AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0130850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130850 MtrunA17_Chr1g0199321 98.730 630 8 0 1 630 1 630 0.0 1269
Msa0130850 MtrunA17_Chr4g0031431 54.808 624 268 2 12 621 6 629 0.0 657
Msa0130850 MtrunA17_Chr7g0237931 48.479 559 267 6 66 618 62 605 1.05e-163 481
Msa0130850 MtrunA17_Chr4g0044411 45.114 614 299 7 38 622 46 650 2.21e-163 482
Msa0130850 MtrunA17_Chr7g0248251 42.351 621 346 5 9 622 29 644 6.48e-156 463
Msa0130850 MtrunA17_Chr5g0437411 35.575 669 349 11 21 620 30 685 5.31e-123 380
Msa0130850 MtrunA17_Chr2g0284461 35.987 628 358 13 33 622 56 677 2.15e-98 316
Msa0130850 MtrunA17_Chr7g0234671 40.050 397 211 10 235 621 73 452 4.14e-84 271
Msa0130850 MtrunA17_Chr7g0275081 39.344 427 234 11 207 620 38 452 1.33e-80 262
Msa0130850 MtrunA17_Chr3g0106931 56.089 271 118 1 345 615 553 822 3.11e-79 268
Msa0130850 MtrunA17_Chr3g0106931 63.291 79 28 1 244 321 229 307 4.63e-27 117
Msa0130850 MtrunA17_Chr4g0059201 32.072 608 381 13 40 619 100 703 1.37e-78 264
Msa0130850 MtrunA17_Chr4g0013091 32.025 637 393 17 15 620 71 698 5.35e-76 257
Msa0130850 MtrunA17_Chr2g0290151 47.163 282 149 0 345 626 175 456 9.39e-71 236
Msa0130850 MtrunA17_Chr3g0134761 45.714 280 148 1 345 620 51 330 4.01e-69 228
Msa0130850 MtrunA17_Chr1g0189811 38.875 391 223 8 242 623 58 441 3.48e-68 229
Msa0130850 MtrunA17_Chr1g0152561 43.841 276 155 0 345 620 61 336 6.71e-68 225
Msa0130850 MtrunA17_Chr7g0261371 48.718 273 139 1 343 615 512 783 2.60e-66 232
Msa0130850 MtrunA17_Chr7g0261371 30.284 317 194 8 17 322 16 316 8.01e-28 119
Msa0130850 MtrunA17_Chr1g0183781 48.339 271 139 1 345 615 440 709 6.34e-66 229
Msa0130850 MtrunA17_Chr1g0183781 29.355 310 194 7 15 314 14 308 1.79e-25 111
Msa0130850 MtrunA17_Chr1g0198984 90.179 112 11 0 260 371 1 112 1.10e-65 211
Msa0130850 MtrunA17_Chr3g0117851 27.375 621 371 14 41 627 56 630 5.16e-59 209
Msa0130850 MtrunA17_Chr5g0413681 30.032 616 386 14 40 619 59 665 5.37e-59 210
Msa0130850 MtrunA17_Chr3g0122721 29.493 434 243 10 245 619 278 707 1.74e-49 184
Msa0130850 MtrunA17_Chr1g0199031 73.043 115 14 1 421 535 17 114 4.91e-44 153
Msa0130850 MtrunA17_Chr8g0377151 29.128 436 250 10 248 626 283 716 8.44e-44 167
Msa0130850 MtrunA17_Chr2g0280671 31.053 380 236 9 249 619 17 379 1.93e-42 157
Msa0130850 MtrunA17_Chr1g0199011 87.500 80 10 0 132 211 52 131 5.27e-41 145
Msa0130850 MtrunA17_Chr3g0118001 36.462 277 171 2 346 619 212 486 9.10e-41 155
Msa0130850 MtrunA17_Chr4g0044631 29.648 398 256 11 247 630 14 401 5.88e-34 134
Msa0130850 MtrunA17_Chr4g0048811 29.243 383 194 11 247 619 5 320 3.15e-31 124
Msa0130850 MtrunA17_Chr8g0373031 24.550 444 270 10 248 628 276 717 3.77e-31 129
Msa0130850 MtrunA17_Chr5g0400971 27.300 337 224 6 247 577 67 388 6.54e-31 126
Msa0130850 MtrunA17_Chr5g0429231 35.231 281 175 5 345 619 34 313 2.20e-30 122
Msa0130850 MtrunA17_Chr3g0110121 26.301 346 225 8 247 573 36 370 4.99e-29 120
Msa0130850 MtrunA17_Chr6g0451581 31.746 252 167 2 367 615 260 509 8.96e-29 120
Msa0130850 MtrunA17_Chr1g0152291 27.701 361 232 9 247 598 45 385 7.04e-28 117
Msa0130850 MtrunA17_Chr1g0199021 84.211 57 9 0 223 279 1 57 8.57e-27 103
Msa0130850 MtrunA17_Chr2g0322021 32.143 308 188 9 247 542 6 304 9.00e-27 113
Msa0130850 MtrunA17_Chr3g0137061 31.293 294 188 6 343 624 108 399 2.18e-26 113
Msa0130850 MtrunA17_Chr7g0267501 30.034 293 175 9 247 517 8 292 6.23e-26 110
Msa0130850 MtrunA17_Chr3g0129811 27.151 372 231 11 247 596 83 436 6.50e-26 111
Msa0130850 MtrunA17_Chr8g0384041 27.586 377 225 13 247 596 10 365 6.59e-26 110
Msa0130850 MtrunA17_Chr5g0420471 27.336 428 241 15 246 627 24 427 8.95e-26 110
Msa0130850 MtrunA17_Chr1g0177281 29.653 317 159 12 251 519 11 311 2.58e-25 109
Msa0130850 MtrunA17_Chr1g0149941 31.206 282 180 6 355 624 184 463 3.11e-25 110
Msa0130850 MtrunA17_Chr1g0198971 90.385 52 5 0 132 183 52 103 3.34e-25 100
Msa0130850 MtrunA17_Chr1g0177261 29.245 318 161 12 251 520 11 312 4.25e-25 108
Msa0130850 MtrunA17_Chr6g0479261 27.251 411 259 13 246 625 24 425 6.44e-25 108
Msa0130850 MtrunA17_Chr1g0177271 29.260 311 170 9 251 520 11 312 5.67e-24 105
Msa0130850 MtrunA17_Chr5g0434171 25.189 397 259 14 247 618 35 418 9.26e-23 101
Msa0130850 MtrunA17_Chr5g0404311 53.333 75 35 0 248 322 274 348 2.54e-22 102
Msa0130850 MtrunA17_Chr8g0353271 30.820 305 186 13 339 624 2 300 1.26e-20 93.6
Msa0130850 MtrunA17_Chr2g0278251 44.068 118 62 3 392 507 5 120 8.27e-20 86.7
Msa0130850 MtrunA17_Chr6g0449461 28.873 284 187 7 346 619 3 281 1.01e-18 87.8
Msa0130850 MtrunA17_Chr5g0435041 28.571 266 134 9 377 629 92 314 6.14e-18 86.3
Msa0130850 MtrunA17_Chr1g0188041 21.519 553 361 13 67 566 68 600 3.47e-17 85.9
Msa0130850 MtrunA17_Chr1g0177301 37.324 142 77 4 247 386 6 137 7.20e-17 83.2
Msa0130850 MtrunA17_Chr3g0144071 24.912 285 176 9 242 514 26 284 2.72e-16 82.8
Msa0130850 MtrunA17_Chr1g0196911 38.356 146 79 6 248 391 507 643 2.20e-15 80.5
Msa0130850 MtrunA17_Chr4g0025501 34.459 148 85 4 247 391 6 144 2.93e-15 78.2
Msa0130850 MtrunA17_Chr7g0275961 28.727 275 169 8 245 515 252 503 1.66e-14 77.4
Msa0130850 MtrunA17_Chr8g0390311 46.053 76 40 1 248 322 396 471 2.45e-14 77.0
Msa0130850 MtrunA17_Chr5g0412171 44.776 67 37 0 247 313 732 798 8.66e-14 74.7
Msa0130850 MtrunA17_Chr1g0202971 50.000 66 33 0 248 313 649 714 1.17e-13 74.3
Msa0130850 MtrunA17_Chr7g0259851 30.097 206 142 2 345 548 185 390 2.13e-13 73.6
Msa0130850 MtrunA17_Chr7g0215741 35.417 144 90 1 374 514 588 731 2.69e-13 73.6
Msa0130850 MtrunA17_Chr7g0247831 45.714 70 38 0 248 317 827 896 6.53e-13 72.0
Msa0130850 MtrunA17_Chr1g0205751 30.412 194 133 2 345 536 198 391 7.58e-13 71.6
Msa0130850 MtrunA17_Chr5g0394261 31.183 186 126 2 345 528 195 380 9.31e-13 71.2
Msa0130850 MtrunA17_Chr8g0346441 27.273 297 177 8 251 517 263 550 1.59e-12 70.9
Msa0130850 MtrunA17_Chr7g0214471 43.056 72 38 2 244 313 592 662 2.46e-12 70.5
Msa0130850 MtrunA17_Chr4g0070941 40.506 79 46 1 235 313 679 756 1.37e-11 67.8
Msa0130850 MtrunA17_Chr2g0328101 42.857 84 46 2 234 316 728 810 1.58e-11 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130850 AT3G54850.1 66.612 614 204 1 11 623 12 625 0.0 814
Msa0130850 AT3G46510.1 52.373 632 283 4 5 621 2 630 0.0 640
Msa0130850 AT2G28830.1 51.273 550 245 8 92 621 17 563 6.99e-179 520
Msa0130850 AT1G71020.1 45.866 641 302 12 2 620 3 620 3.00e-159 471
Msa0130850 AT1G23030.1 44.234 633 313 11 2 620 3 609 1.84e-153 456
Msa0130850 AT5G42340.1 42.139 617 330 6 15 622 60 658 3.86e-147 441
