Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0212300 | XP_003595886.1 | 98.818 | 423 | 5 | 0 | 1 | 423 | 1 | 423 | 0.0 | 860 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0212300 | sp|O22718|ACLA2_ARATH | 87.943 | 423 | 51 | 0 | 1 | 423 | 1 | 423 | 0.0 | 776 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0212300 | G7IT44 | 98.818 | 423 | 5 | 0 | 1 | 423 | 1 | 423 | 0.0 | 860 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0212300 | Msa0251210 | 0.911176 | 8.171953e-83 | -8.615850e-47 |
| Msa0212300 | Msa0327810 | 0.882790 | 7.751798e-71 | -8.615850e-47 |
| Msa0212300 | Msa0476840 | 0.810595 | 1.066034e-50 | -8.615850e-47 |
| Msa0212300 | Msa0753920 | 0.830776 | 2.427832e-55 | -8.615850e-47 |
| Msa0212300 | Msa0807010 | 0.812835 | 3.471796e-51 | -8.615850e-47 |
| Msa0212300 | Msa0829130 | 0.810994 | 8.737568e-51 | -8.615850e-47 |
| Msa0212300 | Msa0832940 | 0.811021 | 8.622027e-51 | -8.615850e-47 |
| Msa0212300 | Msa1132990 | 0.803081 | 4.131935e-49 | -8.615850e-47 |
| Msa0212300 | Msa1251740 | 0.806408 | 8.348088e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0212300 | MtrunA17_Chr2g0309471 | 98.818 | 423 | 5 | 0 | 1 | 423 | 1 | 423 | 0.0 | 860 |
| Msa0212300 | MtrunA17_Chr5g0413331 | 91.253 | 423 | 37 | 0 | 1 | 423 | 1 | 423 | 0.0 | 800 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0212300 | AT1G60810.2 | 87.943 | 423 | 51 | 0 | 1 | 423 | 1 | 423 | 0.0 | 776 |
| Msa0212300 | AT1G60810.1 | 87.943 | 423 | 51 | 0 | 1 | 423 | 1 | 423 | 0.0 | 776 |
| Msa0212300 | AT1G10670.4 | 87.234 | 423 | 54 | 0 | 1 | 423 | 1 | 423 | 0.0 | 774 |
| Msa0212300 | AT1G10670.2 | 87.234 | 423 | 54 | 0 | 1 | 423 | 1 | 423 | 0.0 | 774 |
| Msa0212300 | AT1G10670.1 | 87.234 | 423 | 54 | 0 | 1 | 423 | 1 | 423 | 0.0 | 774 |
| Msa0212300 | AT1G10670.3 | 83.296 | 443 | 54 | 1 | 1 | 423 | 1 | 443 | 0.0 | 761 |
| Msa0212300 | AT1G09430.1 | 79.475 | 419 | 86 | 0 | 1 | 419 | 1 | 419 | 0.0 | 707 |
Find 123 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCACCAAATTTCTCAATTC+TGG | 0.201559 | 2_1:-54334347 | None:intergenic |
| TCTACCAGAATTGAGAAATT+TGG | 0.220599 | 2_1:+54334343 | Msa0212300:three_prime_UTR |
| GTGAAACCTGACATGCTATT+TGG | 0.259630 | 2_1:+54331666 | Msa0212300:CDS |
| GTCAGGTTTCACAACCAATT+TGG | 0.260494 | 2_1:-54331655 | None:intergenic |
| CTTACTTGTGCAGACTTAAT+AGG | 0.279546 | 2_1:-54331076 | None:intergenic |
| CCTACCGAATCTTTCATTCA+TGG | 0.280049 | 2_1:+54333058 | Msa0212300:CDS |
| ATGGCTTTCATCTTCCAAAT+TGG | 0.286910 | 2_1:+54331641 | Msa0212300:CDS |
| TAAACCCAGTGGGACGAATT+TGG | 0.288832 | 2_1:+54333351 | Msa0212300:CDS |
| ATTTCTCAATTCTGGTAGAT+TGG | 0.304242 | 2_1:-54334339 | None:intergenic |
| TGCTAGACCTCTTTGGTAGT+TGG | 0.322062 | 2_1:-54334034 | None:intergenic |
| ATGCCAGTCATTGTTGCTTC+AGG | 0.322959 | 2_1:-54334195 | None:intergenic |
| TCTGCATAATTTCCAAGTTC+AGG | 0.323143 | 2_1:-54333538 | None:intergenic |
| CTACATTCAGTGGCATAATT+CGG | 0.324225 | 2_1:+54333813 | Msa0212300:CDS |
| TATTGCTACCCTCCCCTTAG+AGG | 0.326320 | 2_1:+54332234 | Msa0212300:CDS |
| CTGCAAGACCTCGCCTTCCT+TGG | 0.327186 | 2_1:-54333575 | None:intergenic |
| GTTTGTATCATGTAGAATTC+TGG | 0.332973 | 2_1:+54334425 | Msa0212300:three_prime_UTR |
| GCAAAGTGAATATACCTCTA+AGG | 0.337642 | 2_1:-54332248 | None:intergenic |
| TGGTTTGGTTGCCTTGAATC+TGG | 0.344146 | 2_1:+54331704 | Msa0212300:CDS |
| CGATGGAAAGCCTTATCCTT+TGG | 0.345095 | 2_1:+54332772 | Msa0212300:CDS |
| AGGGCACTTGGGGATGAAAT+TGG | 0.346283 | 2_1:+54334063 | Msa0212300:CDS |
| AAGACTGTATTTATTCCAAC+AGG | 0.349617 | 2_1:+54332178 | Msa0212300:CDS |
| ATTGAATTTCCTTTGCCATT+TGG | 0.351033 | 2_1:+54333022 | Msa0212300:CDS |
| CTTGGTTATGCTCCTGAACT+TGG | 0.352483 | 2_1:+54333526 | Msa0212300:CDS |
| GAATTGATATTGAAGAGAAC+TGG | 0.362179 | 2_1:+54332031 | Msa0212300:CDS |
| GCTAGACCTCTTTGGTAGTT+GGG | 0.362251 | 2_1:-54334033 | None:intergenic |
| CTCTACTAGCTCATTGATAT+CGG | 0.376342 | 2_1:-54331610 | None:intergenic |
| AAATTGAAGTTGTCATAAAT+AGG | 0.378397 | 2_1:-54334557 | None:intergenic |
| TTATAACAGGTCGGAGATCT+TGG | 0.379885 | 2_1:+54333508 | Msa0212300:intron |
| TCAACAATGAAGGTCGTAAT+AGG | 0.383106 | 2_1:-54331922 | None:intergenic |
| TACATTCAGTGGCATAATTC+GGG | 0.385304 | 2_1:+54333814 | Msa0212300:CDS |
| AAATATGTATTTATAGAGTT+AGG | 0.389329 | 2_1:-54330676 | None:intergenic |
| GTTATATAACCAACCTCAAT+TGG | 0.393618 | 2_1:-54334090 | None:intergenic |
| CTCATTGATATCGGTTGATT+CGG | 0.398687 | 2_1:-54331601 | None:intergenic |
| TGTGGAAAACTCTGGACTCT+TGG | 0.416396 | 2_1:+54334631 | Msa0212300:three_prime_UTR |
| TGAATTAGAAGGTGTGATAT+TGG | 0.425180 | 2_1:-54330718 | None:intergenic |
