47.799 159 71 4 17 171 6 156 5.65e-42 152
Msa1101240 MtrunA17_Chr4g0076731 47.059 153 74 3 19 171 56 201 1.80e-41 150
Msa1101240 MtrunA17_Chr8g0384201 45.912 159 74 4 17 171 6 156 4.12e-40 148
Msa1101240 MtrunA17_Chr3g0128111 49.045 157 68 4 20 172 45 193 8.14e-40 141
Msa1101240 MtrunA17_Chr1g0197361 48.125 160 67 6 19 172 10 159 3.80e-39 147
Msa1101240 MtrunA17_Chr3g0092671 48.428 159 68 5 19 172 7 156 9.53e-39 145
Msa1101240 MtrunA17_Chr4g0038751 49.219 128 64 1 19 146 17 143 6.80e-38 138
Msa1101240 MtrunA17_Chr3g0131911 41.573 178 94 4 17 190 14 185 2.77e-37 135
Msa1101240 MtrunA17_Chr8g0385991 42.581 155 82 3 17 168 14 164 2.09e-36 132
Msa1101240 MtrunA17_Chr3g0113031 39.453 256 121 12 80 318 3 241 2.54e-36 133
Msa1101240 MtrunA17_Chr8g0345671 50.000 132 60 4 16 144 10 138 2.03e-35 134
Msa1101240 MtrunA17_Chr8g0345691 47.407 135 64 5 14 144 8 139 8.31e-32 124
Msa1101240 MtrunA17_Chr8g0345711 45.038 131 66 4 17 144 12 139 3.48e-30 114
Msa1101240 MtrunA17_Chr2g0321741 41.060 151 72 5 29 176 2 138 6.44e-30 118
Msa1101240 MtrunA17_Chr2g0321631 36.025 161 93 4 16 169 3 160 5.46e-28 110
Msa1101240 MtrunA17_Chr4g0026141 41.045 134 71 3 17 145 5 135 7.88e-28 110
Msa1101240 MtrunA17_Chr8g0345731 42.857 133 69 5 17 144 24 154 1.46e-25 101
Msa1101240 MtrunA17_Chr8g0345701 38.122 181 78 8 17 180 7 170 2.72e-25 100
Msa1101240 MtrunA17_Chr4g0050701 32.716 162 95 3 17 174 11 162 7.39e-25 100
Msa1101240 MtrunA17_Chr7g0266701 34.337 166 97 5 16 172 3 165 2.40e-24 100
Msa1101240 MtrunA17_Chr8g0345741 40.678 118 64 4 30 144 4 118 5.33e-23 94.4
Msa1101240 MtrunA17_Chr8g0345721 32.778 180 78 6 5 144 15 191 1.71e-22 94.4
Msa1101240 MtrunA17_Chr8g0384351 35.185 162 79 5 10 171 3 138 2.77e-21 90.5
Msa1101240 MtrunA17_Chr7g0243371 53.247 77 34 1 70 146 17 91 3.65e-21 87.8
Msa1101240 MtrunA17_Chr7g0251661 35.606 132 77 5 15 144 8 133 1.37e-20 87.8
Msa1101240 MtrunA17_Chr3g0130321 31.193 218 127 8 14 221 4 208 3.29e-17 79.7
Msa1101240 MtrunA17_Chr7g0251671 31.387 137 86 4 16 150 9 139 5.46e-17 77.8
Msa1101240 MtrunA17_Chr3g0113011 51.613 62 30 0 2 63 4 65 2.75e-16 73.2
Msa1101240 MtrunA17_Chr7g0251651 33.333 138 84 5 15 150 16 147 7.95e-15 72.4
Msa1101240 MtrunA17_Chr3g0113041 52.727 55 26 0 9 63 11 65 3.23e-14 67.4
Msa1101240 MtrunA17_Chr2g0282871 32.222 180 91 9 10 171 46 212 4.31e-14 72.4
Msa1101240 MtrunA17_Chr4g0040541 33.862 189 85 9 9 171 34 208 6.34e-14 71.6
Msa1101240 MtrunA17_Chr2g0324961 32.995 197 95 9 17 194 49 227 1.53e-12 67.4
Msa1101240 MtrunA17_Chr8g0389661 30.851 188 94 8 8 171 38 213 2.97e-12 67.8
Msa1101240 MtrunA17_Chr8g0367761 34.014 147 74 6 17 146 68 208 5.05e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1101240 AT5G18270.1 70.233 215 55 4 1 209 5 216 5.94e-107 318
Msa1101240 AT5G18270.2 70.233 215 55 4 1 209 5 216 1.00e-106 317
Msa1101240 AT5G61430.1 48.248 371 148 8 11 381 10 336 3.75e-103 308
Msa1101240 AT3G04060.1 62.205 254 81 6 2 243 4 254 1.03e-102 307
Msa1101240 AT5G07680.1 46.194 381 153 9 1 381 1 329 4.72e-99 297
Msa1101240 AT5G07680.2 46.594 367 144 9 15 381 1 315 9.88e-97 291
Msa1101240 AT5G39610.1 64.623 212 64 4 5 216 8 208 5.52e-87 265
Msa1101240 AT3G29035.1 66.341 205 47 4 5 208 11 194 1.73e-86 265
Msa1101240 AT5G53950.1 68.485 165 50 1 17 181 17 179 2.18e-78 246
Msa1101240 AT3G18400.1 70.370 162 41 3 16 177 4 158 4.47e-76 238
Msa1101240 AT5G61430.2 45.570 316 128 8 66 381 2 273 8.37e-75 233
Msa1101240 AT3G15170.1 65.269 167 55 2 11 177 15 178 1.60e-74 234
Msa1101240 AT1G56010.2 43.750 288 105 8 17 298 19 255 2.19e-69 221
Msa1101240 AT3G12977.1 50.000 224 87 6 8 226 7 210 1.27e-68 218
Msa1101240 AT1G76420.1 63.125 160 54 2 17 176 22 176 1.29e-68 219
Msa1101240 AT2G24430.2 62.733 161 55 2 17 177 16 171 1.38e-67 216
Msa1101240 AT2G24430.1 62.733 161 55 2 17 177 16 171 1.38e-67 216
Msa1101240 AT4G10350.1 53.261 184 75 4 10 190 2 177 1.51e-56 189
Msa1101240 AT4G27410.2 47.573 206 89 4 15 209 12 209 2.37e-56 187
Msa1101240 AT4G36160.1 54.601 163 63 4 12 171 5 159 6.26e-56 188
Msa1101240 AT4G36160.3 54.601 163 63 4 12 171 5 159 6.26e-56 188
Msa1101240 AT4G36160.2 54.601 163 63 4 12 171 9 163 7.22e-56 188
Msa1101240 AT3G04070.2 51.190 168 76 2 11 172 4 171 1.30e-55 186
Msa1101240 AT1G33280.1 58.228 158 54 4 17 171 8 156 1.29e-54 182
Msa1101240 AT2G18060.3 51.829 164 68 4 13 173 5 160 3.98e-54 183
Msa1101240 AT2G18060.1 51.829 164 68 4 13 173 5 160 3.98e-54 183
Msa1101240 AT1G12260.2 53.797 158 62 3 17 171 7 156 1.83e-53 181
Msa1101240 AT1G12260.1 53.797 158 62 3 17 171 7 156 2.54e-53 182
Msa1101240 AT5G66300.1 42.857 210 106 5 11 215 6 206 6.20e-53 177
Msa1101240 AT3G04070.1 47.283 184 75 3 11 172 4 187 1.15e-52 179
Msa1101240 AT3G15500.1 53.374 163 70 2 15 177 12 168 1.28e-52 177
Msa1101240 AT5G62380.2 55.696 158 59 4 17 171 7 156 1.80e-52 178
