Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0251210 | XP_003595886.1 | 98.582 | 423 | 6 | 0 | 1 | 423 | 1 | 423 | 0.0 | 860 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0251210 | sp|O22718|ACLA2_ARATH | 87.943 | 423 | 51 | 0 | 1 | 423 | 1 | 423 | 0.0 | 776 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0251210 | G7IT44 | 98.582 | 423 | 6 | 0 | 1 | 423 | 1 | 423 | 0.0 | 860 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0212300 | Msa0251210 | 0.911176 | 8.171953e-83 | -8.615850e-47 |
| Msa0251210 | Msa0290050 | 0.881033 | 3.357807e-70 | -8.615850e-47 |
| Msa0251210 | Msa0327810 | 0.876521 | 1.307556e-68 | -8.615850e-47 |
| Msa0251210 | Msa0519760 | 0.804779 | 1.833400e-49 | -8.615850e-47 |
| Msa0251210 | Msa0519810 | 0.804353 | 2.250020e-49 | -8.615850e-47 |
| Msa0251210 | Msa0519840 | 0.803061 | 4.172523e-49 | -8.615850e-47 |
| Msa0251210 | Msa0714640 | 0.806927 | 6.483761e-50 | -8.615850e-47 |
| Msa0251210 | Msa1132990 | 0.824597 | 7.405283e-54 | -8.615850e-47 |
| Msa0251210 | Msa1427110 | 0.809146 | 2.185702e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0251210 | MtrunA17_Chr2g0309471 | 98.582 | 423 | 6 | 0 | 1 | 423 | 1 | 423 | 0.0 | 860 |
| Msa0251210 | MtrunA17_Chr5g0413331 | 91.017 | 423 | 38 | 0 | 1 | 423 | 1 | 423 | 0.0 | 800 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0251210 | AT1G60810.2 | 87.943 | 423 | 51 | 0 | 1 | 423 | 1 | 423 | 0.0 | 776 |
| Msa0251210 | AT1G60810.1 | 87.943 | 423 | 51 | 0 | 1 | 423 | 1 | 423 | 0.0 | 776 |
| Msa0251210 | AT1G10670.4 | 87.234 | 423 | 54 | 0 | 1 | 423 | 1 | 423 | 0.0 | 774 |
| Msa0251210 | AT1G10670.2 | 87.234 | 423 | 54 | 0 | 1 | 423 | 1 | 423 | 0.0 | 774 |
| Msa0251210 | AT1G10670.1 | 87.234 | 423 | 54 | 0 | 1 | 423 | 1 | 423 | 0.0 | 774 |
| Msa0251210 | AT1G10670.3 | 83.296 | 443 | 54 | 1 | 1 | 423 | 1 | 443 | 0.0 | 760 |
| Msa0251210 | AT1G09430.1 | 78.998 | 419 | 88 | 0 | 1 | 419 | 1 | 419 | 0.0 | 706 |
Find 123 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACATTCAGTGGCATAATT+AGG | 0.175001 | 2_2:-40437227 | Msa0251210:CDS |
| CTCACCAAATTTCTCAATTC+TGG | 0.201559 | 2_2:+40436710 | None:intergenic |
| TCTACCAGAATTGAGAAATT+TGG | 0.220599 | 2_2:-40436714 | Msa0251210:three_prime_UTR |
| CTTACTTGTGCAGACTTAAT+TGG | 0.221163 | 2_2:+40440241 | None:intergenic |
| GTGAAACCTGACATGCTATT+TGG | 0.259630 | 2_2:-40439375 | Msa0251210:CDS |
| GTCAGGTTTCACAACCAATT+TGG | 0.260494 | 2_2:+40439386 | None:intergenic |
| CCTACCGAATCTTTCATTCA+TGG | 0.280049 | 2_2:-40437982 | Msa0251210:CDS |
| ATGGCTTTCATCTTCCAAAT+TGG | 0.286910 | 2_2:-40439400 | Msa0251210:CDS |
| TGCTTAGTTATCAATTCTTA+TGG | 0.287007 | 2_2:-40436789 | Msa0251210:exon |
| TAAACCCAGTGGGACGAATT+TGG | 0.288832 | 2_2:-40437689 | Msa0251210:CDS |
| GCAAAGTGAATATACCTCTA+AGG | 0.292059 | 2_2:+40438792 | None:intergenic |
| ATTTCTCAATTCTGGTAGAT+TGG | 0.304242 | 2_2:+40436718 | None:intergenic |
| TGCTAGACCTCTTTGGTAGT+TGG | 0.322062 | 2_2:+40437006 | None:intergenic |
| ATGCCAGTCATTGTTGCTTC+AGG | 0.322959 | 2_2:+40436845 | None:intergenic |
| TCTGCATAATTTCCAAGTTC+AGG | 0.323143 | 2_2:+40437502 | None:intergenic |
| TATTGCTACCCTCCCCTTAG+AGG | 0.326320 | 2_2:-40438806 | Msa0251210:intron |
| CTGCAAGACCTCGCCTTCCT+TGG | 0.327186 | 2_2:+40437465 | None:intergenic |
| GGTTGAGAATGTTTGTATTC+TGG | 0.332508 | 2_2:-40436646 | Msa0251210:three_prime_UTR |
| CGATGGAAAGCCTTATCCTT+TGG | 0.340046 | 2_2:-40438269 | Msa0251210:CDS |
| TGGTTTGGTTGCCTTGAATC+TGG | 0.344146 | 2_2:-40439337 | Msa0251210:CDS |
| AGGGCACTTGGGGATGAAAT+TGG | 0.346283 | 2_2:-40436977 | Msa0251210:CDS |
| AAGACTGTATTTATTCCAAC+AGG | 0.349617 | 2_2:-40438862 | Msa0251210:CDS |
| ATTGAATTTCCTTTGCCATT+TGG | 0.351033 | 2_2:-40438018 | Msa0251210:CDS |
| CTTGGTTATGCTCCTGAACT+TGG | 0.352483 | 2_2:-40437514 | Msa0251210:CDS |
| GAATTGATATTGAAGAGAAC+TGG | 0.362179 | 2_2:-40439012 | Msa0251210:CDS |
| GCTAGACCTCTTTGGTAGTT+GGG | 0.362251 | 2_2:+40437007 | None:intergenic |
| TGTGGAGAACTCTGGACTCT+TGG | 0.372814 | 2_2:-40436440 | Msa0251210:three_prime_UTR |
| CTCTACTAGCTCATTGATAT+CGG | 0.376342 | 2_2:+40439431 | None:intergenic |
| AAATTGAAGTTGTCATAAAT+AGG | 0.378397 | 2_2:+40436514 | None:intergenic |
| TTATAACAGGTCGGAGATCT+TGG | 0.379885 | 2_2:-40437532 | Msa0251210:intron |
| TCAACAATGAAGGTCGTAAT+AGG | 0.383106 | 2_2:+40439121 | None:intergenic |
| GTTATATAACCAACCTCAAT+TGG | 0.393618 | 2_2:+40436950 | None:intergenic |
| TACATTCAGTGGCATAATTA+GGG | 0.395655 | 2_2:-40437226 | Msa0251210:CDS |
| GTGGAGAACTCTGGACTCTT+GGG | 0.412656 | 2_2:-40436439 | Msa0251210:three_prime_UTR |
| CTGATCTTCTTACGTGCCAT+TGG | 0.415193 | 2_2:+40440325 | None:intergenic |
| TGAAATTGGCATTCCAATTG+AGG | 0.450065 | 2_2:-40436963 | Msa0251210:intron |
| GGTTGCCTTGAATCTGGATG+TGG | 0.453233 | 2_2:-40439331 | Msa0251210:CDS |
