AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0336940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336940 MtrunA17_Chr2g0323331 69.003 371 39 6 87 410 5 346 9.05e-165 467
Msa0336940 MtrunA17_Chr2g0323331 52.663 169 60 3 136 304 221 369 2.27e-39 144
Msa0336940 MtrunA17_Chr2g0323351 66.814 226 57 5 1 211 1 223 2.74e-99 296
Msa0336940 MtrunA17_Chr2g0323351 55.882 102 31 4 214 311 137 228 2.62e-15 75.5
Msa0336940 MtrunA17_Chr2g0323351 63.095 84 23 5 302 380 146 226 3.11e-11 63.2
Msa0336940 MtrunA17_Chr4g0022901 50.602 249 85 6 1 212 1 248 2.01e-78 243
Msa0336940 MtrunA17_Chr4g0022931 46.071 280 102 7 1 258 1 253 2.33e-69 220
Msa0336940 MtrunA17_Chr4g0022911 51.980 202 89 3 1 200 1 196 9.19e-68 216
Msa0336940 MtrunA17_Chr2g0323321 91.209 91 8 0 1 91 1 91 1.20e-62 197
Msa0336940 MtrunA17_Chr4g0022881 46.544 217 100 6 1 209 1 209 4.19e-57 187
Msa0336940 MtrunA17_Chr1g0167691 44.541 229 94 5 1 218 1 207 3.22e-55 183
Msa0336940 MtrunA17_Chr1g0187761 46.512 215 93 5 1 209 1 199 8.33e-55 182
Msa0336940 MtrunA17_Chr1g0167661 48.341 211 84 6 1 202 1 195 1.89e-54 181
Msa0336940 MtrunA17_Chr4g0022891 43.860 228 98 9 1 209 1 217 1.31e-53 178
Msa0336940 MtrunA17_Chr2g0281071 65.546 119 39 1 1 117 1 119 4.02e-52 177
Msa0336940 MtrunA17_Chr4g0048511 63.866 119 41 1 1 117 1 119 1.17e-51 177
Msa0336940 MtrunA17_Chr7g0261281 59.259 135 49 2 1 129 1 135 1.47e-50 171
Msa0336940 MtrunA17_Chr7g0274581 63.025 119 43 1 1 118 1 119 1.71e-50 169
Msa0336940 MtrunA17_Chr3g0115821 61.864 118 44 1 1 117 1 118 1.74e-50 173
Msa0336940 MtrunA17_Chr2g0323411 63.559 118 42 1 1 117 1 118 1.71e-49 170
Msa0336940 MtrunA17_Chr6g0453471 63.559 118 42 1 1 117 1 118 4.21e-49 170
Msa0336940 MtrunA17_Chr4g0042671 63.559 118 42 1 1 117 1 118 9.45e-49 171
Msa0336940 MtrunA17_Chr1g0203411 50.980 153 69 2 1 147 1 153 9.56e-49 167
Msa0336940 MtrunA17_Chr7g0217741 63.559 118 42 1 1 117 1 118 1.41e-48 167
Msa0336940 MtrunA17_Chr4g0058631 39.583 240 130 5 6 245 7 231 4.56e-48 167
Msa0336940 MtrunA17_Chr1g0211161 64.486 107 38 0 11 117 13 119 7.09e-48 163
Msa0336940 MtrunA17_Chr4g0057031 61.864 118 44 1 1 117 1 118 9.66e-48 164
Msa0336940 MtrunA17_Chr4g0039971 60.169 118 46 1 1 117 2 119 1.69e-47 166
Msa0336940 MtrunA17_Chr3g0117091 60.169 118 46 1 1 117 1 118 3.70e-47 165
Msa0336940 MtrunA17_Chr1g0193371 53.061 147 59 2 6 152 7 143 4.20e-47 165
