Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327810 | XP_003595886.1 | 98.582 | 423 | 6 | 0 | 1 | 423 | 1 | 423 | 0.0 | 858 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327810 | sp|O22718|ACLA2_ARATH | 87.707 | 423 | 52 | 0 | 1 | 423 | 1 | 423 | 0.0 | 773 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0208480 | Msa0327810 | 0.807042 | 6.130934e-50 | -8.615850e-47 |
| Msa0212300 | Msa0327810 | 0.882790 | 7.751798e-71 | -8.615850e-47 |
| Msa0251210 | Msa0327810 | 0.876521 | 1.307556e-68 | -8.615850e-47 |
| Msa0290050 | Msa0327810 | 0.852705 | 3.873261e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327810 | MtrunA17_Chr2g0309471 | 98.582 | 423 | 6 | 0 | 1 | 423 | 1 | 423 | 0.0 | 858 |
| Msa0327810 | MtrunA17_Chr5g0413331 | 91.017 | 423 | 38 | 0 | 1 | 423 | 1 | 423 | 0.0 | 798 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0327810 | AT1G60810.2 | 87.707 | 423 | 52 | 0 | 1 | 423 | 1 | 423 | 0.0 | 773 |
| Msa0327810 | AT1G60810.1 | 87.707 | 423 | 52 | 0 | 1 | 423 | 1 | 423 | 0.0 | 773 |
| Msa0327810 | AT1G10670.4 | 86.998 | 423 | 55 | 0 | 1 | 423 | 1 | 423 | 0.0 | 771 |
| Msa0327810 | AT1G10670.2 | 86.998 | 423 | 55 | 0 | 1 | 423 | 1 | 423 | 0.0 | 771 |
| Msa0327810 | AT1G10670.1 | 86.998 | 423 | 55 | 0 | 1 | 423 | 1 | 423 | 0.0 | 771 |
| Msa0327810 | AT1G10670.3 | 83.070 | 443 | 55 | 1 | 1 | 423 | 1 | 443 | 0.0 | 758 |
| Msa0327810 | AT1G09430.1 | 79.236 | 419 | 87 | 0 | 1 | 419 | 1 | 419 | 0.0 | 704 |
Find 130 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCACCAAATTTCTCAATTC+TGG | 0.201559 | 2_4:+39766979 | None:intergenic |
| TCTACCAGAATTGAGAAATT+TGG | 0.220599 | 2_4:-39766983 | Msa0327810:three_prime_UTR |
| CTTACTTGTGCAGACTTAAT+TGG | 0.235768 | 2_4:+39770473 | None:intergenic |
| GTGAAACCTGACATGCTATT+TGG | 0.259630 | 2_4:-39769618 | Msa0327810:CDS |
| TAAACCCAGTGGGCCGAATT+TGG | 0.260252 | 2_4:-39767965 | Msa0327810:CDS |
| GTCAGGTTTCACAACCAATT+TGG | 0.260494 | 2_4:+39769629 | None:intergenic |
| CCTACCGAGTCTTTCATTCA+TGG | 0.279011 | 2_4:-39768263 | Msa0327810:CDS |
| ATGGCTTTCATCTTCCAAAT+TGG | 0.286910 | 2_4:-39769643 | Msa0327810:CDS |
| TGCTTAGTTATCAATTCTTA+TGG | 0.287007 | 2_4:-39767058 | Msa0327810:exon |
| ATTTCTCAATTCTGGTAGAT+TGG | 0.304242 | 2_4:+39766987 | None:intergenic |
| TGCTAGACCTCTTTGGTAGT+TGG | 0.322062 | 2_4:+39767276 | None:intergenic |
| ATGCCAGTCATTGTTGCTTC+AGG | 0.322959 | 2_4:+39767114 | None:intergenic |
| TCTGCATAATTTCCAAGTTC+AGG | 0.323143 | 2_4:+39767778 | None:intergenic |
| TATTGCTACCCTCCCCTTAG+AGG | 0.326320 | 2_4:-39769051 | Msa0327810:intron |
| CTGCAAGACCTCGCCTTCCT+TGG | 0.327186 | 2_4:+39767741 | None:intergenic |
| CTACATTCAGTGGCATAATT+CGG | 0.332068 | 2_4:-39767502 | Msa0327810:CDS |
| GTTTGTATCATGTAGAATTC+TGG | 0.332973 | 2_4:-39766903 | Msa0327810:three_prime_UTR |
| GCAAAGTGAATATACCTCTA+AGG | 0.337642 | 2_4:+39769037 | None:intergenic |
| TGGTTTGGTTGCCTTGAATC+TGG | 0.344146 | 2_4:-39769580 | Msa0327810:CDS |
| CGATGGAAAGCCTTATCCTT+TGG | 0.345095 | 2_4:-39768513 | Msa0327810:CDS |
| AGGGCACTTGGGGATGAAAT+TGG | 0.346283 | 2_4:-39767247 | Msa0327810:CDS |
| AAGACTGTATTTATTCCAAC+AGG | 0.349617 | 2_4:-39769107 | Msa0327810:CDS |
| ATCGAATTTCCTTTGCCATT+TGG | 0.352222 | 2_4:-39768299 | Msa0327810:CDS |
| CTTGGTTATGCTCCTGAACT+TGG | 0.352483 | 2_4:-39767790 | Msa0327810:CDS |
| GAATTGATATTGAAGAGAAC+TGG | 0.362179 | 2_4:-39769254 | Msa0327810:CDS |
| TTATATTAACCAACCTCAAT+TGG | 0.362241 | 2_4:+39767220 | None:intergenic |
| GCTAGACCTCTTTGGTAGTT+GGG | 0.362251 | 2_4:+39767277 | None:intergenic |
| CTATTACGACCTTCATTGTT+GGG | 0.362409 | 2_4:-39769362 | Msa0327810:CDS |
| CCAACAATGAAGGTCGTAAT+AGG | 0.374850 | 2_4:+39769363 | None:intergenic |
| CTCTACTAGCTCATTGATAT+CGG | 0.376342 | 2_4:+39769674 | None:intergenic |
| TACATTCAGTGGCATAATTC+GGG | 0.377135 | 2_4:-39767501 | Msa0327810:CDS |
| AAATTGAAGTTGTCATAAAT+AGG | 0.378397 | 2_4:+39766771 | None:intergenic |
| TTATAACAGGTCGGAGATCT+TGG | 0.379885 | 2_4:-39767808 | Msa0327810:intron |
| AAATATGTATTTATAGAGTT+AGG | 0.389329 | 2_4:+39770858 | None:intergenic |
| CTCATTGATATCGGTTGATT+CGG | 0.398687 | 2_4:+39769683 | None:intergenic |
| CTGATCTTCTTACGTGCCAT+TGG | 0.415193 | 2_4:+39770557 | None:intergenic |
| TGTGGAAAACTCTGGACTCT+TGG | 0.416396 | 2_4:-39766697 | Msa0327810:three_prime_UTR |
| CAGCTACCATAGTCCAAATT+CGG | 0.439954 | 2_4:+39767952 | None:intergenic |
| AGTGGGCCGAATTTGGACTA+TGG | 0.444146 | 2_4:-39767958 | Msa0327810:CDS |
| GTGGAAAACTCTGGACTCTT+GGG | 0.444192 | 2_4:-39766696 | Msa0327810:three_prime_UTR |
| CCTATTACGACCTTCATTGT+TGG | 0.447306 | 2_4:-39769363 | Msa0327810:CDS |
| TGAAATTGGCATTCCAATTG+AGG | 0.450065 | 2_4:-39767233 | Msa0327810:intron |
| GGTTGCCTTGAATCTGGATG+TGG | 0.453233 | 2_4:-39769574 | Msa0327810:CDS |
| CAAAGTGAATATACCTCTAA+GGG | 0.457604 | 2_4:+39769038 | None:intergenic |