Msa0130850 AT1G71020.2 57.545 391 162 3 234 620 82 472 7.00e-142 421
Msa0130850 AT3G07360.1 42.257 381 209 8 248 620 75 452 4.97e-88 282
Msa0130850 AT1G29340.1 35.428 573 338 12 80 622 119 689 2.13e-84 280
Msa0130850 AT2G23140.3 54.513 277 125 1 343 619 352 627 2.13e-82 272
Msa0130850 AT2G23140.3 61.644 73 28 0 250 322 44 116 9.84e-27 115
Msa0130850 AT2G23140.5 54.513 277 125 1 343 619 352 627 2.13e-82 272
Msa0130850 AT2G23140.5 61.644 73 28 0 250 322 44 116 9.84e-27 115
Msa0130850 AT2G23140.2 49.062 320 161 2 300 619 499 816 1.54e-81 274
Msa0130850 AT2G23140.2 29.167 312 179 11 33 328 26 311 5.52e-27 117
Msa0130850 AT2G23140.4 49.062 320 161 2 300 619 499 816 1.54e-81 274
Msa0130850 AT2G23140.4 29.167 312 179 11 33 328 26 311 5.52e-27 117
Msa0130850 AT2G23140.1 49.062 320 161 2 300 619 502 819 1.54e-81 274
Msa0130850 AT2G23140.1 29.167 312 179 11 33 328 29 314 6.00e-27 117
Msa0130850 AT5G01830.1 32.485 668 381 21 1 630 19 654 8.66e-76 255
Msa0130850 AT3G01400.1 44.403 268 149 0 353 620 73 340 1.33e-67 224
Msa0130850 AT5G67340.1 46.154 286 152 2 335 619 413 697 1.64e-65 228
Msa0130850 AT5G67340.2 46.154 286 152 2 335 619 413 697 1.64e-65 228
Msa0130850 AT5G58680.1 39.228 311 185 4 314 620 29 339 6.26e-62 210
Msa0130850 AT4G16490.1 46.127 284 151 1 345 626 185 468 6.86e-61 210
Msa0130850 AT3G54790.2 48.327 269 137 2 348 615 441 708 1.83e-57 206
Msa0130850 AT3G54790.2 27.062 388 260 6 247 615 202 585 1.93e-27 118
Msa0130850 AT3G54790.2 29.952 207 141 4 344 548 520 724 6.41e-14 75.5
Msa0130850 AT3G54790.2 29.891 184 125 4 394 574 404 586 8.51e-13 72.0
Msa0130850 AT3G54790.3 48.327 269 137 2 348 615 477 744 4.39e-57 206
Msa0130850 AT3G54790.3 27.062 388 260 6 247 615 238 621 3.67e-27 117
Msa0130850 AT3G54790.3 29.952 207 141 4 344 548 556 760 7.28e-14 75.5
Msa0130850 AT3G54790.3 29.891 184 125 4 394 574 440 622 1.20e-12 71.6
Msa0130850 AT3G54790.1 48.327 269 137 2 348 615 477 744 4.39e-57 206
Msa0130850 AT3G54790.1 27.062 388 260 6 247 615 238 621 3.67e-27 117
Msa0130850 AT3G54790.1 29.952 207 141 4 344 548 556 760 7.28e-14 75.5
Msa0130850 AT3G54790.1 29.891 184 125 4 394 574 440 622 1.20e-12 71.6
Msa0130850 AT1G60190.1 27.607 652 433 16 6 622 19 666 1.55e-56 203
Msa0130850 AT5G18320.1 36.524 397 218 13 244 621 68 449 1.65e-55 195
Msa0130850 AT3G07360.5 38.438 320 186 8 309 620 1 317 6.31e-54 187
Msa0130850 AT3G07360.3 38.438 320 186 8 309 620 1 317 6.31e-54 187
Msa0130850 AT3G07360.9 38.438 320 186 8 309 620 1 317 6.31e-54 187
Msa0130850 AT3G07360.6 38.438 320 186 8 309 620 1 317 6.31e-54 187
Msa0130850 AT3G07360.2 38.438 320 186 8 309 620 1 317 6.31e-54 187
Msa0130850 AT3G07360.8 38.438 320 186 8 309 620 1 317 6.31e-54 187
Msa0130850 AT3G07360.10 38.438 320 186 8 309 620 1 317 6.31e-54 187
Msa0130850 AT3G07360.7 38.438 320 186 8 309 620 1 317 6.31e-54 187
Msa0130850 AT3G07360.4 38.438 320 186 8 309 620 1 317 6.31e-54 187
Msa0130850 AT1G27910.1 30.645 434 245 10 246 625 278 709 7.54e-49 182
Msa0130850 AT1G10560.1 26.947 642 401 18 33 622 52 677 1.47e-47 178
Msa0130850 AT4G21350.1 33.067 375 236 8 247 618 5 367 1.30e-45 166
Msa0130850 AT5G18330.1 30.211 427 247 15 216 620 48 445 1.12e-41 157
Msa0130850 AT1G24330.1 27.655 452 267 10 233 625 261 711 1.78e-38 152
Msa0130850 AT1G24330.2 27.655 452 267 10 233 625 261 711 1.78e-38 152
Msa0130850 AT5G65200.1 34.754 305 183 4 335 625 213 515 3.55e-38 149
Msa0130850 AT5G62560.1 36.264 273 167 3 348 615 239 509 1.46e-36 144
Msa0130850 AT5G62560.1 23.077 364 246 9 241 574 25 384 1.36e-11 67.8
Msa0130850 AT5G18340.1 29.505 444 276 16 198 618 25 454 7.64e-36 140
Msa0130850 AT5G40140.1 34.256 289 183 4 346 629 231 517 7.75e-35 139
Msa0130850 AT1G49780.1 31.235 413 231 11 247 626 14 406 1.04e-34 137
Msa0130850 AT3G19380.1 31.078 399 222 11 247 624 14 380 4.56e-34 135
Msa0130850 AT1G67530.3 31.378 341 172 13 30 322 21 347 1.16e-30 127
Msa0130850 AT1G67530.2 31.378 341 172 13 30 322 21 347 1.91e-30 127
Msa0130850 AT1G67530.2 27.675 271 186 6 357 619 438 706 6.33e-20 94.7
Msa0130850 AT1G67530.1 31.378 341 172 13 30 322 21 347 1.91e-30 127
Msa0130850 AT1G67530.1 27.675 271 186 6 357 619 438 706 6.33e-20 94.7
Msa0130850 AT1G67530.4 31.378 341 172 13 30 322 21 347 1.91e-30 127
Msa0130850 AT1G67530.4 27.675 271 186 6 357 619 438 706 6.33e-20 94.7
Msa0130850 AT3G47820.1 34.286 280 174 5 348 619 210 487 3.02e-30 125
Msa0130850 AT5G65920.1 27.990 393 236 11 245 617 58 423 6.00e-30 123
Msa0130850 AT5G65920.2 27.990 393 236 11 245 617 58 423 6.00e-30 123
Msa0130850 AT4G31890.3 34.106 302 182 8 342 630 142 439 7.76e-30 124
Msa0130850 AT4G31890.2 34.106 302 182 8 342 630 142 439 7.76e-30 124
Msa0130850 AT4G31890.1 34.106 302 182 8 342 630 142 439 7.76e-30 124
Msa0130850 AT4G12710.1 34.602 289 180 6 348 627 50 338 1.20e-28 119
Msa0130850 AT3G49810.1 28.238 386 240 11 247 617 64 427 1.52e-28 119
Msa0130850 AT5G37490.1 26.478 389 261 10 247 618 31 411 2.76e-28 118
Msa0130850 AT2G35930.1 30.671 313 187 10 247 542 12 311 2.23e-27 115
Msa0130850 AT1G66160.1 25.510 392 258 15 247 621 33 407 1.36e-25 110
Msa0130850 AT2G25130.1 32.841 271 164 8 366 622 132 398 1.05e-23 105
Msa0130850 AT5G64660.1 27.792 403 230 13 247 619 10 381 1.72e-23 103
Msa0130850 AT1G08315.1 30.201 298 185 12 342 618 6 301 6.99e-23 100
Msa0130850 AT3G52450.1 25.822 426 257 14 247 624 7 421 1.04e-21 99.0
Msa0130850 AT5G09800.1 25.203 369 234 13 247 596 11 356 3.48e-21 97.1
Msa0130850 AT3G03440.1 28.966 290 195 6 345 626 66 352 4.21e-20 93.6
Msa0130850 AT3G18710.1 21.827 394 278 10 247 619 12 396 3.69e-19 90.9
Msa0130850 AT5G14510.1 30.634 284 184 8 348 623 5 283 5.37e-17 83.2
Msa0130850 AT1G66160.2 23.469 392 250 16 247 621 33 391 8.16e-17 83.6
Msa0130850 AT4G36550.1 44.737 76 42 0 246 321 218 293 5.95e-16 82.0
Msa0130850 AT2G45920.1 35.897 156 83 6 172 318 249 396 1.19e-15 79.7
Msa0130850 AT1G01680.1 44.928 69 38 0 249 317 235 303 1.68e-14 75.1
Msa0130850 AT3G11840.1 52.778 72 32 2 247 317 10 80 1.85e-14 76.6
Msa0130850 AT3G61390.4 29.651 172 85 6 183 329 198 358 3.38e-14 75.1
Msa0130850 AT3G60350.1 32.022 178 116 2 374 546 590 767 4.05e-14 76.6
Msa0130850 AT3G60350.2 32.022 178 116 2 374 546 590 767 4.05e-14 76.6
Msa0130850 AT1G01660.2 43.421 76 41 1 243 318 496 569 5.26e-14 75.5
Msa0130850 AT3G61390.2 29.651 172 85 6 183 329 273 433 5.53e-14 75.1
Msa0130850 AT1G01660.1 43.421 76 41 1 243 318 495 568 5.68e-14 75.5
Msa0130850 AT2G44900.1 33.728 169 107 2 374 537 599 767 1.64e-13 74.7
Msa0130850 AT2G44900.2 33.728 169 107 2 374 537 599 767 1.64e-13 74.7