| GTGGAAAACTCTGGACTCTT+GGG | 0.444192 | 2_1:+54334632 | Msa0212300:three_prime_UTR |
| TGAAATTGGCATTCCAATTG+AGG | 0.450065 | 2_1:+54334077 | Msa0212300:CDS |
| GGTTGCCTTGAATCTGGATG+TGG | 0.453233 | 2_1:+54331710 | Msa0212300:CDS |
| CAAAGTGAATATACCTCTAA+GGG | 0.457604 | 2_1:-54332247 | None:intergenic |
| TGCAAGACCTCGCCTTCCTT+GGG | 0.460623 | 2_1:-54333574 | None:intergenic |
| TTGGTGAGAGATAGAGCATA+TGG | 0.461533 | 2_1:+54334362 | Msa0212300:three_prime_UTR |
| AGATCCAATGGTGAATTAGA+AGG | 0.464089 | 2_1:-54330729 | None:intergenic |
| AGTGGGACGAATTTGGACTA+TGG | 0.472417 | 2_1:+54333358 | Msa0212300:CDS |
| AAGTGCATCTTTAAAATTCA+CGG | 0.472646 | 2_1:+54333325 | Msa0212300:CDS |
| CTTTAAAATATAGGTTGAGA+TGG | 0.473744 | 2_1:+54331885 | Msa0212300:intron |
| AAGCAGAAGCAGTGATGCAC+TGG | 0.476598 | 2_1:-54334233 | None:intergenic |
| CCTCTCATATCCAAAGGATA+AGG | 0.478420 | 2_1:-54332782 | None:intergenic |
| TTTAAAATATAGGTTGAGAT+GGG | 0.478452 | 2_1:+54331886 | Msa0212300:intron |
| TCCAGCCACATCCAGATTCA+AGG | 0.478801 | 2_1:-54331715 | None:intergenic |
| AATTTCCTTTGCCATTTGGA+AGG | 0.482213 | 2_1:+54333026 | Msa0212300:CDS |
| GATGTAAGAGATTCCCCTGT+TGG | 0.482958 | 2_1:-54332193 | None:intergenic |
| AGGTAGAACTCTTCATTATG+TGG | 0.484428 | 2_1:-54331955 | None:intergenic |
| AATGACTGGCATATGCAAAC+AGG | 0.487475 | 2_1:+54334206 | Msa0212300:CDS |
| CGAATTTGGACTATGGTAGC+TGG | 0.492714 | 2_1:+54333365 | Msa0212300:CDS |
| CATTCATGGATTAGACGAAA+AGG | 0.498036 | 2_1:+54333072 | Msa0212300:CDS |
| GCCTTGAATCTGGATGTGGC+TGG | 0.498854 | 2_1:+54331714 | Msa0212300:CDS |
| AATCCTTTCGCTCTTGTCGA+TGG | 0.506060 | 2_1:+54332755 | Msa0212300:CDS |
| TGGCATAATTCGGGCTCTGA+AGG | 0.509155 | 2_1:+54333823 | Msa0212300:CDS |
| TTTGGAAAACGTGGCAAAAG+TGG | 0.509225 | 2_1:+54331684 | Msa0212300:CDS |
| GTCTATCTGAGACAATGTTA+AGG | 0.510544 | 2_1:-54331975 | None:intergenic |
| CGAGCCCTTGTGATCGGAGG+GGG | 0.514169 | 2_1:+54333764 | Msa0212300:CDS |
| AAAACGTGGCAAAAGTGGTT+TGG | 0.522182 | 2_1:+54331689 | Msa0212300:CDS |
| CACACCTTCTAATTCACCAT+TGG | 0.523477 | 2_1:+54330725 | Msa0212300:five_prime_UTR |
| TAATCCATGAATGAAAGATT+CGG | 0.524096 | 2_1:-54333062 | None:intergenic |
| ATAGTCCAAATTCGTCCCAC+TGG | 0.524129 | 2_1:-54333356 | None:intergenic |
| TGATTCTAAGAGGTTGTTGA+AGG | 0.527353 | 2_1:+54331021 | Msa0212300:CDS |
| AAGGTGTGATATTGGTTGGT+GGG | 0.527735 | 2_1:-54330710 | None:intergenic |
| GGACCTGAAGCAACAATGAC+TGG | 0.535680 | 2_1:+54334192 | Msa0212300:CDS |
| TATTGAAGAGAACTGGGATA+AGG | 0.538154 | 2_1:+54332038 | Msa0212300:CDS |
| TCAGAGAGTATGATTCTAAG+AGG | 0.541240 | 2_1:+54331011 | Msa0212300:CDS |
| AAGGGGAGGGTAGCAATAAG+TGG | 0.549058 | 2_1:-54332229 | None:intergenic |
| GGACTCATAACCCTTCCAAA+TGG | 0.550734 | 2_1:-54333037 | None:intergenic |
| TGGACTATGGTAGCTGGAGG+AGG | 0.551064 | 2_1:+54333371 | Msa0212300:CDS |
| ATTTCCTTTGCCATTTGGAA+GGG | 0.554602 | 2_1:+54333027 | Msa0212300:CDS |
| AGCGAGCCCTTGTGATCGGA+GGG | 0.555628 | 2_1:+54333762 | Msa0212300:CDS |
| AAAAGAACGTCTAGGAAAAG+AGG | 0.556146 | 2_1:+54331752 | Msa0212300:CDS |
| GTTGAGATGGGTGGATGCAA+AGG | 0.556217 | 2_1:+54331898 | Msa0212300:CDS |
| GAGTGTAATCTACGCTGATA+CGG | 0.558091 | 2_1:+54333397 | Msa0212300:CDS |
| AAAATATAGGTTGAGATGGG+TGG | 0.559122 | 2_1:+54331889 | Msa0212300:intron |
| TAGTCCAAATTCGTCCCACT+GGG | 0.559233 | 2_1:-54333355 | None:intergenic |
| CACATCTATGTGAGGAGAGG+AGG | 0.562998 | 2_1:+54334009 | Msa0212300:CDS |
| CAAAAGCGAGCCCTTGTGAT+CGG | 0.563449 | 2_1:+54333758 | Msa0212300:CDS |
| GAAGGTGTGATATTGGTTGG+TGG | 0.564553 | 2_1:-54330711 | None:intergenic |
| GGTAGAACTCTTCATTATGT+GGG | 0.569405 | 2_1:-54331954 | None:intergenic |
| AATTGATATTGAAGAGAACT+GGG | 0.569900 | 2_1:+54332032 | Msa0212300:CDS |
| TACAGTGGTGCACCCAAGGA+AGG | 0.571330 | 2_1:+54333562 | Msa0212300:CDS |
| AAGCGAGCCCTTGTGATCGG+AGG | 0.575935 | 2_1:+54333761 | Msa0212300:CDS |
| AGAATACAGTGGTGCACCCA+AGG | 0.576171 | 2_1:+54333558 | Msa0212300:CDS |
| CCTTATCCTTTGGATATGAG+AGG | 0.576585 | 2_1:+54332782 | Msa0212300:CDS |
| GACGAAAGGCTCAACAATGA+AGG | 0.581641 | 2_1:-54331932 | None:intergenic |
| GATGTTGCTGCTACATTCAG+TGG | 0.582780 | 2_1:+54333803 | Msa0212300:CDS |
| GAAAATTTAAGAAGAAGCAA+TGG | 0.584008 | 2_1:+54330976 | Msa0212300:exon |
| AGAGGGATAGGTAGATCCAA+TGG | 0.585479 | 2_1:-54330741 | None:intergenic |
| TTAGAAGGTGTGATATTGGT+TGG | 0.586604 | 2_1:-54330714 | None:intergenic |
| TATCAATGAGCTAGTAGAGA+AGG | 0.587038 | 2_1:+54331614 | Msa0212300:CDS |
| TCTTCATTATGTGGGACGAA+AGG | 0.588065 | 2_1:-54331946 | None:intergenic |
| AATTTAATAATCTAATAAGG+TGG | 0.590349 | 2_1:+54334394 | Msa0212300:three_prime_UTR |