Msa1101240 AT5G62380.1 55.696 158 59 4 17 171 7 156 1.80e-52 178
Msa1101240 AT1G62700.1 42.424 231 101 8 17 244 7 208 2.70e-52 179
Msa1101240 AT1G62700.2 42.424 231 101 8 17 244 7 208 2.70e-52 179
Msa1101240 AT1G61110.1 48.913 184 72 5 17 186 16 191 3.39e-52 177
Msa1101240 AT1G71930.2 49.091 165 73 3 17 178 9 165 3.56e-52 177
Msa1101240 AT1G71930.1 49.091 165 73 3 17 178 9 165 3.56e-52 177
Msa1101240 AT4G27410.3 43.946 223 89 5 15 209 12 226 6.74e-52 176
Msa1101240 AT1G52890.1 51.176 170 77 2 15 184 12 175 8.83e-52 175
Msa1101240 AT3G17730.1 51.875 160 69 3 15 172 4 157 9.64e-52 173
Msa1101240 AT4G28530.1 51.149 174 61 4 17 174 10 175 1.45e-51 176
Msa1101240 AT1G01720.1 51.553 161 71 2 13 171 3 158 1.57e-51 174
Msa1101240 AT3G61910.1 48.889 180 73 5 17 182 11 185 3.05e-51 174
Msa1101240 AT5G08790.1 51.205 166 73 3 15 177 5 165 6.76e-51 172
Msa1101240 AT1G77450.1 50.610 164 75 2 15 177 8 166 6.94e-51 171
Msa1101240 AT2G46770.1 49.112 169 68 4 17 171 16 180 1.49e-50 174
Msa1101240 AT1G69490.1 53.503 157 67 3 17 171 9 161 2.77e-50 170
Msa1101240 AT3G03200.1 50.888 169 72 4 15 179 4 165 9.61e-50 174
Msa1101240 AT1G56010.1 42.857 238 80 8 66 298 2 188 1.04e-49 168
Msa1101240 AT5G63790.1 49.398 166 76 2 15 177 48 208 1.45e-49 169
Msa1101240 AT1G79580.3 51.875 160 66 4 15 171 15 166 1.47e-49 171
Msa1101240 AT1G79580.5 51.875 160 66 4 15 171 15 166 1.47e-49 171
Msa1101240 AT1G79580.4 51.875 160 66 4 15 171 15 166 1.47e-49 171
Msa1101240 AT1G79580.2 51.875 160 66 4 15 171 15 166 1.47e-49 171
Msa1101240 AT1G79580.1 51.875 160 66 4 15 171 15 166 1.47e-49 171
Msa1101240 AT5G63790.2 49.398 166 76 2 15 177 58 218 1.57e-49 170
Msa1101240 AT1G54330.1 50.909 165 70 3 15 177 4 159 2.84e-49 168
Msa1101240 AT1G32770.1 48.795 166 70 3 17 171 16 177 5.68e-49 169
Msa1101240 AT5G17260.1 49.701 167 77 3 15 179 4 165 1.74e-48 171
Msa1101240 AT1G33060.1 48.276 174 82 3 17 188 24 191 2.79e-48 173
Msa1101240 AT1G65910.1 49.091 165 76 3 15 177 4 162 2.80e-48 173
Msa1101240 AT1G33060.2 48.276 174 82 3 17 188 24 191 3.07e-48 173
Msa1101240 AT3G10490.1 53.165 158 67 3 17 172 27 179 6.87e-48 163
Msa1101240 AT3G10500.1 50.303 165 74 3 10 172 2 160 7.35e-48 171
Msa1101240 AT5G04410.1 50.602 166 72 4 10 172 2 160 9.14e-48 171
Msa1101240 AT3G10480.1 55.063 158 64 4 17 172 27 179 1.07e-47 168
Msa1101240 AT2G43000.1 47.531 162 80 2 19 180 20 176 1.50e-47 163
Msa1101240 AT1G26870.1 33.533 334 153 11 8 333 6 278 3.12e-47 166
Msa1101240 AT5G46590.1 50.000 158 73 3 17 172 6 159 3.73e-47 162
Msa1101240 AT5G39820.1 44.560 193 83 4 2 175 8 195 4.83e-47 164
Msa1101240 AT5G46590.2 43.158 190 99 4 17 201 6 191 4.88e-47 162
Msa1101240 AT3G12977.2 50.909 165 58 5 62 223 10 154 5.61e-47 160
Msa1101240 AT4G35580.1 51.875 160 69 3 17 174 9 162 5.88e-47 167
Msa1101240 AT4G35580.2 51.875 160 69 3 17 174 9 162 6.76e-47 168
Msa1101240 AT4G35580.3 51.875 160 69 3 17 174 9 162 7.08e-47 167
Msa1101240 AT3G10480.2 55.063 158 63 4 17 172 27 178 2.17e-46 164
Msa1101240 AT3G10490.2 53.165 158 67 3 17 172 27 179 2.22e-46 165
Msa1101240 AT5G13180.1 51.266 158 69 4 14 171 11 160 5.15e-46 158
Msa1101240 AT3G15510.1 48.193 166 65 4 21 172 21 179 1.31e-45 160
Msa1101240 AT2G33480.2 50.000 168 66 5 6 171 7 158 3.70e-45 156
Msa1101240 AT2G33480.1 50.000 166 71 4 6 171 7 160 4.73e-45 156
Msa1101240 AT4G17980.1 53.788 132 57 2 17 146 6 135 1.66e-44 155
Msa1101240 AT4G17980.2 53.788 132 57 2 17 146 6 135 2.40e-44 155
Msa1101240 AT1G52880.1 50.000 158 73 2 21 172 21 178 3.02e-44 155
Msa1101240 AT5G64060.1 45.000 160 78 4 16 172 5 157 2.72e-43 154
Msa1101240 AT2G02450.1 45.181 166 84 2 19 184 53 211 7.81e-43 154
Msa1101240 AT2G02450.2 45.181 166 84 2 19 184 53 211 1.18e-42 154
Msa1101240 AT3G49530.2 42.623 183 91 3 17 188 13 192 1.69e-42 153
Msa1101240 AT3G10480.3 45.550 191 64 4 17 172 27 212 3.51e-42 155
Msa1101240 AT2G27300.1 45.963 161 72 5 17 176 14 160 7.42e-42 150
Msa1101240 AT3G49530.1 44.324 185 85 5 17 188 13 192 1.18e-41 152
Msa1101240 AT5G09330.5 45.570 158 78 3 17 172 6 157 1.64e-41 152
Msa1101240 AT5G09330.2 45.570 158 78 3 17 172 6 157 1.64e-41 152
Msa1101240 AT5G09330.4 45.570 158 78 3 17 172 6 157 1.64e-41 152
Msa1101240 AT5G09330.3 45.570 158 78 3 17 172 6 157 1.64e-41 152
Msa1101240 AT5G09330.1 45.570 158 78 3 17 172 6 157 1.64e-41 152
Msa1101240 AT1G32510.1 34.191 272 150 8 17 270 6 266 5.93e-41 146
Msa1101240 AT1G34180.3 50.382 131 59 2 19 147 18 144 1.47e-40 149
Msa1101240 AT5G24590.2 47.531 162 68 4 17 171 13 164 1.69e-40 149
Msa1101240 AT2G17040.1 44.304 158 80 3 19 176 8 157 1.70e-40 144
Msa1101240 AT1G34190.1 48.855 131 61 2 19 147 18 144 4.34e-40 149
Msa1101240 AT1G34180.1 50.382 131 59 2 19 147 18 144 6.80e-40 149
Msa1101240 AT3G12910.1 42.541 181 90 5 9 177 13 191 3.34e-39 142