Msa0130850 AT1G20780.1 24.685 397 253 14 247 603 23 413 3.75e-13 73.2
Msa0130850 AT1G20780.2 24.685 397 253 14 247 603 23 413 3.75e-13 73.2
Msa0130850 AT1G20780.3 24.685 397 253 14 247 603 23 413 3.75e-13 73.2
Msa0130850 AT1G56040.1 46.479 71 36 1 240 310 348 416 5.29e-13 72.0
Msa0130850 AT5G65500.2 47.761 67 35 0 247 313 723 789 1.57e-12 71.2
Msa0130850 AT5G65500.1 47.761 67 35 0 247 313 715 781 1.67e-12 71.2
Msa0130850 AT1G56030.1 46.032 63 34 0 248 310 324 386 3.52e-12 68.9
Msa0130850 AT5G13060.1 29.798 198 137 2 345 540 227 424 6.22e-12 69.3
Msa0130850 AT2G45910.2 43.836 73 39 1 241 313 759 829 9.87e-12 68.6
Msa0130850 AT2G45910.1 43.836 73 39 1 241 313 759 829 9.87e-12 68.6
Msa0130850 AT5G57035.1 38.750 80 49 0 248 327 709 788 2.33e-11 67.4
Msa0130850 AT5G50900.1 29.353 201 134 5 333 527 131 329 3.25e-11 66.6
Msa0130850 AT1G68940.3 24.699 332 217 8 251 573 250 557 7.01e-11 66.2
Msa0130850 AT1G68940.2 27.826 230 136 6 251 473 303 509 8.04e-11 65.9
Msa0130850 AT1G68940.1 27.826 230 136 6 251 473 303 509 8.24e-11 65.9

Find 145 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTATAACCTCAACTAAAAT+AGG 0.132718 1_3:+61262326 None:intergenic
TGAATGACATTTGTTCTTAA+AGG 0.137385 1_3:-61261997 Msa0130850:three_prime_UTR
CTGCAACTCCCTTGCTTCTT+TGG 0.167120 1_3:+61263016 None:intergenic
TTTCTACGTGTGTTTGAAAA+TGG 0.177732 1_3:-61266383 Msa0130850:exon
GATTCAATCAGGGAGATTTC+TGG 0.219471 1_3:-61266316 Msa0130850:CDS
TTTAGGAAAGAGAGTGAAAT+TGG 0.226482 1_3:+61266573 None:intergenic
AACTGCTATCAAAGCTTTAT+TGG 0.228618 1_3:-61262954 Msa0130850:CDS
TGAAGAGTCTGATTGGTTTA+TGG 0.249287 1_3:-61263063 Msa0130850:CDS
TCCTTTGTTACTCTCGTTGA+TGG 0.253869 1_3:+61262742 None:intergenic
TGTTACTTGAAAGACAATTT+AGG 0.264563 1_3:+61266556 None:intergenic
TGCTGGTGAGCTCCGGTTGC+TGG 0.264800 1_3:-61262891 Msa0130850:CDS
TTCAAAACATCTACAATATC+TGG 0.273503 1_3:+61262695 None:intergenic
GAGCTTTGTTCAGATTTAAA+AGG 0.294345 1_3:+61266439 None:intergenic
CTTCAGGGATTATCAGAAAA+TGG 0.310426 1_3:-61262194 Msa0130850:CDS
GAATGACATTTGTTCTTAAA+GGG 0.315283 1_3:-61261996 Msa0130850:three_prime_UTR
AGCAAATTCTGTTTGAGCTT+TGG 0.316577 1_3:+61263638 None:intergenic
CCTTTGCTAGTTTCAATTGC+AGG 0.330384 1_3:+61262237 None:intergenic
TGAATCTTTGAGGGTTGCTT+TGG 0.331165 1_3:-61266161 Msa0130850:CDS
TGGAGCAGAAGAAGCACTTC+AGG 0.351787 1_3:-61262210 Msa0130850:CDS
CGAAAATCATCTGGGATTAC+AGG 0.356127 1_3:+61263333 None:intergenic
GTCGTTTGGCTGATTCAATC+AGG 0.358543 1_3:-61266327 Msa0130850:CDS
CAGGGAGATTTCTGGGTTGC+CGG 0.364680 1_3:-61266308 Msa0130850:CDS
AACGTTTGTAAGAAGATGTA+TGG 0.367485 1_3:-61266277 Msa0130850:CDS
AGACTCTTCAAAACGTAGTT+AGG 0.375832 1_3:+61263076 None:intergenic
TCATGGGAGTAAGCTTTATC+AGG 0.393424 1_3:-61266107 Msa0130850:intron
TTCATCAGTTCGAGAGATAT+AGG 0.393884 1_3:+61263306 None:intergenic
ATTCAATCAGGGAGATTTCT+GGG 0.394094 1_3:-61266315 Msa0130850:CDS
TGACCGGTTGAGACGATTAC+AGG 0.398865 1_3:+61263279 None:intergenic
GGCTATGGTTGTGGGTCGTT+TGG 0.400292 1_3:-61266341 Msa0130850:CDS
TGAAACATTCTCGTTCTCAT+AGG 0.402456 1_3:+61263371 None:intergenic
GCTATAATGACAATCCTTGC+AGG 0.409994 1_3:-61262392 Msa0130850:CDS
CGACCCACAACCATAGCCTT+TGG 0.411693 1_3:+61266346 None:intergenic
CATTTCTCTTGGCCAGCAAC+CGG 0.412479 1_3:+61262879 None:intergenic
CTCACGGTTGCGTGGTGATC+CGG 0.413042 1_3:+61262301 None:intergenic
TCCTTTGTTTGAGGAATTGA+AGG 0.413739 1_3:-61266224 Msa0130850:CDS
GTCCACTGAATTACACGAAT+TGG 0.417527 1_3:-61263496 Msa0130850:CDS
ATCAGAGGAAGTTCAAGAAC+AGG 0.429116 1_3:-61263835 Msa0130850:intron
CAAAGTAACTTTATAAGAGC+CGG 0.431128 1_3:+61262572 None:intergenic
TCCTTTGATACGATTTATGA+AGG 0.431714 1_3:-61262447 Msa0130850:CDS
GATAGAGCTAAGAGAAAAGC+TGG 0.432820 1_3:-61262167 Msa0130850:CDS
TTTAATCTATGTATTTATCA+AGG 0.434426 1_3:-61262506 Msa0130850:CDS
GATGAGAACAAAGTTGCAAT+AGG 0.435327 1_3:-61262611 Msa0130850:CDS
AGTTGCAGAACAAAGAAATC+TGG 0.441575 1_3:-61263001 Msa0130850:CDS
TCGGTTATCTGCATTTCTCT+TGG 0.444128 1_3:+61262868 None:intergenic
ATAGGACACCGAAAATCATC+TGG 0.444428 1_3:+61263324 None:intergenic
CTTCTCAAGTCCGTGAATCA+TGG 0.447074 1_3:-61266124 Msa0130850:CDS
TCATAGTTCAAATATAGATA+TGG 0.447160 1_3:-61262063 Msa0130850:three_prime_UTR
TTCTCATAGGTATCAACCTC+AGG 0.450223 1_3:+61263384 None:intergenic
TGCTGATTTACAACTAGACT+TGG 0.455398 1_3:-61263619 Msa0130850:CDS
TTAGTTGAGGTTATACGAAC+CGG 0.456126 1_3:-61262320 Msa0130850:CDS
TTGCTGTCCTTCCTTCATGA+TGG 0.458588 1_3:+61262369 None:intergenic
GAATCCAAAGGCTATGGTTG+TGG 0.460327 1_3:-61266350 Msa0130850:CDS
TTCTACGTGTGTTTGAAAAT+GGG 0.461064 1_3:-61266382 Msa0130850:exon
GTATAACCTCAACTAAAATA+GGG 0.461180 1_3:+61262327 None:intergenic
TTCCTTCATGATGGCCTGCA+AGG 0.462779 1_3:+61262378 None:intergenic
TTTACATGTCACAGGCTTTG+CGG 0.464322 1_3:-61263944 Msa0130850:intron
TCAAAACGTAGTTAGGAGTA+AGG 0.468306 1_3:+61263083 None:intergenic
ACCGCATGCTCCTGAGTTCG+AGG 0.468410 1_3:+61262785 None:intergenic
TTAGATCATTCATAGTCCTC+AGG 0.469633 1_3:+61263526 None:intergenic
ACCTCAACTAAAATAGGGAT+TGG 0.470796 1_3:+61262332 None:intergenic
TTCCACAGATCCTCGAACTC+AGG 0.479457 1_3:-61262795 Msa0130850:CDS
GAAGGATGCGGGCGGTGGGA+TGG 0.485190 1_3:-61262429 Msa0130850:CDS
GTTGCGTTAGAACATAGAAA+TGG 0.488575 1_3:+61266618 None:intergenic
CATGAAGGAAGGACAGCAAT+TGG 0.491237 1_3:-61262365 Msa0130850:CDS
GGGCGGCTGCTGGTGAGCTC+CGG 0.491475 1_3:-61262898 Msa0130850:CDS
TCTGTCACAATCTGAAAGAC+TGG 0.500337 1_3:+61262976 None:intergenic
AAAGTTGCAATAGGTGCAGC+AGG 0.503040 1_3:-61262602 Msa0130850:CDS
TTTATGAAGGATGCGGGCGG+TGG 0.504174 1_3:-61262434 Msa0130850:CDS
AAGCGGTATTGCTCCTGCTT+CGG 0.508786 1_3:+61262835 None:intergenic
AAGCTTACTCCCATGATTCA+CGG 0.509123 1_3:+61266114 None:intergenic
TGTTCAGATTTAAAAGGTGA+TGG 0.509723 1_3:+61266445 None:intergenic
CGAGTATGTATTGCCGAAGC+AGG 0.513878 1_3:-61262848 Msa0130850:CDS
GATACGATTTATGAAGGATG+CGG 0.516210 1_3:-61262441 Msa0130850:CDS
AAGATGAGAAATTTGGATTG+TGG 0.518104 1_3:+61266496 None:intergenic
GATCCTGTAATCGTCTCAAC+CGG 0.519344 1_3:-61263282 Msa0130850:CDS
TGTAATCGTCTCAACCGGTC+AGG 0.519349 1_3:-61263277 Msa0130850:intron
TTCTCAAGTCCGTGAATCAT+GGG 0.519412 1_3:-61266123 Msa0130850:CDS
AATCCAAAGGCTATGGTTGT+GGG 0.521446 1_3:-61266349 Msa0130850:CDS
TGTATGGGAATTTGATTCGT+AGG 0.524170 1_3:-61266261 Msa0130850:CDS
TAATGATATTGAACAGCAAA+GGG 0.525276 1_3:-61262918 Msa0130850:CDS
AAAGCTAGAGCTGTTAAAGC+CGG 0.526299 1_3:-61262479 Msa0130850:CDS
ATAACAAGCAACGGAGAACT+AGG 0.529713 1_3:-61263471 Msa0130850:CDS
GAACAGCAAAGGGCGGCTGC+TGG 0.530588 1_3:-61262908 Msa0130850:CDS