Msa0336940 MtrunA17_Chr5g0410961 60.169 118 46 1 1 117 1 118 4.60e-47 164
Msa0336940 MtrunA17_Chr4g0070611 49.112 169 73 2 1 156 1 169 1.04e-46 162
Msa0336940 MtrunA17_Chr8g0349261 63.025 119 41 2 1 116 1 119 1.10e-46 162
Msa0336940 MtrunA17_Chr5g0395281 59.322 118 47 1 1 117 1 118 1.15e-46 162
Msa0336940 MtrunA17_Chr3g0110351 61.864 118 44 1 1 117 1 118 1.95e-46 162
Msa0336940 MtrunA17_Chr7g0228891 60.345 116 45 1 1 115 1 116 3.02e-46 160
Msa0336940 MtrunA17_Chr4g0068061 60.656 122 47 1 1 121 1 122 4.25e-46 162
Msa0336940 MtrunA17_Chr3g0103281 58.621 116 47 1 1 115 1 116 4.54e-46 161
Msa0336940 MtrunA17_Chr5g0434571 61.017 118 45 1 1 117 37 154 5.50e-46 162
Msa0336940 MtrunA17_Chr4g0037141 58.120 117 48 1 1 116 1 117 8.13e-46 159
Msa0336940 MtrunA17_Chr5g0435101 58.120 117 49 0 1 117 1 117 1.26e-45 156
Msa0336940 MtrunA17_Chr8g0346561 59.016 122 49 1 1 121 1 122 2.59e-45 158
Msa0336940 MtrunA17_Chr1g0193801 60.909 110 43 0 6 115 7 116 3.45e-45 160
Msa0336940 MtrunA17_Chr2g0309911 59.459 111 45 0 6 116 6 116 4.94e-45 158
Msa0336940 MtrunA17_Chr8g0342541 58.559 111 46 0 6 116 7 117 5.32e-45 159
Msa0336940 MtrunA17_Chr7g0270891 60.909 110 43 0 6 115 7 116 5.83e-45 159
Msa0336940 MtrunA17_Chr4g0070641 60.345 116 45 1 1 115 1 116 7.28e-45 153
Msa0336940 MtrunA17_Chr3g0131121 58.621 116 47 1 1 115 1 116 1.30e-44 156
Msa0336940 MtrunA17_Chr2g0311221 63.889 108 38 1 3 109 5 112 1.40e-44 157
Msa0336940 MtrunA17_Chr7g0275911 58.621 116 47 1 1 115 1 116 1.74e-44 155
Msa0336940 MtrunA17_Chr8g0342521 57.658 111 47 0 6 116 7 117 2.20e-44 157
Msa0336940 MtrunA17_Chr7g0217221 58.824 119 48 1 1 118 1 119 3.39e-44 154
Msa0336940 MtrunA17_Chr2g0330041 58.559 111 46 0 6 116 7 117 3.48e-44 158
Msa0336940 MtrunA17_Chr5g0417821 62.963 108 40 0 10 117 6 113 7.78e-44 154
Msa0336940 MtrunA17_Chr4g0044421 63.810 105 38 0 13 117 14 118 1.98e-43 150
Msa0336940 MtrunA17_Chr2g0328771 62.162 111 41 1 11 121 20 129 2.30e-43 154
Msa0336940 MtrunA17_Chr3g0121241 58.559 111 46 0 6 116 37 147 2.83e-43 153
Msa0336940 MtrunA17_Chr8g0385321 56.897 116 49 1 1 115 1 116 3.24e-43 153
Msa0336940 MtrunA17_Chr3g0092401 58.475 118 48 1 1 117 2 119 4.28e-43 153
Msa0336940 MtrunA17_Chr6g0452271 55.932 118 51 1 1 117 1 118 6.53e-43 153
Msa0336940 MtrunA17_Chr8g0342481 57.895 114 43 2 6 116 7 118 6.64e-43 155
Msa0336940 MtrunA17_Chr1g0152011 43.114 167 90 4 1 165 1 164 7.11e-43 153