| TGTGCAACTGCGAATCCTGA+TGG | 0.590454 | 2_1:+54333734 | Msa0212300:CDS |
| AACATTGTCTCAGATAGACT+AGG | 0.593258 | 2_1:+54331979 | Msa0212300:CDS |
| GTGAATATACCTCTAAGGGG+AGG | 0.595125 | 2_1:-54332243 | None:intergenic |
| TGGTGCACCCAAGGAAGGCG+AGG | 0.607460 | 2_1:+54333567 | Msa0212300:CDS |
| GACTGTATTTATTCCAACAG+GGG | 0.608657 | 2_1:+54332180 | Msa0212300:CDS |
| TGAATATACCTCTAAGGGGA+GGG | 0.614004 | 2_1:-54332242 | None:intergenic |
| ACATTGTCTCAGATAGACTA+GGG | 0.615163 | 2_1:+54331980 | Msa0212300:CDS |
| AGCTCTCCTCTCATATCCAA+AGG | 0.616144 | 2_1:-54332788 | None:intergenic |
| ATAACCCTTCCAAATGGCAA+AGG | 0.622380 | 2_1:-54333031 | None:intergenic |
| AATTCGGGCTCTGAAGGAGA+AGG | 0.623316 | 2_1:+54333829 | Msa0212300:CDS |
| TTTCCATCGACAAGAGCGAA+AGG | 0.628349 | 2_1:-54332758 | None:intergenic |
| ACTGAATGTAGCAGCAACAT+CGG | 0.637422 | 2_1:-54333801 | None:intergenic |
| TTCACGGTGTTAAACCCAGT+GGG | 0.652064 | 2_1:+54333341 | Msa0212300:CDS |
| CCATGAATGAAAGATTCGGT+AGG | 0.652636 | 2_1:-54333058 | None:intergenic |
| AGACTGTATTTATTCCAACA+GGG | 0.662665 | 2_1:+54332179 | Msa0212300:CDS |
| GGAAATTATGCAGAATACAG+TGG | 0.663076 | 2_1:+54333547 | Msa0212300:CDS |
| ATGCACATCTATGTGAGGAG+AGG | 0.664234 | 2_1:+54334006 | Msa0212300:CDS |
| AGCTAGTAGAGAAGGAACCA+TGG | 0.679479 | 2_1:+54331622 | Msa0212300:CDS |
| GGAGGTCCCAACTACCAAAG+AGG | 0.680499 | 2_1:+54334027 | Msa0212300:CDS |
| AATTTGGAAGATGAAAGCCA+TGG | 0.684449 | 2_1:-54331639 | None:intergenic |
| ATTTGGACTATGGTAGCTGG+AGG | 0.686823 | 2_1:+54333368 | Msa0212300:CDS |
| GACATGCTATTTGGAAAACG+TGG | 0.688407 | 2_1:+54331675 | Msa0212300:CDS |
| AAAGTGAATATACCTCTAAG+GGG | 0.700220 | 2_1:-54332246 | None:intergenic |
| CAAACATGCACATCTATGTG+AGG | 0.701477 | 2_1:+54334001 | Msa0212300:CDS |
| GCGAGCCCTTGTGATCGGAG+GGG | 0.724383 | 2_1:+54333763 | Msa0212300:CDS |
| ATTCACGGTGTTAAACCCAG+TGG | 0.736148 | 2_1:+54333340 | Msa0212300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAATAACAATTAATATTTT+TGG | - | chr2_1:54332864-54332883 | None:intergenic | 10.0% |
| !!! | AAATATTAATTGTTATTTGA+AGG | + | chr2_1:54332865-54332884 | Msa0212300:intron | 10.0% |
| !!! | TATCTTTAAAAAAATTTTGA+AGG | + | chr2_1:54332898-54332917 | Msa0212300:intron | 10.0% |
| !!! | AATTTTATTATGAAAATCTT+AGG | + | chr2_1:54333271-54333290 | Msa0212300:intron | 10.0% |
| !! | TTTATACAAATTATTATAAC+AGG | + | chr2_1:54333495-54333514 | Msa0212300:intron | 10.0% |
| !! | AAATATGTATTTATAGAGTT+AGG | - | chr2_1:54330679-54330698 | None:intergenic | 15.0% |
| !!! | TTACAAAATTTGTTTTTGAT+TGG | + | chr2_1:54330880-54330899 | Msa0212300:intron | 15.0% |
| !!! | AAAACTTGTATACATTATTT+TGG | - | chr2_1:54331385-54331404 | None:intergenic | 15.0% |
| !!! | AAAGTTGATAAAAAAAAAGT+GGG | - | chr2_1:54331820-54331839 | None:intergenic | 15.0% |
| !!! | AAAAGTTGATAAAAAAAAAG+TGG | - | chr2_1:54331821-54331840 | None:intergenic | 15.0% |
| !!! | AACAGAAATATAATTCATTT+TGG | - | chr2_1:54332066-54332085 | None:intergenic | 15.0% |
| !!! | TTATTTTCTCAAATTTTGAT+TGG | - | chr2_1:54332395-54332414 | None:intergenic | 15.0% |
| !!! | ATCAACTAATTAGTTTATTT+TGG | + | chr2_1:54332494-54332513 | Msa0212300:intron | 15.0% |
| !! | TATTTCATTATAAATGAGTA+TGG | + | chr2_1:54332970-54332989 | Msa0212300:intron | 15.0% |
| !!! | AATTGTTTAAGATTAGTATT+TGG | - | chr2_1:54333156-54333175 | None:intergenic | 15.0% |
| !!! | TTTTTATAATCAAACACAAA+CGG | - | chr2_1:54333913-54333932 | None:intergenic | 15.0% |
| !! | AATTTAATAATCTAATAAGG+TGG | + | chr2_1:54334394-54334413 | Msa0212300:three_prime_UTR | 15.0% |
| !!! | TTTATCTATATATTGTTTTG+TGG | + | chr2_1:54334613-54334632 | Msa0212300:three_prime_UTR | 15.0% |
| !! | TTACAAAGAAACTGAAAAAA+AGG | - | chr2_1:54330644-54330663 | None:intergenic | 20.0% |
| !!! | CATGTCTTTCTTTAAAATAT+AGG | + | chr2_1:54331876-54331895 | Msa0212300:intron | 20.0% |
| !!! | TTTAAAATATAGGTTGAGAT+GGG | + | chr2_1:54331886-54331905 | Msa0212300:intron | 20.0% |
| !!! | AACTAATTAGTTTATTTTGG+CGG | + | chr2_1:54332497-54332516 | Msa0212300:intron | 20.0% |
| !!! | GTGATTTTCAATATATTTCA+AGG | + | chr2_1:54332595-54332614 | Msa0212300:CDS | 20.0% |
| !!! | AACAATTAATATTTTTGGGA+GGG | - | chr2_1:54332859-54332878 | None:intergenic | 20.0% |
| !!! | TAACAATTAATATTTTTGGG+AGG | - | chr2_1:54332860-54332879 | None:intergenic | 20.0% |
| !!! | ATGTTCTTTTTATTTTCAGA+TGG | + | chr2_1:54332993-54333012 | Msa0212300:intron | 20.0% |
| !!! | TGTTCTTTTTATTTTCAGAT+GGG | + | chr2_1:54332994-54333013 | Msa0212300:intron | 20.0% |
| !! | AATGAATTGAATATGATTGT+TGG | - | chr2_1:54333121-54333140 | None:intergenic | 20.0% |
| !! | ATTCATAAGATATTAGTACA+AGG | - | chr2_1:54333208-54333227 | None:intergenic | 20.0% |