Msa1101240 AT1G34180.4 46.154 143 59 2 19 147 18 156 8.63e-39 144
Msa1101240 AT1G34180.2 46.154 143 59 2 19 147 18 156 3.73e-38 144
Msa1101240 AT1G32870.2 48.101 158 74 3 17 172 10 161 7.23e-38 143
Msa1101240 AT1G32870.1 48.101 158 74 3 17 172 10 161 7.31e-38 143
Msa1101240 AT1G32870.3 48.101 158 74 3 17 172 46 197 1.68e-37 142
Msa1101240 AT5G22290.1 46.565 131 65 2 19 148 23 149 7.09e-37 137
Msa1101240 AT3G44290.2 46.565 131 65 2 19 148 16 142 8.71e-36 130
Msa1101240 AT4G10350.2 53.788 132 50 4 62 190 7 130 1.92e-35 132
Msa1101240 AT3G44290.1 46.565 131 65 2 19 148 16 142 2.44e-35 132
Msa1101240 AT5G04395.1 45.455 143 64 2 17 146 28 169 3.53e-34 125
Msa1101240 AT4G28530.2 45.802 131 51 3 17 130 10 137 2.25e-30 119
Msa1101240 AT4G01550.1 38.889 162 88 5 20 178 7 160 3.35e-26 109
Msa1101240 AT2G33480.3 51.961 102 43 2 70 171 8 103 1.43e-25 103
Msa1101240 AT5G64530.1 32.020 203 107 6 15 202 1 187 4.10e-23 95.9
Msa1101240 AT4G01520.1 38.125 160 85 7 18 172 5 155 4.64e-23 98.6
Msa1101240 AT1G02230.1 42.069 145 71 6 18 158 4 139 5.55e-23 99.4
Msa1101240 AT1G02250.1 39.310 145 75 5 18 158 4 139 5.82e-23 99.4
Msa1101240 AT5G64530.2 38.636 132 67 3 15 146 1 118 5.92e-23 94.4
Msa1101240 AT4G01540.4 39.490 157 81 7 20 171 7 154 7.84e-23 99.4
Msa1101240 AT4G01540.3 39.241 158 82 7 20 172 7 155 8.10e-23 99.8
Msa1101240 AT3G44350.2 32.099 162 101 4 16 172 4 161 1.06e-22 96.3
Msa1101240 AT4G01540.2 39.490 157 81 7 20 171 7 154 1.12e-22 99.4
Msa1101240 AT4G01540.1 39.490 157 81 7 20 171 7 154 1.15e-22 99.8
Msa1101240 AT3G04420.2 40.458 131 70 3 18 144 4 130 3.15e-22 95.9
Msa1101240 AT3G04420.1 40.458 131 70 3 18 144 4 130 1.31e-21 95.1
Msa1101240 AT3G10490.4 57.831 83 30 2 90 172 2 79 1.45e-21 95.1
Msa1101240 AT3G10490.3 57.831 83 30 2 90 172 2 79 1.45e-21 95.1
Msa1101240 AT2G43000.2 44.118 102 52 2 79 180 2 98 3.48e-21 90.9
Msa1101240 AT5G22380.1 34.615 156 93 4 20 169 8 160 3.49e-21 91.7
Msa1101240 AT3G44350.1 32.877 146 90 3 16 156 4 146 6.12e-21 89.0
Msa1101240 AT2G18060.2 55.844 77 26 3 95 171 2 70 1.18e-20 91.3
Msa1101240 AT5G50820.1 33.929 168 91 6 13 172 13 168 3.82e-20 87.8
Msa1101240 AT5G14000.1 34.783 184 103 6 1 182 3 171 1.12e-19 87.0
Msa1101240 AT5G14000.2 36.478 159 88 5 1 157 3 150 1.59e-19 85.1
Msa1101240 AT1G01010.1 31.707 164 95 5 20 175 6 160 7.40e-19 88.2
Msa1101240 AT1G02220.1 37.313 134 73 4 15 144 1 127 1.88e-17 83.6
Msa1101240 AT5G22290.2 52.830 53 21 1 96 148 2 50 3.53e-13 69.3
Msa1101240 AT3G56530.1 31.343 134 85 4 17 147 52 181 5.16e-13 69.7
Msa1101240 AT4G29230.2 31.401 207 104 10 9 190 39 232 1.77e-12 68.9
Msa1101240 AT5G56620.3 27.027 296 145 14 15 256 41 319 2.02e-12 68.6
Msa1101240 AT4G29230.1 31.841 201 99 10 15 190 46 233 2.10e-12 68.9
Msa1101240 AT5G56620.2 26.936 297 146 14 15 257 41 320 2.22e-12 68.6
Msa1101240 AT4G29230.3 31.841 201 99 10 15 190 46 233 3.37e-12 68.2
Msa1101240 AT4G28500.1 32.571 175 86 8 17 172 59 220 4.02e-12 67.0
Msa1101240 AT5G56620.1 26.936 297 146 14 15 257 41 320 4.81e-12 67.4
Msa1101240 AT3G04430.1 33.108 148 78 6 23 158 6 144 1.82e-11 63.2

Find 83 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATGCCAACAAGTGTTTA+TGG 0.158620 7_3:+31900694 Msa1101240:CDS
AGTAGTTCAAGTTTGGATTT+TGG 0.186129 7_3:-31900645 None:intergenic
CAAAAGGAGAAAAGACTAAT+TGG 0.210520 7_3:+31899819 Msa1101240:CDS
TTTATATTATAAACATTATT+AGG 0.222080 7_3:+31901066 Msa1101240:three_prime_UTR
CAAACAAAACATATATAATT+TGG 0.253352 7_3:-31901008 None:intergenic
ACTACTTTATGTATCAAAAT+AGG 0.259873 7_3:+31900662 Msa1101240:CDS
TCTTCATACCAACAAGGTTC+TGG 0.292340 7_3:-31899766 None:intergenic
TACATAAAGTAGTTCAAGTT+TGG 0.294780 7_3:-31900652 None:intergenic
GATGATCATAGTTGATTCTA+TGG 0.301071 7_3:-31900522 None:intergenic
ATTCTATGGTAATTATCTTC+TGG 0.313346 7_3:-31900508 None:intergenic
AGTTGCACCTCTCTCAGATT+TGG 0.314330 7_3:+31900867 Msa1101240:CDS
AACTAGACATGGAAAGGAAT+AGG 0.341443 7_3:+31900812 Msa1101240:CDS
GAGCAACTGAATCTGGTTAC+TGG 0.349949 7_3:+31899696 Msa1101240:CDS
AAGACTCTTGTGTTCTATAA+AGG 0.353552 7_3:+31899788 Msa1101240:CDS
TAAACATTATTAGGCATCAT+AGG 0.360664 7_3:+31901075 Msa1101240:three_prime_UTR
TCACCTTTGTTAACAACAAT+TGG 0.361305 7_3:-31899277 None:intergenic
TTGATGTTGATTATTGTTGA+TGG 0.362599 7_3:-31900473 None:intergenic
AGGCATCATAGGAAAGTTCT+TGG 0.364360 7_3:+31901086 Msa1101240:three_prime_UTR
GTTGAACCATAAACACTTGT+TGG 0.369330 7_3:-31900700 None:intergenic
ACAAATAGAGCAACTGAATC+TGG 0.384360 7_3:+31899689 Msa1101240:CDS
AAATTCAGTGCAACTGCTAT+TGG 0.394008 7_3:+31899394 Msa1101240:CDS
CTATTTGTTCTCATACCTGT+TGG 0.394100 7_3:-31899674 None:intergenic
TGAGACCTGTATCTTGTGAT+TGG 0.394390 7_3:-31900762 None:intergenic
TTGTTATTGTGTAGGATGAA+TGG 0.403338 7_3:+31900230 Msa1101240:intron
CAAACTCTTGATCTTCCTCC+AGG 0.417105 7_3:+31899304 Msa1101240:CDS