| CAAAGTGAATATACCTCTAA+GGG | 0.457604 | 2_2:+40438793 | None:intergenic |
| TGCAAGACCTCGCCTTCCTT+GGG | 0.460623 | 2_2:+40437466 | None:intergenic |
| TGAATGAGAAGGTGTGATAT+TGG | 0.464668 | 2_2:+40440588 | None:intergenic |
| AGTGGGACGAATTTGGACTA+TGG | 0.472417 | 2_2:-40437682 | Msa0251210:CDS |
| AAGTGCATCTTTAAAATTCA+CGG | 0.472646 | 2_2:-40437715 | Msa0251210:CDS |
| CTTTAAAATATAGGTTGAGA+TGG | 0.473744 | 2_2:-40439158 | Msa0251210:intron |
| AAGCAGAAGCAGTGATGCAC+TGG | 0.476598 | 2_2:+40436807 | None:intergenic |
| CCTCTCATATCCAAAGGATA+AGG | 0.478420 | 2_2:+40438259 | None:intergenic |
| TTTAAAATATAGGTTGAGAT+GGG | 0.478452 | 2_2:-40439157 | Msa0251210:intron |
| TCCAGCCACATCCAGATTCA+AGG | 0.478801 | 2_2:+40439326 | None:intergenic |
| AATTTCCTTTGCCATTTGGA+AGG | 0.482213 | 2_2:-40438014 | Msa0251210:CDS |
| GATGTAAGAGATTCCCCTGT+TGG | 0.482958 | 2_2:+40438847 | None:intergenic |
| AGGTAGAACTCTTCATTATG+TGG | 0.484428 | 2_2:+40439088 | None:intergenic |
| AATGACTGGCATATGCAAAC+AGG | 0.487475 | 2_2:-40436834 | Msa0251210:CDS |
| CGAATTTGGACTATGGTAGC+TGG | 0.492714 | 2_2:-40437675 | Msa0251210:CDS |
| GCCTTGAATCTGGATGTGGC+TGG | 0.498854 | 2_2:-40439327 | Msa0251210:CDS |
| TTTGGAAAACGTGGCAAAAG+TGG | 0.509225 | 2_2:-40439357 | Msa0251210:CDS |
| GTCTATCTGAGACAATGTTA+AGG | 0.510544 | 2_2:+40439068 | None:intergenic |
| CACACCTTCTCATTCACCAT+TGG | 0.510969 | 2_2:-40440581 | Msa0251210:five_prime_UTR |
| CGAGCCCTTGTGATCGGAGG+GGG | 0.514169 | 2_2:-40437276 | Msa0251210:CDS |
| AAAACGTGGCAAAAGTGGTT+TGG | 0.522182 | 2_2:-40439352 | Msa0251210:CDS |
| AATCCTTTCGCTCTTATCGA+TGG | 0.523543 | 2_2:-40438286 | Msa0251210:CDS |
| TAATCCATGAATGAAAGATT+CGG | 0.524096 | 2_2:+40437978 | None:intergenic |
| ATAGTCCAAATTCGTCCCAC+TGG | 0.524129 | 2_2:+40437684 | None:intergenic |
| TTAGATCAAGGGAGAACTTG+AGG | 0.524186 | 2_2:-40438480 | Msa0251210:intron |
| TGATTCTAAGAGGTTGTTGA+AGG | 0.527353 | 2_2:-40440296 | Msa0251210:CDS |
| GGACCTGAAGCAACAATGAC+TGG | 0.535680 | 2_2:-40436848 | Msa0251210:CDS |
| TGGCATAATTAGGGCACTGA+AGG | 0.536843 | 2_2:-40437217 | Msa0251210:CDS |
| TATTGAAGAGAACTGGGATA+AGG | 0.538154 | 2_2:-40439005 | Msa0251210:intron |
| TCAGAGAGTATGATTCTAAG+AGG | 0.541240 | 2_2:-40440306 | Msa0251210:CDS |
| AAGGTGTGATATTGGTTGGT+GGG | 0.544237 | 2_2:+40440596 | None:intergenic |
| AAGGGGAGGGTAGCAATAAG+TGG | 0.549058 | 2_2:+40438811 | None:intergenic |
| GGACTCATAACCCTTCCAAA+TGG | 0.550734 | 2_2:+40438003 | None:intergenic |
| TGGACTATGGTAGCTGGAGG+AGG | 0.551064 | 2_2:-40437669 | Msa0251210:CDS |
| TGCGCAACTGCGAATCCTGA+TGG | 0.551312 | 2_2:-40437306 | Msa0251210:CDS |
| ATTTCCTTTGCCATTTGGAA+GGG | 0.554602 | 2_2:-40438013 | Msa0251210:CDS |
| AGCGAGCCCTTGTGATCGGA+GGG | 0.555628 | 2_2:-40437278 | Msa0251210:CDS |
| AAAAGAACGTCTAGGAAAAG+AGG | 0.556146 | 2_2:-40439289 | Msa0251210:intron |
| GTTGAGATGGGTGGATGCAA+AGG | 0.556217 | 2_2:-40439145 | Msa0251210:CDS |
| GAGTGTAATCTACGCTGATA+CGG | 0.558091 | 2_2:-40437643 | Msa0251210:intron |
| AAAATATAGGTTGAGATGGG+TGG | 0.559122 | 2_2:-40439154 | Msa0251210:intron |
| TAGTCCAAATTCGTCCCACT+GGG | 0.559233 | 2_2:+40437685 | None:intergenic |
| CACATCTATGTGAGGAGAGG+AGG | 0.562998 | 2_2:-40437031 | Msa0251210:CDS |
| CAAAAGCGAGCCCTTGTGAT+CGG | 0.563449 | 2_2:-40437282 | Msa0251210:CDS |
| GGTAGAACTCTTCATTATGT+GGG | 0.569405 | 2_2:+40439089 | None:intergenic |
| AATTGATATTGAAGAGAACT+GGG | 0.569900 | 2_2:-40439011 | Msa0251210:CDS |
| TACAGTGGTGCACCCAAGGA+AGG | 0.571330 | 2_2:-40437478 | Msa0251210:CDS |
| CATTCATGGATTAGACGAGA+AGG | 0.574136 | 2_2:-40437968 | Msa0251210:intron |
| AAGCGAGCCCTTGTGATCGG+AGG | 0.575935 | 2_2:-40437279 | Msa0251210:CDS |
| AGAATACAGTGGTGCACCCA+AGG | 0.576171 | 2_2:-40437482 | Msa0251210:CDS |
| CCTTATCCTTTGGATATGAG+AGG | 0.576585 | 2_2:-40438259 | Msa0251210:CDS |
| GACGAAAGGCTCAACAATGA+AGG | 0.581641 | 2_2:+40439111 | None:intergenic |
| GATGTTGCTGCTACATTCAG+TGG | 0.582780 | 2_2:-40437237 | Msa0251210:CDS |
| AGAGGGATAGGTAGATCCAA+TGG | 0.585479 | 2_2:+40440565 | None:intergenic |
| TATCAATGAGCTAGTAGAGA+AGG | 0.587038 | 2_2:-40439427 | Msa0251210:CDS |
| TCTTCATTATGTGGGACGAA+AGG | 0.588065 | 2_2:+40439097 | None:intergenic |
| AATTTAATAATCTAATAAGG+TGG | 0.590349 | 2_2:-40436667 | Msa0251210:three_prime_UTR |
| AACATTGTCTCAGATAGACT+AGG | 0.593258 | 2_2:-40439064 | Msa0251210:CDS |
| GTGAATATACCTCTAAGGGG+AGG | 0.595125 | 2_2:+40438797 | None:intergenic |
| TGGTGCACCCAAGGAAGGCG+AGG | 0.607460 | 2_2:-40437473 | Msa0251210:CDS |
| GAATATTTAAGAAGAACCAA+TGG | 0.608122 | 2_2:-40440341 | Msa0251210:exon |
| AATTAGGGCACTGAAGGAGA+AGG | 0.608448 | 2_2:-40437211 | Msa0251210:intron |
| GACTGTATTTATTCCAACAG+GGG | 0.608657 | 2_2:-40438860 | Msa0251210:CDS |