| !! | TACAAATTATTATAACAGGT+CGG | + | chr2_1:54333499-54333518 | Msa0212300:intron | 20.0% |
| !!! | TTTTATAATCAAACACAAAC+GGG | - | chr2_1:54333912-54333931 | None:intergenic | 20.0% |
| !! | ATACATCAACAATCAATTAA+GGG | - | chr2_1:54333952-54333971 | None:intergenic | 20.0% |
| !! | AATACATCAACAATCAATTA+AGG | - | chr2_1:54333953-54333972 | None:intergenic | 20.0% |
| !! | AAATTGAAGTTGTCATAAAT+AGG | - | chr2_1:54334560-54334579 | None:intergenic | 20.0% |
| !!! | ACTTCAATTTTCTTCTTTAA+AGG | + | chr2_1:54334570-54334589 | Msa0212300:three_prime_UTR | 20.0% |
| !!! | CTTCAATTTTCTTCTTTAAA+GGG | + | chr2_1:54334571-54334590 | Msa0212300:three_prime_UTR | 20.0% |
| ! | ACTGAAAAAAAGGATATGTT+GGG | - | chr2_1:54330634-54330653 | None:intergenic | 25.0% |
| ! | AACTGAAAAAAAGGATATGT+TGG | - | chr2_1:54330635-54330654 | None:intergenic | 25.0% |
| ! | GAAAATTTAAGAAGAAGCAA+TGG | + | chr2_1:54330976-54330995 | Msa0212300:exon | 25.0% |
| !! | ATTAGTCTAACTTTCTGATA+AGG | + | chr2_1:54331345-54331364 | Msa0212300:intron | 25.0% |
| ! | TTAGTCTAACTTTCTGATAA+GGG | + | chr2_1:54331346-54331365 | Msa0212300:intron | 25.0% |
| !! | TGCAATTTTTCACATTGAAA+AGG | + | chr2_1:54331522-54331541 | Msa0212300:intron | 25.0% |
| ! | ATGTTCTTGATTTATTCTTC+AGG | + | chr2_1:54331575-54331594 | Msa0212300:intron | 25.0% |
| !!! | GAAAAAACAGTTCTAAAGTT+TGG | - | chr2_1:54331798-54331817 | None:intergenic | 25.0% |
| !!! | CTTTAAAATATAGGTTGAGA+TGG | + | chr2_1:54331885-54331904 | Msa0212300:intron | 25.0% |
| ! | AATTGATATTGAAGAGAACT+GGG | + | chr2_1:54332032-54332051 | Msa0212300:CDS | 25.0% |
| !!! | ACTTTGAGAATTGAAGTTTT+AGG | - | chr2_1:54332090-54332109 | None:intergenic | 25.0% |
| ! | TTATGTGAACATGTTAACTA+TGG | + | chr2_1:54332281-54332300 | Msa0212300:intron | 25.0% |
| !!! | ACACATTTTTGGTAAAACAA+AGG | - | chr2_1:54332309-54332328 | None:intergenic | 25.0% |
| ! | ACACCTTTAATCATAAGTTT+CGG | + | chr2_1:54332458-54332477 | Msa0212300:intron | 25.0% |
| ! | GTCAATAAAATTGTATTCAC+AGG | - | chr2_1:54332658-54332677 | None:intergenic | 25.0% |
| ! | GGGAAAAAGAAAACAAAATA+AGG | - | chr2_1:54332698-54332717 | None:intergenic | 25.0% |
| !! | AATCCAGATCTAAAATGATA+GGG | - | chr2_1:54332718-54332737 | None:intergenic | 25.0% |
| !! | AAATCCAGATCTAAAATGAT+AGG | - | chr2_1:54332719-54332738 | None:intergenic | 25.0% |
| !!! | ACAATTAATATTTTTGGGAG+GGG | - | chr2_1:54332858-54332877 | None:intergenic | 25.0% |
| ! | TTCAGTTGATTAATTCTAAG+TGG | - | chr2_1:54332947-54332966 | None:intergenic | 25.0% |
| !!! | GTTCTTTTTATTTTCAGATG+GGG | + | chr2_1:54332995-54333014 | Msa0212300:intron | 25.0% |
| ! | TAATCCATGAATGAAAGATT+CGG | - | chr2_1:54333065-54333084 | None:intergenic | 25.0% |
| ! | TATTACTACTAGACTTATCA+TGG | + | chr2_1:54333240-54333259 | Msa0212300:intron | 25.0% |
| !!! | AAGTGCATCTTTAAAATTCA+CGG | + | chr2_1:54333325-54333344 | Msa0212300:CDS | 25.0% |
| !! | TTGATTAATTCTCTCTTTTC+AGG | + | chr2_1:54334164-54334183 | Msa0212300:intron | 25.0% |
| ! | TGAATTAGAAGGTGTGATAT+TGG | - | chr2_1:54330721-54330740 | None:intergenic | 30.0% |
| ! | TTTATCTCGTTTTGTGATGA+AGG | + | chr2_1:54330938-54330957 | Msa0212300:intron | 30.0% |
| ! | TTATCTCGTTTTGTGATGAA+GGG | + | chr2_1:54330939-54330958 | Msa0212300:intron | 30.0% |
| !!! | TTAGCTCTGAAAAGTTTTGT+TGG | + | chr2_1:54331129-54331148 | Msa0212300:intron | 30.0% |
| !!! | TAGCTCTGAAAAGTTTTGTT+GGG | + | chr2_1:54331130-54331149 | Msa0212300:intron | 30.0% |
| TACATTTGCACATCATAAGA+TGG | - | chr2_1:54331223-54331242 | None:intergenic | 30.0% | |
| AGCTACAAAGATCCATTTAA+GGG | - | chr2_1:54331319-54331338 | None:intergenic | 30.0% | |
| TAGCTACAAAGATCCATTTA+AGG | - | chr2_1:54331320-54331339 | None:intergenic | 30.0% | |
| TCAAGAACATACAACAACTT+TGG | - | chr2_1:54331565-54331584 | None:intergenic | 30.0% | |
| !! | AAAACAGTTCTAAAGTTTGG+AGG | - | chr2_1:54331795-54331814 | None:intergenic | 30.0% |
| ! | AGTATAAGCTTTTCTGAATG+TGG | + | chr2_1:54332006-54332025 | Msa0212300:CDS | 30.0% |
| GAATTGATATTGAAGAGAAC+TGG | + | chr2_1:54332031-54332050 | Msa0212300:CDS | 30.0% | |
| ACTCAATATAAGCTACAAAG+TGG | + | chr2_1:54332136-54332155 | Msa0212300:intron | 30.0% | |
| AAGACTGTATTTATTCCAAC+AGG | + | chr2_1:54332178-54332197 | Msa0212300:CDS | 30.0% | |
| AGACTGTATTTATTCCAACA+GGG | + | chr2_1:54332179-54332198 | Msa0212300:CDS | 30.0% | |
| AAAGTGAATATACCTCTAAG+GGG | - | chr2_1:54332249-54332268 | None:intergenic | 30.0% | |
| CAAAGTGAATATACCTCTAA+GGG | - | chr2_1:54332250-54332269 | None:intergenic | 30.0% | |
| GAAACTTATGATTAAAGGTG+TGG | - | chr2_1:54332459-54332478 | None:intergenic | 30.0% | |