| TGCAAGACCTCGCCTTCCTT+GGG | 0.460623 | 2_4:+39767742 | None:intergenic |
| TGAATGAGAAGGTGTGATAT+TGG | 0.464668 | 2_4:+39770816 | None:intergenic |
| CTTTAAAATATAGGTTGAGA+TGG | 0.473744 | 2_4:-39769400 | Msa0327810:intron |
| AAGCAGAAGCAGTGATGCAC+TGG | 0.476598 | 2_4:+39767076 | None:intergenic |
| CCTCTCATATCCAAAGGATA+AGG | 0.478420 | 2_4:+39768503 | None:intergenic |
| TTTAAAATATAGGTTGAGAT+GGG | 0.478452 | 2_4:-39769399 | Msa0327810:intron |
| TCCAGCCACATCCAGATTCA+AGG | 0.478801 | 2_4:+39769569 | None:intergenic |
| GATGTAAGAGATTCCCCTGT+TGG | 0.482958 | 2_4:+39769092 | None:intergenic |
| ATAGTCCAAATTCGGCCCAC+TGG | 0.483259 | 2_4:+39767960 | None:intergenic |
| AGGTAGAACTCTTCATTATG+TGG | 0.484428 | 2_4:+39769330 | None:intergenic |
| AATGACTGGCATATGCAAAC+AGG | 0.487475 | 2_4:-39767103 | Msa0327810:CDS |
| AAGCGCATCTTTAAAATTCA+CGG | 0.487780 | 2_4:-39767991 | Msa0327810:CDS |
| ATTTGGTGAGAGATAGAGCA+TGG | 0.493523 | 2_4:-39766966 | Msa0327810:three_prime_UTR |
| CATTCATGGATTAGACGAAA+AGG | 0.498036 | 2_4:-39768249 | Msa0327810:intron |
| GCCTTGAATCTGGATGTGGC+TGG | 0.498854 | 2_4:-39769570 | Msa0327810:CDS |
| AATTTCCTTTGCCATTTGGA+AGG | 0.503549 | 2_4:-39768295 | Msa0327810:CDS |
| AATCCTTTCGCTCTTGTCGA+TGG | 0.506060 | 2_4:-39768530 | Msa0327810:CDS |
| TGGCATAATTCGGGCTCTGA+AGG | 0.509155 | 2_4:-39767492 | Msa0327810:CDS |
| TTTGGAAAACGTGGCAAAAG+TGG | 0.509225 | 2_4:-39769600 | Msa0327810:CDS |
| GTCTATCTGAGACAATGTTA+AGG | 0.510544 | 2_4:+39769310 | None:intergenic |
| CACACCTTCTCATTCACCAT+TGG | 0.510969 | 2_4:-39770809 | Msa0327810:five_prime_UTR |
| CGAGCCCTTGTGATCGGAGG+GGG | 0.514169 | 2_4:-39767551 | Msa0327810:CDS |
| CGAATTTGGACTATGGTAGC+TGG | 0.521317 | 2_4:-39767951 | Msa0327810:CDS |
| AAAACGTGGCAAAAGTGGTT+TGG | 0.522182 | 2_4:-39769595 | Msa0327810:CDS |
| TGATTCTAAGAGGTTGTTGA+AGG | 0.527353 | 2_4:-39770528 | Msa0327810:CDS |
| GGACCTGAAGCAACAATGAC+TGG | 0.535680 | 2_4:-39767117 | Msa0327810:CDS |
| TATTGAAGAGAACTGGGATA+AGG | 0.538154 | 2_4:-39769247 | Msa0327810:intron |
| TCAGAGAGTATGATTCTAAG+AGG | 0.541240 | 2_4:-39770538 | Msa0327810:CDS |
| TAGTCCAAATTCGGCCCACT+GGG | 0.544073 | 2_4:+39767961 | None:intergenic |
| AAGGTGTGATATTGGTTGGT+GGG | 0.544237 | 2_4:+39770824 | None:intergenic |
| AAGGGGAGGGTAGCAATAAG+TGG | 0.549058 | 2_4:+39769056 | None:intergenic |
| GGACTCATAACCCTTCCAAA+TGG | 0.550734 | 2_4:+39768284 | None:intergenic |
| TGGACTATGGTAGCTGGAGG+AGG | 0.551064 | 2_4:-39767945 | Msa0327810:CDS |
| TGCGCAACTGCGAATCCTGA+TGG | 0.551312 | 2_4:-39767581 | Msa0327810:CDS |
| AGCGAGCCCTTGTGATCGGA+GGG | 0.555628 | 2_4:-39767553 | Msa0327810:CDS |
| AAAAGAACGTCTAGGAAAAG+AGG | 0.556146 | 2_4:-39769532 | Msa0327810:intron |
| GTTGAGATGGGTGGATGCAA+AGG | 0.556217 | 2_4:-39769387 | Msa0327810:CDS |
| GACGAAAGGCCCAACAATGA+AGG | 0.557159 | 2_4:+39769353 | None:intergenic |
| AAAATATAGGTTGAGATGGG+TGG | 0.559122 | 2_4:-39769396 | Msa0327810:intron |
| ATTTCCTTTGCCATTTGGAA+GGG | 0.559925 | 2_4:-39768294 | Msa0327810:CDS |
| CACATCTATGTGAGGAGAGG+AGG | 0.562998 | 2_4:-39767301 | Msa0327810:CDS |
| CAAAAGCGAGCCCTTGTGAT+CGG | 0.563449 | 2_4:-39767557 | Msa0327810:CDS |
| AACTACCGTTAGAGAGAGAG+AGG | 0.566908 | 2_4:+39770775 | None:intergenic |
| GGTAGAACTCTTCATTATGT+GGG | 0.569405 | 2_4:+39769331 | None:intergenic |
| AATTGATATTGAAGAGAACT+GGG | 0.569900 | 2_4:-39769253 | Msa0327810:CDS |
| TACAGTGGTGCACCCAAGGA+AGG | 0.571330 | 2_4:-39767754 | Msa0327810:CDS |
| AAGCGAGCCCTTGTGATCGG+AGG | 0.575935 | 2_4:-39767554 | Msa0327810:CDS |
| AGAATACAGTGGTGCACCCA+AGG | 0.576171 | 2_4:-39767758 | Msa0327810:CDS |
| CCTTATCCTTTGGATATGAG+AGG | 0.576585 | 2_4:-39768503 | Msa0327810:CDS |
| AGAGGGATAGGTAGATCCAA+TGG | 0.585479 | 2_4:+39770793 | None:intergenic |
| TATCAATGAGCTAGTAGAGA+AGG | 0.587038 | 2_4:-39769670 | Msa0327810:CDS |
| TCTTCATTATGTGGGACGAA+AGG | 0.590237 | 2_4:+39769339 | None:intergenic |
| AATTTAATAATCTAATAAGG+TGG | 0.590349 | 2_4:-39766934 | Msa0327810:three_prime_UTR |
| AACATTGTCTCAGATAGACT+AGG | 0.593258 | 2_4:-39769306 | Msa0327810:CDS |
| GTGAATATACCTCTAAGGGG+AGG | 0.595125 | 2_4:+39769042 | None:intergenic |
| TGGTGCACCCAAGGAAGGCG+AGG | 0.607460 | 2_4:-39767749 | Msa0327810:CDS |
| GAATATTTAAGAAGAACCAA+TGG | 0.608122 | 2_4:-39770573 | Msa0327810:exon |
| GACTGTATTTATTCCAACAG+GGG | 0.608657 | 2_4:-39769105 | Msa0327810:CDS |
| GAGTGTAATATACGCTGATA+CGG | 0.609083 | 2_4:-39767919 | Msa0327810:intron |
| GATGTTGCAGCTACATTCAG+TGG | 0.611612 | 2_4:-39767512 | Msa0327810:CDS |
| ACTGAATGTAGCTGCAACAT+CGG | 0.613576 | 2_4:+39767514 | None:intergenic |
| TGAATATACCTCTAAGGGGA+GGG | 0.614004 | 2_4:+39769043 | None:intergenic |
| ACATTGTCTCAGATAGACTA+GGG | 0.615163 | 2_4:-39769305 | Msa0327810:CDS |
| AGCTCTCCTCTCATATCCAA+AGG | 0.616144 | 2_4:+39768497 | None:intergenic |
| AGATCCAATGGTGAATGAGA+AGG | 0.617106 | 2_4:+39770805 | None:intergenic |