| TGAATATACCTCTAAGGGGA+GGG | 0.614004 | 2_2:+40438798 | None:intergenic |
| ACATTGTCTCAGATAGACTA+GGG | 0.615163 | 2_2:-40439063 | Msa0251210:CDS |
| AGCTCTCCTCTCATATCCAA+AGG | 0.616144 | 2_2:+40438253 | None:intergenic |
| AGATCCAATGGTGAATGAGA+AGG | 0.617106 | 2_2:+40440577 | None:intergenic |
| ATAACCCTTCCAAATGGCAA+AGG | 0.622380 | 2_2:+40438009 | None:intergenic |
| GAAGGTGTGATATTGGTTGG+TGG | 0.629292 | 2_2:+40440595 | None:intergenic |
| ACTGAATGTAGCAGCAACAT+CGG | 0.637422 | 2_2:+40437239 | None:intergenic |
| TTTCCATCGATAAGAGCGAA+AGG | 0.639119 | 2_2:+40438283 | None:intergenic |
| TGAGAAGGTGTGATATTGGT+TGG | 0.645907 | 2_2:+40440592 | None:intergenic |
| TTCACGGTGTTAAACCCAGT+GGG | 0.652064 | 2_2:-40437699 | Msa0251210:CDS |
| CCATGAATGAAAGATTCGGT+AGG | 0.652636 | 2_2:+40437982 | None:intergenic |
| AGACTGTATTTATTCCAACA+GGG | 0.662665 | 2_2:-40438861 | Msa0251210:CDS |
| GGAAATTATGCAGAATACAG+TGG | 0.663076 | 2_2:-40437493 | Msa0251210:CDS |
| ATGCACATCTATGTGAGGAG+AGG | 0.664234 | 2_2:-40437034 | Msa0251210:CDS |
| AGCTAGTAGAGAAGGAACCA+TGG | 0.679479 | 2_2:-40439419 | Msa0251210:CDS |
| GGAGGTCCCAACTACCAAAG+AGG | 0.680499 | 2_2:-40437013 | Msa0251210:CDS |
| AATTTGGAAGATGAAAGCCA+TGG | 0.684449 | 2_2:+40439402 | None:intergenic |
| ATTTGGACTATGGTAGCTGG+AGG | 0.686823 | 2_2:-40437672 | Msa0251210:CDS |
| GACATGCTATTTGGAAAACG+TGG | 0.688407 | 2_2:-40439366 | Msa0251210:CDS |
| AAAGTGAATATACCTCTAAG+GGG | 0.700220 | 2_2:+40438794 | None:intergenic |
| CAAACATGCACATCTATGTG+AGG | 0.701477 | 2_2:-40437039 | Msa0251210:CDS |
| GCGAGCCCTTGTGATCGGAG+GGG | 0.724383 | 2_2:-40437277 | Msa0251210:CDS |
| ATTCACGGTGTTAAACCCAG+TGG | 0.736148 | 2_2:-40437700 | Msa0251210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATAAAATGATTTATATT+TGG | + | chr2_2:40437331-40437350 | None:intergenic | 10.0% |
| !!! | AAAGAAAATATAATTCATTT+TGG | + | chr2_2:40438045-40438064 | None:intergenic | 10.0% |
| !!! | CAAATAACAATTAATATTTT+TGG | + | chr2_2:40438845-40438864 | None:intergenic | 10.0% |
| !!! | AAATATTAATTGTTATTTGA+AGG | - | chr2_2:40438846-40438865 | Msa0251210:CDS | 10.0% |
| !!! | TTTAATTTTTTTTTTTTTGG+AGG | - | chr2_2:40438883-40438902 | Msa0251210:intron | 10.0% |
| !!! | AATTTTATTATGAAAATCTT+AGG | - | chr2_2:40439253-40439272 | Msa0251210:intron | 10.0% |
| !! | TTTATACAAATTATTATAAC+AGG | - | chr2_2:40439477-40439496 | Msa0251210:intron | 10.0% |
| !!! | TTACAAAATTTGTTTTTGAT+TGG | - | chr2_2:40436585-40436604 | Msa0251210:three_prime_UTR | 15.0% |
| !!! | AAAAGTTGATAAAAAAAAGT+GGG | + | chr2_2:40437801-40437820 | None:intergenic | 15.0% |
| !!! | TTTTTTTTATCAACTTTTCT+TGG | - | chr2_2:40437803-40437822 | Msa0251210:intron | 15.0% |
| !!! | TTATTTTCTCAAATTTTGAT+TGG | + | chr2_2:40438377-40438396 | None:intergenic | 15.0% |
| !!! | ATTAACTAATTAGTTTATGT+TGG | - | chr2_2:40438475-40438494 | Msa0251210:CDS | 15.0% |
| !! | AATTTAATAATCTAATAAGG+TGG | - | chr2_2:40440355-40440374 | Msa0251210:five_prime_UTR | 15.0% |
| !!! | TTTATCTATATATTGTTTTG+TGG | - | chr2_2:40440564-40440583 | Msa0251210:five_prime_UTR | 15.0% |
| !!! | TTTATAGTTCATGTTTTTGA+TGG | - | chr2_2:40436810-40436829 | Msa0251210:CDS | 20.0% |
| !!! | TTTTTTAGCTTAAGTTTTGT+TGG | - | chr2_2:40436850-40436869 | Msa0251210:CDS | 20.0% |
| !!! | TTTTTAGCTTAAGTTTTGTT+GGG | - | chr2_2:40436851-40436870 | Msa0251210:CDS | 20.0% |
| !! | CAAACTTGTATACATTATTT+CGG | + | chr2_2:40437093-40437112 | None:intergenic | 20.0% |
| !!! | AATTGATTTTTGTATGTTTG+TGG | - | chr2_2:40437200-40437219 | Msa0251210:intron | 20.0% |
| !! | GATCAAAATACAAAATTAGT+TGG | + | chr2_2:40437438-40437457 | None:intergenic | 20.0% |
| !!! | GAAAAGTTGATAAAAAAAAG+TGG | + | chr2_2:40437802-40437821 | None:intergenic | 20.0% |
| !!! | CATGTCTTTCTTTAAAATAT+AGG | - | chr2_2:40437855-40437874 | Msa0251210:intron | 20.0% |
| !!! | TTTAAAATATAGGTTGAGAT+GGG | - | chr2_2:40437865-40437884 | Msa0251210:intron | 20.0% |
| !!! | ACTTTGAGTATTAAAGTTTT+AGG | + | chr2_2:40438072-40438091 | None:intergenic | 20.0% |
| !! | TTATAAAGAAATAAATGAGC+AGG | + | chr2_2:40438099-40438118 | None:intergenic | 20.0% |
| !!! | GTGATTTTCAATATATTTCA+AGG | - | chr2_2:40438576-40438595 | Msa0251210:intron | 20.0% |
| !!! | AACAATTAATATTTTTGGGA+GGG | + | chr2_2:40438840-40438859 | None:intergenic | 20.0% |
| !!! | TAACAATTAATATTTTTGGG+AGG | + | chr2_2:40438841-40438860 | None:intergenic | 20.0% |
| !!! | ATGTTCTTTTTATTTTCAGA+TGG | - | chr2_2:40438975-40438994 | Msa0251210:intron | 20.0% |
| !!! | TGTTCTTTTTATTTTCAGAT+GGG | - | chr2_2:40438976-40438995 | Msa0251210:intron | 20.0% |
| !! | AATGAATTGAATATGATTGT+TGG | + | chr2_2:40439103-40439122 | None:intergenic | 20.0% |
| !! | ATTCATAAGATATTAGTACA+AGG | + | chr2_2:40439190-40439209 | None:intergenic | 20.0% |
| !! | TACAAATTATTATAACAGGT+CGG | - | chr2_2:40439481-40439500 | Msa0251210:intron | 20.0% |