Msa0336940 MtrunA17_Chr1g0151941 53.719 121 54 2 1 119 1 121 1.03e-42 150
Msa0336940 MtrunA17_Chr4g0032401 61.607 112 42 1 8 119 14 124 1.57e-42 152
Msa0336940 MtrunA17_Chr1g0194951 59.483 116 46 1 1 115 1 116 1.57e-42 153
Msa0336940 MtrunA17_Chr5g0400821 52.713 129 58 3 1 126 1 129 2.88e-42 150
Msa0336940 MtrunA17_Chr8g0387421 55.752 113 50 0 6 118 7 119 3.91e-42 150
Msa0336940 MtrunA17_Chr7g0271241 62.745 102 38 0 6 107 7 108 1.24e-41 151
Msa0336940 MtrunA17_Chr3g0088461 61.905 105 40 0 11 115 22 126 1.79e-41 149
Msa0336940 MtrunA17_Chr1g0180391 61.538 104 40 0 11 114 19 122 2.59e-41 146
Msa0336940 MtrunA17_Chr6g0453211 59.091 110 44 1 1 109 1 110 3.06e-41 148
Msa0336940 MtrunA17_Chr1g0203441 60.377 106 42 0 12 117 14 119 4.22e-41 146
Msa0336940 MtrunA17_Chr3g0135311 51.799 139 64 3 1 136 1 139 4.79e-41 148
Msa0336940 MtrunA17_Chr4g0060721 54.918 122 54 1 1 121 2 123 5.09e-41 148
Msa0336940 MtrunA17_Chr4g0028311 54.237 118 52 2 1 116 1 118 5.75e-41 147
Msa0336940 MtrunA17_Chr7g0264641 55.932 118 50 2 1 116 1 118 7.20e-41 146
Msa0336940 MtrunA17_Chr5g0397231 58.824 102 42 0 6 107 7 108 1.02e-40 147
Msa0336940 MtrunA17_Chr1g0209661 56.780 118 50 1 9 125 25 142 1.64e-40 146
Msa0336940 MtrunA17_Chr7g0254411 56.780 118 50 1 1 117 1 118 2.56e-40 146
Msa0336940 MtrunA17_Chr5g0434931 57.009 107 46 0 10 116 34 140 4.22e-40 144
Msa0336940 MtrunA17_Chr5g0434911 54.955 111 50 0 6 116 16 126 4.47e-40 144
Msa0336940 MtrunA17_Chr4g0055981 56.731 104 45 0 11 114 55 158 1.03e-39 142
Msa0336940 MtrunA17_Chr8g0343831 54.237 118 51 1 1 118 1 115 1.84e-39 142
Msa0336940 MtrunA17_Chr1g0186061 60.194 103 41 0 12 114 21 123 5.32e-39 140
Msa0336940 MtrunA17_Chr6g0470971 56.604 106 46 0 12 117 15 120 6.49e-39 141
Msa0336940 MtrunA17_Chr2g0327351 55.856 111 47 2 1 109 1 111 7.03e-39 142
Msa0336940 MtrunA17_Chr7g0228231 57.143 105 45 0 11 115 14 118 3.82e-38 137
Msa0336940 MtrunA17_Chr7g0228991 57.009 107 46 0 10 116 28 134 4.88e-38 138
Msa0336940 MtrunA17_Chr6g0487491 51.587 126 51 3 1 116 1 126 5.95e-38 138
Msa0336940 MtrunA17_Chr4g0054391 55.046 109 47 2 1 107 1 109 7.25e-38 139
Msa0336940 MtrunA17_Chr7g0240821 58.416 101 42 0 15 115 5 105 7.78e-38 136
Msa0336940 MtrunA17_Chr3g0099131 56.731 104 45 0 11 114 41 144 9.64e-38 143
Msa0336940 MtrunA17_Chr5g0434831 57.009 107 46 0 10 116 6 112 1.37e-37 135
Msa0336940 MtrunA17_Chr8g0360111 57.282 103 44 0 9 111 23 125 1.56e-37 137