| ATAACCCTTCCAAATGGCAA+AGG | 0.622380 | 2_4:+39768290 | None:intergenic |
| AATTCGGGCTCTGAAGGAGA+AGG | 0.623316 | 2_4:-39767486 | Msa0327810:intron |
| TTTCCATCGACAAGAGCGAA+AGG | 0.628349 | 2_4:+39768527 | None:intergenic |
| GAAGGTGTGATATTGGTTGG+TGG | 0.629292 | 2_4:+39770823 | None:intergenic |
| TTCACGGTGTTAAACCCAGT+GGG | 0.639645 | 2_4:-39767975 | Msa0327810:CDS |
| CCATGAATGAAAGACTCGGT+AGG | 0.645432 | 2_4:+39768263 | None:intergenic |
| TGAGAAGGTGTGATATTGGT+TGG | 0.645907 | 2_4:+39770820 | None:intergenic |
| TAATCCATGAATGAAAGACT+CGG | 0.662277 | 2_4:+39768259 | None:intergenic |
| ACTACCGTTAGAGAGAGAGA+GGG | 0.662518 | 2_4:+39770776 | None:intergenic |
| AGACTGTATTTATTCCAACA+GGG | 0.662665 | 2_4:-39769106 | Msa0327810:CDS |
| GGAAATTATGCAGAATACAG+TGG | 0.663076 | 2_4:-39767769 | Msa0327810:CDS |
| ATGCACATCTATGTGAGGAG+AGG | 0.664234 | 2_4:-39767304 | Msa0327810:CDS |
| AGCTAGTAGAGAAGGAACCA+TGG | 0.679479 | 2_4:-39769662 | Msa0327810:CDS |
| ATTTGGACTATGGTAGCTGG+AGG | 0.680006 | 2_4:-39767948 | Msa0327810:CDS |
| GGAGGTCCCAACTACCAAAG+AGG | 0.680499 | 2_4:-39767283 | Msa0327810:CDS |
| AATTTGGAAGATGAAAGCCA+TGG | 0.684449 | 2_4:+39769645 | None:intergenic |
| GACATGCTATTTGGAAAACG+TGG | 0.688407 | 2_4:-39769609 | Msa0327810:CDS |
| AAAGTGAATATACCTCTAAG+GGG | 0.700220 | 2_4:+39769039 | None:intergenic |
| CAAACATGCACATCTATGTG+AGG | 0.701477 | 2_4:-39767309 | Msa0327810:CDS |
| ATTCACGGTGTTAAACCCAG+TGG | 0.723730 | 2_4:-39767976 | Msa0327810:CDS |
| GCGAGCCCTTGTGATCGGAG+GGG | 0.724383 | 2_4:-39767552 | Msa0327810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTATGAAAATCTT+AGG | - | chr2_4:39769556-39769575 | Msa0327810:CDS | 10.0% |
| !! | AAATATGTATTTATAGAGTT+AGG | + | chr2_4:39766747-39766766 | None:intergenic | 15.0% |
| !!! | TTACAAAATTTGTTTTTGAT+TGG | - | chr2_4:39766933-39766952 | Msa0327810:three_prime_UTR | 15.0% |
| !!! | AAAACTTGTATACATTATTT+TGG | + | chr2_4:39767446-39767465 | None:intergenic | 15.0% |
| !! | ACAATAAAATTATTTACGTT+TGG | + | chr2_4:39767684-39767703 | None:intergenic | 15.0% |
| !!! | ATTTTCTTAATTTATTCTTC+AGG | - | chr2_4:39767893-39767912 | Msa0327810:intron | 15.0% |
| !!! | AAAGTTGATAAAAAAAAAGT+GGG | + | chr2_4:39768138-39768157 | None:intergenic | 15.0% |
| !!! | AAAAGTTGATAAAAAAAAAG+TGG | + | chr2_4:39768139-39768158 | None:intergenic | 15.0% |
| !!! | AACAGAAATATAATTCATTT+TGG | + | chr2_4:39768383-39768402 | None:intergenic | 15.0% |
| !!! | TTATTTTCTCAAATTTTGAT+TGG | + | chr2_4:39768712-39768731 | None:intergenic | 15.0% |
| !!! | ATCAACTAATTAGTTTATTT+TGG | - | chr2_4:39768811-39768830 | Msa0327810:intron | 15.0% |
| !!! | GAATATTAATTGTTATTTGA+AGG | - | chr2_4:39769181-39769200 | Msa0327810:intron | 15.0% |
| !! | TTTATACGAATTATTATAAC+AGG | - | chr2_4:39769781-39769800 | Msa0327810:intron | 15.0% |
| !!! | TTTTTATAATCAATCACAAA+CGG | + | chr2_4:39770205-39770224 | None:intergenic | 15.0% |
| !! | AATTTAATAATCTAATAAGG+TGG | - | chr2_4:39770668-39770687 | Msa0327810:intron | 15.0% |
| !!! | TTTATCTATATATTGTTTTG+TGG | - | chr2_4:39770887-39770906 | Msa0327810:five_prime_UTR | 15.0% |
| !! | TTACAATGAAACTGAAAAAA+AGG | + | chr2_4:39766708-39766727 | None:intergenic | 20.0% |
| !!! | TTTATAGTTCATGTTTTTGA+TGG | - | chr2_4:39767158-39767177 | Msa0327810:intron | 20.0% |
| !!! | TTTTTTAGCTTAAGTTTTGT+TGG | - | chr2_4:39767198-39767217 | Msa0327810:intron | 20.0% |
| !!! | TTTTTAGCTTAAGTTTTGTT+GGG | - | chr2_4:39767199-39767218 | Msa0327810:intron | 20.0% |
| !!! | AATTGATTTTTGTATGTTTG+TGG | - | chr2_4:39767553-39767572 | Msa0327810:CDS | 20.0% |
| !!! | CATGTCTTTCTTTAAAATAT+AGG | - | chr2_4:39768193-39768212 | Msa0327810:intron | 20.0% |
| !!! | TTTAAAATATAGGTTGAGAT+GGG | - | chr2_4:39768203-39768222 | Msa0327810:intron | 20.0% |
| !! | TTATAAAGAAATAAATGAGC+AGG | + | chr2_4:39768434-39768453 | None:intergenic | 20.0% |
| !!! | AACTAATTAGTTTATTTTGG+CGG | - | chr2_4:39768814-39768833 | Msa0327810:intron | 20.0% |
| !!! | GTGATTTTCAATATATTTCA+AGG | - | chr2_4:39768912-39768931 | Msa0327810:intron | 20.0% |
| !! | CAAATAACAATTAATATTCC+TGG | + | chr2_4:39769180-39769199 | None:intergenic | 20.0% |
| !!! | ATGTTCTTTTTATTTTCAGA+TGG | - | chr2_4:39769274-39769293 | Msa0327810:CDS | 20.0% |
| !!! | TGTTCTTTTTATTTTCAGAT+GGG | - | chr2_4:39769275-39769294 | Msa0327810:CDS | 20.0% |
| !! | ATTCATAAGATATTAGTACA+AGG | + | chr2_4:39769494-39769513 | None:intergenic | 20.0% |
| !!! | TTTTATAATCAATCACAAAC+GGG | + | chr2_4:39770204-39770223 | None:intergenic | 20.0% |
| !! | ATACATCAACAATCAATTAA+GGG | + | chr2_4:39770244-39770263 | None:intergenic | 20.0% |
| !! | AATACATCAACAATCAATTA+AGG | + | chr2_4:39770245-39770264 | None:intergenic | 20.0% |
| !! | AAATTGAAGTTGTCATAAAT+AGG | + | chr2_4:39770834-39770853 | None:intergenic | 20.0% |
| !!! | ACTTCAATTTTCTTCTTTAA+AGG | - | chr2_4:39770844-39770863 | Msa0327810:five_prime_UTR | 20.0% |