TGTTATTGTGTAGGATGAAT+GGG 0.421686 7_3:+31900231 Msa1101240:intron
TTACACAAATGATGAATTCA+AGG 0.424939 7_3:+31900387 Msa1101240:CDS
AATTCATCATTTGTGTAAGA+AGG 0.426182 7_3:-31900382 None:intergenic
TTCTTCACTTCCACCTCTCA+TGG 0.435878 7_3:+31900357 Msa1101240:CDS
GAGATTTGATTGGTTGGAAA+TGG 0.436083 7_3:-31900578 None:intergenic
ACTAGACATGGAAAGGAATA+GGG 0.439010 7_3:+31900813 Msa1101240:CDS
AAAAGACCAGAAGAAATTTG+AGG 0.442270 7_3:-31900295 None:intergenic
AAAAGGAGAAAAGACTAATT+GGG 0.445684 7_3:+31899820 Msa1101240:CDS
GTTGTTGAGATTTGATTGGT+TGG 0.457220 7_3:-31900584 None:intergenic
AAAAGAAGAGAGTGATGAAG+AGG 0.472826 7_3:-31899185 None:intergenic
AAATGCAGAGAAAGCAAAGA+TGG 0.474276 7_3:+31899607 Msa1101240:intron
AAGATATAGTTTGCGATCCA+TGG 0.474574 7_3:+31900937 Msa1101240:three_prime_UTR
TGTTTGTTATCTCACTGAAA+AGG 0.477354 7_3:+31899360 Msa1101240:CDS
AAAGATAGAAAATATCCAAC+AGG 0.478419 7_3:+31899659 Msa1101240:CDS
TTTGAACAAGTGTGAACCTT+GGG 0.484109 7_3:+31899426 Msa1101240:CDS
ACAAAGAGATTTATCACAAA+GGG 0.487290 7_3:+31899735 Msa1101240:CDS
GGTTATGCATGAATTCAGAT+TGG 0.489927 7_3:+31899841 Msa1101240:CDS
TCAAACCAATCACAAGATAC+AGG 0.493243 7_3:+31900757 Msa1101240:CDS
TCTGGTTACTGGAAAGCTAC+AGG 0.498363 7_3:+31899707 Msa1101240:CDS
CAAAGATGGGAGAGAAAGAA+TGG 0.500063 7_3:+31899621 Msa1101240:CDS
GTGGGTTGTTGAGATTTGAT+TGG 0.500225 7_3:-31900588 None:intergenic
AAAGGAATCCAGAACCTTGT+TGG 0.500661 7_3:+31899758 Msa1101240:CDS
TAATTAACACTGAAAAGTCT+TGG 0.502552 7_3:-31901142 None:intergenic
GAAGTGTAGTTCATCATGGT+TGG 0.509242 7_3:-31900556 None:intergenic
GGATGAATGGGTTGTGTCAA+GGG 0.511195 7_3:+31900243 Msa1101240:intron
TAATCTCCCTAACAAAGAAA+AGG 0.513609 7_3:+31899883 Msa1101240:CDS
GAGAGAGGTGCAACTGATGA+AGG 0.515723 7_3:-31900859 None:intergenic
ACCATAAACACTTGTTGGCA+TGG 0.518988 7_3:-31900695 None:intergenic
TCAAATCTCAACAACCCACT+TGG 0.533355 7_3:+31900592 Msa1101240:CDS
TTATCTCAGCATCTGTTGGA+TGG 0.533789 7_3:-31899336 None:intergenic
ACAATTATCTCAGCATCTGT+TGG 0.534890 7_3:-31899340 None:intergenic
ATGCATGAATTCAGATTGGA+AGG 0.538884 7_3:+31899845 Msa1101240:CDS
GAACCAATTGTTGTTAACAA+AGG 0.542600 7_3:+31899274 Msa1101240:CDS
TATCAAAACTAGACATGGAA+AGG 0.546823 7_3:+31900806 Msa1101240:CDS
GAGATTTATCACAAAGGGAA+AGG 0.551896 7_3:+31899740 Msa1101240:CDS
GTGAGAGTGTGTTTCCAAGT+GGG 0.560776 7_3:-31900606 None:intergenic
TACACAAATGATGAATTCAA+GGG 0.563342 7_3:+31900388 Msa1101240:CDS
AACTAAGAATAATGAGTGCA+AGG 0.563943 7_3:+31900720 Msa1101240:CDS
AACTTACTTGGTAAATCCCA+AGG 0.565147 7_3:-31899442 None:intergenic
GCATTGTATGATGATCTTGA+AGG 0.568104 7_3:+31900835 Msa1101240:CDS
AGGATGAATGGGTTGTGTCA+AGG 0.568459 7_3:+31900242 Msa1101240:intron
TATAAAGGAAGAGCTCCAAA+AGG 0.577032 7_3:+31899803 Msa1101240:CDS
GTTGGATGGAATCTGAAACC+TGG 0.577786 7_3:-31899322 None:intergenic
AGCTGTATCAAAACTAGACA+TGG 0.580538 7_3:+31900801 Msa1101240:CDS
CCATCAAAATCACAGTCAGA+TGG 0.582408 7_3:+31900430 Msa1101240:CDS
GACAAAGAGATTTATCACAA+AGG 0.593116 7_3:+31899734 Msa1101240:CDS
AATGCAGAGAAAGCAAAGAT+GGG 0.604056 7_3:+31899608 Msa1101240:intron
TTATTGTTGATGGAGAAGCT+TGG 0.606215 7_3:-31900463 None:intergenic
AAGTTGAAGAAGATGATGAG+AGG 0.611314 7_3:+31900909 Msa1101240:exon
ATTTGAACAAGTGTGAACCT+TGG 0.620030 7_3:+31899425 Msa1101240:CDS
TAAGAAGGATCCATGAGAGG+TGG 0.627347 7_3:-31900367 None:intergenic
AATGGAAGTGTAGTTCATCA+TGG 0.641352 7_3:-31900560 None:intergenic
AAACTATCCAAATCTGAGAG+AGG 0.646356 7_3:-31900874 None:intergenic
TGTGAGAGTGTGTTTCCAAG+TGG 0.649310 7_3:-31900607 None:intergenic
GTGTAAGAAGGATCCATGAG+AGG 0.664920 7_3:-31900370 None:intergenic
GAGTCTTCTTCATACCAACA+AGG 0.697898 7_3:-31899772 None:intergenic
TAAGAATAATGAGTGCAAGG+TGG 0.699474 7_3:+31900723 Msa1101240:CDS
GGATGGAATCTGAAACCTGG+AGG 0.741573 7_3:-31899319 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTGTGTAAAAAAAAAAAAA+TGG + chr7_3:31899249-31899268 Msa1101240:exon 15.0%
!! TAACAATAATAAAACTTACT+TGG - chr7_3:31899457-31899476 None:intergenic 15.0%
!!! ATCAATTTGCTTTTTATATA+TGG - chr7_3:31899991-31900010 None:intergenic 15.0%
!! AAAACCATATAATCATTAAA+AGG - chr7_3:31900174-31900193 None:intergenic 15.0%
!! CAAACAAAACATATATAATT+TGG - chr7_3:31901011-31901030 None:intergenic 15.0%
!! TGTGTGTAAAAAAAAAAAAA+TGG + chr7_3:31899249-31899268 Msa1101240:exon 15.0%
!! TAACAATAATAAAACTTACT+TGG - chr7_3:31899457-31899476 None:intergenic 15.0%
!!! ATCAATTTGCTTTTTATATA+TGG - chr7_3:31899991-31900010 None:intergenic 15.0%
!! AAAACCATATAATCATTAAA+AGG - chr7_3:31900174-31900193 None:intergenic 15.0%
!! CAAACAAAACATATATAATT+TGG - chr7_3:31901011-31901030 None:intergenic 15.0%
!!! TTTTTTTACACACAAAACAA+AGG - chr7_3:31899243-31899262 None:intergenic 20.0%
!!! AGTTCCTTTTAATGATTATA+TGG + chr7_3:31900167-31900186 Msa1101240:intron 20.0%
!!! TTGTTTTTTTGTTATTGTGT+AGG + chr7_3:31900222-31900241 Msa1101240:intron 20.0%