Msa0336940 MtrunA17_Chr7g0269831 59.483 116 46 1 1 115 1 116 1.73e-37 139
Msa0336940 MtrunA17_Chr6g0450101 52.542 118 53 1 1 115 1 118 1.90e-37 135
Msa0336940 MtrunA17_Chr3g0080861 55.769 104 46 0 11 114 37 140 2.34e-37 142
Msa0336940 MtrunA17_Chr1g0168661 58.252 103 43 0 12 114 22 124 3.04e-37 136
Msa0336940 MtrunA17_Chr5g0434841 56.075 107 47 0 10 116 19 125 3.32e-37 137
Msa0336940 MtrunA17_Chr8g0354661 56.731 104 45 0 11 114 37 140 3.83e-37 142
Msa0336940 MtrunA17_Chr1g0194291 45.625 160 69 3 10 169 20 161 5.44e-37 135
Msa0336940 MtrunA17_Chr1g0154031 54.128 109 50 0 11 119 76 184 1.28e-36 138
Msa0336940 MtrunA17_Chr7g0220341 54.128 109 48 1 10 116 24 132 2.68e-36 134
Msa0336940 MtrunA17_Chr1g0194301 42.138 159 74 2 11 169 33 173 3.65e-36 134
Msa0336940 MtrunA17_Chr4g0072751 54.054 111 49 2 1 109 1 111 3.68e-36 135
Msa0336940 MtrunA17_Chr2g0327821 45.522 134 70 1 11 144 6 136 1.32e-34 128
Msa0336940 MtrunA17_Chr2g0322521 58.095 105 44 0 10 114 28 132 3.44e-34 131
Msa0336940 MtrunA17_Chr4g0042611 61.364 88 33 1 1 87 1 88 7.93e-34 121
Msa0336940 MtrunA17_Chr4g0030881 49.138 116 52 1 12 120 8 123 2.62e-33 125
Msa0336940 MtrunA17_Chr2g0294811 59.783 92 36 1 1 91 1 92 7.36e-33 120
Msa0336940 MtrunA17_Chr2g0293911 49.587 121 60 1 11 131 24 143 2.02e-32 125
Msa0336940 MtrunA17_Chr7g0247131 68.919 74 23 0 42 115 9 82 7.34e-32 122
Msa0336940 MtrunA17_Chr8g0342531 59.036 83 34 0 6 88 7 89 1.98e-31 117
Msa0336940 MtrunA17_Chr4g0068921 48.000 125 64 1 7 131 20 143 2.92e-31 118
Msa0336940 MtrunA17_Chr1g0192411 48.148 108 56 0 7 114 8 115 4.35e-31 123
Msa0336940 MtrunA17_Chr8g0342511 56.790 81 35 0 6 86 7 87 6.63e-31 114
Msa0336940 MtrunA17_Chr5g0395221 57.955 88 36 1 1 87 1 88 1.49e-30 112
Msa0336940 MtrunA17_Chr8g0334881 50.926 108 52 1 7 113 6 113 1.58e-30 119
Msa0336940 MtrunA17_Chr5g0440761 47.573 103 53 1 12 113 13 115 3.16e-30 117
Msa0336940 MtrunA17_Chr5g0441141 47.573 103 53 1 12 113 13 115 3.71e-30 117
Msa0336940 MtrunA17_Chr5g0440781 47.573 103 53 1 12 113 13 115 4.62e-30 114
Msa0336940 MtrunA17_Chr5g0429661 40.994 161 78 5 11 168 120 266 7.66e-30 118
Msa0336940 MtrunA17_Chr8g0342461 56.977 86 32 2 6 88 7 90 1.69e-29 111
Msa0336940 MtrunA17_Chr8g0342471 55.814 86 33 2 6 88 7 90 8.15e-29 110
Msa0336940 MtrunA17_Chr4g0008551 47.706 109 54 2 13 120 38 144 2.62e-28 114
Msa0336940 MtrunA17_Chr5g0441131 46.602 103 54 1 12 113 10 112 3.35e-28 109