| !!! | CTTCAATTTTCTTCTTTAAA+GGG | - | chr2_4:39770845-39770864 | Msa0327810:five_prime_UTR | 20.0% |
| ! | ACTGAAAAAAAGGATATGTT+GGG | + | chr2_4:39766698-39766717 | None:intergenic | 25.0% |
| ! | AACTGAAAAAAAGGATATGT+TGG | + | chr2_4:39766699-39766718 | None:intergenic | 25.0% |
| !!! | TTTATCTTGTTTTGTGATGA+AGG | - | chr2_4:39766991-39767010 | Msa0327810:three_prime_UTR | 25.0% |
| !!! | TTATCTTGTTTTGTGATGAA+GGG | - | chr2_4:39766992-39767011 | Msa0327810:three_prime_UTR | 25.0% |
| ! | GAATATTTAAGAAGAACCAA+TGG | - | chr2_4:39767029-39767048 | Msa0327810:three_prime_UTR | 25.0% |
| !! | ATTAGTCTAACTTTCTGATA+AGG | - | chr2_4:39767406-39767425 | Msa0327810:intron | 25.0% |
| ! | TTAGTCTAACTTTCTGATAA+GGG | - | chr2_4:39767407-39767426 | Msa0327810:intron | 25.0% |
| ! | CACATAGTCTATATTCAATA+TGG | - | chr2_4:39767750-39767769 | Msa0327810:CDS | 25.0% |
| !! | TGCAATTTTTCACATTGAAA+AGG | - | chr2_4:39767840-39767859 | Msa0327810:intron | 25.0% |
| !!! | GAAAAAACAGTTCTAAAGTT+TGG | + | chr2_4:39768116-39768135 | None:intergenic | 25.0% |
| !!! | CTTTAAAATATAGGTTGAGA+TGG | - | chr2_4:39768202-39768221 | Msa0327810:intron | 25.0% |
| ! | AATTGATATTGAAGAGAACT+GGG | - | chr2_4:39768349-39768368 | Msa0327810:intron | 25.0% |
| !!! | ACTTTGAGTATTGAAGTTTT+AGG | + | chr2_4:39768407-39768426 | None:intergenic | 25.0% |
| ! | ATTCAATATAAGCTACAAAG+TGG | - | chr2_4:39768453-39768472 | Msa0327810:intron | 25.0% |
| !!! | ACACATTTTTGGTAAAACAA+AGG | + | chr2_4:39768626-39768645 | None:intergenic | 25.0% |
| ! | ACACCTTTAATCATAAGTTT+CGG | - | chr2_4:39768775-39768794 | Msa0327810:intron | 25.0% |
| ! | GTCAATAAAATTGTATTCAC+AGG | + | chr2_4:39768975-39768994 | None:intergenic | 25.0% |
| ! | GGGAAAAAGAAAACAAAATA+AGG | + | chr2_4:39769015-39769034 | None:intergenic | 25.0% |
| !! | AATCCAGATCTAAAATGATA+GGG | + | chr2_4:39769035-39769054 | None:intergenic | 25.0% |
| !! | AAATCCAGATCTAAAATGAT+AGG | + | chr2_4:39769036-39769055 | None:intergenic | 25.0% |
| !!! | GTTCTTTTTATTTTCAGATG+GGG | - | chr2_4:39769276-39769295 | Msa0327810:CDS | 25.0% |
| !! | TGTTTAAGATTAGCTACTTT+GGG | + | chr2_4:39769438-39769457 | None:intergenic | 25.0% |
| !! | TTGTTTAAGATTAGCTACTT+TGG | + | chr2_4:39769439-39769458 | None:intergenic | 25.0% |
| ! | TACGAATTATTATAACAGGT+CGG | - | chr2_4:39769785-39769804 | Msa0327810:intron | 25.0% |
| ! | AAAACAAGAAAGTTATCATG+AGG | + | chr2_4:39770166-39770185 | None:intergenic | 25.0% |
| ! | TTATATTAACCAACCTCAAT+TGG | + | chr2_4:39770385-39770404 | None:intergenic | 25.0% |
| !! | ATGTCTTACTTGATTGTTTT+AGG | - | chr2_4:39770406-39770425 | Msa0327810:intron | 25.0% |
| !! | TTGATTAATTCTCTCTTTTC+AGG | - | chr2_4:39770457-39770476 | Msa0327810:intron | 25.0% |
| ! | TGCTTAGTTATCAATTCTTA+TGG | - | chr2_4:39770544-39770563 | Msa0327810:CDS | 25.0% |
| !! | GAACATTTTAAGAGAATCTC+TGG | - | chr2_4:39767096-39767115 | Msa0327810:CDS | 30.0% |
| TGTATACATTTGCACATCAT+AGG | + | chr2_4:39767288-39767307 | None:intergenic | 30.0% | |
| AGCTACAAAGATCCATTTAA+GGG | + | chr2_4:39767380-39767399 | None:intergenic | 30.0% | |
| TAGCTACAAAGATCCATTTA+AGG | + | chr2_4:39767381-39767400 | None:intergenic | 30.0% | |
| CTAGCTAGAATCAATTCTAA+TGG | + | chr2_4:39767583-39767602 | None:intergenic | 30.0% | |
| GAGCGTAAAATTTATGTTTG+CGG | + | chr2_4:39767627-39767646 | None:intergenic | 30.0% | |
| GAATATAGACTATGTGTGTT+TGG | + | chr2_4:39767746-39767765 | None:intergenic | 30.0% | |
| !! | AAAACAGTTCTAAAGTTTGG+AGG | + | chr2_4:39768113-39768132 | None:intergenic | 30.0% |
| ! | AGTATAAGCTTTTCTGAATG+TGG | - | chr2_4:39768323-39768342 | Msa0327810:intron | 30.0% |
| GAATTGATATTGAAGAGAAC+TGG | - | chr2_4:39768348-39768367 | Msa0327810:intron | 30.0% | |
| AAGACTGTATTTATTCCAAC+AGG | - | chr2_4:39768495-39768514 | Msa0327810:CDS | 30.0% | |
| AGACTGTATTTATTCCAACA+GGG | - | chr2_4:39768496-39768515 | Msa0327810:CDS | 30.0% | |
| AAAGTGAATATACCTCTAAG+GGG | + | chr2_4:39768566-39768585 | None:intergenic | 30.0% | |
| CAAAGTGAATATACCTCTAA+GGG | + | chr2_4:39768567-39768586 | None:intergenic | 30.0% | |
| TTCTGTGAACATGTTAACTA+TGG | - | chr2_4:39768598-39768617 | Msa0327810:intron | 30.0% | |
| GAAACTTATGATTAAAGGTG+TGG | + | chr2_4:39768776-39768795 | None:intergenic | 30.0% | |
| ACACCGAAACTTATGATTAA+AGG | + | chr2_4:39768781-39768800 | None:intergenic | 30.0% | |
| ! | AGAACTTGAAGATTTTCTCA+AGG | - | chr2_4:39768890-39768909 | Msa0327810:intron | 30.0% |
| ! | GCACATTCATGTTTTGTAAA+TGG | + | chr2_4:39768953-39768972 | None:intergenic | 30.0% |
| ! | TTTCCCTATCATTTTAGATC+TGG | - | chr2_4:39769029-39769048 | Msa0327810:intron | 30.0% |
| AACAATTAATATTCCTGGCA+GGG | + | chr2_4:39769175-39769194 | None:intergenic | 30.0% | |
| TAACAATTAATATTCCTGGC+AGG | + | chr2_4:39769176-39769195 | None:intergenic | 30.0% | |
| CACAGTTGATTAATTCTAAG+TGG | + | chr2_4:39769230-39769249 | None:intergenic | 30.0% | |