!! ACTACTTTATGTATCAAAAT+AGG + chr7_3:31900662-31900681 Msa1101240:CDS 20.0%
!!! TTTTTTTACACACAAAACAA+AGG - chr7_3:31899243-31899262 None:intergenic 20.0%
!!! AGTTCCTTTTAATGATTATA+TGG + chr7_3:31900167-31900186 Msa1101240:intron 20.0%
!!! TTGTTTTTTTGTTATTGTGT+AGG + chr7_3:31900222-31900241 Msa1101240:intron 20.0%
!! ACTACTTTATGTATCAAAAT+AGG + chr7_3:31900662-31900681 Msa1101240:CDS 20.0%
! AAAGATAGAAAATATCCAAC+AGG + chr7_3:31899659-31899678 Msa1101240:CDS 25.0%
! ACAAAGAGATTTATCACAAA+GGG + chr7_3:31899735-31899754 Msa1101240:CDS 25.0%
! AAAAGGAGAAAAGACTAATT+GGG + chr7_3:31899820-31899839 Msa1101240:CDS 25.0%
! ATAGAGATTGAATTCAATCA+TGG + chr7_3:31900051-31900070 Msa1101240:intron 25.0%
! AAAAAACCTCAAATTTCTTC+TGG + chr7_3:31900289-31900308 Msa1101240:CDS 25.0%
!!! AAATTTCTTCTGGTCTTTTA+AGG + chr7_3:31900299-31900318 Msa1101240:CDS 25.0%
!!! CTTTTAAGGATAAACTCAAT+TGG + chr7_3:31900313-31900332 Msa1101240:CDS 25.0%
! AATTCATCATTTGTGTAAGA+AGG - chr7_3:31900385-31900404 None:intergenic 25.0%
! TTACACAAATGATGAATTCA+AGG + chr7_3:31900387-31900406 Msa1101240:CDS 25.0%
! TACACAAATGATGAATTCAA+GGG + chr7_3:31900388-31900407 Msa1101240:CDS 25.0%
!!! TTTTGATGGAATTTGTTGAT+TGG - chr7_3:31900419-31900438 None:intergenic 25.0%
!! TTGATGTTGATTATTGTTGA+TGG - chr7_3:31900476-31900495 None:intergenic 25.0%
! ATTCTATGGTAATTATCTTC+TGG - chr7_3:31900511-31900530 None:intergenic 25.0%
!! TACATAAAGTAGTTCAAGTT+TGG - chr7_3:31900655-31900674 None:intergenic 25.0%
! TAAACATTATTAGGCATCAT+AGG + chr7_3:31901075-31901094 Msa1101240:three_prime_UTR 25.0%
! TAATTAACACTGAAAAGTCT+TGG - chr7_3:31901145-31901164 None:intergenic 25.0%
!! TATTCATAGATTTTATCGAG+AGG + chr7_3:31901182-31901201 Msa1101240:three_prime_UTR 25.0%
! AAAGATAGAAAATATCCAAC+AGG + chr7_3:31899659-31899678 Msa1101240:CDS 25.0%
! ACAAAGAGATTTATCACAAA+GGG + chr7_3:31899735-31899754 Msa1101240:CDS 25.0%
! AAAAGGAGAAAAGACTAATT+GGG + chr7_3:31899820-31899839 Msa1101240:CDS 25.0%
! ATAGAGATTGAATTCAATCA+TGG + chr7_3:31900051-31900070 Msa1101240:intron 25.0%
! AAAAAACCTCAAATTTCTTC+TGG + chr7_3:31900289-31900308 Msa1101240:CDS 25.0%
!!! AAATTTCTTCTGGTCTTTTA+AGG + chr7_3:31900299-31900318 Msa1101240:CDS 25.0%
!!! CTTTTAAGGATAAACTCAAT+TGG + chr7_3:31900313-31900332 Msa1101240:CDS 25.0%
! AATTCATCATTTGTGTAAGA+AGG - chr7_3:31900385-31900404 None:intergenic 25.0%
! TTACACAAATGATGAATTCA+AGG + chr7_3:31900387-31900406 Msa1101240:CDS 25.0%
! TACACAAATGATGAATTCAA+GGG + chr7_3:31900388-31900407 Msa1101240:CDS 25.0%
!!! TTTTGATGGAATTTGTTGAT+TGG - chr7_3:31900419-31900438 None:intergenic 25.0%
!! TTGATGTTGATTATTGTTGA+TGG - chr7_3:31900476-31900495 None:intergenic 25.0%
! ATTCTATGGTAATTATCTTC+TGG - chr7_3:31900511-31900530 None:intergenic 25.0%
!! TACATAAAGTAGTTCAAGTT+TGG - chr7_3:31900655-31900674 None:intergenic 25.0%
! TAAACATTATTAGGCATCAT+AGG + chr7_3:31901075-31901094 Msa1101240:three_prime_UTR 25.0%
! TAATTAACACTGAAAAGTCT+TGG - chr7_3:31901145-31901164 None:intergenic 25.0%
!! TATTCATAGATTTTATCGAG+AGG + chr7_3:31901182-31901201 Msa1101240:three_prime_UTR 25.0%
! GAACCAATTGTTGTTAACAA+AGG + chr7_3:31899274-31899293 Msa1101240:CDS 30.0%
TCACCTTTGTTAACAACAAT+TGG - chr7_3:31899280-31899299 None:intergenic 30.0%
!! TGTTTGTTATCTCACTGAAA+AGG + chr7_3:31899360-31899379 Msa1101240:CDS 30.0%
GACAAAGAGATTTATCACAA+AGG + chr7_3:31899734-31899753 Msa1101240:CDS 30.0%
AAGACTCTTGTGTTCTATAA+AGG + chr7_3:31899788-31899807 Msa1101240:CDS 30.0%
!!! CAATTAGTCTTTTCTCCTTT+TGG - chr7_3:31899821-31899840 None:intergenic 30.0%
CAAAAGGAGAAAAGACTAAT+TGG + chr7_3:31899819-31899838 Msa1101240:CDS 30.0%
TAATCTCCCTAACAAAGAAA+AGG + chr7_3:31899883-31899902 Msa1101240:CDS 30.0%
! CACTTTCTAAAAAGTGGTAA+AGG - chr7_3:31900106-31900125 None:intergenic 30.0%
! AGTAGTCACTTTCTAAAAAG+TGG - chr7_3:31900112-31900131 None:intergenic 30.0%
! TTGTTATTGTGTAGGATGAA+TGG + chr7_3:31900230-31900249 Msa1101240:intron 30.0%
TGTTATTGTGTAGGATGAAT+GGG + chr7_3:31900231-31900250 Msa1101240:intron 30.0%
AAAAGACCAGAAGAAATTTG+AGG - chr7_3:31900298-31900317 None:intergenic 30.0%
! GATGATCATAGTTGATTCTA+TGG - chr7_3:31900525-31900544 None:intergenic 30.0%
! TCAAGTTTGGATTTTGGATT+CGG - chr7_3:31900642-31900661 None:intergenic 30.0%
!! AGTAGTTCAAGTTTGGATTT+TGG - chr7_3:31900648-31900667 None:intergenic 30.0%
AACTAAGAATAATGAGTGCA+AGG + chr7_3:31900720-31900739 Msa1101240:CDS 30.0%
TATCAAAACTAGACATGGAA+AGG + chr7_3:31900806-31900825 Msa1101240:CDS 30.0%
! TCTCAGATTTGGATAGTTTT+TGG + chr7_3:31900878-31900897 Msa1101240:CDS 30.0%
! CTCAGATTTGGATAGTTTTT+GGG + chr7_3:31900879-31900898 Msa1101240:CDS 30.0%
!!! ATCCATGGCTTTTTTTATCT+TGG + chr7_3:31900952-31900971 Msa1101240:three_prime_UTR 30.0%
!!! TCCATGGCTTTTTTTATCTT+GGG + chr7_3:31900953-31900972 Msa1101240:three_prime_UTR 30.0%