| !!! | TTTTTATAATCAGACACAAA+CGG | + | chr2_2:40439895-40439914 | None:intergenic | 20.0% |
| !! | ATACATCAACAATCAATTAA+GGG | + | chr2_2:40439934-40439953 | None:intergenic | 20.0% |
| !! | AATACATCAACAATCAATTA+AGG | + | chr2_2:40439935-40439954 | None:intergenic | 20.0% |
| !! | AAATTGAAGTTGTCATAAAT+AGG | + | chr2_2:40440511-40440530 | None:intergenic | 20.0% |
| !!! | ACTTCAATTTTCTTCTTTAA+AGG | - | chr2_2:40440521-40440540 | Msa0251210:intron | 20.0% |
| !!! | CTTCAATTTTCTTCTTTAAA+GGG | - | chr2_2:40440522-40440541 | Msa0251210:intron | 20.0% |
| !!! | TTTATCTTGTTTTGTGATGA+AGG | - | chr2_2:40436643-40436662 | Msa0251210:three_prime_UTR | 25.0% |
| !!! | TTATCTTGTTTTGTGATGAA+GGG | - | chr2_2:40436644-40436663 | Msa0251210:three_prime_UTR | 25.0% |
| ! | GAATATTTAAGAAGAACCAA+TGG | - | chr2_2:40436681-40436700 | Msa0251210:three_prime_UTR | 25.0% |
| ! | ATTACTCTAACTTTCTGATA+AGG | - | chr2_2:40437053-40437072 | Msa0251210:CDS | 25.0% |
| ! | TTACTCTAACTTTCTGATAA+GGG | - | chr2_2:40437054-40437073 | Msa0251210:CDS | 25.0% |
| ! | GTCAAAATCAATTTATGTCA+TGG | - | chr2_2:40437379-40437398 | Msa0251210:intron | 25.0% |
| ! | TTAATATGACTATGTGTGTT+TGG | + | chr2_2:40437410-40437429 | None:intergenic | 25.0% |
| !! | TGCAAATTTTCACATTGAAA+AGG | - | chr2_2:40437503-40437522 | Msa0251210:CDS | 25.0% |
| !! | CTAAAGTTGTTGTATTTTCT+TGG | - | chr2_2:40437543-40437562 | Msa0251210:intron | 25.0% |
| !!! | GAAAAAACAGTTCTAAAGTT+TGG | + | chr2_2:40437779-40437798 | None:intergenic | 25.0% |
| !!! | CTTTAAAATATAGGTTGAGA+TGG | - | chr2_2:40437864-40437883 | Msa0251210:intron | 25.0% |
| ! | AATTGATATTGAAGAGAACT+GGG | - | chr2_2:40438011-40438030 | Msa0251210:CDS | 25.0% |
| ! | ATTCAATATAAGCTACAAAG+TGG | - | chr2_2:40438118-40438137 | Msa0251210:intron | 25.0% |
| !!! | AAGTGGTTTGTTAATATTTC+AGG | - | chr2_2:40438135-40438154 | Msa0251210:intron | 25.0% |
| !!! | ACACATTTTTGGTAAAACAA+AGG | + | chr2_2:40438291-40438310 | None:intergenic | 25.0% |
| ! | AGTTAATCAATAAGTAACAC+TGG | + | chr2_2:40438462-40438481 | None:intergenic | 25.0% |
| !! | AACTAATTAGTTTATGTTGG+TGG | - | chr2_2:40438478-40438497 | Msa0251210:CDS | 25.0% |
| ! | GGGAAAAAGAAAACAAAATA+AGG | + | chr2_2:40438679-40438698 | None:intergenic | 25.0% |
| !! | AATCCAGATCTAAAATGATA+GGG | + | chr2_2:40438699-40438718 | None:intergenic | 25.0% |
| !! | AAATCCAGATCTAAAATGAT+AGG | + | chr2_2:40438700-40438719 | None:intergenic | 25.0% |
| !!! | ACAATTAATATTTTTGGGAG+GGG | + | chr2_2:40438839-40438858 | None:intergenic | 25.0% |
| ! | TCACAGTTGATTAATTCTAA+GGG | + | chr2_2:40438932-40438951 | None:intergenic | 25.0% |
| ! | ATCACAGTTGATTAATTCTA+AGG | + | chr2_2:40438933-40438952 | None:intergenic | 25.0% |
| !!! | GTTCTTTTTATTTTCAGATG+GGG | - | chr2_2:40438977-40438996 | Msa0251210:intron | 25.0% |
| ! | TAATCCATGAATGAAAGATT+CGG | + | chr2_2:40439047-40439066 | None:intergenic | 25.0% |
| ! | TATTACTACTAGACTTATCA+TGG | - | chr2_2:40439222-40439241 | Msa0251210:intron | 25.0% |
| !!! | AAGTGCATCTTTAAAATTCA+CGG | - | chr2_2:40439307-40439326 | Msa0251210:CDS | 25.0% |
| ! | AAAACAAGAAAGTTATCATG+AGG | + | chr2_2:40439856-40439875 | None:intergenic | 25.0% |
| !! | TTTTATAATCAGACACAAAC+GGG | + | chr2_2:40439894-40439913 | None:intergenic | 25.0% |
| !! | TTGATTAATTCTCTCTTTTC+AGG | - | chr2_2:40440146-40440165 | Msa0251210:intron | 25.0% |
| ! | TGCTTAGTTATCAATTCTTA+TGG | - | chr2_2:40440233-40440252 | Msa0251210:intron | 25.0% |
| AGCTACAAAGATCCATTTAA+GGG | + | chr2_2:40437027-40437046 | None:intergenic | 30.0% | |
| TAGCTACAAAGATCCATTTA+AGG | + | chr2_2:40437028-40437047 | None:intergenic | 30.0% | |
| GATTCAAATATGTGCATGTT+TGG | - | chr2_2:40437136-40437155 | Msa0251210:intron | 30.0% | |
| !! | GCATGTTTGGTTTCAATTTT+TGG | - | chr2_2:40437149-40437168 | Msa0251210:intron | 30.0% |
| ! | ATTGATTCTAGCTAGAAACT+AGG | - | chr2_2:40437235-40437254 | Msa0251210:CDS | 30.0% |
| ! | TATGATGATGTATGTAACAG+TGG | - | chr2_2:40437468-40437487 | Msa0251210:CDS | 30.0% |
| !! | AAAACAGTTCTAAAGTTTGG+AGG | + | chr2_2:40437776-40437795 | None:intergenic | 30.0% |
| ! | AGTATAAGCTTTTCTGAATG+TGG | - | chr2_2:40437985-40438004 | Msa0251210:CDS | 30.0% |
| GAATTGATATTGAAGAGAAC+TGG | - | chr2_2:40438010-40438029 | Msa0251210:CDS | 30.0% | |
| AAGACTGTATTTATTCCAAC+AGG | - | chr2_2:40438160-40438179 | Msa0251210:intron | 30.0% | |
| AGACTGTATTTATTCCAACA+GGG | - | chr2_2:40438161-40438180 | Msa0251210:intron | 30.0% | |
| AAAGTGAATATACCTCTAAG+GGG | + | chr2_2:40438231-40438250 | None:intergenic | 30.0% | |
| CAAAGTGAATATACCTCTAA+GGG | + | chr2_2:40438232-40438251 | None:intergenic | 30.0% | |
| ! | TTCTGTGAAAATGTTGACTA+TGG | - | chr2_2:40438263-40438282 | Msa0251210:CDS | 30.0% |