CTTATAAAGTTACTTTGTGA+AGG 0.532116 1_3:-61262566 Msa0130850:CDS
AGGAAGGACAGCAATTGGTC+AGG 0.536014 1_3:-61262360 Msa0130850:CDS
AGGTGCAGCAGGAGCCATCC+CGG 0.539324 1_3:-61262591 Msa0130850:CDS
GTATGGGAATTTGATTCGTA+GGG 0.540661 1_3:-61266260 Msa0130850:CDS
GTAATGATATTGAACAGCAA+AGG 0.541492 1_3:-61262919 Msa0130850:CDS
GAACTGTTGCAGCGAATCGA+AGG 0.545611 1_3:-61262134 Msa0130850:CDS
ATACGATTTATGAAGGATGC+GGG 0.548943 1_3:-61262440 Msa0130850:CDS
AAAGTAACTTTATAAGAGCC+GGG 0.549044 1_3:+61262573 None:intergenic
CTCCTGAGTTCGAGGATCTG+TGG 0.551751 1_3:+61262793 None:intergenic
TCCTTCAATTCCTCAAACAA+AGG 0.552404 1_3:+61266223 None:intergenic
CTGCTTCGGCAATACATACT+CGG 0.554371 1_3:+61262849 None:intergenic
GGAGCAGAAGAAGCACTTCA+GGG 0.556560 1_3:-61262209 Msa0130850:CDS
AAGCTAGAGCTGTTAAAGCC+GGG 0.558896 1_3:-61262478 Msa0130850:CDS
CAAAACGTAGTTAGGAGTAA+GGG 0.565631 1_3:+61263084 None:intergenic
TTATGAAGGATGCGGGCGGT+GGG 0.567221 1_3:-61262433 Msa0130850:CDS
AACTGTTGCAGCGAATCGAA+GGG 0.569767 1_3:-61262133 Msa0130850:CDS
GACCAATTCGTGTAATTCAG+TGG 0.570216 1_3:+61263494 None:intergenic
ATCCTTGCAGGCCATCATGA+AGG 0.571335 1_3:-61262380 Msa0130850:CDS
GAGCGAGAATCCAAAGGCTA+TGG 0.574636 1_3:-61266356 Msa0130850:CDS
TCCTTCATAAATCGTATCAA+AGG 0.578982 1_3:+61262446 None:intergenic
TACGTGTGTTTGAAAATGGG+TGG 0.582750 1_3:-61266379 Msa0130850:exon
AAGGATTGTGATGAGTCTCT+TGG 0.586282 1_3:-61266205 Msa0130850:CDS
TATCAAAGGAGCAACTATCC+CGG 0.586650 1_3:+61262460 None:intergenic
TTGAAACTAGCAAAGGAACA+TGG 0.590002 1_3:-61262230 Msa0130850:CDS
AACTAAAATAGGGATTGGCT+CGG 0.594552 1_3:+61262337 None:intergenic
TCTCAGAGAAGTTGCACCTG+AGG 0.594729 1_3:-61263542 Msa0130850:CDS
TCGTTTGGCTGATTCAATCA+GGG 0.595220 1_3:-61266326 Msa0130850:CDS
GACAACAAGTCTACGAGAAG+CGG 0.596931 1_3:+61262818 None:intergenic
AAAGTTACACTCGAGAGGCT+AGG 0.597677 1_3:+61262091 None:intergenic
TAACTTTATAAGAGCCGGGA+TGG 0.597754 1_3:+61262577 None:intergenic
ACGTTTGTAAGAAGATGTAT+GGG 0.602477 1_3:-61266276 Msa0130850:CDS
AGAATGTTTCAATTAAGCAC+CGG 0.604626 1_3:-61263359 Msa0130850:CDS
GCAGCATTCTCACGGTTGCG+TGG 0.609043 1_3:+61262293 None:intergenic
GTTGAACTACCAAAGAAGCA+AGG 0.609236 1_3:-61263025 Msa0130850:CDS
CATCTGGGATTACAGGAGAC+CGG 0.612294 1_3:+61263340 None:intergenic
TCCTCGAACTCAGGAGCATG+CGG 0.612420 1_3:-61262786 Msa0130850:CDS
TTGCAGGCCATCATGAAGGA+AGG 0.615941 1_3:-61262376 Msa0130850:CDS
GATTGTGGATAATACCTGAC+CGG 0.618738 1_3:+61263263 None:intergenic
GATGGAGAATACCCAGATGA+GGG 0.619382 1_3:+61266463 None:intergenic
GGTTTATGGTGTGATAGCAA+TGG 0.620008 1_3:-61263049 Msa0130850:CDS
TTGAACTACCAAAGAAGCAA+GGG 0.622309 1_3:-61263024 Msa0130850:CDS
CCTGCAATTGAAACTAGCAA+AGG 0.625998 1_3:-61262237 Msa0130850:CDS
TCCATCAACGAGAGTAACAA+AGG 0.627518 1_3:-61262743 Msa0130850:CDS
AGTTCAAATATAGATATGGT+CGG 0.632146 1_3:-61262059 Msa0130850:three_prime_UTR
AAACAGCAGCAGCATTCTCA+CGG 0.633676 1_3:+61262285 None:intergenic
ACGTGTGTTTGAAAATGGGT+GGG 0.633785 1_3:-61266378 Msa0130850:exon
ATAATAAAGTTACACTCGAG+AGG 0.634199 1_3:+61262086 None:intergenic
TAGGACACCGAAAATCATCT+GGG 0.636004 1_3:+61263325 None:intergenic
ACATGTCACAGGCTTTGCGG+AGG 0.639360 1_3:-61263941 Msa0130850:intron
CTTTGTGAAGGTACTCCAAG+AGG 0.641917 1_3:-61262554 Msa0130850:CDS
TATTTGTTGGAACTTATCTG+CGG 0.643137 1_3:+61263911 None:intergenic
TGATGGAGAATACCCAGATG+AGG 0.644335 1_3:+61266462 None:intergenic
GAATTGGTCATAACAAGCAA+CGG 0.648481 1_3:-61263480 Msa0130850:CDS
CATGGAGGCAAGAGAAAACG+CGG 0.658502 1_3:-61262663 Msa0130850:CDS
CAACAAACTTGAGATATCAG+AGG 0.659687 1_3:-61263850 Msa0130850:CDS
GGGTGGGAGCGAGAATCCAA+AGG 0.667061 1_3:-61266362 Msa0130850:CDS
GTTGCAGCGAATCGAAGGGG+AGG 0.677232 1_3:-61262129 Msa0130850:CDS
TGATATTGAACAGCAAAGGG+CGG 0.681387 1_3:-61262915 Msa0130850:CDS
AAAGGAACTATAGTAAACGC+AGG 0.682325 1_3:-61262725 Msa0130850:CDS
CGTGCTCGCAGAAAATCCTG+AGG 0.685860 1_3:-61263400 Msa0130850:CDS
ACTGTTGCAGCGAATCGAAG+GGG 0.696214 1_3:-61262132 Msa0130850:CDS
CGATTTATGAAGGATGCGGG+CGG 0.720329 1_3:-61262437 Msa0130850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATGATAAATAAAAATT+CGG - chr1_3:61262920-61262939 Msa0130850:CDS 10.0%
!!! ATAAACTTTTAAAAATGTTA+AGG - chr1_3:61266612-61266631 Msa0130850:five_prime_UTR 10.0%
!!! TTAGTTTTTTATTTGATTGA+TGG - chr1_3:61262497-61262516 Msa0130850:CDS 15.0%
!!! AATTTTAGCTTCAAATTTAT+TGG - chr1_3:61262713-61262732 Msa0130850:CDS 15.0%
!! TTTAATCTATGTATTTATCA+AGG - chr1_3:61266014-61266033 Msa0130850:intron 15.0%
!! TGATAAAAAGATGAGAAATT+TGG + chr1_3:61262034-61262053 None:intergenic 20.0%
!!! TTTTTTTTGTTTATCCCTTT+TGG - chr1_3:61262452-61262471 Msa0130850:CDS 20.0%
!! TTTCAATTAAAACACCAAAA+GGG + chr1_3:61262469-61262488 None:intergenic 20.0%
!!! ATTGACTTTTACATAATGTT+TGG - chr1_3:61262601-61262620 Msa0130850:CDS 20.0%
!! TAGTAAAGTTATAATCAACT+CGG + chr1_3:61262655-61262674 None:intergenic 20.0%
!! AAAGTGAATTGAATATAAAG+TGG + chr1_3:61262775-61262794 None:intergenic 20.0%
!!! ATATTCAATTCACTTTTAGT+CGG - chr1_3:61262779-61262798 Msa0130850:CDS 20.0%
!!! AAGGGTAACATAAATTTTAT+AGG + chr1_3:61262976-61262995 None:intergenic 20.0%
!! GATTGTATTATATAGTCTTT+GGG - chr1_3:61263007-61263026 Msa0130850:CDS 20.0%
!! CTATTATGTAATAAAGAGTA+TGG - chr1_3:61263357-61263376 Msa0130850:CDS 20.0%
!! ATGGTAAATAAAGATTTGAT+AGG - chr1_3:61263389-61263408 Msa0130850:CDS 20.0%
!!! ATTGTAGATGTTTTGAAAAA+CGG - chr1_3:61265831-61265850 Msa0130850:intron 20.0%
!! TCATAGTTCAAATATAGATA+TGG - chr1_3:61266457-61266476 Msa0130850:five_prime_UTR 20.0%
!!! CTTTTAATAAATGTTATGTG+AGG - chr1_3:61266563-61266582 Msa0130850:five_prime_UTR 20.0%
!! TGTTACTTGAAAGACAATTT+AGG + chr1_3:61261967-61261986 None:intergenic 25.0%
! CTTTCAATTAAAACACCAAA+AGG + chr1_3:61262470-61262489 None:intergenic 25.0%
! TGATGGAGAATTAAAAATTC+AGG - chr1_3:61262514-61262533 Msa0130850:CDS 25.0%
!! ATGTTATGTTCCAATTTTGA+AGG - chr1_3:61262551-61262570 Msa0130850:CDS 25.0%
!! TAAATTTTATAGGCAGTGTT+AGG + chr1_3:61262966-61262985 None:intergenic 25.0%
!!! TATGTTACCCTTCTATTTTT+TGG - chr1_3:61262984-61263003 Msa0130850:CDS 25.0%
!!! ATGTTACCCTTCTATTTTTT+GGG - chr1_3:61262985-61263004 Msa0130850:CDS 25.0%
! TACAATCCCAAAAAATAGAA+GGG + chr1_3:61262994-61263013 None:intergenic 25.0%
! ATACAATCCCAAAAAATAGA+AGG + chr1_3:61262995-61263014 None:intergenic 25.0%
! GGATTGTATTATATAGTCTT+TGG - chr1_3:61263006-61263025 Msa0130850:CDS 25.0%
! TTTCATTTGCTTCAATTCTA+AGG - chr1_3:61263090-61263109 Msa0130850:CDS 25.0%
! ACACACTTCAAATTAAACAT+GGG + chr1_3:61263130-61263149 None:intergenic 25.0%