! GAACCAATTGTTGTTAACAA+AGG + chr7_3:31899274-31899293 Msa1101240:CDS 30.0%
TCACCTTTGTTAACAACAAT+TGG - chr7_3:31899280-31899299 None:intergenic 30.0%
!! TGTTTGTTATCTCACTGAAA+AGG + chr7_3:31899360-31899379 Msa1101240:CDS 30.0%
GACAAAGAGATTTATCACAA+AGG + chr7_3:31899734-31899753 Msa1101240:CDS 30.0%
AAGACTCTTGTGTTCTATAA+AGG + chr7_3:31899788-31899807 Msa1101240:CDS 30.0%
!!! CAATTAGTCTTTTCTCCTTT+TGG - chr7_3:31899821-31899840 None:intergenic 30.0%
CAAAAGGAGAAAAGACTAAT+TGG + chr7_3:31899819-31899838 Msa1101240:CDS 30.0%
TAATCTCCCTAACAAAGAAA+AGG + chr7_3:31899883-31899902 Msa1101240:CDS 30.0%
! CACTTTCTAAAAAGTGGTAA+AGG - chr7_3:31900106-31900125 None:intergenic 30.0%
! AGTAGTCACTTTCTAAAAAG+TGG - chr7_3:31900112-31900131 None:intergenic 30.0%
! TTGTTATTGTGTAGGATGAA+TGG + chr7_3:31900230-31900249 Msa1101240:intron 30.0%
TGTTATTGTGTAGGATGAAT+GGG + chr7_3:31900231-31900250 Msa1101240:intron 30.0%
AAAAGACCAGAAGAAATTTG+AGG - chr7_3:31900298-31900317 None:intergenic 30.0%
! GATGATCATAGTTGATTCTA+TGG - chr7_3:31900525-31900544 None:intergenic 30.0%
! TCAAGTTTGGATTTTGGATT+CGG - chr7_3:31900642-31900661 None:intergenic 30.0%
!! AGTAGTTCAAGTTTGGATTT+TGG - chr7_3:31900648-31900667 None:intergenic 30.0%
AACTAAGAATAATGAGTGCA+AGG + chr7_3:31900720-31900739 Msa1101240:CDS 30.0%
TATCAAAACTAGACATGGAA+AGG + chr7_3:31900806-31900825 Msa1101240:CDS 30.0%
! TCTCAGATTTGGATAGTTTT+TGG + chr7_3:31900878-31900897 Msa1101240:CDS 30.0%
! CTCAGATTTGGATAGTTTTT+GGG + chr7_3:31900879-31900898 Msa1101240:CDS 30.0%
!!! ATCCATGGCTTTTTTTATCT+TGG + chr7_3:31900952-31900971 Msa1101240:three_prime_UTR 30.0%
!!! TCCATGGCTTTTTTTATCTT+GGG + chr7_3:31900953-31900972 Msa1101240:three_prime_UTR 30.0%
AAAAGAAGAGAGTGATGAAG+AGG - chr7_3:31899188-31899207 None:intergenic 35.0%
ACAATTATCTCAGCATCTGT+TGG - chr7_3:31899343-31899362 None:intergenic 35.0%
AAATTCAGTGCAACTGCTAT+TGG + chr7_3:31899394-31899413 Msa1101240:CDS 35.0%
ATTTGAACAAGTGTGAACCT+TGG + chr7_3:31899425-31899444 Msa1101240:CDS 35.0%
TTTGAACAAGTGTGAACCTT+GGG + chr7_3:31899426-31899445 Msa1101240:CDS 35.0%
AACTTACTTGGTAAATCCCA+AGG - chr7_3:31899445-31899464 None:intergenic 35.0%
AAATGCAGAGAAAGCAAAGA+TGG + chr7_3:31899607-31899626 Msa1101240:intron 35.0%
AATGCAGAGAAAGCAAAGAT+GGG + chr7_3:31899608-31899627 Msa1101240:intron 35.0%
CTATTTGTTCTCATACCTGT+TGG - chr7_3:31899677-31899696 None:intergenic 35.0%
ACAAATAGAGCAACTGAATC+TGG + chr7_3:31899689-31899708 Msa1101240:CDS 35.0%
GAGATTTATCACAAAGGGAA+AGG + chr7_3:31899740-31899759 Msa1101240:CDS 35.0%
TATAAAGGAAGAGCTCCAAA+AGG + chr7_3:31899803-31899822 Msa1101240:CDS 35.0%
GGTTATGCATGAATTCAGAT+TGG + chr7_3:31899841-31899860 Msa1101240:CDS 35.0%
ATGCATGAATTCAGATTGGA+AGG + chr7_3:31899845-31899864 Msa1101240:CDS 35.0%
TCCCTAACAAAGAAAAGGTA+CGG + chr7_3:31899888-31899907 Msa1101240:intron 35.0%
! TCCGTACCTTTTCTTTGTTA+GGG - chr7_3:31899892-31899911 None:intergenic 35.0%
! ATCCGTACCTTTTCTTTGTT+AGG - chr7_3:31899893-31899912 None:intergenic 35.0%
! AGTGGTAAAGGTGCAAATTA+TGG - chr7_3:31900094-31900113 None:intergenic 35.0%
! TTATTGTTGATGGAGAAGCT+TGG - chr7_3:31900466-31900485 None:intergenic 35.0%
! AATGGAAGTGTAGTTCATCA+TGG - chr7_3:31900563-31900582 None:intergenic 35.0%
! GAGATTTGATTGGTTGGAAA+TGG - chr7_3:31900581-31900600 None:intergenic 35.0%
GTTGTTGAGATTTGATTGGT+TGG - chr7_3:31900587-31900606 None:intergenic 35.0%
GTTGAACCATAAACACTTGT+TGG - chr7_3:31900703-31900722 None:intergenic 35.0%
TAAGAATAATGAGTGCAAGG+TGG + chr7_3:31900723-31900742 Msa1101240:CDS 35.0%
TCAAACCAATCACAAGATAC+AGG + chr7_3:31900757-31900776 Msa1101240:CDS 35.0%
AGCTGTATCAAAACTAGACA+TGG + chr7_3:31900801-31900820 Msa1101240:CDS 35.0%
AACTAGACATGGAAAGGAAT+AGG + chr7_3:31900812-31900831 Msa1101240:CDS 35.0%
ACTAGACATGGAAAGGAATA+GGG + chr7_3:31900813-31900832 Msa1101240:CDS 35.0%
GCATTGTATGATGATCTTGA+AGG + chr7_3:31900835-31900854 Msa1101240:CDS 35.0%
AAACTATCCAAATCTGAGAG+AGG - chr7_3:31900877-31900896 None:intergenic 35.0%
AAGTTGAAGAAGATGATGAG+AGG + chr7_3:31900909-31900928 Msa1101240:exon 35.0%
! AAGATATAGTTTGCGATCCA+TGG + chr7_3:31900937-31900956 Msa1101240:three_prime_UTR 35.0%
TCCCAAGATAAAAAAAGCCA+TGG - chr7_3:31900957-31900976 None:intergenic 35.0%
AAAAGAAGAGAGTGATGAAG+AGG - chr7_3:31899188-31899207 None:intergenic 35.0%
ACAATTATCTCAGCATCTGT+TGG - chr7_3:31899343-31899362 None:intergenic 35.0%
AAATTCAGTGCAACTGCTAT+TGG + chr7_3:31899394-31899413 Msa1101240:CDS 35.0%
ATTTGAACAAGTGTGAACCT+TGG + chr7_3:31899425-31899444 Msa1101240:CDS 35.0%
TTTGAACAAGTGTGAACCTT+GGG + chr7_3:31899426-31899445 Msa1101240:CDS 35.0%
AACTTACTTGGTAAATCCCA+AGG - chr7_3:31899445-31899464 None:intergenic 35.0%
AAATGCAGAGAAAGCAAAGA+TGG + chr7_3:31899607-31899626 Msa1101240:intron 35.0%
AATGCAGAGAAAGCAAAGAT+GGG + chr7_3:31899608-31899627 Msa1101240:intron 35.0%