| ACACTGGAACTTATGATTAA+AGG | + | chr2_2:40438446-40438465 | None:intergenic | 30.0% | |
| GTCAATAAAATTGTATTCGC+AGG | + | chr2_2:40438639-40438658 | None:intergenic | 30.0% | |
| ! | TTTCCCTATCATTTTAGATC+TGG | - | chr2_2:40438693-40438712 | Msa0251210:intron | 30.0% |
| CACAGTTGATTAATTCTAAG+GGG | + | chr2_2:40438931-40438950 | None:intergenic | 30.0% | |
| ATTGAATTTCCTTTGCCATT+TGG | - | chr2_2:40439004-40439023 | Msa0251210:intron | 30.0% | |
| !! | ATTTTAAAGATGCACTTGTC+TGG | + | chr2_2:40439304-40439323 | None:intergenic | 30.0% |
| TACATTCAGTGGCATAATTA+GGG | - | chr2_2:40439796-40439815 | Msa0251210:intron | 30.0% | |
| TCATGAGGTAGTATGTTATA+AGG | + | chr2_2:40439841-40439860 | None:intergenic | 30.0% | |
| TTGTTGATGTATTACTAACC+AGG | - | chr2_2:40439942-40439961 | Msa0251210:intron | 30.0% | |
| GTTATATAACCAACCTCAAT+TGG | + | chr2_2:40440075-40440094 | None:intergenic | 30.0% | |
| !!! | ATTCTCTCTTTTCAGGTATA+TGG | - | chr2_2:40440153-40440172 | Msa0251210:intron | 30.0% |
| ATTTCTCAATTCTGGTAGAT+TGG | + | chr2_2:40440307-40440326 | None:intergenic | 30.0% | |
| TCTACCAGAATTGAGAAATT+TGG | - | chr2_2:40440308-40440327 | Msa0251210:CDS | 30.0% | |
| ! | TGAATGAGAAGGTGTGATAT+TGG | + | chr2_2:40436437-40436456 | None:intergenic | 35.0% |
| CCAGATCAAATCAGCTTAAA+GGG | + | chr2_2:40436622-40436641 | None:intergenic | 35.0% | |
| !! | CCTTTAAGCTGATTTGATCT+GGG | - | chr2_2:40436620-40436639 | Msa0251210:three_prime_UTR | 35.0% |
| ! | TCAGAGAGTATGATTCTAAG+AGG | - | chr2_2:40436716-40436735 | Msa0251210:three_prime_UTR | 35.0% |
| ! | TGATTCTAAGAGGTTGTTGA+AGG | - | chr2_2:40436726-40436745 | Msa0251210:three_prime_UTR | 35.0% |
| !! | GAGCATTTTAAGAGAATCTC+TGG | - | chr2_2:40436748-40436767 | Msa0251210:three_prime_UTR | 35.0% |
| !! | TTTTAAGAGAATCTCTGGAC+AGG | - | chr2_2:40436753-40436772 | Msa0251210:three_prime_UTR | 35.0% |
| CTTACTTGTGCAGACTTAAT+TGG | + | chr2_2:40436784-40436803 | None:intergenic | 35.0% | |
| TGTATACATTTGCACATCGA+TGG | + | chr2_2:40436935-40436954 | None:intergenic | 35.0% | |
| AAGTTACCAATTTGAGCATG+TGG | - | chr2_2:40436954-40436973 | Msa0251210:intron | 35.0% | |
| CTCTACTAGCTCATTGATAT+CGG | + | chr2_2:40437594-40437613 | None:intergenic | 35.0% | |
| TATCAATGAGCTAGTAGAGA+AGG | - | chr2_2:40437595-40437614 | Msa0251210:intron | 35.0% | |
| AATTTGGAAGATGAAAGCCA+TGG | + | chr2_2:40437623-40437642 | None:intergenic | 35.0% | |
| ATGGCTTTCATCTTCCAAAT+TGG | - | chr2_2:40437622-40437641 | Msa0251210:intron | 35.0% | |
| ! | GCTTTTGTAAAAGAACGTCT+AGG | - | chr2_2:40437725-40437744 | Msa0251210:intron | 35.0% |
| AAAAGAACGTCTAGGAAAAG+AGG | - | chr2_2:40437733-40437752 | Msa0251210:intron | 35.0% | |
| ! | AAAATATAGGTTGAGATGGG+TGG | - | chr2_2:40437868-40437887 | Msa0251210:intron | 35.0% |
| TCAACAATGAAGGTCGTAAT+AGG | + | chr2_2:40437904-40437923 | None:intergenic | 35.0% | |
| GGTAGAACTCTTCATTATGT+GGG | + | chr2_2:40437936-40437955 | None:intergenic | 35.0% | |
| AGGTAGAACTCTTCATTATG+TGG | + | chr2_2:40437937-40437956 | None:intergenic | 35.0% | |
| ! | GTCTATCTGAGACAATGTTA+AGG | + | chr2_2:40437957-40437976 | None:intergenic | 35.0% |
| AACATTGTCTCAGATAGACT+AGG | - | chr2_2:40437958-40437977 | Msa0251210:intron | 35.0% | |
| ACATTGTCTCAGATAGACTA+GGG | - | chr2_2:40437959-40437978 | Msa0251210:intron | 35.0% | |
| ! | ATAAGCTTTTCTGAATGTGG+AGG | - | chr2_2:40437988-40438007 | Msa0251210:CDS | 35.0% |
| TATTGAAGAGAACTGGGATA+AGG | - | chr2_2:40438017-40438036 | Msa0251210:CDS | 35.0% | |
| GACTGTATTTATTCCAACAG+GGG | - | chr2_2:40438162-40438181 | Msa0251210:intron | 35.0% | |
| GCAAAGTGAATATACCTCTA+AGG | + | chr2_2:40438233-40438252 | None:intergenic | 35.0% | |
| ! | AGAAAGCTGGAACACATTTT+TGG | + | chr2_2:40438302-40438321 | None:intergenic | 35.0% |
| ! | TTGAGTGTTACTACATGTGT+CGG | - | chr2_2:40438402-40438421 | Msa0251210:intron | 35.0% |
| ! | CTTATGATTAAAGGTGTGTC+CGG | + | chr2_2:40438437-40438456 | None:intergenic | 35.0% |
| ! | AGAACTTGAGGATTTTCTCA+AGG | - | chr2_2:40438554-40438573 | Msa0251210:intron | 35.0% |
| GCACATTCATGTTCTGTAAA+TGG | + | chr2_2:40438617-40438636 | None:intergenic | 35.0% | |
| ! | AATTTCCTTTGCCATTTGGA+AGG | - | chr2_2:40439008-40439027 | Msa0251210:CDS | 35.0% |
| ! | ATTTCCTTTGCCATTTGGAA+GGG | - | chr2_2:40439009-40439028 | Msa0251210:CDS | 35.0% |
| TCTGCATAATTTCCAAGTTC+AGG | + | chr2_2:40439523-40439542 | None:intergenic | 35.0% | |
| GGAAATTATGCAGAATACAG+TGG | - | chr2_2:40439529-40439548 | Msa0251210:intron | 35.0% | |
| CTACATTCAGTGGCATAATT+AGG | - | chr2_2:40439795-40439814 | Msa0251210:intron | 35.0% | |
| !!! | CTTCTTTTAGCTTTTGTTCC+TGG | + | chr2_2:40439963-40439982 | None:intergenic | 35.0% |
| !! | TCATTTTTGCTAGACCTCTT+TGG | + | chr2_2:40440026-40440045 | None:intergenic | 35.0% |
| AAAGAGGTCTAGCAAAAATG+AGG | - | chr2_2:40440025-40440044 | Msa0251210:intron | 35.0% | |