| ACACCGAAACTTATGATTAA+AGG | - | chr2_1:54332464-54332483 | None:intergenic | 30.0% | |
| ! | AGAACTTGAAGATTTTCTCA+AGG | + | chr2_1:54332573-54332592 | Msa0212300:CDS | 30.0% |
| ! | GCACATTCATGTTTTGTAAA+TGG | - | chr2_1:54332636-54332655 | None:intergenic | 30.0% |
| ! | TTTCCCTATCATTTTAGATC+TGG | + | chr2_1:54332712-54332731 | Msa0212300:intron | 30.0% |
| ATTGAATTTCCTTTGCCATT+TGG | + | chr2_1:54333022-54333041 | Msa0212300:CDS | 30.0% | |
| !! | ATTTTAAAGATGCACTTGTC+TGG | - | chr2_1:54333322-54333341 | None:intergenic | 30.0% |
| TCATGACGTAGTATGTTATA+AGG | - | chr2_1:54333859-54333878 | None:intergenic | 30.0% | |
| TTGTTGATGTATTACTAACC+AGG | + | chr2_1:54333960-54333979 | Msa0212300:intron | 30.0% | |
| GTTATATAACCAACCTCAAT+TGG | - | chr2_1:54334093-54334112 | None:intergenic | 30.0% | |
| !!! | ATTCTCTCTTTTCAGGTATA+TGG | + | chr2_1:54334171-54334190 | Msa0212300:intron | 30.0% |
| ATTTCTCAATTCTGGTAGAT+TGG | - | chr2_1:54334342-54334361 | None:intergenic | 30.0% | |
| TCTACCAGAATTGAGAAATT+TGG | + | chr2_1:54334343-54334362 | Msa0212300:three_prime_UTR | 30.0% | |
| GTTTGTATCATGTAGAATTC+TGG | + | chr2_1:54334425-54334444 | Msa0212300:three_prime_UTR | 30.0% | |
| !! | TATTGTTTTGTGGAAAACTC+TGG | + | chr2_1:54334623-54334642 | Msa0212300:three_prime_UTR | 30.0% |
| ! | TTAGAAGGTGTGATATTGGT+TGG | - | chr2_1:54330717-54330736 | None:intergenic | 35.0% |
| AGATCCAATGGTGAATTAGA+AGG | - | chr2_1:54330732-54330751 | None:intergenic | 35.0% | |
| CCAGATCAAATCAGCTTAAA+GGG | - | chr2_1:54330917-54330936 | None:intergenic | 35.0% | |
| !! | CCTTTAAGCTGATTTGATCT+GGG | + | chr2_1:54330915-54330934 | Msa0212300:intron | 35.0% |
| ! | TCAGAGAGTATGATTCTAAG+AGG | + | chr2_1:54331011-54331030 | Msa0212300:CDS | 35.0% |
| ! | TGATTCTAAGAGGTTGTTGA+AGG | + | chr2_1:54331021-54331040 | Msa0212300:CDS | 35.0% |
| !! | GAGCATTTTAAGAGAATCTC+TGG | + | chr2_1:54331043-54331062 | Msa0212300:CDS | 35.0% |
| !! | TTTTAAGAGAATCTCTGGAC+AGG | + | chr2_1:54331048-54331067 | Msa0212300:CDS | 35.0% |
| CTTACTTGTGCAGACTTAAT+AGG | - | chr2_1:54331079-54331098 | None:intergenic | 35.0% | |
| AAGTTACCAATTTGAGCATG+TGG | + | chr2_1:54331246-54331265 | Msa0212300:intron | 35.0% | |
| ! | TATGATGATGTATGCAACAG+TGG | + | chr2_1:54331487-54331506 | Msa0212300:intron | 35.0% |
| ! | CTCATTGATATCGGTTGATT+CGG | - | chr2_1:54331604-54331623 | None:intergenic | 35.0% |
| CTCTACTAGCTCATTGATAT+CGG | - | chr2_1:54331613-54331632 | None:intergenic | 35.0% | |
| TATCAATGAGCTAGTAGAGA+AGG | + | chr2_1:54331614-54331633 | Msa0212300:CDS | 35.0% | |
| AATTTGGAAGATGAAAGCCA+TGG | - | chr2_1:54331642-54331661 | None:intergenic | 35.0% | |
| ATGGCTTTCATCTTCCAAAT+TGG | + | chr2_1:54331641-54331660 | Msa0212300:CDS | 35.0% | |
| ! | GCTTTTGTAAAAGAACGTCT+AGG | + | chr2_1:54331744-54331763 | Msa0212300:CDS | 35.0% |
| AAAAGAACGTCTAGGAAAAG+AGG | + | chr2_1:54331752-54331771 | Msa0212300:CDS | 35.0% | |
| ! | AAAATATAGGTTGAGATGGG+TGG | + | chr2_1:54331889-54331908 | Msa0212300:intron | 35.0% |
| TCAACAATGAAGGTCGTAAT+AGG | - | chr2_1:54331925-54331944 | None:intergenic | 35.0% | |
| GGTAGAACTCTTCATTATGT+GGG | - | chr2_1:54331957-54331976 | None:intergenic | 35.0% | |
| AGGTAGAACTCTTCATTATG+TGG | - | chr2_1:54331958-54331977 | None:intergenic | 35.0% | |
| ! | GTCTATCTGAGACAATGTTA+AGG | - | chr2_1:54331978-54331997 | None:intergenic | 35.0% |
| AACATTGTCTCAGATAGACT+AGG | + | chr2_1:54331979-54331998 | Msa0212300:CDS | 35.0% | |
| ACATTGTCTCAGATAGACTA+GGG | + | chr2_1:54331980-54331999 | Msa0212300:CDS | 35.0% | |
| ! | ATAAGCTTTTCTGAATGTGG+AGG | + | chr2_1:54332009-54332028 | Msa0212300:CDS | 35.0% |
| TATTGAAGAGAACTGGGATA+AGG | + | chr2_1:54332038-54332057 | Msa0212300:CDS | 35.0% | |
| !! | AAGTGGTTTGTTCGTATTTC+AGG | + | chr2_1:54332153-54332172 | Msa0212300:intron | 35.0% |
| GACTGTATTTATTCCAACAG+GGG | + | chr2_1:54332180-54332199 | Msa0212300:CDS | 35.0% | |
| GCAAAGTGAATATACCTCTA+AGG | - | chr2_1:54332251-54332270 | None:intergenic | 35.0% | |
| ! | AGAAAGCTGGAACACATTTT+TGG | - | chr2_1:54332320-54332339 | None:intergenic | 35.0% |
| ! | TCCTTCATGCTTTTAGATCA+AGG | + | chr2_1:54332549-54332568 | Msa0212300:intron | 35.0% |
| ! | CCTTCATGCTTTTAGATCAA+GGG | + | chr2_1:54332550-54332569 | Msa0212300:intron | 35.0% |
| ! | AATTTCCTTTGCCATTTGGA+AGG | + | chr2_1:54333026-54333045 | Msa0212300:CDS | 35.0% |
| ! | ATTTCCTTTGCCATTTGGAA+GGG | + | chr2_1:54333027-54333046 | Msa0212300:CDS | 35.0% |
| !! | CATTCATGGATTAGACGAAA+AGG | + | chr2_1:54333072-54333091 | Msa0212300:CDS | 35.0% |
| TCTGCATAATTTCCAAGTTC+AGG | - | chr2_1:54333541-54333560 | None:intergenic | 35.0% | |