| TAATCCATGAATGAAAGACT+CGG | + | chr2_4:39769346-39769365 | None:intergenic | 30.0% | |
| ! | GTTTAAGATTAGCTACTTTG+GGG | + | chr2_4:39769437-39769456 | None:intergenic | 30.0% |
| TATTACTACTAGACTTATCG+CGG | - | chr2_4:39769525-39769544 | Msa0327810:intron | 30.0% | |
| !! | AAGCGCATCTTTAAAATTCA+CGG | - | chr2_4:39769611-39769630 | Msa0327810:CDS | 30.0% |
| TCATGAGGTAGTATGTTATA+AGG | + | chr2_4:39770151-39770170 | None:intergenic | 30.0% | |
| TTGTTGATGTATTACTAACC+AGG | - | chr2_4:39770252-39770271 | Msa0327810:intron | 30.0% | |
| !!! | ATTCTCTCTTTTCAGGTATA+TGG | - | chr2_4:39770464-39770483 | Msa0327810:intron | 30.0% |
| ATTTCTCAATTCTGGTAGAT+TGG | + | chr2_4:39770618-39770637 | None:intergenic | 30.0% | |
| TCTACCAGAATTGAGAAATT+TGG | - | chr2_4:39770619-39770638 | Msa0327810:intron | 30.0% | |
| GTTTGTATCATGTAGAATTC+TGG | - | chr2_4:39770699-39770718 | Msa0327810:intron | 30.0% | |
| !! | TATTGTTTTGTGGAAAACTC+TGG | - | chr2_4:39770897-39770916 | Msa0327810:five_prime_UTR | 30.0% |
| ! | TGAATGAGAAGGTGTGATAT+TGG | + | chr2_4:39766789-39766808 | None:intergenic | 35.0% |
| CCAGATCAAATCAGCTTAAA+GGG | + | chr2_4:39766970-39766989 | None:intergenic | 35.0% | |
| !! | CCTTTAAGCTGATTTGATCT+GGG | - | chr2_4:39766968-39766987 | Msa0327810:three_prime_UTR | 35.0% |
| ! | TCAGAGAGTATGATTCTAAG+AGG | - | chr2_4:39767064-39767083 | Msa0327810:exon | 35.0% |
| ! | TGATTCTAAGAGGTTGTTGA+AGG | - | chr2_4:39767074-39767093 | Msa0327810:CDS | 35.0% |
| !! | TTTTAAGAGAATCTCTGGAC+AGG | - | chr2_4:39767101-39767120 | Msa0327810:CDS | 35.0% |
| CTTACTTGTGCAGACTTAAT+TGG | + | chr2_4:39767132-39767151 | None:intergenic | 35.0% | |
| TACATTTGCACATCATAGGA+TGG | + | chr2_4:39767284-39767303 | None:intergenic | 35.0% | |
| AAGTTACCAATTTGAGCATG+TGG | - | chr2_4:39767307-39767326 | Msa0327810:CDS | 35.0% | |
| GATTCAACTATGTGCATGTT+TGG | - | chr2_4:39767489-39767508 | Msa0327810:CDS | 35.0% | |
| !! | GCATGTTTGGTTTCACTTTT+TGG | - | chr2_4:39767502-39767521 | Msa0327810:CDS | 35.0% |
| ! | ATTGATTCTAGCTAGAGACT+AGG | - | chr2_4:39767588-39767607 | Msa0327810:intron | 35.0% |
| !! | ACTATGTGTGTTTGGTTCTA+CGG | + | chr2_4:39767738-39767757 | None:intergenic | 35.0% |
| ! | TATGATGATGTATGCAACAG+TGG | - | chr2_4:39767805-39767824 | Msa0327810:intron | 35.0% |
| ! | CTCATTGATATCGGTTGATT+CGG | + | chr2_4:39767922-39767941 | None:intergenic | 35.0% |
| CTCTACTAGCTCATTGATAT+CGG | + | chr2_4:39767931-39767950 | None:intergenic | 35.0% | |
| TATCAATGAGCTAGTAGAGA+AGG | - | chr2_4:39767932-39767951 | Msa0327810:CDS | 35.0% | |
| AATTTGGAAGATGAAAGCCA+TGG | + | chr2_4:39767960-39767979 | None:intergenic | 35.0% | |
| ATGGCTTTCATCTTCCAAAT+TGG | - | chr2_4:39767959-39767978 | Msa0327810:CDS | 35.0% | |
| ! | GCTTTTGTAAAAGAACGTCT+AGG | - | chr2_4:39768062-39768081 | Msa0327810:intron | 35.0% |
| AAAAGAACGTCTAGGAAAAG+AGG | - | chr2_4:39768070-39768089 | Msa0327810:intron | 35.0% | |
| ! | AAAATATAGGTTGAGATGGG+TGG | - | chr2_4:39768206-39768225 | Msa0327810:intron | 35.0% |
| CTATTACGACCTTCATTGTT+GGG | - | chr2_4:39768240-39768259 | Msa0327810:intron | 35.0% | |
| GGTAGAACTCTTCATTATGT+GGG | + | chr2_4:39768274-39768293 | None:intergenic | 35.0% | |
| AGGTAGAACTCTTCATTATG+TGG | + | chr2_4:39768275-39768294 | None:intergenic | 35.0% | |
| ! | GTCTATCTGAGACAATGTTA+AGG | + | chr2_4:39768295-39768314 | None:intergenic | 35.0% |
| AACATTGTCTCAGATAGACT+AGG | - | chr2_4:39768296-39768315 | Msa0327810:CDS | 35.0% | |
| ACATTGTCTCAGATAGACTA+GGG | - | chr2_4:39768297-39768316 | Msa0327810:CDS | 35.0% | |
| ! | ATAAGCTTTTCTGAATGTGG+AGG | - | chr2_4:39768326-39768345 | Msa0327810:intron | 35.0% |
| TATTGAAGAGAACTGGGATA+AGG | - | chr2_4:39768355-39768374 | Msa0327810:intron | 35.0% | |
| !! | AAGTGGTTTGTTCGTATTTC+AGG | - | chr2_4:39768470-39768489 | Msa0327810:CDS | 35.0% |
| GACTGTATTTATTCCAACAG+GGG | - | chr2_4:39768497-39768516 | Msa0327810:CDS | 35.0% | |
| GCAAAGTGAATATACCTCTA+AGG | + | chr2_4:39768568-39768587 | None:intergenic | 35.0% | |
| ! | AGAAAGCTGGAACACATTTT+TGG | + | chr2_4:39768637-39768656 | None:intergenic | 35.0% |
| ! | TCCTTCATGCTTTTAGATCA+AGG | - | chr2_4:39768866-39768885 | Msa0327810:intron | 35.0% |
| ! | CCTTCATGCTTTTAGATCAA+GGG | - | chr2_4:39768867-39768886 | Msa0327810:intron | 35.0% |
| ACAATTAATATTCCTGGCAG+GGG | + | chr2_4:39769174-39769193 | None:intergenic | 35.0% | |
| ATCGAATTTCCTTTGCCATT+TGG | - | chr2_4:39769303-39769322 | Msa0327810:CDS | 35.0% | |
| ! | AATTTCCTTTGCCATTTGGA+AGG | - | chr2_4:39769307-39769326 | Msa0327810:CDS | 35.0% |
| ! | ATTTCCTTTGCCATTTGGAA+GGG | - | chr2_4:39769308-39769327 | Msa0327810:CDS | 35.0% |
| !! | CATTCATGGATTAGACGAAA+AGG | - | chr2_4:39769353-39769372 | Msa0327810:CDS | 35.0% |
| !! | ATTTTAAAGATGCGCTTGTC+TGG | + | chr2_4:39769608-39769627 | None:intergenic | 35.0% |