! TACACACTTCAAATTAAACA+TGG + chr1_3:61263131-61263150 None:intergenic 25.0%
!!! GTTTAATTTGAAGTGTGTAT+TGG - chr1_3:61263132-61263151 Msa0130850:CDS 25.0%
! ATACATACTTGAACAAAGAA+TGG + chr1_3:61263180-61263199 None:intergenic 25.0%
! AATTGAAAGATAACTGCAAA+AGG + chr1_3:61263577-61263596 None:intergenic 25.0%
! GAATTAAAATGCACAAATAG+TGG + chr1_3:61263622-61263641 None:intergenic 25.0%
! AACTTACAGAAGATAGAAAA+GGG + chr1_3:61263644-61263663 None:intergenic 25.0%
!! GGATGCTTAAAGTTTAATTT+CGG - chr1_3:61263920-61263939 Msa0130850:CDS 25.0%
! TAATATAAGAGGAATCAAAG+AGG - chr1_3:61264141-61264160 Msa0130850:intron 25.0%
!! TATATCACCATGTACAATTT+TGG - chr1_3:61264253-61264272 Msa0130850:intron 25.0%
!!! ACGTCTATTTTATTTCTCTT+TGG + chr1_3:61264323-61264342 None:intergenic 25.0%
! AAGAGAAATAAAATAGACGT+AGG - chr1_3:61264323-61264342 Msa0130850:intron 25.0%
! TAGAGAAGAAATAAGAAAGA+GGG + chr1_3:61264432-61264451 None:intergenic 25.0%
!!! CAATTTTTTCGGTTATTTGT+TGG + chr1_3:61264625-61264644 None:intergenic 25.0%
! AACAGTCGGAAAAAAATATA+TGG + chr1_3:61264817-61264836 None:intergenic 25.0%
! TTTCATATGTCTGCAAAATA+AGG + chr1_3:61265341-61265360 None:intergenic 25.0%
! TAATGATATTGAACAGCAAA+GGG - chr1_3:61265602-61265621 Msa0130850:intron 25.0%
! TTCAAAACATCTACAATATC+TGG + chr1_3:61265828-61265847 None:intergenic 25.0%
!! CTTATAAAGTTACTTTGTGA+AGG - chr1_3:61265954-61265973 Msa0130850:intron 25.0%
! GTATAACCTCAACTAAAATA+GGG + chr1_3:61266196-61266215 None:intergenic 25.0%
! AGTTCAAATATAGATATGGT+CGG - chr1_3:61266461-61266480 Msa0130850:five_prime_UTR 25.0%
! TGAATGACATTTGTTCTTAA+AGG - chr1_3:61266523-61266542 Msa0130850:five_prime_UTR 25.0%
! GAATGACATTTGTTCTTAAA+GGG - chr1_3:61266524-61266543 Msa0130850:five_prime_UTR 25.0%
TTTAGGAAAGAGAGTGAAAT+TGG + chr1_3:61261950-61261969 None:intergenic 30.0%
TGTGGTATAGAGTTGAAAAA+TGG + chr1_3:61262009-61262028 None:intergenic 30.0%
AAGATGAGAAATTTGGATTG+TGG + chr1_3:61262027-61262046 None:intergenic 30.0%
! TTTTTATCATTTCCCTCATC+TGG - chr1_3:61262045-61262064 Msa0130850:three_prime_UTR 30.0%
! TTTTATCATTTCCCTCATCT+GGG - chr1_3:61262046-61262065 Msa0130850:three_prime_UTR 30.0%
TGTTCAGATTTAAAAGGTGA+TGG + chr1_3:61262078-61262097 None:intergenic 30.0%
!! GAGCTTTGTTCAGATTTAAA+AGG + chr1_3:61262084-61262103 None:intergenic 30.0%
TTTCTACGTGTGTTTGAAAA+TGG - chr1_3:61262137-61262156 Msa0130850:CDS 30.0%
TTCTACGTGTGTTTGAAAAT+GGG - chr1_3:61262138-61262157 Msa0130850:CDS 30.0%
!! TTACAAACGTTTTGACATTC+CGG + chr1_3:61262234-61262253 None:intergenic 30.0%
AACGTTTGTAAGAAGATGTA+TGG - chr1_3:61262243-61262262 Msa0130850:CDS 30.0%
ACGTTTGTAAGAAGATGTAT+GGG - chr1_3:61262244-61262263 Msa0130850:CDS 30.0%
! TTGAAGCTTTTGAATCTTTG+AGG - chr1_3:61262349-61262368 Msa0130850:CDS 30.0%
! TGAAGCTTTTGAATCTTTGA+GGG - chr1_3:61262350-61262369 Msa0130850:CDS 30.0%
!! TTATGTTCCAATTTTGAAGG+AGG - chr1_3:61262554-61262573 Msa0130850:CDS 30.0%
AACATTACCTCCTTCAAAAT+TGG + chr1_3:61262564-61262583 None:intergenic 30.0%
! GGAGGTAATGTTGATTATAA+AGG - chr1_3:61262572-61262591 Msa0130850:CDS 30.0%
TAAAGTTATAATCAACTCGG+AGG + chr1_3:61262652-61262671 None:intergenic 30.0%
!!! AGATGCAAATGCATTGATTT+TGG - chr1_3:61262886-61262905 Msa0130850:CDS 30.0%
!!! GATGCAAATGCATTGATTTT+GGG - chr1_3:61262887-61262906 Msa0130850:CDS 30.0%
AAATATTCAAGCTCAATTGC+AGG - chr1_3:61263204-61263223 Msa0130850:intron 30.0%
ACAACACCAATTTAAGCAAT+CGG + chr1_3:61263235-61263254 None:intergenic 30.0%
AGAACACATGTTACAAATTC+AGG + chr1_3:61263260-61263279 None:intergenic 30.0%
ATTTGTAACATGTGTTCTTG+CGG - chr1_3:61263262-61263281 Msa0130850:intron 30.0%
! ATGTAATAAAGAGTATGGTG+AGG - chr1_3:61263362-61263381 Msa0130850:CDS 30.0%
CAACTTACAGAAGATAGAAA+AGG + chr1_3:61263645-61263664 None:intergenic 30.0%
TTTCTATCTTCTGTAAGTTG+CGG - chr1_3:61263645-61263664 Msa0130850:CDS 30.0%
TGTCGTATGTATCAAACATA+TGG - chr1_3:61263727-61263746 Msa0130850:intron 30.0%
TCTCTAATCTGCAAAGTAAA+CGG - chr1_3:61263866-61263885 Msa0130850:CDS 30.0%
AACCTATGAACTGAATAGAA+TGG - chr1_3:61263899-61263918 Msa0130850:CDS 30.0%
ATCCATTCTATTCAGTTCAT+AGG + chr1_3:61263904-61263923 None:intergenic 30.0%
AAAAGTCTATTCCTGAAATC+AGG - chr1_3:61263948-61263967 Msa0130850:intron 30.0%
TGAAAGAAAAAAACTTGCAC+AGG + chr1_3:61263979-61263998 None:intergenic 30.0%
! CTCTTTTCCAAAATTGTACA+TGG + chr1_3:61264263-61264282 None:intergenic 30.0%
! ATCTCTCTTTTAAACCAAAC+AGG - chr1_3:61264373-61264392 Msa0130850:intron 30.0%
GTAGAGAAGAAATAAGAAAG+AGG + chr1_3:61264433-61264452 None:intergenic 30.0%
TACCAAACATAGTGTAAAAG+AGG - chr1_3:61264450-61264469 Msa0130850:intron 30.0%
ACCAAACATAGTGTAAAAGA+GGG - chr1_3:61264451-61264470 Msa0130850:intron 30.0%
! TATTTGTTGGAACTTATCTG+CGG + chr1_3:61264612-61264631 None:intergenic 30.0%
!!! CAATGCAGCTTCAATTTTTT+CGG + chr1_3:61264636-61264655 None:intergenic 30.0%
CTGAAAGAGATTAAAACAGT+CGG + chr1_3:61264831-61264850 None:intergenic 30.0%
!! GTCTTTCAGTTTTCTAAGAA+GGG + chr1_3:61265098-61265117 None:intergenic 30.0%
!! AGTCTTTCAGTTTTCTAAGA+AGG + chr1_3:61265099-61265118 None:intergenic 30.0%
AGAATGTTTCAATTAAGCAC+CGG - chr1_3:61265161-61265180 Msa0130850:intron 30.0%
ATATGTCTGCAAAATAAGGT+AGG + chr1_3:61265337-61265356 None:intergenic 30.0%
AAAGATCCTGCATTCAAAAA+TGG - chr1_3:61265358-61265377 Msa0130850:intron 30.0%
! AACTGCTATCAAAGCTTTAT+TGG - chr1_3:61265566-61265585 Msa0130850:intron 30.0%
GTAATGATATTGAACAGCAA+AGG - chr1_3:61265601-61265620 Msa0130850:intron 30.0%
AAAGTAACTTTATAAGAGCC+GGG + chr1_3:61265950-61265969 None:intergenic 30.0%
CAAAGTAACTTTATAAGAGC+CGG + chr1_3:61265951-61265970 None:intergenic 30.0%
TCCTTTGATACGATTTATGA+AGG - chr1_3:61266073-61266092 Msa0130850:intron 30.0%
TCCTTCATAAATCGTATCAA+AGG + chr1_3:61266077-61266096 None:intergenic 30.0%
CGTATAACCTCAACTAAAAT+AGG + chr1_3:61266197-61266216 None:intergenic 30.0%
ATAATAAAGTTACACTCGAG+AGG + chr1_3:61266437-61266456 None:intergenic 30.0%
GTTGCGTTAGAACATAGAAA+TGG + chr1_3:61261905-61261924 None:intergenic 35.0%
ACACACGTAGAAAAAGTCAA+AGG + chr1_3:61262130-61262149 None:intergenic 35.0%
ATTCAATCAGGGAGATTTCT+GGG - chr1_3:61262205-61262224 Msa0130850:CDS 35.0%
! TGTATGGGAATTTGATTCGT+AGG - chr1_3:61262259-61262278 Msa0130850:CDS 35.0%
! GTATGGGAATTTGATTCGTA+GGG - chr1_3:61262260-61262279 Msa0130850:CDS 35.0%
! TCCTTTGTTTGAGGAATTGA+AGG - chr1_3:61262296-61262315 Msa0130850:CDS 35.0%
TCCTTCAATTCCTCAAACAA+AGG + chr1_3:61262300-61262319 None:intergenic 35.0%
GAACATGTTCACGTAAAAGT+GGG + chr1_3:61262743-61262762 None:intergenic 35.0%
TGAACATGTTCACGTAAAAG+TGG + chr1_3:61262744-61262763 None:intergenic 35.0%