| GGAAATTATGCAGAATACAG+TGG | + | chr2_1:54333547-54333566 | Msa0212300:CDS | 35.0% | |
| ACACTGCAAAGAGATTATCA+TGG | - | chr2_1:54333717-54333736 | None:intergenic | 35.0% | |
| CTACATTCAGTGGCATAATT+CGG | + | chr2_1:54333813-54333832 | Msa0212300:CDS | 35.0% | |
| TACATTCAGTGGCATAATTC+GGG | + | chr2_1:54333814-54333833 | Msa0212300:CDS | 35.0% | |
| !!! | CTTCTTTTAGCTTTTGTTCC+TGG | - | chr2_1:54333981-54334000 | None:intergenic | 35.0% |
| !! | TCATTTTTGCTAGACCTCTT+TGG | - | chr2_1:54334044-54334063 | None:intergenic | 35.0% |
| AAAGAGGTCTAGCAAAAATG+AGG | + | chr2_1:54334043-54334062 | Msa0212300:CDS | 35.0% | |
| AAGAGGTCTAGCAAAAATGA+GGG | + | chr2_1:54334044-54334063 | Msa0212300:CDS | 35.0% | |
| TGAAATTGGCATTCCAATTG+AGG | + | chr2_1:54334077-54334096 | Msa0212300:CDS | 35.0% | |
| CTCACCAAATTTCTCAATTC+TGG | - | chr2_1:54334350-54334369 | None:intergenic | 35.0% | |
| ! | AAGGTGTGATATTGGTTGGT+GGG | - | chr2_1:54330713-54330732 | None:intergenic | 40.0% |
| CACACCTTCTAATTCACCAT+TGG | + | chr2_1:54330725-54330744 | Msa0212300:five_prime_UTR | 40.0% | |
| !! | CCCTTTAAGCTGATTTGATC+TGG | + | chr2_1:54330914-54330933 | Msa0212300:intron | 40.0% |
| CCCAGATCAAATCAGCTTAA+AGG | - | chr2_1:54330918-54330937 | None:intergenic | 40.0% | |
| TCTAGACCACATGCTCAAAT+TGG | - | chr2_1:54331255-54331274 | None:intergenic | 40.0% | |
| ! | TTTTCCACACTCACTAGTCA+AGG | - | chr2_1:54331285-54331304 | None:intergenic | 40.0% |
| CTAGTGAGTGTGGAAAAACA+TGG | + | chr2_1:54331288-54331307 | Msa0212300:intron | 40.0% | |
| AACATGGAGAGTCCCTTAAA+TGG | + | chr2_1:54331304-54331323 | Msa0212300:intron | 40.0% | |
| GTCAGGTTTCACAACCAATT+TGG | - | chr2_1:54331658-54331677 | None:intergenic | 40.0% | |
| GTGAAACCTGACATGCTATT+TGG | + | chr2_1:54331666-54331685 | Msa0212300:CDS | 40.0% | |
| ! | CGTTTTCCAAATAGCATGTC+AGG | - | chr2_1:54331675-54331694 | None:intergenic | 40.0% |
| ! | GACATGCTATTTGGAAAACG+TGG | + | chr2_1:54331675-54331694 | Msa0212300:CDS | 40.0% |
| TTTGGAAAACGTGGCAAAAG+TGG | + | chr2_1:54331684-54331703 | Msa0212300:CDS | 40.0% | |
| AAAACGTGGCAAAAGTGGTT+TGG | + | chr2_1:54331689-54331708 | Msa0212300:CDS | 40.0% | |
| !! | TTCTAAAGTTTGGAGGACAG+AGG | - | chr2_1:54331788-54331807 | None:intergenic | 40.0% |
| TCTTCATTATGTGGGACGAA+AGG | - | chr2_1:54331949-54331968 | None:intergenic | 40.0% | |
| ! | TGAATATACCTCTAAGGGGA+GGG | - | chr2_1:54332245-54332264 | None:intergenic | 40.0% |
| TGATAACCAACACAGAAAGC+TGG | - | chr2_1:54332333-54332352 | None:intergenic | 40.0% | |
| ! | CTTATGATTAAAGGTGTGGC+CGG | - | chr2_1:54332455-54332474 | None:intergenic | 40.0% |
| ! | CCCTTGATCTAAAAGCATGA+AGG | - | chr2_1:54332553-54332572 | None:intergenic | 40.0% |
| CCTCTCATATCCAAAGGATA+AGG | - | chr2_1:54332785-54332804 | None:intergenic | 40.0% | |
| CCTTATCCTTTGGATATGAG+AGG | + | chr2_1:54332782-54332801 | Msa0212300:CDS | 40.0% | |
| ATAACCCTTCCAAATGGCAA+AGG | - | chr2_1:54333034-54333053 | None:intergenic | 40.0% | |
| ! | CCATGAATGAAAGATTCGGT+AGG | - | chr2_1:54333061-54333080 | None:intergenic | 40.0% |
| CCTACCGAATCTTTCATTCA+TGG | + | chr2_1:54333058-54333077 | Msa0212300:CDS | 40.0% | |
| GAGTGTAATCTACGCTGATA+CGG | + | chr2_1:54333397-54333416 | Msa0212300:CDS | 40.0% | |
| TTATAACAGGTCGGAGATCT+TGG | + | chr2_1:54333508-54333527 | Msa0212300:intron | 40.0% | |
| ACTGAATGTAGCAGCAACAT+CGG | - | chr2_1:54333804-54333823 | None:intergenic | 40.0% | |
| TCAAACACAAACGGGAACTA+AGG | - | chr2_1:54333904-54333923 | None:intergenic | 40.0% | |
| CAAACATGCACATCTATGTG+AGG | + | chr2_1:54334001-54334020 | Msa0212300:CDS | 40.0% | |
| !! | TAGCAAAAATGAGGGCACTT+GGG | + | chr2_1:54334052-54334071 | Msa0212300:CDS | 40.0% |
| ATTGGCATTCCAATTGAGGT+TGG | + | chr2_1:54334081-54334100 | Msa0212300:intron | 40.0% | |
| AATGACTGGCATATGCAAAC+AGG | + | chr2_1:54334206-54334225 | Msa0212300:CDS | 40.0% | |
| TTGGTGAGAGATAGAGCATA+TGG | + | chr2_1:54334362-54334381 | Msa0212300:three_prime_UTR | 40.0% | |
| ! | GAAGGTGTGATATTGGTTGG+TGG | - | chr2_1:54330714-54330733 | None:intergenic | 45.0% |
| AGAGGGATAGGTAGATCCAA+TGG | - | chr2_1:54330744-54330763 | None:intergenic | 45.0% | |
| CTCTCTCTCTCTCTCTCTAA+CGG | + | chr2_1:54330776-54330795 | Msa0212300:intron | 45.0% | |
| AGCTAGTAGAGAAGGAACCA+TGG | + | chr2_1:54331622-54331641 | Msa0212300:CDS | 45.0% | |
| !! | TGGTTTGGTTGCCTTGAATC+TGG | + | chr2_1:54331704-54331723 | Msa0212300:CDS | 45.0% |
| GACGAAAGGCTCAACAATGA+AGG | - | chr2_1:54331935-54331954 | None:intergenic | 45.0% | |
| GATGTAAGAGATTCCCCTGT+TGG | - | chr2_1:54332196-54332215 | None:intergenic | 45.0% | |
| ! | GTGAATATACCTCTAAGGGG+AGG | - | chr2_1:54332246-54332265 | None:intergenic | 45.0% |