| GAGTGTAATATACGCTGATA+CGG | - | chr2_4:39769683-39769702 | Msa0327810:CDS | 35.0% | |
| TCTGCATAATTTCCAAGTTC+AGG | + | chr2_4:39769827-39769846 | None:intergenic | 35.0% | |
| GGAAATTATGCAGAATACAG+TGG | - | chr2_4:39769833-39769852 | Msa0327810:intron | 35.0% | |
| CTACATTCAGTGGCATAATT+CGG | - | chr2_4:39770100-39770119 | Msa0327810:intron | 35.0% | |
| TACATTCAGTGGCATAATTC+GGG | - | chr2_4:39770101-39770120 | Msa0327810:intron | 35.0% | |
| !!! | CTTCTTTTAGCTTTTGTTCC+TGG | + | chr2_4:39770273-39770292 | None:intergenic | 35.0% |
| !! | TCATTTTTGCTAGACCTCTT+TGG | + | chr2_4:39770336-39770355 | None:intergenic | 35.0% |
| AAAGAGGTCTAGCAAAAATG+AGG | - | chr2_4:39770335-39770354 | Msa0327810:intron | 35.0% | |
| AAGAGGTCTAGCAAAAATGA+GGG | - | chr2_4:39770336-39770355 | Msa0327810:intron | 35.0% | |
| TGAAATTGGCATTCCAATTG+AGG | - | chr2_4:39770369-39770388 | Msa0327810:intron | 35.0% | |
| CTCACCAAATTTCTCAATTC+TGG | + | chr2_4:39770626-39770645 | None:intergenic | 35.0% | |
| ! | AAGGTGTGATATTGGTTGGT+GGG | + | chr2_4:39766781-39766800 | None:intergenic | 40.0% |
| ! | TGAGAAGGTGTGATATTGGT+TGG | + | chr2_4:39766785-39766804 | None:intergenic | 40.0% |
| AGATCCAATGGTGAATGAGA+AGG | + | chr2_4:39766800-39766819 | None:intergenic | 40.0% | |
| !! | CCCTTTAAGCTGATTTGATC+TGG | - | chr2_4:39766967-39766986 | Msa0327810:three_prime_UTR | 40.0% |
| CCCAGATCAAATCAGCTTAA+AGG | + | chr2_4:39766971-39766990 | None:intergenic | 40.0% | |
| TCTAGACCACATGCTCAAAT+TGG | + | chr2_4:39767316-39767335 | None:intergenic | 40.0% | |
| ! | TTTTCCACACTCACTAGTCA+AGG | + | chr2_4:39767346-39767365 | None:intergenic | 40.0% |
| AACATCGAGAGTCCCTTAAA+TGG | - | chr2_4:39767365-39767384 | Msa0327810:intron | 40.0% | |
| GTCAGGTTTCACAACCAATT+TGG | + | chr2_4:39767976-39767995 | None:intergenic | 40.0% | |
| GTGAAACCTGACATGCTATT+TGG | - | chr2_4:39767984-39768003 | Msa0327810:CDS | 40.0% | |
| ! | CGTTTTCCAAATAGCATGTC+AGG | + | chr2_4:39767993-39768012 | None:intergenic | 40.0% |
| ! | GACATGCTATTTGGAAAACG+TGG | - | chr2_4:39767993-39768012 | Msa0327810:CDS | 40.0% |
| TTTGGAAAACGTGGCAAAAG+TGG | - | chr2_4:39768002-39768021 | Msa0327810:intron | 40.0% | |
| AAAACGTGGCAAAAGTGGTT+TGG | - | chr2_4:39768007-39768026 | Msa0327810:intron | 40.0% | |
| !! | TTCTAAAGTTTGGAGGACAG+AGG | + | chr2_4:39768106-39768125 | None:intergenic | 40.0% |
| CCAACAATGAAGGTCGTAAT+AGG | + | chr2_4:39768242-39768261 | None:intergenic | 40.0% | |
| CCTATTACGACCTTCATTGT+TGG | - | chr2_4:39768239-39768258 | Msa0327810:intron | 40.0% | |
| TCTTCATTATGTGGGACGAA+AGG | + | chr2_4:39768266-39768285 | None:intergenic | 40.0% | |
| ! | TGAATATACCTCTAAGGGGA+GGG | + | chr2_4:39768562-39768581 | None:intergenic | 40.0% |
| TGATAACCAACACAGAAAGC+TGG | + | chr2_4:39768650-39768669 | None:intergenic | 40.0% | |
| ! | GTAACTACATGTGTCGTTGT+CGG | - | chr2_4:39768743-39768762 | Msa0327810:intron | 40.0% |
| ! | CTTATGATTAAAGGTGTGGC+CGG | + | chr2_4:39768772-39768791 | None:intergenic | 40.0% |
| ! | CCCTTGATCTAAAAGCATGA+AGG | + | chr2_4:39768870-39768889 | None:intergenic | 40.0% |
| CCTCTCATATCCAAAGGATA+AGG | + | chr2_4:39769102-39769121 | None:intergenic | 40.0% | |
| CCTTATCCTTTGGATATGAG+AGG | - | chr2_4:39769099-39769118 | Msa0327810:CDS | 40.0% | |
| ATAACCCTTCCAAATGGCAA+AGG | + | chr2_4:39769315-39769334 | None:intergenic | 40.0% | |
| CAGCTACCATAGTCCAAATT+CGG | + | chr2_4:39769653-39769672 | None:intergenic | 40.0% | |
| TTATAACAGGTCGGAGATCT+TGG | - | chr2_4:39769794-39769813 | Msa0327810:intron | 40.0% | |
| GCACTGCAAAGAGATTATCA+TGG | + | chr2_4:39770004-39770023 | None:intergenic | 40.0% | |
| ACTGAATGTAGCTGCAACAT+CGG | + | chr2_4:39770091-39770110 | None:intergenic | 40.0% | |
| TCAATCACAAACGGGAACTA+AGG | + | chr2_4:39770196-39770215 | None:intergenic | 40.0% | |
| CAAACATGCACATCTATGTG+AGG | - | chr2_4:39770293-39770312 | Msa0327810:intron | 40.0% | |
| !! | TAGCAAAAATGAGGGCACTT+GGG | - | chr2_4:39770344-39770363 | Msa0327810:intron | 40.0% |
| ATTGGCATTCCAATTGAGGT+TGG | - | chr2_4:39770373-39770392 | Msa0327810:intron | 40.0% | |
| AATGACTGGCATATGCAAAC+AGG | - | chr2_4:39770499-39770518 | Msa0327810:CDS | 40.0% | |
| ! | ATTTGGTGAGAGATAGAGCA+TGG | - | chr2_4:39770636-39770655 | Msa0327810:intron | 40.0% |
| ! | GAAGGTGTGATATTGGTTGG+TGG | + | chr2_4:39766782-39766801 | None:intergenic | 45.0% |
| CACACCTTCTCATTCACCAT+TGG | - | chr2_4:39766793-39766812 | Msa0327810:three_prime_UTR | 45.0% | |
| AGAGGGATAGGTAGATCCAA+TGG | + | chr2_4:39766812-39766831 | None:intergenic | 45.0% | |
| CTATCCCTCTCTCTCTCTAA+CGG | - | chr2_4:39766822-39766841 | Msa0327810:three_prime_UTR | 45.0% | |
| ACTACCGTTAGAGAGAGAGA+GGG | + | chr2_4:39766829-39766848 | None:intergenic | 45.0% | |
| AACTACCGTTAGAGAGAGAG+AGG | + | chr2_4:39766830-39766849 | None:intergenic | 45.0% | |
| CTGATCTTCTTACGTGCCAT+TGG | + | chr2_4:39767048-39767067 | None:intergenic | 45.0% | |