| AAGAGGTCTAGCAAAAATGA+GGG | - | chr2_2:40440026-40440045 | Msa0251210:intron | 35.0% | |
| TGAAATTGGCATTCCAATTG+AGG | - | chr2_2:40440059-40440078 | Msa0251210:intron | 35.0% | |
| CTCACCAAATTTCTCAATTC+TGG | + | chr2_2:40440315-40440334 | None:intergenic | 35.0% | |
| GGTTGAGAATGTTTGTATTC+TGG | - | chr2_2:40440376-40440395 | Msa0251210:intron | 35.0% | |
| !! | TATTGTTTTGTGGAGAACTC+TGG | - | chr2_2:40440574-40440593 | Msa0251210:five_prime_UTR | 35.0% |
| ! | AAGGTGTGATATTGGTTGGT+GGG | + | chr2_2:40436429-40436448 | None:intergenic | 40.0% |
| ! | TGAGAAGGTGTGATATTGGT+TGG | + | chr2_2:40436433-40436452 | None:intergenic | 40.0% |
| AGATCCAATGGTGAATGAGA+AGG | + | chr2_2:40436448-40436467 | None:intergenic | 40.0% | |
| !! | CCCTTTAAGCTGATTTGATC+TGG | - | chr2_2:40436619-40436638 | Msa0251210:three_prime_UTR | 40.0% |
| CCCAGATCAAATCAGCTTAA+AGG | + | chr2_2:40436623-40436642 | None:intergenic | 40.0% | |
| TCTAGACCACATGCTCAAAT+TGG | + | chr2_2:40436963-40436982 | None:intergenic | 40.0% | |
| ! | TTTTCCACACTCACTAGTCA+AGG | + | chr2_2:40436993-40437012 | None:intergenic | 40.0% |
| AGATCCATTTAAGGGACTCT+CGG | + | chr2_2:40437019-40437038 | None:intergenic | 40.0% | |
| GTCAGGTTTCACAACCAATT+TGG | + | chr2_2:40437639-40437658 | None:intergenic | 40.0% | |
| GTGAAACCTGACATGCTATT+TGG | - | chr2_2:40437647-40437666 | Msa0251210:CDS | 40.0% | |
| ! | CGTTTTCCAAATAGCATGTC+AGG | + | chr2_2:40437656-40437675 | None:intergenic | 40.0% |
| ! | GACATGCTATTTGGAAAACG+TGG | - | chr2_2:40437656-40437675 | Msa0251210:CDS | 40.0% |
| TTTGGAAAACGTGGCAAAAG+TGG | - | chr2_2:40437665-40437684 | Msa0251210:CDS | 40.0% | |
| AAAACGTGGCAAAAGTGGTT+TGG | - | chr2_2:40437670-40437689 | Msa0251210:CDS | 40.0% | |
| !! | TTCTAAAGTTTGGAGGACAG+AGG | + | chr2_2:40437769-40437788 | None:intergenic | 40.0% |
| TCTTCATTATGTGGGACGAA+AGG | + | chr2_2:40437928-40437947 | None:intergenic | 40.0% | |
| ! | TGAATATACCTCTAAGGGGA+GGG | + | chr2_2:40438227-40438246 | None:intergenic | 40.0% |
| CAATAACCAACACAGAAAGC+TGG | + | chr2_2:40438315-40438334 | None:intergenic | 40.0% | |
| ! | TCCTTCGTGCTTTTAGATCA+AGG | - | chr2_2:40438530-40438549 | Msa0251210:intron | 40.0% |
| ! | CCTTCGTGCTTTTAGATCAA+GGG | - | chr2_2:40438531-40438550 | Msa0251210:intron | 40.0% |
| TTAGATCAAGGGAGAACTTG+AGG | - | chr2_2:40438542-40438561 | Msa0251210:intron | 40.0% | |
| AATCCTTTCGCTCTTATCGA+TGG | - | chr2_2:40438736-40438755 | Msa0251210:intron | 40.0% | |
| TTTCCATCGATAAGAGCGAA+AGG | + | chr2_2:40438742-40438761 | None:intergenic | 40.0% | |
| CCTCTCATATCCAAAGGATA+AGG | + | chr2_2:40438766-40438785 | None:intergenic | 40.0% | |
| CCTTATCCTTTGGATATGAG+AGG | - | chr2_2:40438763-40438782 | Msa0251210:intron | 40.0% | |
| ATAACCCTTCCAAATGGCAA+AGG | + | chr2_2:40439016-40439035 | None:intergenic | 40.0% | |
| ! | CCATGAATGAAAGATTCGGT+AGG | + | chr2_2:40439043-40439062 | None:intergenic | 40.0% |
| CCTACCGAATCTTTCATTCA+TGG | - | chr2_2:40439040-40439059 | Msa0251210:CDS | 40.0% | |
| !! | CATTCATGGATTAGACGAGA+AGG | - | chr2_2:40439054-40439073 | Msa0251210:CDS | 40.0% |
| GAGTGTAATCTACGCTGATA+CGG | - | chr2_2:40439379-40439398 | Msa0251210:CDS | 40.0% | |
| TTATAACAGGTCGGAGATCT+TGG | - | chr2_2:40439490-40439509 | Msa0251210:intron | 40.0% | |
| GCACTGCAAAGAGATTATCA+TGG | + | chr2_2:40439699-40439718 | None:intergenic | 40.0% | |
| ACTGAATGTAGCAGCAACAT+CGG | + | chr2_2:40439786-40439805 | None:intergenic | 40.0% | |
| CAAACATGCACATCTATGTG+AGG | - | chr2_2:40439983-40440002 | Msa0251210:intron | 40.0% | |
| !! | TAGCAAAAATGAGGGCACTT+GGG | - | chr2_2:40440034-40440053 | Msa0251210:intron | 40.0% |
| ATTGGCATTCCAATTGAGGT+TGG | - | chr2_2:40440063-40440082 | Msa0251210:intron | 40.0% | |
| AATGACTGGCATATGCAAAC+AGG | - | chr2_2:40440188-40440207 | Msa0251210:intron | 40.0% | |
| ! | GAAGGTGTGATATTGGTTGG+TGG | + | chr2_2:40436430-40436449 | None:intergenic | 45.0% |
| CACACCTTCTCATTCACCAT+TGG | - | chr2_2:40436441-40436460 | Msa0251210:three_prime_UTR | 45.0% | |
| AGAGGGATAGGTAGATCCAA+TGG | + | chr2_2:40436460-40436479 | None:intergenic | 45.0% | |
| TTAGAGAGAGAGAGAGGGAT+AGG | + | chr2_2:40436472-40436491 | None:intergenic | 45.0% | |
| ATCCCTCTCTCTCTCTCTAA+CGG | - | chr2_2:40436472-40436491 | Msa0251210:three_prime_UTR | 45.0% | |
| TACCGTTAGAGAGAGAGAGA+GGG | + | chr2_2:40436477-40436496 | None:intergenic | 45.0% | |
| CTGATCTTCTTACGTGCCAT+TGG | + | chr2_2:40436700-40436719 | None:intergenic | 45.0% | |
| AACACCGAGAGTCCCTTAAA+TGG | - | chr2_2:40437012-40437031 | Msa0251210:CDS | 45.0% | |
| AGCTAGTAGAGAAGGAACCA+TGG | - | chr2_2:40437603-40437622 | Msa0251210:intron | 45.0% | |
| !! | TGGTTTGGTTGCCTTGAATC+TGG | - | chr2_2:40437685-40437704 | Msa0251210:CDS | 45.0% |