Msa0336940 MtrunA17_Chr3g0133601 50.980 102 49 1 13 114 37 137 5.69e-28 110
Msa0336940 MtrunA17_Chr3g0099141 54.023 87 40 0 7 93 36 122 1.06e-27 107
Msa0336940 MtrunA17_Chr4g0053431 48.113 106 46 2 13 114 5 105 1.53e-27 110
Msa0336940 MtrunA17_Chr4g0013361 46.789 109 56 2 11 118 10 117 2.53e-27 110
Msa0336940 MtrunA17_Chr6g0454921 50.485 103 48 2 13 114 15 115 8.23e-27 106
Msa0336940 MtrunA17_Chr3g0117511 43.103 116 59 3 13 127 183 292 3.15e-26 109
Msa0336940 MtrunA17_Chr4g0042501 45.217 115 60 2 13 126 105 217 6.33e-26 108
Msa0336940 MtrunA17_Chr5g0417621 43.697 119 64 2 13 130 134 250 8.60e-26 108
Msa0336940 MtrunA17_Chr5g0401731 46.602 103 52 2 13 114 15 115 1.15e-25 106
Msa0336940 MtrunA17_Chr5g0434901 63.235 68 25 0 45 112 7 74 1.25e-25 100
Msa0336940 MtrunA17_Chr4g0058991 45.283 106 55 2 13 117 209 312 1.27e-25 108
Msa0336940 MtrunA17_Chr6g0480581 50.000 102 48 2 13 113 4 103 4.17e-25 102
Msa0336940 MtrunA17_Chr7g0228531 38.824 170 78 6 13 170 220 375 8.50e-25 105
Msa0336940 MtrunA17_Chr7g0229131 39.860 143 66 4 42 165 3 144 1.37e-24 99.4
Msa0336940 MtrunA17_Chr6g0453751 48.936 94 39 2 8 92 17 110 1.66e-24 97.8
Msa0336940 MtrunA17_Chr7g0229101 59.155 71 29 0 42 112 3 73 2.37e-24 99.8
Msa0336940 MtrunA17_Chr7g0238631 45.872 109 56 2 8 115 108 214 3.44e-24 104
Msa0336940 MtrunA17_Chr7g0238631 34.000 100 64 2 13 111 61 159 3.59e-13 71.2
Msa0336940 MtrunA17_Chr3g0139671 42.202 109 60 2 8 115 80 186 9.06e-23 100
Msa0336940 MtrunA17_Chr3g0139671 35.000 100 63 2 13 111 33 131 2.80e-13 72.0
Msa0336940 MtrunA17_Chr5g0437321 45.794 107 54 3 7 111 12 116 1.99e-22 96.7
Msa0336940 MtrunA17_Chr3g0125801 45.872 109 56 2 7 114 10 116 2.15e-22 96.7
Msa0336940 MtrunA17_Chr1g0157731 42.202 109 60 2 8 115 86 192 2.47e-22 99.8
Msa0336940 MtrunA17_Chr1g0157731 34.000 100 64 2 13 111 39 137 9.99e-14 73.2
Msa0336940 MtrunA17_Chr7g0254261 44.348 115 61 2 13 126 89 201 5.89e-22 96.3
Msa0336940 MtrunA17_Chr5g0425591 48.780 82 41 1 12 92 10 91 6.53e-22 89.7
Msa0336940 MtrunA17_Chr6g0460661 41.748 103 57 2 13 114 16 116 7.25e-22 91.7
Msa0336940 MtrunA17_Chr7g0228481 43.750 112 59 3 13 124 220 327 7.94e-22 97.1
Msa0336940 MtrunA17_Chr3g0093811 52.703 74 35 0 42 115 13 86 2.13e-21 93.2
Msa0336940 MtrunA17_Chr5g0397841 45.000 100 54 1 8 107 105 203 1.63e-20 93.2
Msa0336940 MtrunA17_Chr6g0460671 40.870 115 62 3 13 123 99 211 2.21e-20 91.7