| TGTGTTCCAGCTTTCTGTGT+TGG | + | chr2_1:54332324-54332343 | Msa0212300:intron | 45.0% | |
| TGATTGGTGCAACCATCTCA+GGG | - | chr2_1:54332379-54332398 | None:intergenic | 45.0% | |
| TTGATTGGTGCAACCATCTC+AGG | - | chr2_1:54332380-54332399 | None:intergenic | 45.0% | |
| ! | GTAACTACATGTGTCGCTGT+CGG | + | chr2_1:54332426-54332445 | Msa0212300:intron | 45.0% |
| AATCCTTTCGCTCTTGTCGA+TGG | + | chr2_1:54332755-54332774 | Msa0212300:CDS | 45.0% | |
| TTTCCATCGACAAGAGCGAA+AGG | - | chr2_1:54332761-54332780 | None:intergenic | 45.0% | |
| ! | CGATGGAAAGCCTTATCCTT+TGG | + | chr2_1:54332772-54332791 | Msa0212300:CDS | 45.0% |
| AGCTCTCCTCTCATATCCAA+AGG | - | chr2_1:54332791-54332810 | None:intergenic | 45.0% | |
| GGACTCATAACCCTTCCAAA+TGG | - | chr2_1:54333040-54333059 | None:intergenic | 45.0% | |
| AGATGCACTTGTCTGGAAGA+AGG | - | chr2_1:54333315-54333334 | None:intergenic | 45.0% | |
| ! | ATTCACGGTGTTAAACCCAG+TGG | + | chr2_1:54333340-54333359 | Msa0212300:CDS | 45.0% |
| ! | TTCACGGTGTTAAACCCAGT+GGG | + | chr2_1:54333341-54333360 | Msa0212300:CDS | 45.0% |
| TAAACCCAGTGGGACGAATT+TGG | + | chr2_1:54333351-54333370 | Msa0212300:CDS | 45.0% | |
| TAGTCCAAATTCGTCCCACT+GGG | - | chr2_1:54333358-54333377 | None:intergenic | 45.0% | |
| ATAGTCCAAATTCGTCCCAC+TGG | - | chr2_1:54333359-54333378 | None:intergenic | 45.0% | |
| AGTGGGACGAATTTGGACTA+TGG | + | chr2_1:54333358-54333377 | Msa0212300:CDS | 45.0% | |
| CGAATTTGGACTATGGTAGC+TGG | + | chr2_1:54333365-54333384 | Msa0212300:CDS | 45.0% | |
| ATTTGGACTATGGTAGCTGG+AGG | + | chr2_1:54333368-54333387 | Msa0212300:CDS | 45.0% | |
| CTTGGTTATGCTCCTGAACT+TGG | + | chr2_1:54333526-54333545 | Msa0212300:CDS | 45.0% | |
| GATGTTGCTGCTACATTCAG+TGG | + | chr2_1:54333803-54333822 | Msa0212300:CDS | 45.0% | |
| ATGCACATCTATGTGAGGAG+AGG | + | chr2_1:54334006-54334025 | Msa0212300:CDS | 45.0% | |
| ! | GCTAGACCTCTTTGGTAGTT+GGG | - | chr2_1:54334036-54334055 | None:intergenic | 45.0% |
| ! | TGCTAGACCTCTTTGGTAGT+TGG | - | chr2_1:54334037-54334056 | None:intergenic | 45.0% |
| !! | CTAGCAAAAATGAGGGCACT+TGG | + | chr2_1:54334051-54334070 | Msa0212300:CDS | 45.0% |
| !! | AGCAAAAATGAGGGCACTTG+GGG | + | chr2_1:54334053-54334072 | Msa0212300:CDS | 45.0% |
| ! | ATGCCAGTCATTGTTGCTTC+AGG | - | chr2_1:54334198-54334217 | None:intergenic | 45.0% |
| TGTGGAAAACTCTGGACTCT+TGG | + | chr2_1:54334631-54334650 | Msa0212300:three_prime_UTR | 45.0% | |
| GTGGAAAACTCTGGACTCTT+GGG | + | chr2_1:54334632-54334651 | Msa0212300:three_prime_UTR | 45.0% | |
| !!! | AAATAACAATTAATATTTTT+GGG | - | chr2_1:54332863-54332882 | None:intergenic | 5.0% |
| !! | AAAAATTTAATAATCTAATA+AGG | + | chr2_1:54334391-54334410 | Msa0212300:three_prime_UTR | 5.0% |
| AGAGAGAGAGAGAGAGGGAT+AGG | - | chr2_1:54330756-54330775 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr2_1:54330761-54330780 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr2_1:54330760-54330779 | None:intergenic | 50.0% | |
| CGATCCTTGACTAGTGAGTG+TGG | + | chr2_1:54331278-54331297 | Msa0212300:intron | 50.0% | |
| GGTTGCCTTGAATCTGGATG+TGG | + | chr2_1:54331710-54331729 | Msa0212300:CDS | 50.0% | |
| TCCAGCCACATCCAGATTCA+AGG | - | chr2_1:54331718-54331737 | None:intergenic | 50.0% | |
| GTTGAGATGGGTGGATGCAA+AGG | + | chr2_1:54331898-54331917 | Msa0212300:CDS | 50.0% | |
| AAGGGGAGGGTAGCAATAAG+TGG | - | chr2_1:54332232-54332251 | None:intergenic | 50.0% | |
| TATTGCTACCCTCCCCTTAG+AGG | + | chr2_1:54332234-54332253 | Msa0212300:CDS | 50.0% | |
| AGAATACAGTGGTGCACCCA+AGG | + | chr2_1:54333558-54333577 | Msa0212300:CDS | 50.0% | |
| TGTGCAACTGCGAATCCTGA+TGG | + | chr2_1:54333734-54333753 | Msa0212300:CDS | 50.0% | |
| CAAAAGCGAGCCCTTGTGAT+CGG | + | chr2_1:54333758-54333777 | Msa0212300:CDS | 50.0% | |
| TATTCCCCCTCCGATCACAA+GGG | - | chr2_1:54333771-54333790 | None:intergenic | 50.0% | |
| ! | TGGCATAATTCGGGCTCTGA+AGG | + | chr2_1:54333823-54333842 | Msa0212300:CDS | 50.0% |
| !! | AATTCGGGCTCTGAAGGAGA+AGG | + | chr2_1:54333829-54333848 | Msa0212300:CDS | 50.0% |
| CACATCTATGTGAGGAGAGG+AGG | + | chr2_1:54334009-54334028 | Msa0212300:CDS | 50.0% | |
| ! | AGGGCACTTGGGGATGAAAT+TGG | + | chr2_1:54334063-54334082 | Msa0212300:CDS | 50.0% |
| GGACCTGAAGCAACAATGAC+TGG | + | chr2_1:54334192-54334211 | Msa0212300:CDS | 50.0% | |
| AAGCAGAAGCAGTGATGCAC+TGG | - | chr2_1:54334236-54334255 | None:intergenic | 50.0% | |
| GCCTTGAATCTGGATGTGGC+TGG | + | chr2_1:54331714-54331733 | Msa0212300:CDS | 55.0% | |
| ACACATGCACGACCCTGAGA+TGG | + | chr2_1:54332364-54332383 | Msa0212300:intron | 55.0% | |
| TGGACTATGGTAGCTGGAGG+AGG | + | chr2_1:54333371-54333390 | Msa0212300:CDS | 55.0% | |