| GACGAAAGGCTCAACAATGA+AGG | + | chr2_2:40437914-40437933 | None:intergenic | 45.0% | |
| GATGTAAGAGATTCCCCTGT+TGG | + | chr2_2:40438178-40438197 | None:intergenic | 45.0% | |
| ! | GTGAATATACCTCTAAGGGG+AGG | + | chr2_2:40438228-40438247 | None:intergenic | 45.0% |
| TGTGTTCCAGCTTTCTGTGT+TGG | - | chr2_2:40438306-40438325 | Msa0251210:CDS | 45.0% | |
| ! | GTTACTACATGTGTCGGTGT+CGG | - | chr2_2:40438408-40438427 | Msa0251210:intron | 45.0% |
| ! | CCCTTGATCTAAAAGCACGA+AGG | + | chr2_2:40438534-40438553 | None:intergenic | 45.0% |
| ! | CGATGGAAAGCCTTATCCTT+TGG | - | chr2_2:40438753-40438772 | Msa0251210:intron | 45.0% |
| AGCTCTCCTCTCATATCCAA+AGG | + | chr2_2:40438772-40438791 | None:intergenic | 45.0% | |
| GGACTCATAACCCTTCCAAA+TGG | + | chr2_2:40439022-40439041 | None:intergenic | 45.0% | |
| AGATGCACTTGTCTGGAAGA+AGG | + | chr2_2:40439297-40439316 | None:intergenic | 45.0% | |
| ! | ATTCACGGTGTTAAACCCAG+TGG | - | chr2_2:40439322-40439341 | Msa0251210:CDS | 45.0% |
| ! | TTCACGGTGTTAAACCCAGT+GGG | - | chr2_2:40439323-40439342 | Msa0251210:CDS | 45.0% |
| TAAACCCAGTGGGACGAATT+TGG | - | chr2_2:40439333-40439352 | Msa0251210:CDS | 45.0% | |
| TAGTCCAAATTCGTCCCACT+GGG | + | chr2_2:40439340-40439359 | None:intergenic | 45.0% | |
| ATAGTCCAAATTCGTCCCAC+TGG | + | chr2_2:40439341-40439360 | None:intergenic | 45.0% | |
| AGTGGGACGAATTTGGACTA+TGG | - | chr2_2:40439340-40439359 | Msa0251210:CDS | 45.0% | |
| CGAATTTGGACTATGGTAGC+TGG | - | chr2_2:40439347-40439366 | Msa0251210:CDS | 45.0% | |
| ATTTGGACTATGGTAGCTGG+AGG | - | chr2_2:40439350-40439369 | Msa0251210:CDS | 45.0% | |
| CTTGGTTATGCTCCTGAACT+TGG | - | chr2_2:40439508-40439527 | Msa0251210:intron | 45.0% | |
| GATGTTGCTGCTACATTCAG+TGG | - | chr2_2:40439785-40439804 | Msa0251210:intron | 45.0% | |
| !! | TGGCATAATTAGGGCACTGA+AGG | - | chr2_2:40439805-40439824 | Msa0251210:intron | 45.0% |
| !! | AATTAGGGCACTGAAGGAGA+AGG | - | chr2_2:40439811-40439830 | Msa0251210:intron | 45.0% |
| TCAGACACAAACGGGAACTA+AGG | + | chr2_2:40439886-40439905 | None:intergenic | 45.0% | |
| ATGCACATCTATGTGAGGAG+AGG | - | chr2_2:40439988-40440007 | Msa0251210:intron | 45.0% | |
| ! | GCTAGACCTCTTTGGTAGTT+GGG | + | chr2_2:40440018-40440037 | None:intergenic | 45.0% |
| ! | TGCTAGACCTCTTTGGTAGT+TGG | + | chr2_2:40440019-40440038 | None:intergenic | 45.0% |
| !! | CTAGCAAAAATGAGGGCACT+TGG | - | chr2_2:40440033-40440052 | Msa0251210:intron | 45.0% |
| !! | AGCAAAAATGAGGGCACTTG+GGG | - | chr2_2:40440035-40440054 | Msa0251210:intron | 45.0% |
| ! | ATGCCAGTCATTGTTGCTTC+AGG | + | chr2_2:40440180-40440199 | None:intergenic | 45.0% |
| !!! | AAATAACAATTAATATTTTT+GGG | + | chr2_2:40438844-40438863 | None:intergenic | 5.0% |
| !!! | ATCTTTAATTTTTTTTTTTT+TGG | - | chr2_2:40438880-40438899 | Msa0251210:intron | 5.0% |
| !! | AAAAATTTAATAATCTAATA+AGG | - | chr2_2:40440352-40440371 | Msa0251210:five_prime_UTR | 5.0% |
| CTACCGTTAGAGAGAGAGAG+AGG | + | chr2_2:40436478-40436497 | None:intergenic | 50.0% | |
| CGATCCTTGACTAGTGAGTG+TGG | - | chr2_2:40436986-40437005 | Msa0251210:CDS | 50.0% | |
| GGTTGCCTTGAATCTGGATG+TGG | - | chr2_2:40437691-40437710 | Msa0251210:CDS | 50.0% | |
| TCCAGCCACATCCAGATTCA+AGG | + | chr2_2:40437699-40437718 | None:intergenic | 50.0% | |
| GTTGAGATGGGTGGATGCAA+AGG | - | chr2_2:40437877-40437896 | Msa0251210:intron | 50.0% | |
| AAGGGGAGGGTAGCAATAAG+TGG | + | chr2_2:40438214-40438233 | None:intergenic | 50.0% | |
| TATTGCTACCCTCCCCTTAG+AGG | - | chr2_2:40438216-40438235 | Msa0251210:intron | 50.0% | |
| TGATTGGTGCGACCATCTCA+GGG | + | chr2_2:40438361-40438380 | None:intergenic | 50.0% | |
| TTGATTGGTGCGACCATCTC+AGG | + | chr2_2:40438362-40438381 | None:intergenic | 50.0% | |
| AGAATACAGTGGTGCACCCA+AGG | - | chr2_2:40439540-40439559 | Msa0251210:intron | 50.0% | |
| CAAAAGCGAGCCCTTGTGAT+CGG | - | chr2_2:40439740-40439759 | Msa0251210:intron | 50.0% | |
| TATTCCCCCTCCGATCACAA+GGG | + | chr2_2:40439753-40439772 | None:intergenic | 50.0% | |
| CACATCTATGTGAGGAGAGG+AGG | - | chr2_2:40439991-40440010 | Msa0251210:intron | 50.0% | |
| ! | AGGGCACTTGGGGATGAAAT+TGG | - | chr2_2:40440045-40440064 | Msa0251210:intron | 50.0% |
| GGACCTGAAGCAACAATGAC+TGG | - | chr2_2:40440174-40440193 | Msa0251210:intron | 50.0% | |
| AAGCAGAAGCAGTGATGCAC+TGG | + | chr2_2:40440218-40440237 | None:intergenic | 50.0% | |
| TGTGGAGAACTCTGGACTCT+TGG | - | chr2_2:40440582-40440601 | Msa0251210:five_prime_UTR | 50.0% | |
| GTGGAGAACTCTGGACTCTT+GGG | - | chr2_2:40440583-40440602 | Msa0251210:five_prime_UTR | 50.0% | |
| GCCTTGAATCTGGATGTGGC+TGG | - | chr2_2:40437695-40437714 | Msa0251210:CDS | 55.0% | |
| ACACATGCACGACCCTGAGA+TGG | - | chr2_2:40438346-40438365 | Msa0251210:intron | 55.0% | |
| TGGACTATGGTAGCTGGAGG+AGG | - | chr2_2:40439353-40439372 | Msa0251210:CDS | 55.0% | |