Msa0336940 MtrunA17_Chr7g0233061 37.815 119 66 4 13 129 180 292 4.78e-20 90.9
Msa0336940 MtrunA17_Chr7g0228401 40.952 105 58 3 24 128 290 390 1.84e-19 90.5
Msa0336940 MtrunA17_Chr1g0177901 44.156 77 42 1 36 112 17 92 2.70e-17 80.1
Msa0336940 MtrunA17_Chr7g0238651 34.783 138 77 3 16 151 10 136 1.02e-16 81.3
Msa0336940 MtrunA17_Chr8g0362231 39.286 112 65 2 15 125 24 133 1.28e-15 78.2
Msa0336940 MtrunA17_Chr5g0416341 39.604 101 58 2 15 114 28 126 2.90e-15 77.4
Msa0336940 MtrunA17_Chr1g0193901 45.977 87 45 2 8 92 8 94 4.66e-14 68.2
Msa0336940 MtrunA17_Chr1g0193891 45.977 87 45 2 8 92 8 94 4.66e-14 68.2
Msa0336940 MtrunA17_Chr1g0193871 45.977 87 45 2 8 92 8 94 4.66e-14 68.2
Msa0336940 MtrunA17_Chr1g0193881 45.977 87 45 2 8 92 8 94 4.66e-14 68.2
Msa0336940 MtrunA17_Chr5g0434871 56.818 44 19 0 73 116 2 45 4.48e-13 64.3
Msa0336940 MtrunA17_Chr5g0421201 48.980 49 25 0 69 117 15 63 3.02e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336940 AT3G23250.1 42.601 223 106 5 1 202 1 222 4.69e-54 181
Msa0336940 AT4G28110.1 63.559 118 42 1 1 117 1 118 2.69e-52 176
Msa0336940 AT2G31180.1 46.667 210 95 5 1 209 1 194 2.78e-52 176
Msa0336940 AT5G16770.4 63.559 118 42 1 1 117 1 118 3.01e-51 175
Msa0336940 AT5G16770.3 63.559 118 42 1 1 117 1 118 3.01e-51 175
Msa0336940 AT5G16770.1 63.559 118 42 1 1 117 1 118 6.04e-51 175
Msa0336940 AT5G16770.2 63.559 118 42 1 1 117 1 118 6.04e-51 175
Msa0336940 AT5G15310.1 65.254 118 40 1 1 117 1 118 6.33e-51 174
Msa0336940 AT5G15310.2 65.254 118 40 1 1 117 1 118 8.05e-51 174
Msa0336940 AT4G21440.1 61.864 118 44 1 1 117 1 118 1.17e-50 174
Msa0336940 AT5G15310.4 65.254 118 40 1 1 117 1 118 1.43e-50 171
Msa0336940 AT3G01140.2 65.254 118 40 1 1 117 1 118 2.15e-50 173
Msa0336940 AT4G05100.1 63.025 119 42 1 1 117 1 119 6.33e-50 172
Msa0336940 AT5G07700.1 51.163 172 79 3 1 171 1 168 7.98e-50 172
Msa0336940 AT5G07700.2 51.163 172 79 3 1 171 1 168 7.98e-50 172
Msa0336940 AT1G06180.1 65.517 116 39 1 1 115 1 116 1.68e-49 168
Msa0336940 AT3G01140.1 64.407 118 41 1 1 117 44 161 2.40e-49 172
Msa0336940 AT1G16490.1 63.158 114 41 1 3 115 5 118 3.23e-49 168
Msa0336940 AT3G02940.2 61.864 118 44 1 1 117 1 118 3.86e-49 169
Msa0336940 AT1G74080.1 64.407 118 41 1 1 117 1 118 4.63e-49 169
Msa0336940 AT3G02940.1 61.864 118 44 1 1 117 1 118 8.35e-49 169
Msa0336940 AT3G02940.3 61.864 118 44 1 1 117 1 118 8.35e-49 169
Msa0336940 AT3G61250.1 63.248 117 42 1 1 116 1 117 9.73e-49 168