TGACTTTGAACGAGTTTACT+GGG + chr1_3:61262816-61262835 None:intergenic 35.0%
TTGACTTTGAACGAGTTTAC+TGG + chr1_3:61262817-61262836 None:intergenic 35.0%
TAACAGATAAAGCGAGTGTT+TGG + chr1_3:61262859-61262878 None:intergenic 35.0%
CTCGCTTTATCTGTTATAGT+AGG - chr1_3:61262863-61262882 Msa0130850:CDS 35.0%
! TTTTCTCCATATGCAGAGAA+AGG + chr1_3:61263069-61263088 None:intergenic 35.0%
CAACACCAATTTAAGCAATC+GGG + chr1_3:61263234-61263253 None:intergenic 35.0%
CAATTGGATATTCCAGCAAT+TGG + chr1_3:61263293-61263312 None:intergenic 35.0%
GGTCTCTATCATTAAGCAAT+TGG + chr1_3:61263309-61263328 None:intergenic 35.0%
! AAGAGTATGGTGAGGTTATA+TGG - chr1_3:61263370-61263389 Msa0130850:CDS 35.0%
GATTTGATAGGATGCTTAGT+TGG - chr1_3:61263401-61263420 Msa0130850:CDS 35.0%
CCTCACTGTTTATACTACTA+AGG + chr1_3:61263440-61263459 None:intergenic 35.0%
CCTTAGTAGTATAAACAGTG+AGG - chr1_3:61263437-61263456 Msa0130850:CDS 35.0%
TAGTAGTATAAACAGTGAGG+TGG - chr1_3:61263440-61263459 Msa0130850:CDS 35.0%
AGTAGTATAAACAGTGAGGT+GGG - chr1_3:61263441-61263460 Msa0130850:CDS 35.0%
GATTATTGCTAGGACCATTA+TGG - chr1_3:61263485-61263504 Msa0130850:CDS 35.0%
CTTTCTTTGCCTAACCATAA+TGG + chr1_3:61263502-61263521 None:intergenic 35.0%
! AGAGTGTTCTCTTTCTTTGA+AGG - chr1_3:61263520-61263539 Msa0130850:CDS 35.0%
!! TTCTTTGAAGGAGTTTTGCT+CGG - chr1_3:61263532-61263551 Msa0130850:CDS 35.0%
TAAGATTCATTGAAAGTCGC+AGG + chr1_3:61263786-61263805 None:intergenic 35.0%
GCGACTTTCAATGAATCTTA+AGG - chr1_3:61263786-61263805 Msa0130850:intron 35.0%
AGAAAAACTGATGACCACAT+TGG + chr1_3:61263844-61263863 None:intergenic 35.0%
AGAGAGAGACCAAATATTGT+GGG + chr1_3:61264350-61264369 None:intergenic 35.0%
AAGAGAGAGACCAAATATTG+TGG + chr1_3:61264351-61264370 None:intergenic 35.0%
! CTTTTAAACCAAACAGGAGA+AGG - chr1_3:61264379-61264398 Msa0130850:intron 35.0%
! TCCCTCTTTTACACTATGTT+TGG + chr1_3:61264455-61264474 None:intergenic 35.0%
TTCAGATGCTATATGCTTTC+TGG - chr1_3:61264487-61264506 Msa0130850:intron 35.0%
!! ATGCTATATGCTTTCTGGTT+CGG - chr1_3:61264492-61264511 Msa0130850:intron 35.0%
!!! TTCGGTTTTGTTTACCAAAC+AGG - chr1_3:61264510-61264529 Msa0130850:intron 35.0%
!! ATTGTTGCTTTACATGTCAC+AGG - chr1_3:61264568-61264587 Msa0130850:intron 35.0%
CAACAAACTTGAGATATCAG+AGG - chr1_3:61264670-61264689 Msa0130850:intron 35.0%
!!! CTGTTTTTGCCAAGGTTAAA+GGG - chr1_3:61264764-61264783 Msa0130850:intron 35.0%
AGCAAATTCTGTTTGAGCTT+TGG + chr1_3:61264885-61264904 None:intergenic 35.0%
!! TGCTGATTTACAACTAGACT+TGG - chr1_3:61264901-61264920 Msa0130850:intron 35.0%
!! TTTTGAGTATAGCAGGATCA+GGG + chr1_3:61264955-61264974 None:intergenic 35.0%
TTAGATCATTCATAGTCCTC+AGG + chr1_3:61264997-61265016 None:intergenic 35.0%
GAATTGGTCATAACAAGCAA+CGG - chr1_3:61265040-61265059 Msa0130850:intron 35.0%
!! TTTTCTAAGAAGGGATGAGA+CGG + chr1_3:61265089-61265108 None:intergenic 35.0%
TGAAACATTCTCGTTCTCAT+AGG + chr1_3:61265152-61265171 None:intergenic 35.0%
! CTGTAATCCCAGATGATTTT+CGG - chr1_3:61265188-61265207 Msa0130850:intron 35.0%
TTCATCAGTTCGAGAGATAT+AGG + chr1_3:61265217-61265236 None:intergenic 35.0%
GAACAATGTTTCGCACAAAA+AGG + chr1_3:61265282-61265301 None:intergenic 35.0%
!!! ATCAAGCCATTTTTGAATGC+AGG + chr1_3:61265367-61265386 None:intergenic 35.0%
ATTCAAAAATGGCTTGATGC+TGG - chr1_3:61265369-61265388 Msa0130850:intron 35.0%
!! AAAGTGTCTGCTGTGTTTTA+GGG + chr1_3:61265407-61265426 None:intergenic 35.0%
!!! AAAAGTGTCTGCTGTGTTTT+AGG + chr1_3:61265408-61265427 None:intergenic 35.0%
CAAAACGTAGTTAGGAGTAA+GGG + chr1_3:61265439-61265458 None:intergenic 35.0%
TCAAAACGTAGTTAGGAGTA+AGG + chr1_3:61265440-61265459 None:intergenic 35.0%
AGACTCTTCAAAACGTAGTT+AGG + chr1_3:61265447-61265466 None:intergenic 35.0%
!!! TACGTTTTGAAGAGTCTGAT+TGG - chr1_3:61265450-61265469 Msa0130850:intron 35.0%
!! TGAAGAGTCTGATTGGTTTA+TGG - chr1_3:61265457-61265476 Msa0130850:intron 35.0%
TTGAACTACCAAAGAAGCAA+GGG - chr1_3:61265496-61265515 Msa0130850:intron 35.0%
AGTTGCAGAACAAAGAAATC+TGG - chr1_3:61265519-61265538 Msa0130850:intron 35.0%
AAAGGAACTATAGTAAACGC+AGG - chr1_3:61265795-61265814 Msa0130850:intron 35.0%
!!! TGTTTTGAAAAACGGAAGCA+TGG - chr1_3:61265839-61265858 Msa0130850:intron 35.0%
GATGAGAACAAAGTTGCAAT+AGG - chr1_3:61265909-61265928 Msa0130850:intron 35.0%
GATACGATTTATGAAGGATG+CGG - chr1_3:61266079-61266098 Msa0130850:intron 35.0%
ATACGATTTATGAAGGATGC+GGG - chr1_3:61266080-61266099 Msa0130850:intron 35.0%
!! AACTAAAATAGGGATTGGCT+CGG + chr1_3:61266186-61266205 None:intergenic 35.0%
ACCTCAACTAAAATAGGGAT+TGG + chr1_3:61266191-61266210 None:intergenic 35.0%
TTAGTTGAGGTTATACGAAC+CGG - chr1_3:61266200-61266219 Msa0130850:CDS 35.0%
TTGAAACTAGCAAAGGAACA+TGG - chr1_3:61266290-61266309 Msa0130850:CDS 35.0%
CTTCAGGGATTATCAGAAAA+TGG - chr1_3:61266326-61266345 Msa0130850:CDS 35.0%
TACGTGTGTTTGAAAATGGG+TGG - chr1_3:61262141-61262160 Msa0130850:CDS 40.0%
ACGTGTGTTTGAAAATGGGT+GGG - chr1_3:61262142-61262161 Msa0130850:CDS 40.0%
AATCCAAAGGCTATGGTTGT+GGG - chr1_3:61262171-61262190 Msa0130850:CDS 40.0%
! TCGTTTGGCTGATTCAATCA+GGG - chr1_3:61262194-61262213 Msa0130850:CDS 40.0%
GATTCAATCAGGGAGATTTC+TGG - chr1_3:61262204-61262223 Msa0130850:CDS 40.0%
!! GCTTTTGAGTCCTTTGTTTG+AGG - chr1_3:61262287-61262306 Msa0130850:CDS 40.0%
AAGGATTGTGATGAGTCTCT+TGG - chr1_3:61262315-61262334 Msa0130850:CDS 40.0%
! TGAATCTTTGAGGGTTGCTT+TGG - chr1_3:61262359-61262378 Msa0130850:CDS 40.0%
TTCTCAAGTCCGTGAATCAT+GGG - chr1_3:61262397-61262416 Msa0130850:CDS 40.0%
AAGCTTACTCCCATGATTCA+CGG + chr1_3:61262409-61262428 None:intergenic 40.0%
! TCATGGGAGTAAGCTTTATC+AGG - chr1_3:61262413-61262432 Msa0130850:CDS 40.0%
!! AAAGCGAGTGTTTGGTTCTA+CGG + chr1_3:61262851-61262870 None:intergenic 40.0%
! AAGGTACAGGTAGAAAGCAT+TGG + chr1_3:61263050-61263069 None:intergenic 40.0%
GAACACCCGATTGCTTAAAT+TGG - chr1_3:61263226-61263245 Msa0130850:intron 40.0%
ATGATAGAGACCTGAATGTG+AGG - chr1_3:61263317-61263336 Msa0130850:CDS 40.0%
TGATAGAGACCTGAATGTGA+GGG - chr1_3:61263318-61263337 Msa0130850:CDS 40.0%
ATGTGAGGGATAAGGGAAAA+AGG - chr1_3:61263332-61263351 Msa0130850:CDS 40.0%
TGTGAGGGATAAGGGAAAAA+GGG - chr1_3:61263333-61263352 Msa0130850:CDS 40.0%
TGAGGTGGGTAAGTTGTAAT+GGG - chr1_3:61263455-61263474 Msa0130850:CDS 40.0%
! GGTAAGTTGTAATGGGAATG+CGG - chr1_3:61263462-61263481 Msa0130850:CDS 40.0%
! GTAAGTTGTAATGGGAATGC+GGG - chr1_3:61263463-61263482 Msa0130850:CDS 40.0%
TTGCTAGGACCATTATGGTT+AGG - chr1_3:61263490-61263509 Msa0130850:CDS 40.0%
TGAACGCACACTTCAAATTC+AGG + chr1_3:61263707-61263726 None:intergenic 40.0%