| AGCTAGTAGAGAAGGAACCA+TGG | - | chr2_4:39767940-39767959 | Msa0327810:CDS | 45.0% | |
| !! | TGGTTTGGTTGCCTTGAATC+TGG | - | chr2_4:39768022-39768041 | Msa0327810:intron | 45.0% |
| GATGTAAGAGATTCCCCTGT+TGG | + | chr2_4:39768513-39768532 | None:intergenic | 45.0% | |
| ! | GTGAATATACCTCTAAGGGG+AGG | + | chr2_4:39768563-39768582 | None:intergenic | 45.0% |
| TGTGTTCCAGCTTTCTGTGT+TGG | - | chr2_4:39768641-39768660 | Msa0327810:intron | 45.0% | |
| TGATTGGTGCAACCATCTCA+GGG | + | chr2_4:39768696-39768715 | None:intergenic | 45.0% | |
| TTGATTGGTGCAACCATCTC+AGG | + | chr2_4:39768697-39768716 | None:intergenic | 45.0% | |
| AATCCTTTCGCTCTTGTCGA+TGG | - | chr2_4:39769072-39769091 | Msa0327810:CDS | 45.0% | |
| TTTCCATCGACAAGAGCGAA+AGG | + | chr2_4:39769078-39769097 | None:intergenic | 45.0% | |
| ! | CGATGGAAAGCCTTATCCTT+TGG | - | chr2_4:39769089-39769108 | Msa0327810:CDS | 45.0% |
| AGCTCTCCTCTCATATCCAA+AGG | + | chr2_4:39769108-39769127 | None:intergenic | 45.0% | |
| GGACTCATAACCCTTCCAAA+TGG | + | chr2_4:39769321-39769340 | None:intergenic | 45.0% | |
| ! | CCATGAATGAAAGACTCGGT+AGG | + | chr2_4:39769342-39769361 | None:intergenic | 45.0% |
| CCTACCGAGTCTTTCATTCA+TGG | - | chr2_4:39769339-39769358 | Msa0327810:CDS | 45.0% | |
| ! | ATTCACGGTGTTAAACCCAG+TGG | - | chr2_4:39769626-39769645 | Msa0327810:CDS | 45.0% |
| ! | TTCACGGTGTTAAACCCAGT+GGG | - | chr2_4:39769627-39769646 | Msa0327810:CDS | 45.0% |
| CGAATTTGGACTATGGTAGC+TGG | - | chr2_4:39769651-39769670 | Msa0327810:CDS | 45.0% | |
| ATTTGGACTATGGTAGCTGG+AGG | - | chr2_4:39769654-39769673 | Msa0327810:CDS | 45.0% | |
| CTTGGTTATGCTCCTGAACT+TGG | - | chr2_4:39769812-39769831 | Msa0327810:intron | 45.0% | |
| GATGTTGCAGCTACATTCAG+TGG | - | chr2_4:39770090-39770109 | Msa0327810:intron | 45.0% | |
| ATGCACATCTATGTGAGGAG+AGG | - | chr2_4:39770298-39770317 | Msa0327810:intron | 45.0% | |
| ! | GCTAGACCTCTTTGGTAGTT+GGG | + | chr2_4:39770328-39770347 | None:intergenic | 45.0% |
| ! | TGCTAGACCTCTTTGGTAGT+TGG | + | chr2_4:39770329-39770348 | None:intergenic | 45.0% |
| !! | CTAGCAAAAATGAGGGCACT+TGG | - | chr2_4:39770343-39770362 | Msa0327810:intron | 45.0% |
| !! | AGCAAAAATGAGGGCACTTG+GGG | - | chr2_4:39770345-39770364 | Msa0327810:intron | 45.0% |
| ! | ATGCCAGTCATTGTTGCTTC+AGG | + | chr2_4:39770491-39770510 | None:intergenic | 45.0% |
| TGTGGAAAACTCTGGACTCT+TGG | - | chr2_4:39770905-39770924 | Msa0327810:five_prime_UTR | 45.0% | |
| GTGGAAAACTCTGGACTCTT+GGG | - | chr2_4:39770906-39770925 | Msa0327810:five_prime_UTR | 45.0% | |
| !! | TATTTAATTATAAATGATTA+TGG | - | chr2_4:39769251-39769270 | Msa0327810:CDS | 5.0% |
| !!! | TTTTCATAATAAAAATTTAT+AGG | + | chr2_4:39769552-39769571 | None:intergenic | 5.0% |
| !! | AAAAATTTAATAATCTAATA+AGG | - | chr2_4:39770665-39770684 | Msa0327810:intron | 5.0% |
| CGTTAGAGAGAGAGAGGGAT+AGG | + | chr2_4:39766824-39766843 | None:intergenic | 50.0% | |
| CGATCCTTGACTAGTGAGTG+TGG | - | chr2_4:39767339-39767358 | Msa0327810:intron | 50.0% | |
| GGTTGCCTTGAATCTGGATG+TGG | - | chr2_4:39768028-39768047 | Msa0327810:intron | 50.0% | |
| TCCAGCCACATCCAGATTCA+AGG | + | chr2_4:39768036-39768055 | None:intergenic | 50.0% | |
| GTTGAGATGGGTGGATGCAA+AGG | - | chr2_4:39768215-39768234 | Msa0327810:intron | 50.0% | |
| GACGAAAGGCCCAACAATGA+AGG | + | chr2_4:39768252-39768271 | None:intergenic | 50.0% | |
| AAGGGGAGGGTAGCAATAAG+TGG | + | chr2_4:39768549-39768568 | None:intergenic | 50.0% | |
| TATTGCTACCCTCCCCTTAG+AGG | - | chr2_4:39768551-39768570 | Msa0327810:CDS | 50.0% | |
| ! | AAGTGAGTTTTTCCCCTGCC+AGG | - | chr2_4:39769159-39769178 | Msa0327810:intron | 50.0% |
| AGATGCGCTTGTCTGGTAGA+AGG | + | chr2_4:39769601-39769620 | None:intergenic | 50.0% | |
| TAAACCCAGTGGGCCGAATT+TGG | - | chr2_4:39769637-39769656 | Msa0327810:CDS | 50.0% | |
| TAGTCCAAATTCGGCCCACT+GGG | + | chr2_4:39769644-39769663 | None:intergenic | 50.0% | |
| ATAGTCCAAATTCGGCCCAC+TGG | + | chr2_4:39769645-39769664 | None:intergenic | 50.0% | |
| AGTGGGCCGAATTTGGACTA+TGG | - | chr2_4:39769644-39769663 | Msa0327810:CDS | 50.0% | |
| AGAATACAGTGGTGCACCCA+AGG | - | chr2_4:39769844-39769863 | Msa0327810:intron | 50.0% | |
| CAAAAGCGAGCCCTTGTGAT+CGG | - | chr2_4:39770045-39770064 | Msa0327810:intron | 50.0% | |
| TATTCCCCCTCCGATCACAA+GGG | + | chr2_4:39770058-39770077 | None:intergenic | 50.0% | |
| ! | TGGCATAATTCGGGCTCTGA+AGG | - | chr2_4:39770110-39770129 | Msa0327810:intron | 50.0% |
| !! | AATTCGGGCTCTGAAGGAGA+AGG | - | chr2_4:39770116-39770135 | Msa0327810:intron | 50.0% |
| CACATCTATGTGAGGAGAGG+AGG | - | chr2_4:39770301-39770320 | Msa0327810:intron | 50.0% | |
| ! | AGGGCACTTGGGGATGAAAT+TGG | - | chr2_4:39770355-39770374 | Msa0327810:intron | 50.0% |
| GGACCTGAAGCAACAATGAC+TGG | - | chr2_4:39770485-39770504 | Msa0327810:CDS | 50.0% | |
| AAGCAGAAGCAGTGATGCAC+TGG | + | chr2_4:39770529-39770548 | None:intergenic | 50.0% | |