CTATTTGTTCTCATACCTGT+TGG - chr7_3:31899677-31899696 None:intergenic 35.0%
ACAAATAGAGCAACTGAATC+TGG + chr7_3:31899689-31899708 Msa1101240:CDS 35.0%
GAGATTTATCACAAAGGGAA+AGG + chr7_3:31899740-31899759 Msa1101240:CDS 35.0%
TATAAAGGAAGAGCTCCAAA+AGG + chr7_3:31899803-31899822 Msa1101240:CDS 35.0%
GGTTATGCATGAATTCAGAT+TGG + chr7_3:31899841-31899860 Msa1101240:CDS 35.0%
ATGCATGAATTCAGATTGGA+AGG + chr7_3:31899845-31899864 Msa1101240:CDS 35.0%
TCCCTAACAAAGAAAAGGTA+CGG + chr7_3:31899888-31899907 Msa1101240:intron 35.0%
! TCCGTACCTTTTCTTTGTTA+GGG - chr7_3:31899892-31899911 None:intergenic 35.0%
! ATCCGTACCTTTTCTTTGTT+AGG - chr7_3:31899893-31899912 None:intergenic 35.0%
! AGTGGTAAAGGTGCAAATTA+TGG - chr7_3:31900094-31900113 None:intergenic 35.0%
! TTATTGTTGATGGAGAAGCT+TGG - chr7_3:31900466-31900485 None:intergenic 35.0%
! AATGGAAGTGTAGTTCATCA+TGG - chr7_3:31900563-31900582 None:intergenic 35.0%
! GAGATTTGATTGGTTGGAAA+TGG - chr7_3:31900581-31900600 None:intergenic 35.0%
GTTGTTGAGATTTGATTGGT+TGG - chr7_3:31900587-31900606 None:intergenic 35.0%
GTTGAACCATAAACACTTGT+TGG - chr7_3:31900703-31900722 None:intergenic 35.0%
TAAGAATAATGAGTGCAAGG+TGG + chr7_3:31900723-31900742 Msa1101240:CDS 35.0%
TCAAACCAATCACAAGATAC+AGG + chr7_3:31900757-31900776 Msa1101240:CDS 35.0%
AGCTGTATCAAAACTAGACA+TGG + chr7_3:31900801-31900820 Msa1101240:CDS 35.0%
AACTAGACATGGAAAGGAAT+AGG + chr7_3:31900812-31900831 Msa1101240:CDS 35.0%
ACTAGACATGGAAAGGAATA+GGG + chr7_3:31900813-31900832 Msa1101240:CDS 35.0%
GCATTGTATGATGATCTTGA+AGG + chr7_3:31900835-31900854 Msa1101240:CDS 35.0%
AAACTATCCAAATCTGAGAG+AGG - chr7_3:31900877-31900896 None:intergenic 35.0%
AAGTTGAAGAAGATGATGAG+AGG + chr7_3:31900909-31900928 Msa1101240:exon 35.0%
! AAGATATAGTTTGCGATCCA+TGG + chr7_3:31900937-31900956 Msa1101240:three_prime_UTR 35.0%
TCCCAAGATAAAAAAAGCCA+TGG - chr7_3:31900957-31900976 None:intergenic 35.0%
TTATCTCAGCATCTGTTGGA+TGG - chr7_3:31899339-31899358 None:intergenic 40.0%
CAAAGATGGGAGAGAAAGAA+TGG + chr7_3:31899621-31899640 Msa1101240:CDS 40.0%
AAAGGAATCCAGAACCTTGT+TGG + chr7_3:31899758-31899777 Msa1101240:CDS 40.0%
TCTTCATACCAACAAGGTTC+TGG - chr7_3:31899769-31899788 None:intergenic 40.0%
GAGTCTTCTTCATACCAACA+AGG - chr7_3:31899775-31899794 None:intergenic 40.0%
TAATGAACTCAGATCCTCGA+CGG + chr7_3:31899913-31899932 Msa1101240:intron 40.0%
GAGTTAGATGCACTGTAAAG+CGG + chr7_3:31899954-31899973 Msa1101240:intron 40.0%
! CCATCTGACTGTGATTTTGA+TGG - chr7_3:31900433-31900452 None:intergenic 40.0%
CCATCAAAATCACAGTCAGA+TGG + chr7_3:31900430-31900449 Msa1101240:CDS 40.0%
GAAGTGTAGTTCATCATGGT+TGG - chr7_3:31900559-31900578 None:intergenic 40.0%
! GTGGGTTGTTGAGATTTGAT+TGG - chr7_3:31900591-31900610 None:intergenic 40.0%
TCAAATCTCAACAACCCACT+TGG + chr7_3:31900592-31900611 Msa1101240:CDS 40.0%
! GGATTTTGGATTCGGATTTG+AGG - chr7_3:31900634-31900653 None:intergenic 40.0%
TCCATGCCAACAAGTGTTTA+TGG + chr7_3:31900694-31900713 Msa1101240:CDS 40.0%
! ACCATAAACACTTGTTGGCA+TGG - chr7_3:31900698-31900717 None:intergenic 40.0%
TGAGACCTGTATCTTGTGAT+TGG - chr7_3:31900765-31900784 None:intergenic 40.0%
AGGCATCATAGGAAAGTTCT+TGG + chr7_3:31901086-31901105 Msa1101240:three_prime_UTR 40.0%
TTATCTCAGCATCTGTTGGA+TGG - chr7_3:31899339-31899358 None:intergenic 40.0%
CAAAGATGGGAGAGAAAGAA+TGG + chr7_3:31899621-31899640 Msa1101240:CDS 40.0%
AAAGGAATCCAGAACCTTGT+TGG + chr7_3:31899758-31899777 Msa1101240:CDS 40.0%
TCTTCATACCAACAAGGTTC+TGG - chr7_3:31899769-31899788 None:intergenic 40.0%
GAGTCTTCTTCATACCAACA+AGG - chr7_3:31899775-31899794 None:intergenic 40.0%
TAATGAACTCAGATCCTCGA+CGG + chr7_3:31899913-31899932 Msa1101240:intron 40.0%
GAGTTAGATGCACTGTAAAG+CGG + chr7_3:31899954-31899973 Msa1101240:intron 40.0%
! CCATCTGACTGTGATTTTGA+TGG - chr7_3:31900433-31900452 None:intergenic 40.0%
CCATCAAAATCACAGTCAGA+TGG + chr7_3:31900430-31900449 Msa1101240:CDS 40.0%
GAAGTGTAGTTCATCATGGT+TGG - chr7_3:31900559-31900578 None:intergenic 40.0%
! GTGGGTTGTTGAGATTTGAT+TGG - chr7_3:31900591-31900610 None:intergenic 40.0%
TCAAATCTCAACAACCCACT+TGG + chr7_3:31900592-31900611 Msa1101240:CDS 40.0%
! GGATTTTGGATTCGGATTTG+AGG - chr7_3:31900634-31900653 None:intergenic 40.0%
TCCATGCCAACAAGTGTTTA+TGG + chr7_3:31900694-31900713 Msa1101240:CDS 40.0%
! ACCATAAACACTTGTTGGCA+TGG - chr7_3:31900698-31900717 None:intergenic 40.0%
TGAGACCTGTATCTTGTGAT+TGG - chr7_3:31900765-31900784 None:intergenic 40.0%
AGGCATCATAGGAAAGTTCT+TGG + chr7_3:31901086-31901105 Msa1101240:three_prime_UTR 40.0%
CAAACTCTTGATCTTCCTCC+AGG + chr7_3:31899304-31899323 Msa1101240:CDS 45.0%
! GTTGGATGGAATCTGAAACC+TGG - chr7_3:31899325-31899344 None:intergenic 45.0%
GAGCAACTGAATCTGGTTAC+TGG + chr7_3:31899696-31899715 Msa1101240:CDS 45.0%
TCTGGTTACTGGAAAGCTAC+AGG + chr7_3:31899707-31899726 Msa1101240:CDS 45.0%