TTCTTCATGCATGACCAATG+TGG - chr1_3:61263827-61263846 Msa0130850:intron 40.0%
GAAAAAAACTTGCACAGGAC+AGG + chr1_3:61263974-61263993 None:intergenic 40.0%
GTGCACATATGAAAGAAGTC+TGG - chr1_3:61264069-61264088 Msa0130850:intron 40.0%
GAGCAACTAAGATACCTGTT+TGG + chr1_3:61264527-61264546 None:intergenic 40.0%
TTTACATGTCACAGGCTTTG+CGG - chr1_3:61264576-61264595 Msa0130850:intron 40.0%
ATCAGAGGAAGTTCAAGAAC+AGG - chr1_3:61264685-61264704 Msa0130850:intron 40.0%
!!! GCTGTTTTTGCCAAGGTTAA+AGG - chr1_3:61264763-61264782 Msa0130850:intron 40.0%
TTGATGCTTCCCTTTAACCT+TGG + chr1_3:61264776-61264795 None:intergenic 40.0%
!! CTTTTGAGTATAGCAGGATC+AGG + chr1_3:61264956-61264975 None:intergenic 40.0%
!! GAGAGTCTTTTGAGTATAGC+AGG + chr1_3:61264962-61264981 None:intergenic 40.0%
GTCCACTGAATTACACGAAT+TGG - chr1_3:61265024-61265043 Msa0130850:intron 40.0%
GACCAATTCGTGTAATTCAG+TGG + chr1_3:61265029-61265048 None:intergenic 40.0%
ATAACAAGCAACGGAGAACT+AGG - chr1_3:61265049-61265068 Msa0130850:intron 40.0%
TTCTCATAGGTATCAACCTC+AGG + chr1_3:61265139-61265158 None:intergenic 40.0%
! CGAAAATCATCTGGGATTAC+AGG + chr1_3:61265190-61265209 None:intergenic 40.0%
TAGGACACCGAAAATCATCT+GGG + chr1_3:61265198-61265217 None:intergenic 40.0%
ATAGGACACCGAAAATCATC+TGG + chr1_3:61265199-61265218 None:intergenic 40.0%
GATTGTGGATAATACCTGAC+CGG + chr1_3:61265260-61265279 None:intergenic 40.0%
GTTTCGCACAAAAAGGATTG+TGG + chr1_3:61265275-61265294 None:intergenic 40.0%
TGTGCGAAACATTGTTCTGA+TGG - chr1_3:61265285-61265304 Msa0130850:intron 40.0%
GGTTTATGGTGTGATAGCAA+TGG - chr1_3:61265471-61265490 Msa0130850:intron 40.0%
GTTGAACTACCAAAGAAGCA+AGG - chr1_3:61265495-61265514 Msa0130850:intron 40.0%
TCTGTCACAATCTGAAAGAC+TGG + chr1_3:61265547-61265566 None:intergenic 40.0%
TGATATTGAACAGCAAAGGG+CGG - chr1_3:61265605-61265624 Msa0130850:intron 40.0%
TCGGTTATCTGCATTTCTCT+TGG + chr1_3:61265655-61265674 None:intergenic 40.0%
TCCATCAACGAGAGTAACAA+AGG - chr1_3:61265777-61265796 Msa0130850:intron 40.0%
TCCTTTGTTACTCTCGTTGA+TGG + chr1_3:61265781-61265800 None:intergenic 40.0%
! TTTGAAAAACGGAAGCATGG+AGG - chr1_3:61265842-61265861 Msa0130850:intron 40.0%
TAACTTTATAAGAGCCGGGA+TGG + chr1_3:61265946-61265965 None:intergenic 40.0%
AAAGCTAGAGCTGTTAAAGC+CGG - chr1_3:61266041-61266060 Msa0130850:intron 40.0%
TATCAAAGGAGCAACTATCC+CGG + chr1_3:61266063-61266082 None:intergenic 40.0%
GCTATAATGACAATCCTTGC+AGG - chr1_3:61266128-61266147 Msa0130850:CDS 40.0%
!!! GCCAATCCCTATTTTAGTTG+AGG - chr1_3:61266187-61266206 Msa0130850:CDS 40.0%
!! TGTTTTGTGGTTGGTATGCA+CGG - chr1_3:61266253-61266272 Msa0130850:CDS 40.0%
! CCTTTGCTAGTTTCAATTGC+AGG + chr1_3:61266286-61266305 None:intergenic 40.0%
CCTGCAATTGAAACTAGCAA+AGG - chr1_3:61266283-61266302 Msa0130850:CDS 40.0%
GATAGAGCTAAGAGAAAAGC+TGG - chr1_3:61266353-61266372 Msa0130850:CDS 40.0%
GATGGAGAATACCCAGATGA+GGG + chr1_3:61262060-61262079 None:intergenic 45.0%
TGATGGAGAATACCCAGATG+AGG + chr1_3:61262061-61262080 None:intergenic 45.0%
GAATCCAAAGGCTATGGTTG+TGG - chr1_3:61262170-61262189 Msa0130850:CDS 45.0%
! GTCGTTTGGCTGATTCAATC+AGG - chr1_3:61262193-61262212 Msa0130850:CDS 45.0%
CTTCTCAAGTCCGTGAATCA+TGG - chr1_3:61262396-61262415 Msa0130850:CDS 45.0%
! CCATATGCAGAGAAAGGTAC+AGG + chr1_3:61263063-61263082 None:intergenic 45.0%
CCTGTACCTTTCTCTGCATA+TGG - chr1_3:61263060-61263079 Msa0130850:CDS 45.0%
CTTGCGGTATATCCAATTGC+TGG - chr1_3:61263278-61263297 Msa0130850:CDS 45.0%
AGACCTGAATGTGAGGGATA+AGG - chr1_3:61263324-61263343 Msa0130850:CDS 45.0%
GACCTGAATGTGAGGGATAA+GGG - chr1_3:61263325-61263344 Msa0130850:CDS 45.0%
TTCCCTTATCCCTCACATTC+AGG + chr1_3:61263330-61263349 None:intergenic 45.0%
GTGAGGGATAAGGGAAAAAG+GGG - chr1_3:61263334-61263353 Msa0130850:CDS 45.0%
GTGAGGTGGGTAAGTTGTAA+TGG - chr1_3:61263454-61263473 Msa0130850:CDS 45.0%
! TTTGAAGGAGTTTTGCTCGG+TGG - chr1_3:61263535-61263554 Msa0130850:CDS 45.0%
! TTGAAGGAGTTTTGCTCGGT+GGG - chr1_3:61263536-61263555 Msa0130850:CDS 45.0%
CTGCAAAGTAAACGGTGCAT+AGG - chr1_3:61263874-61263893 Msa0130850:CDS 45.0%
CCTTCTACTCCATTTCTTCG+CGG - chr1_3:61264295-61264314 Msa0130850:intron 45.0%
!! TCTTTGGAACCGCGAAGAAA+TGG + chr1_3:61264307-61264326 None:intergenic 45.0%
GACGTAGGTCCCACAATATT+TGG - chr1_3:61264338-61264357 Msa0130850:intron 45.0%
GATAAGCTCCTTCTCCTGTT+TGG + chr1_3:61264390-61264409 None:intergenic 45.0%
GAAAGAGGGAAGAGAGAAGT+TGG + chr1_3:61264418-61264437 None:intergenic 45.0%
GATCCTGTAATCGTCTCAAC+CGG - chr1_3:61265238-61265257 Msa0130850:intron 45.0%
CTGCTTCGGCAATACATACT+CGG + chr1_3:61265674-61265693 None:intergenic 45.0%
GACAACAAGTCTACGAGAAG+CGG + chr1_3:61265705-61265724 None:intergenic 45.0%
AAAGTTGCAATAGGTGCAGC+AGG - chr1_3:61265918-61265937 Msa0130850:intron 45.0%
!! CTTTGTGAAGGTACTCCAAG+AGG - chr1_3:61265966-61265985 Msa0130850:intron 45.0%
!!! GCTGCATCTTTTTTGCCTCT+TGG + chr1_3:61265984-61266003 None:intergenic 45.0%
AAGCTAGAGCTGTTAAAGCC+GGG - chr1_3:61266042-61266061 Msa0130850:intron 45.0%
TTGCTGTCCTTCCTTCATGA+TGG + chr1_3:61266154-61266173 None:intergenic 45.0%
CATGAAGGAAGGACAGCAAT+TGG - chr1_3:61266155-61266174 Msa0130850:CDS 45.0%
AAACAGCAGCAGCATTCTCA+CGG + chr1_3:61266238-61266257 None:intergenic 45.0%
!!! AGAATGCTGCTGCTGTTTTG+TGG - chr1_3:61266240-61266259 Msa0130850:CDS 45.0%
!! GTTTTGTGGTTGGTATGCAC+GGG - chr1_3:61266254-61266273 Msa0130850:CDS 45.0%
AACTGTTGCAGCGAATCGAA+GGG - chr1_3:61266387-61266406 Msa0130850:five_prime_UTR 45.0%
AAAGTTACACTCGAGAGGCT+AGG + chr1_3:61266432-61266451 None:intergenic 45.0%
!! TTTATTTATTATAATATAAG+AGG - chr1_3:61264130-61264149 Msa0130850:intron 5.0%
GAGCGAGAATCCAAAGGCTA+TGG - chr1_3:61262164-61262183 Msa0130850:CDS 50.0%
GGGAATGCGGGATTATTGCT+AGG - chr1_3:61263475-61263494 Msa0130850:CDS 50.0%
TCTGTAAGTTGCGGCGATTC+AGG - chr1_3:61263654-61263673 Msa0130850:CDS 50.0%
CCGCGAAGAAATGGAGTAGA+AGG + chr1_3:61264298-61264317 None:intergenic 50.0%
!!! GCAAAGCGCTGTTTTTGCCA+AGG - chr1_3:61264756-61264775 Msa0130850:intron 50.0%
TCTCAGAGAAGTTGCACCTG+AGG - chr1_3:61264978-61264997 Msa0130850:intron 50.0%
! CATCTGGGATTACAGGAGAC+CGG + chr1_3:61265183-61265202 None:intergenic 50.0%
TGACCGGTTGAGACGATTAC+AGG + chr1_3:61265244-61265263 None:intergenic 50.0%
TGTAATCGTCTCAACCGGTC+AGG - chr1_3:61265243-61265262 Msa0130850:intron 50.0%
!!! TGTCTGCTGTGTTTTAGGGC+AGG + chr1_3:61265403-61265422 None:intergenic 50.0%
CTGCAACTCCCTTGCTTCTT+TGG + chr1_3:61265507-61265526 None:intergenic 50.0%
CATTTCTCTTGGCCAGCAAC+CGG + chr1_3:61265644-61265663 None:intergenic 50.0%
CGAGTATGTATTGCCGAAGC+AGG - chr1_3:61265672-61265691 Msa0130850:intron 50.0%