Msa0336940 AT5G10280.1 61.017 118 45 1 1 117 1 118 2.81e-48 167
Msa0336940 AT5G60890.1 62.931 116 42 1 1 115 1 116 2.88e-48 166
Msa0336940 AT1G34670.1 61.864 118 44 1 1 117 1 118 3.03e-48 168
Msa0336940 AT1G18570.1 63.025 119 42 1 1 117 1 119 3.41e-48 168
Msa0336940 AT1G79180.1 61.538 117 44 1 3 118 5 121 5.63e-48 166
Msa0336940 AT1G74430.1 63.393 112 41 0 7 118 8 119 1.06e-47 164
Msa0336940 AT5G07690.1 58.209 134 54 2 1 132 1 134 1.54e-47 166
Msa0336940 AT5G61420.2 61.017 118 45 1 1 117 1 118 1.64e-47 166
Msa0336940 AT5G65230.1 61.864 118 44 1 1 117 1 118 1.89e-47 165
Msa0336940 AT4G38620.1 58.974 117 47 1 1 116 1 117 8.53e-47 162
Msa0336940 AT1G22640.1 58.120 117 48 1 1 116 1 117 9.20e-47 161
Msa0336940 AT4G17785.2 57.983 119 48 1 1 117 1 119 9.48e-47 164
Msa0336940 AT4G17785.1 57.983 119 48 1 1 117 1 119 1.20e-46 164
Msa0336940 AT4G22680.1 61.017 118 45 1 1 117 1 118 1.69e-46 161
Msa0336940 AT5G16600.1 47.159 176 70 3 1 153 1 176 8.12e-46 161
Msa0336940 AT2G16720.1 57.265 117 49 1 1 116 1 117 1.33e-45 159
Msa0336940 AT5G54230.1 62.617 107 40 0 11 117 12 118 1.54e-45 160
Msa0336940 AT5G26660.1 57.600 125 44 1 6 130 7 122 1.58e-45 161
Msa0336940 AT1G56160.1 60.526 114 44 1 3 115 5 118 1.72e-45 159
Msa0336940 AT4G12350.1 43.721 215 111 6 1 209 1 211 2.10e-45 159
Msa0336940 AT4G34990.1 57.627 118 49 1 1 117 1 118 2.35e-45 158
Msa0336940 AT4G09460.1 58.120 117 48 1 1 116 1 117 2.49e-45 157
Msa0336940 AT1G35515.1 57.265 117 49 1 1 116 1 117 2.72e-45 156
Msa0336940 AT1G66230.1 60.169 118 46 1 1 117 1 118 3.20e-45 158
Msa0336940 AT4G01680.3 61.818 110 42 0 6 115 7 116 4.28e-45 156
Msa0336940 AT1G57560.1 58.036 112 47 0 6 117 7 118 4.40e-45 159
Msa0336940 AT1G57560.2 58.036 112 47 0 6 117 7 118 4.73e-45 157
Msa0336940 AT5G14750.1 45.503 189 98 4 8 193 13 199 5.77e-45 155
Msa0336940 AT3G12820.1 58.621 116 47 1 3 117 5 120 6.24e-45 156
Msa0336940 AT5G56110.1 58.621 116 47 1 1 115 1 116 7.46e-45 158
Msa0336940 AT1G18710.1 60.550 109 43 0 7 115 8 116 1.11e-44 156
Msa0336940 AT3G12720.1 55.856 111 49 0 6 116 17 127 1.23e-44 157
Msa0336940 AT4G01680.1 61.818 110 42 0 6 115 7 116 1.80e-44 157
Msa0336940 AT5G62320.1 46.429 168 73 4 3 162 4 162 2.76e-44 154
Msa0336940 AT3G13540.1 55.172 116 51 1 4 118 15 130 4.85e-44 154
Msa0336940 AT3G13890.2 57.658 111 47 0 6 116 7 117 1.16e-43 156
Msa0336940 AT3G62610.1 58.621 116 47 1 1 115 1 116 1.61e-43 155