| TACAGTGGTGCACCCAAGGA+AGG | + | chr2_1:54333562-54333581 | Msa0212300:CDS | 55.0% | |
| TGCAAGACCTCGCCTTCCTT+GGG | - | chr2_1:54333577-54333596 | None:intergenic | 55.0% | |
| !! | AGGGCTCGCTTTTGTCCATC+AGG | - | chr2_1:54333752-54333771 | None:intergenic | 55.0% |
| CTATTCCCCCTCCGATCACA+AGG | - | chr2_1:54333772-54333791 | None:intergenic | 55.0% | |
| GGAGGTCCCAACTACCAAAG+AGG | + | chr2_1:54334027-54334046 | Msa0212300:CDS | 55.0% | |
| ! | CATGTGTCGCTGTCGGACAC+CGG | + | chr2_1:54332433-54332452 | Msa0212300:intron | 60.0% |
| CTGCAAGACCTCGCCTTCCT+TGG | - | chr2_1:54333578-54333597 | None:intergenic | 60.0% | |
| AAGCGAGCCCTTGTGATCGG+AGG | + | chr2_1:54333761-54333780 | Msa0212300:CDS | 60.0% | |
| AGCGAGCCCTTGTGATCGGA+GGG | + | chr2_1:54333762-54333781 | Msa0212300:CDS | 60.0% | |
| TGGTGCACCCAAGGAAGGCG+AGG | + | chr2_1:54333567-54333586 | Msa0212300:CDS | 65.0% | |
| GCGAGCCCTTGTGATCGGAG+GGG | + | chr2_1:54333763-54333782 | Msa0212300:CDS | 65.0% | |
| CGAGCCCTTGTGATCGGAGG+GGG | + | chr2_1:54333764-54333783 | Msa0212300:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 54330613 | 54334673 | 54330613 | ID=Msa0212300;Name=Msa0212300 |
| chr2_1 | mRNA | 54330613 | 54334673 | 54330613 | ID=Msa0212300-mRNA-1;Parent=Msa0212300;Name=Msa0212300-mRNA-1;_AED=0.09;_eAED=0.09;_QI=198|1|1|1|0.84|0.71|14|396|423 |
| chr2_1 | exon | 54330613 | 54330771 | 54330613 | ID=Msa0212300-mRNA-1:exon:15030;Parent=Msa0212300-mRNA-1 |
| chr2_1 | exon | 54330956 | 54331093 | 54330956 | ID=Msa0212300-mRNA-1:exon:15031;Parent=Msa0212300-mRNA-1 |
| chr2_1 | exon | 54331597 | 54331773 | 54331597 | ID=Msa0212300-mRNA-1:exon:15032;Parent=Msa0212300-mRNA-1 |
| chr2_1 | exon | 54331898 | 54332059 | 54331898 | ID=Msa0212300-mRNA-1:exon:15033;Parent=Msa0212300-mRNA-1 |
| chr2_1 | exon | 54332175 | 54332255 | 54332175 | ID=Msa0212300-mRNA-1:exon:15034;Parent=Msa0212300-mRNA-1 |
| chr2_1 | exon | 54332565 | 54332616 | 54332565 | ID=Msa0212300-mRNA-1:exon:15035;Parent=Msa0212300-mRNA-1 |
| chr2_1 | exon | 54332729 | 54332843 | 54332729 | ID=Msa0212300-mRNA-1:exon:15036;Parent=Msa0212300-mRNA-1 |
| chr2_1 | exon | 54333012 | 54333093 | 54333012 | ID=Msa0212300-mRNA-1:exon:15037;Parent=Msa0212300-mRNA-1 |
| chr2_1 | exon | 54333323 | 54333418 | 54333323 | ID=Msa0212300-mRNA-1:exon:15038;Parent=Msa0212300-mRNA-1 |
| chr2_1 | exon | 54333517 | 54333618 | 54333517 | ID=Msa0212300-mRNA-1:exon:15039;Parent=Msa0212300-mRNA-1 |
| chr2_1 | exon | 54333734 | 54333850 | 54333734 | ID=Msa0212300-mRNA-1:exon:15040;Parent=Msa0212300-mRNA-1 |
| chr2_1 | exon | 54333982 | 54334098 | 54333982 | ID=Msa0212300-mRNA-1:exon:15041;Parent=Msa0212300-mRNA-1 |
| chr2_1 | exon | 54334186 | 54334271 | 54334186 | ID=Msa0212300-mRNA-1:exon:15042;Parent=Msa0212300-mRNA-1 |
| chr2_1 | exon | 54334292 | 54334673 | 54334292 | ID=Msa0212300-mRNA-1:exon:15043;Parent=Msa0212300-mRNA-1 |
| chr2_1 | five_prime_UTR | 54330613 | 54330771 | 54330613 | ID=Msa0212300-mRNA-1:five_prime_utr;Parent=Msa0212300-mRNA-1 |
| chr2_1 | five_prime_UTR | 54330956 | 54330994 | 54330956 | ID=Msa0212300-mRNA-1:five_prime_utr;Parent=Msa0212300-mRNA-1 |
| chr2_1 | CDS | 54330995 | 54331093 | 54330995 | ID=Msa0212300-mRNA-1:cds;Parent=Msa0212300-mRNA-1 |
| chr2_1 | CDS | 54331597 | 54331773 | 54331597 | ID=Msa0212300-mRNA-1:cds;Parent=Msa0212300-mRNA-1 |
| chr2_1 | CDS | 54331898 | 54332059 | 54331898 | ID=Msa0212300-mRNA-1:cds;Parent=Msa0212300-mRNA-1 |
| chr2_1 | CDS | 54332175 | 54332255 | 54332175 | ID=Msa0212300-mRNA-1:cds;Parent=Msa0212300-mRNA-1 |
| chr2_1 | CDS | 54332565 | 54332616 | 54332565 | ID=Msa0212300-mRNA-1:cds;Parent=Msa0212300-mRNA-1 |
| chr2_1 | CDS | 54332729 | 54332843 | 54332729 | ID=Msa0212300-mRNA-1:cds;Parent=Msa0212300-mRNA-1 |
| chr2_1 | CDS | 54333012 | 54333093 | 54333012 | ID=Msa0212300-mRNA-1:cds;Parent=Msa0212300-mRNA-1 |
| chr2_1 | CDS | 54333323 | 54333418 | 54333323 | ID=Msa0212300-mRNA-1:cds;Parent=Msa0212300-mRNA-1 |
| chr2_1 | CDS | 54333517 | 54333618 | 54333517 | ID=Msa0212300-mRNA-1:cds;Parent=Msa0212300-mRNA-1 |
| chr2_1 | CDS | 54333734 | 54333850 | 54333734 | ID=Msa0212300-mRNA-1:cds;Parent=Msa0212300-mRNA-1 |
| chr2_1 | CDS | 54333982 | 54334098 | 54333982 | ID=Msa0212300-mRNA-1:cds;Parent=Msa0212300-mRNA-1 |
| chr2_1 | CDS | 54334186 | 54334257 | 54334186 | ID=Msa0212300-mRNA-1:cds;Parent=Msa0212300-mRNA-1 |
| chr2_1 | three_prime_UTR | 54334258 | 54334271 | 54334258 | ID=Msa0212300-mRNA-1:three_prime_utr;Parent=Msa0212300-mRNA-1 |
| chr2_1 | three_prime_UTR | 54334292 | 54334673 | 54334292 | ID=Msa0212300-mRNA-1:three_prime_utr;Parent=Msa0212300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