AAGCGGTATTGCTCCTGCTT+CGG + chr1_3:61265688-61265707 None:intergenic 50.0%
TTCCACAGATCCTCGAACTC+AGG - chr1_3:61265725-61265744 Msa0130850:intron 50.0%
CATGGAGGCAAGAGAAAACG+CGG - chr1_3:61265857-61265876 Msa0130850:intron 50.0%
CGATTTATGAAGGATGCGGG+CGG - chr1_3:61266083-61266102 Msa0130850:intron 50.0%
ATCCTTGCAGGCCATCATGA+AGG - chr1_3:61266140-61266159 Msa0130850:CDS 50.0%
TTCCTTCATGATGGCCTGCA+AGG + chr1_3:61266145-61266164 None:intergenic 50.0%
TTGCAGGCCATCATGAAGGA+AGG - chr1_3:61266144-61266163 Msa0130850:CDS 50.0%
AGGAAGGACAGCAATTGGTC+AGG - chr1_3:61266160-61266179 Msa0130850:CDS 50.0%
!!! TGCTGCTGCTGTTTTGTGGT+TGG - chr1_3:61266244-61266263 Msa0130850:CDS 50.0%
!! TGGAGCAGAAGAAGCACTTC+AGG - chr1_3:61266310-61266329 Msa0130850:CDS 50.0%
!! GGAGCAGAAGAAGCACTTCA+GGG - chr1_3:61266311-61266330 Msa0130850:CDS 50.0%
GAACTGTTGCAGCGAATCGA+AGG - chr1_3:61266386-61266405 Msa0130850:exon 50.0%
ACTGTTGCAGCGAATCGAAG+GGG - chr1_3:61266388-61266407 Msa0130850:five_prime_UTR 50.0%
CGACCCACAACCATAGCCTT+TGG + chr1_3:61262177-61262196 None:intergenic 55.0%
GGCTATGGTTGTGGGTCGTT+TGG - chr1_3:61262179-61262198 Msa0130850:CDS 55.0%
! CAGGGAGATTTCTGGGTTGC+CGG - chr1_3:61262212-61262231 Msa0130850:CDS 55.0%
!! AGTTTTGCTCGGTGGGCGTT+AGG - chr1_3:61263543-61263562 Msa0130850:CDS 55.0%
CACAGGACAGGCCTGATTTC+AGG + chr1_3:61263962-61263981 None:intergenic 55.0%
ACATGTCACAGGCTTTGCGG+AGG - chr1_3:61264579-61264598 Msa0130850:intron 55.0%
CGTGCTCGCAGAAAATCCTG+AGG - chr1_3:61265120-61265139 Msa0130850:intron 55.0%
CTCCTGAGTTCGAGGATCTG+TGG + chr1_3:61265730-61265749 None:intergenic 55.0%
! TCCTCGAACTCAGGAGCATG+CGG - chr1_3:61265734-61265753 Msa0130850:intron 55.0%
TTTATGAAGGATGCGGGCGG+TGG - chr1_3:61266086-61266105 Msa0130850:intron 55.0%
TTATGAAGGATGCGGGCGGT+GGG - chr1_3:61266087-61266106 Msa0130850:intron 55.0%
GGGTGGGAGCGAGAATCCAA+AGG - chr1_3:61262158-61262177 Msa0130850:CDS 60.0%
ACCGCATGCTCCTGAGTTCG+AGG + chr1_3:61265738-61265757 None:intergenic 60.0%
CTCACGGTTGCGTGGTGATC+CGG + chr1_3:61266222-61266241 None:intergenic 60.0%
GCAGCATTCTCACGGTTGCG+TGG + chr1_3:61266230-61266249 None:intergenic 60.0%
GTTGCAGCGAATCGAAGGGG+AGG - chr1_3:61266391-61266410 Msa0130850:five_prime_UTR 60.0%
GAACAGCAAAGGGCGGCTGC+TGG - chr1_3:61265612-61265631 Msa0130850:intron 65.0%
TGCTGGTGAGCTCCGGTTGC+TGG - chr1_3:61265629-61265648 Msa0130850:intron 65.0%
AGGTGCAGCAGGAGCCATCC+CGG - chr1_3:61265929-61265948 Msa0130850:intron 65.0%
GAAGGATGCGGGCGGTGGGA+TGG - chr1_3:61266091-61266110 Msa0130850:intron 70.0%
GGGCGGCTGCTGGTGAGCTC+CGG - chr1_3:61265622-61265641 Msa0130850:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 61261888 61266654 61261888 ID=Msa0130850;Name=Msa0130850
chr1_3 mRNA 61261888 61266654 61261888 ID=Msa0130850-mRNA-1;Parent=Msa0130850;Name=Msa0130850-mRNA-1;_AED=0.17;_eAED=0.17;_QI=268|1|1|1|1|1|4|221|630
chr1_3 exon 61261888 61263191 61261888 ID=Msa0130850-mRNA-1:exon:20329;Parent=Msa0130850-mRNA-1
chr1_3 exon 61263278 61263691 61263278 ID=Msa0130850-mRNA-1:exon:20328;Parent=Msa0130850-mRNA-1
chr1_3 exon 61263836 61263952 61263836 ID=Msa0130850-mRNA-1:exon:20327;Parent=Msa0130850-mRNA-1
chr1_3 exon 61266108 61266654 61266108 ID=Msa0130850-mRNA-1:exon:20326;Parent=Msa0130850-mRNA-1
chr1_3 five_prime_UTR 61266387 61266654 61266387 ID=Msa0130850-mRNA-1:five_prime_utr;Parent=Msa0130850-mRNA-1
chr1_3 CDS 61266108 61266386 61266108 ID=Msa0130850-mRNA-1:cds;Parent=Msa0130850-mRNA-1
chr1_3 CDS 61263836 61263952 61263836 ID=Msa0130850-mRNA-1:cds;Parent=Msa0130850-mRNA-1
chr1_3 CDS 61263278 61263691 61263278 ID=Msa0130850-mRNA-1:cds;Parent=Msa0130850-mRNA-1
chr1_3 CDS 61262109 61263191 61262109 ID=Msa0130850-mRNA-1:cds;Parent=Msa0130850-mRNA-1
chr1_3 three_prime_UTR 61261888 61262108 61261888 ID=Msa0130850-mRNA-1:three_prime_utr;Parent=Msa0130850-mRNA-1
Gene Sequence

>Msa0130850

ATGGGTGGGAGCGAGAATCCAAAGGCTATGGTTGTGGGTCGTTTGGCTGATTCAATCAGGGAGATTTCTGGGTTGCCGGAATGTCAAAACGTTTGTAAGAAGATGTATGGGAATTTGATTCGTAGGGTGAAGCTTTTGAGTCCTTTGTTTGAGGAATTGAAGGATTGTGATGAGTCTCTTGGTGATCAAGAGATTGAAGCTTTTGAATCTTTGAGGGTTGCTTTGGATTTGACTATGATTCTTCTCAAGTCCGTGAATCATGGGAGTAAGCTTTATCAGGCTTTGCGGAGGAATGATACCGCAGATAAGTTCCAACAAATAACCGAAAAAATTGAAGCTGCATTGAGTGATATTTCATACAACAAACTTGAGATATCAGAGGAAGTTCAAGAACAGATTGAACTAGTGCACGCTCAGTTCAAAAGAGCCAAAGCTCAAACAGAATTTGCTGATTTACAACTAGACTTGGATATAGCAGTAGCACAGAAAGATAAAGACCCTGATCCTGCTATACTCAAAAGACTCTCAGAGAAGTTGCACCTGAGGACTATGAATGATCTAAAGAAAGAGTCCACTGAATTACACGAATTGGTCATAACAAGCAACGGAGAACTAGGAGACAGTTTTGAAACCGTCTCATCCCTTCTTAGAAAACTGAAAGACTGCGTGCTCGCAGAAAATCCTGAGGTTGATACCTATGAGAACGAGAATGTTTCAATTAAGCACCGGTCTCCTGTAATCCCAGATGATTTTCGGTGTCCTATATCTCTCGAACTGATGAAAGATCCTGTAATCGTCTCAACCGGTCAGACATATGAAAGATCCTGCATTCAAAAATGGCTTGATGCTGGTCACAGAACCTGCCCTAAAACACAGCAGACACTTTTGCATACAGCCCTTACTCCTAACTACGTTTTGAAGAGTCTGATTGGTTTATGGTGTGATAGCAATGGTGTTGAACTACCAAAGAAGCAAGGGAGTTGCAGAACAAAGAAATCTGGAACCAGTCTTTCAGATTGTGACAGAACTGCTATCAAAGCTTTATTGGATAAGCTAACAAGTAATGATATTGAACAGCAAAGGGCGGCTGCTGGTGAGCTCCGGTTGCTGGCCAAGAGAAATGCAGATAACCGAGTATGTATTGCCGAAGCAGGAGCAATACCGCTTCTCGTAGACTTGTTGTCTTCCACAGATCCTCGAACTCAGGAGCATGCGGTTACAGCACTTCTGAATCTTTCCATCAACGAGAGTAACAAAGGAACTATAGTAAACGCAGGAGCTATACCAGATATTGTAGATGTTTTGAAAAACGGAAGCATGGAGGCAAGAGAAAACGCGGCTGCGACTCTCTTTAGTTTATCAGTTCTTGATGAGAACAAAGTTGCAATAGGTGCAGCAGGAGCCATCCCGGCTCTTATAAAGTTACTTTGTGAAGGTACTCCAAGAGGCAAAAAAGATGCAGCTACTGCTATATTTAATCTATGTATTTATCAAGGAAACAAAGCTAGAGCTGTTAAAGCCGGGATAGTTGCTCCTTTGATACGATTTATGAAGGATGCGGGCGGTGGGATGGTTGACGAAGCACTAGCTATAATGACAATCCTTGCAGGCCATCATGAAGGAAGGACAGCAATTGGTCAGGCCGAGCCAATCCCTATTTTAGTTGAGGTTATACGAACCGGATCACCACGCAACCGTGAGAATGCTGCTGCTGTTTTGTGGTTGGTATGCACGGGAGATCTCCTGCAATTGAAACTAGCAAAGGAACATGGAGCAGAAGAAGCACTTCAGGGATTATCAGAAAATGGAACTGATAGAGCTAAGAGAAAAGCTGGAAGTATATTAGAACTGTTGCAGCGAATCGAAGGGGAGGATAGTTTGCAAAATACCTAG
Protein sequence

>Msa0130850

MGGSENPKAMVVGRLADSIREISGLPECQNVCKKMYGNLIRRVKLLSPLFEELKDCDESLGDQEIEAFESLRVALDLTMILLKSVNHGSKLYQALRRNDTADKFQQITEKIEAALSDISYNKLEISEEVQEQIELVHAQFKRAKAQTEFADLQLDLDIAVAQKDKDPDPAILKRLSEKLHLRTMNDLKKESTELHELVITSNGELGDSFETVSSLLRKLKDCVLAENPEVDTYENENVSIKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHRTCPKTQQTLLHTALTPNYVLKSLIGLWCDSNGVELPKKQGSCRTKKSGTSLSDCDRTAIKALLDKLTSNDIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVDLLSSTDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVAIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLCIYQGNKARAVKAGIVAPLIRFMKDAGGGMVDEALAIMTILAGHHEGRTAIGQAEPIPILVEVIRTGSPRNRENAAAVLWLVCTGDLLQLKLAKEHGAEEALQGLSENGTDRAKRKAGSILELLQRIEGEDSLQNT*