| TACAGTGGTGCACCCAAGGA+AGG | - | chr2_2:40439544-40439563 | Msa0251210:intron | 55.0% | |
| TGCAAGACCTCGCCTTCCTT+GGG | + | chr2_2:40439559-40439578 | None:intergenic | 55.0% | |
| TGCGCAACTGCGAATCCTGA+TGG | - | chr2_2:40439716-40439735 | Msa0251210:intron | 55.0% | |
| !! | AGGGCTCGCTTTTGTCCATC+AGG | + | chr2_2:40439734-40439753 | None:intergenic | 55.0% |
| CTATTCCCCCTCCGATCACA+AGG | + | chr2_2:40439754-40439773 | None:intergenic | 55.0% | |
| GGAGGTCCCAACTACCAAAG+AGG | - | chr2_2:40440009-40440028 | Msa0251210:intron | 55.0% | |
| !! | CATGTGTCGGTGTCGGACAC+CGG | - | chr2_2:40438415-40438434 | Msa0251210:intron | 60.0% |
| CTGCAAGACCTCGCCTTCCT+TGG | + | chr2_2:40439560-40439579 | None:intergenic | 60.0% | |
| AAGCGAGCCCTTGTGATCGG+AGG | - | chr2_2:40439743-40439762 | Msa0251210:intron | 60.0% | |
| AGCGAGCCCTTGTGATCGGA+GGG | - | chr2_2:40439744-40439763 | Msa0251210:intron | 60.0% | |
| TGGTGCACCCAAGGAAGGCG+AGG | - | chr2_2:40439549-40439568 | Msa0251210:intron | 65.0% | |
| GCGAGCCCTTGTGATCGGAG+GGG | - | chr2_2:40439745-40439764 | Msa0251210:intron | 65.0% | |
| CGAGCCCTTGTGATCGGAGG+GGG | - | chr2_2:40439746-40439765 | Msa0251210:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 40436420 | 40440624 | 40436420 | ID=Msa0251210;Name=Msa0251210 |
| chr2_2 | mRNA | 40436420 | 40440624 | 40436420 | ID=Msa0251210-mRNA-1;Parent=Msa0251210;Name=Msa0251210-mRNA-1;_AED=0.10;_eAED=0.10;_QI=129|1|1|1|0.84|0.78|14|385|423 |
| chr2_2 | exon | 40436420 | 40436876 | 40436420 | ID=Msa0251210-mRNA-1:exon:12691;Parent=Msa0251210-mRNA-1 |
| chr2_2 | exon | 40436964 | 40437080 | 40436964 | ID=Msa0251210-mRNA-1:exon:12690;Parent=Msa0251210-mRNA-1 |
| chr2_2 | exon | 40437212 | 40437328 | 40437212 | ID=Msa0251210-mRNA-1:exon:12689;Parent=Msa0251210-mRNA-1 |
| chr2_2 | exon | 40437444 | 40437545 | 40437444 | ID=Msa0251210-mRNA-1:exon:12688;Parent=Msa0251210-mRNA-1 |
| chr2_2 | exon | 40437644 | 40437739 | 40437644 | ID=Msa0251210-mRNA-1:exon:12687;Parent=Msa0251210-mRNA-1 |
| chr2_2 | exon | 40437969 | 40438050 | 40437969 | ID=Msa0251210-mRNA-1:exon:12686;Parent=Msa0251210-mRNA-1 |
| chr2_2 | exon | 40438220 | 40438334 | 40438220 | ID=Msa0251210-mRNA-1:exon:12685;Parent=Msa0251210-mRNA-1 |
| chr2_2 | exon | 40438447 | 40438498 | 40438447 | ID=Msa0251210-mRNA-1:exon:12684;Parent=Msa0251210-mRNA-1 |
| chr2_2 | exon | 40438807 | 40438887 | 40438807 | ID=Msa0251210-mRNA-1:exon:12683;Parent=Msa0251210-mRNA-1 |
| chr2_2 | exon | 40439006 | 40439167 | 40439006 | ID=Msa0251210-mRNA-1:exon:12682;Parent=Msa0251210-mRNA-1 |
| chr2_2 | exon | 40439290 | 40439466 | 40439290 | ID=Msa0251210-mRNA-1:exon:12681;Parent=Msa0251210-mRNA-1 |
| chr2_2 | exon | 40440246 | 40440385 | 40440246 | ID=Msa0251210-mRNA-1:exon:12680;Parent=Msa0251210-mRNA-1 |
| chr2_2 | exon | 40440516 | 40440535 | 40440516 | ID=Msa0251210-mRNA-1:exon:12679;Parent=Msa0251210-mRNA-1 |
| chr2_2 | exon | 40440557 | 40440624 | 40440557 | ID=Msa0251210-mRNA-1:exon:12678;Parent=Msa0251210-mRNA-1 |
| chr2_2 | five_prime_UTR | 40440557 | 40440624 | 40440557 | ID=Msa0251210-mRNA-1:five_prime_utr;Parent=Msa0251210-mRNA-1 |
| chr2_2 | five_prime_UTR | 40440516 | 40440535 | 40440516 | ID=Msa0251210-mRNA-1:five_prime_utr;Parent=Msa0251210-mRNA-1 |
| chr2_2 | five_prime_UTR | 40440345 | 40440385 | 40440345 | ID=Msa0251210-mRNA-1:five_prime_utr;Parent=Msa0251210-mRNA-1 |
| chr2_2 | CDS | 40440246 | 40440344 | 40440246 | ID=Msa0251210-mRNA-1:cds;Parent=Msa0251210-mRNA-1 |
| chr2_2 | CDS | 40439290 | 40439466 | 40439290 | ID=Msa0251210-mRNA-1:cds;Parent=Msa0251210-mRNA-1 |
| chr2_2 | CDS | 40439006 | 40439167 | 40439006 | ID=Msa0251210-mRNA-1:cds;Parent=Msa0251210-mRNA-1 |
| chr2_2 | CDS | 40438807 | 40438887 | 40438807 | ID=Msa0251210-mRNA-1:cds;Parent=Msa0251210-mRNA-1 |
| chr2_2 | CDS | 40438447 | 40438498 | 40438447 | ID=Msa0251210-mRNA-1:cds;Parent=Msa0251210-mRNA-1 |
| chr2_2 | CDS | 40438220 | 40438334 | 40438220 | ID=Msa0251210-mRNA-1:cds;Parent=Msa0251210-mRNA-1 |
| chr2_2 | CDS | 40437969 | 40438050 | 40437969 | ID=Msa0251210-mRNA-1:cds;Parent=Msa0251210-mRNA-1 |
| chr2_2 | CDS | 40437644 | 40437739 | 40437644 | ID=Msa0251210-mRNA-1:cds;Parent=Msa0251210-mRNA-1 |
| chr2_2 | CDS | 40437444 | 40437545 | 40437444 | ID=Msa0251210-mRNA-1:cds;Parent=Msa0251210-mRNA-1 |
| chr2_2 | CDS | 40437212 | 40437328 | 40437212 | ID=Msa0251210-mRNA-1:cds;Parent=Msa0251210-mRNA-1 |
| chr2_2 | CDS | 40436964 | 40437080 | 40436964 | ID=Msa0251210-mRNA-1:cds;Parent=Msa0251210-mRNA-1 |
| chr2_2 | CDS | 40436805 | 40436876 | 40436805 | ID=Msa0251210-mRNA-1:cds;Parent=Msa0251210-mRNA-1 |
| chr2_2 | three_prime_UTR | 40436420 | 40436804 | 40436420 | ID=Msa0251210-mRNA-1:three_prime_utr;Parent=Msa0251210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