| GCCTTGAATCTGGATGTGGC+TGG | - | chr2_4:39768032-39768051 | Msa0327810:intron | 55.0% | |
| ACACATGCACGACCCTGAGA+TGG | - | chr2_4:39768681-39768700 | Msa0327810:intron | 55.0% | |
| ! | CATGTGTCGTTGTCGGACAC+CGG | - | chr2_4:39768750-39768769 | Msa0327810:intron | 55.0% |
| TGGACTATGGTAGCTGGAGG+AGG | - | chr2_4:39769657-39769676 | Msa0327810:CDS | 55.0% | |
| TACAGTGGTGCACCCAAGGA+AGG | - | chr2_4:39769848-39769867 | Msa0327810:intron | 55.0% | |
| TGCAAGACCTCGCCTTCCTT+GGG | + | chr2_4:39769863-39769882 | None:intergenic | 55.0% | |
| TGCGCAACTGCGAATCCTGA+TGG | - | chr2_4:39770021-39770040 | Msa0327810:intron | 55.0% | |
| !! | AGGGCTCGCTTTTGTCCATC+AGG | + | chr2_4:39770039-39770058 | None:intergenic | 55.0% |
| CTATTCCCCCTCCGATCACA+AGG | + | chr2_4:39770059-39770078 | None:intergenic | 55.0% | |
| GGAGGTCCCAACTACCAAAG+AGG | - | chr2_4:39770319-39770338 | Msa0327810:intron | 55.0% | |
| CTGCAAGACCTCGCCTTCCT+TGG | + | chr2_4:39769864-39769883 | None:intergenic | 60.0% | |
| AAGCGAGCCCTTGTGATCGG+AGG | - | chr2_4:39770048-39770067 | Msa0327810:intron | 60.0% | |
| AGCGAGCCCTTGTGATCGGA+GGG | - | chr2_4:39770049-39770068 | Msa0327810:intron | 60.0% | |
| TGGTGCACCCAAGGAAGGCG+AGG | - | chr2_4:39769853-39769872 | Msa0327810:intron | 65.0% | |
| GCGAGCCCTTGTGATCGGAG+GGG | - | chr2_4:39770050-39770069 | Msa0327810:intron | 65.0% | |
| CGAGCCCTTGTGATCGGAGG+GGG | - | chr2_4:39770051-39770070 | Msa0327810:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 39766677 | 39770947 | 39766677 | ID=Msa0327810;Name=Msa0327810 |
| chr2_4 | mRNA | 39766677 | 39770947 | 39766677 | ID=Msa0327810-mRNA-1;Parent=Msa0327810;Name=Msa0327810-mRNA-1;_AED=0.09;_eAED=0.09;_QI=202|1|1|1|0.91|0.84|13|397|423 |
| chr2_4 | exon | 39766677 | 39767145 | 39766677 | ID=Msa0327810-mRNA-1:exon:12018;Parent=Msa0327810-mRNA-1 |
| chr2_4 | exon | 39767234 | 39767350 | 39767234 | ID=Msa0327810-mRNA-1:exon:12017;Parent=Msa0327810-mRNA-1 |
| chr2_4 | exon | 39767487 | 39767603 | 39767487 | ID=Msa0327810-mRNA-1:exon:12016;Parent=Msa0327810-mRNA-1 |
| chr2_4 | exon | 39767720 | 39767821 | 39767720 | ID=Msa0327810-mRNA-1:exon:12015;Parent=Msa0327810-mRNA-1 |
| chr2_4 | exon | 39767920 | 39768015 | 39767920 | ID=Msa0327810-mRNA-1:exon:12014;Parent=Msa0327810-mRNA-1 |
| chr2_4 | exon | 39768250 | 39768331 | 39768250 | ID=Msa0327810-mRNA-1:exon:12013;Parent=Msa0327810-mRNA-1 |
| chr2_4 | exon | 39768464 | 39768578 | 39768464 | ID=Msa0327810-mRNA-1:exon:12012;Parent=Msa0327810-mRNA-1 |
| chr2_4 | exon | 39768691 | 39768742 | 39768691 | ID=Msa0327810-mRNA-1:exon:12011;Parent=Msa0327810-mRNA-1 |
| chr2_4 | exon | 39769052 | 39769132 | 39769052 | ID=Msa0327810-mRNA-1:exon:12010;Parent=Msa0327810-mRNA-1 |
| chr2_4 | exon | 39769248 | 39769409 | 39769248 | ID=Msa0327810-mRNA-1:exon:12009;Parent=Msa0327810-mRNA-1 |
| chr2_4 | exon | 39769533 | 39769709 | 39769533 | ID=Msa0327810-mRNA-1:exon:12008;Parent=Msa0327810-mRNA-1 |
| chr2_4 | exon | 39770478 | 39770611 | 39770478 | ID=Msa0327810-mRNA-1:exon:12007;Parent=Msa0327810-mRNA-1 |
| chr2_4 | exon | 39770781 | 39770947 | 39770781 | ID=Msa0327810-mRNA-1:exon:12006;Parent=Msa0327810-mRNA-1 |
| chr2_4 | five_prime_UTR | 39770781 | 39770947 | 39770781 | ID=Msa0327810-mRNA-1:five_prime_utr;Parent=Msa0327810-mRNA-1 |
| chr2_4 | five_prime_UTR | 39770577 | 39770611 | 39770577 | ID=Msa0327810-mRNA-1:five_prime_utr;Parent=Msa0327810-mRNA-1 |
| chr2_4 | CDS | 39770478 | 39770576 | 39770478 | ID=Msa0327810-mRNA-1:cds;Parent=Msa0327810-mRNA-1 |
| chr2_4 | CDS | 39769533 | 39769709 | 39769533 | ID=Msa0327810-mRNA-1:cds;Parent=Msa0327810-mRNA-1 |
| chr2_4 | CDS | 39769248 | 39769409 | 39769248 | ID=Msa0327810-mRNA-1:cds;Parent=Msa0327810-mRNA-1 |
| chr2_4 | CDS | 39769052 | 39769132 | 39769052 | ID=Msa0327810-mRNA-1:cds;Parent=Msa0327810-mRNA-1 |
| chr2_4 | CDS | 39768691 | 39768742 | 39768691 | ID=Msa0327810-mRNA-1:cds;Parent=Msa0327810-mRNA-1 |
| chr2_4 | CDS | 39768464 | 39768578 | 39768464 | ID=Msa0327810-mRNA-1:cds;Parent=Msa0327810-mRNA-1 |
| chr2_4 | CDS | 39768250 | 39768331 | 39768250 | ID=Msa0327810-mRNA-1:cds;Parent=Msa0327810-mRNA-1 |
| chr2_4 | CDS | 39767920 | 39768015 | 39767920 | ID=Msa0327810-mRNA-1:cds;Parent=Msa0327810-mRNA-1 |
| chr2_4 | CDS | 39767720 | 39767821 | 39767720 | ID=Msa0327810-mRNA-1:cds;Parent=Msa0327810-mRNA-1 |
| chr2_4 | CDS | 39767487 | 39767603 | 39767487 | ID=Msa0327810-mRNA-1:cds;Parent=Msa0327810-mRNA-1 |
| chr2_4 | CDS | 39767234 | 39767350 | 39767234 | ID=Msa0327810-mRNA-1:cds;Parent=Msa0327810-mRNA-1 |
| chr2_4 | CDS | 39767074 | 39767145 | 39767074 | ID=Msa0327810-mRNA-1:cds;Parent=Msa0327810-mRNA-1 |
| chr2_4 | three_prime_UTR | 39766677 | 39767073 | 39766677 | ID=Msa0327810-mRNA-1:three_prime_utr;Parent=Msa0327810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