!! AGGATGAATGGGTTGTGTCA+AGG + chr7_3:31900242-31900261 Msa1101240:intron 45.0%
!! GGATGAATGGGTTGTGTCAA+GGG + chr7_3:31900243-31900262 Msa1101240:intron 45.0%
TTCTTCACTTCCACCTCTCA+TGG + chr7_3:31900357-31900376 Msa1101240:CDS 45.0%
TAAGAAGGATCCATGAGAGG+TGG - chr7_3:31900370-31900389 None:intergenic 45.0%
GTGTAAGAAGGATCCATGAG+AGG - chr7_3:31900373-31900392 None:intergenic 45.0%
! GTGAGAGTGTGTTTCCAAGT+GGG - chr7_3:31900609-31900628 None:intergenic 45.0%
! TGTGAGAGTGTGTTTCCAAG+TGG - chr7_3:31900610-31900629 None:intergenic 45.0%
AGTTGCACCTCTCTCAGATT+TGG + chr7_3:31900867-31900886 Msa1101240:CDS 45.0%
CAAACTCTTGATCTTCCTCC+AGG + chr7_3:31899304-31899323 Msa1101240:CDS 45.0%
! GTTGGATGGAATCTGAAACC+TGG - chr7_3:31899325-31899344 None:intergenic 45.0%
GAGCAACTGAATCTGGTTAC+TGG + chr7_3:31899696-31899715 Msa1101240:CDS 45.0%
TCTGGTTACTGGAAAGCTAC+AGG + chr7_3:31899707-31899726 Msa1101240:CDS 45.0%
!! AGGATGAATGGGTTGTGTCA+AGG + chr7_3:31900242-31900261 Msa1101240:intron 45.0%
!! GGATGAATGGGTTGTGTCAA+GGG + chr7_3:31900243-31900262 Msa1101240:intron 45.0%
TTCTTCACTTCCACCTCTCA+TGG + chr7_3:31900357-31900376 Msa1101240:CDS 45.0%
TAAGAAGGATCCATGAGAGG+TGG - chr7_3:31900370-31900389 None:intergenic 45.0%
GTGTAAGAAGGATCCATGAG+AGG - chr7_3:31900373-31900392 None:intergenic 45.0%
! GTGAGAGTGTGTTTCCAAGT+GGG - chr7_3:31900609-31900628 None:intergenic 45.0%
! TGTGAGAGTGTGTTTCCAAG+TGG - chr7_3:31900610-31900629 None:intergenic 45.0%
AGTTGCACCTCTCTCAGATT+TGG + chr7_3:31900867-31900886 Msa1101240:CDS 45.0%
!! TTTATATTATAAACATTATT+AGG + chr7_3:31901066-31901085 Msa1101240:three_prime_UTR 5.0%
!! TTTATATTATAAACATTATT+AGG + chr7_3:31901066-31901085 Msa1101240:three_prime_UTR 5.0%
! GGATGGAATCTGAAACCTGG+AGG - chr7_3:31899322-31899341 None:intergenic 50.0%
! GAGAGAGGTGCAACTGATGA+AGG - chr7_3:31900862-31900881 None:intergenic 50.0%
! GGATGGAATCTGAAACCTGG+AGG - chr7_3:31899322-31899341 None:intergenic 50.0%
! GAGAGAGGTGCAACTGATGA+AGG - chr7_3:31900862-31900881 None:intergenic 50.0%
GCACTCTAACACAGCCGTCG+AGG - chr7_3:31899930-31899949 None:intergenic 60.0%
GCACTCTAACACAGCCGTCG+AGG - chr7_3:31899930-31899949 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 31899090 31901245 31899090 ID=Msa1101240;Name=Msa1101240
chr7_3 mRNA 31899090 31901245 31899090 ID=Msa1101240-mRNA-1;Parent=Msa1101240;Name=Msa1101240-mRNA-1;_AED=0.02;_eAED=0.02;_QI=178|1|1|1|1|1|3|336|381
chr7_3 exon 31899090 31899457 31899090 ID=Msa1101240-mRNA-1:exon:6837;Parent=Msa1101240-mRNA-1
chr7_3 exon 31899615 31899904 31899615 ID=Msa1101240-mRNA-1:exon:6838;Parent=Msa1101240-mRNA-1
chr7_3 exon 31900244 31901245 31900244 ID=Msa1101240-mRNA-1:exon:6839;Parent=Msa1101240-mRNA-1
chr7_3 five_prime_UTR 31899090 31899267 31899090 ID=Msa1101240-mRNA-1:five_prime_utr;Parent=Msa1101240-mRNA-1
chr7_3 CDS 31899268 31899457 31899268 ID=Msa1101240-mRNA-1:cds;Parent=Msa1101240-mRNA-1
chr7_3 CDS 31899615 31899904 31899615 ID=Msa1101240-mRNA-1:cds;Parent=Msa1101240-mRNA-1
chr7_3 CDS 31900244 31900909 31900244 ID=Msa1101240-mRNA-1:cds;Parent=Msa1101240-mRNA-1
chr7_3 three_prime_UTR 31900910 31901245 31900910 ID=Msa1101240-mRNA-1:three_prime_utr;Parent=Msa1101240-mRNA-1
Gene Sequence

>Msa1101240

ATGGAAGAACCAATTGTTGTTAACAAAGGTGAAGATCAAACTCTTGATCTTCCTCCAGGTTTCAGATTCCATCCAACAGATGCTGAGATAATTGTTTGTTATCTCACTGAAAAGGTTAAAAATAGCAAATTCAGTGCAACTGCTATTGGTGAAGCTGATTTGAACAAGTGTGAACCTTGGGATTTACCAAAGAAAGCAAAGATGGGAGAGAAAGAATGGTACTTTTTTTGTCAGAAAGATAGAAAATATCCAACAGGTATGAGAACAAATAGAGCAACTGAATCTGGTTACTGGAAAGCTACAGGAAAAGACAAAGAGATTTATCACAAAGGGAAAGGAATCCAGAACCTTGTTGGTATGAAGAAGACTCTTGTGTTCTATAAAGGAAGAGCTCCAAAAGGAGAAAAGACTAATTGGGTTATGCATGAATTCAGATTGGAAGGCAAATTTGCAACTCATAATCTCCCTAACAAAGAAAAGGATGAATGGGTTGTGTCAAGGGTTTTTCACAAGAACACAGATGTTAAAAAACCTCAAATTTCTTCTGGTCTTTTAAGGATAAACTCAATTGGTCATGATGATCTTCTTGATTATTCTTCACTTCCACCTCTCATGGATCCTTCTTACACAAATGATGAATTCAAGGGAATCACCAATCAACAAATTCCATCAAAATCACAGTCAGATGGATATTATCTTCCAAGCTTCTCCATCAACAATAATCAACATCAATTTGTCATCAAGCCAGAAGATAATTACCATAGAATCAACTATGATCATCATGAGATAAATCCAACCATGATGAACTACACTTCCATTTCCAACCAATCAAATCTCAACAACCCACTTGGAAACACACTCTCACAACCTCAAATCCGAATCCAAAATCCAAACTTGAACTACTTTATGTATCAAAATAGGATGCAAAGTTCCATGCCAACAAGTGTTTATGGTTCAACTAAGAATAATGAGTGCAAGGTGGAACAATTCTCTTCAAACCAATCACAAGATACAGGTCTCAGCAATGACACATCATCAGCTGTATCAAAACTAGACATGGAAAGGAATAGGGCATTGTATGATGATCTTGAAGGTCCTTCATCAGTTGCACCTCTCTCAGATTTGGATAGTTTTTGGGACTATTGA

Protein sequence

>Msa1101240

MEEPIVVNKGEDQTLDLPPGFRFHPTDAEIIVCYLTEKVKNSKFSATAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYHKGKGIQNLVGMKKTLVFYKGRAPKGEKTNWVMHEFRLEGKFATHNLPNKEKDEWVVSRVFHKNTDVKKPQISSGLLRINSIGHDDLLDYSSLPPLMDPSYTNDEFKGITNQQIPSKSQSDGYYLPSFSINNNQHQFVIKPEDNYHRINYDHHEINPTMMNYTSISNQSNLNNPLGNTLSQPQIRIQNPNLNYFMYQNRMQSSMPTSVYGSTKNNECKVEQFSSNQSQDTGLSNDTSSAVSKLDMERNRALYDDLEGPSSVAPLSDLDSFWDY*