Msa0336940 AT5G35550.1 55.385 130 58 0 11 140 14 143 1.80e-43 152
Msa0336940 AT1G09540.1 49.286 140 60 1 6 145 7 135 2.92e-43 155
Msa0336940 AT3G28470.1 60.000 110 43 1 1 109 1 110 6.63e-43 153
Msa0336940 AT3G47600.1 57.627 118 49 1 1 117 1 118 8.15e-43 153
Msa0336940 AT5G14340.1 57.759 116 48 1 1 115 13 128 1.02e-42 151
Msa0336940 AT3G28910.1 58.475 118 48 1 1 117 1 118 1.61e-42 152
Msa0336940 AT5G49330.1 58.621 116 47 1 1 115 1 116 1.86e-42 152
Msa0336940 AT5G62470.2 45.614 171 91 2 1 169 1 171 2.93e-42 152
Msa0336940 AT1G63910.1 56.250 112 49 0 6 117 7 118 6.93e-42 152
Msa0336940 AT2G47460.1 56.034 116 50 1 1 115 1 116 7.46e-42 152
Msa0336940 AT5G57620.1 54.098 122 54 2 1 120 1 122 9.72e-42 150
Msa0336940 AT5G40330.1 60.577 104 41 0 12 115 13 116 1.20e-41 147
Msa0336940 AT1G08810.1 55.556 126 55 1 1 125 1 126 2.15e-41 148
Msa0336940 AT1G79180.2 47.333 150 45 2 3 118 5 154 2.18e-41 149
Msa0336940 AT1G74650.1 57.265 117 49 1 1 116 1 117 2.22e-41 149
Msa0336940 AT3G27920.1 52.941 119 56 0 3 121 6 124 2.25e-41 146
Msa0336940 AT4G01680.2 55.738 122 42 1 6 115 7 128 4.20e-41 149
Msa0336940 AT3G49690.1 55.932 118 50 2 1 116 1 118 6.19e-41 147
Msa0336940 AT5G12870.1 58.879 107 44 0 11 117 18 124 1.25e-40 146
Msa0336940 AT5G62470.1 45.614 171 90 3 1 169 1 170 1.34e-40 147
Msa0336940 AT3G13890.1 53.333 120 47 1 6 116 7 126 1.36e-40 148
Msa0336940 AT5G23000.1 53.390 118 53 2 1 116 1 118 1.41e-40 147
Msa0336940 AT4G37780.1 51.181 127 56 3 1 125 1 123 3.65e-40 145
Msa0336940 AT3G08500.1 60.952 105 41 0 11 115 30 134 8.76e-40 145
Msa0336940 AT5G06100.1 53.982 113 52 0 2 114 23 135 1.18e-39 147
Msa0336940 AT5G65790.1 54.237 118 52 2 1 116 1 118 1.95e-39 145
Msa0336940 AT2G32460.2 60.000 105 42 0 10 114 5 109 2.88e-39 147
Msa0336940 AT2G32460.1 58.333 108 45 0 7 114 14 121 2.99e-39 147
Msa0336940 AT5G06100.5 53.982 113 52 0 2 114 23 135 4.38e-39 147
Msa0336940 AT5G06100.2 53.982 113 52 0 2 114 23 135 4.38e-39 147
Msa0336940 AT5G06100.3 53.982 113 52 0 2 114 23 135 4.38e-39 147
Msa0336940 AT5G06100.4 53.982 113 52 0 2 114 23 135 4.38e-39 147
Msa0336940 AT2G36890.1 54.237 118 52 2 1 116 1 118 8.25e-39 141
Msa0336940 AT2G36890.2 54.237 118 52 2 1 116 42 159 1.11e-38 142
Msa0336940 AT3G11440.2 53.097 113 49 1 6 114 32 144 2.03e-38 144
Msa0336940 AT3G30210.1 44.086 186 75 3 10 182 26 195 3.48e-38 139
Msa0336940 AT5G40350.1 57.009 107 46 0 11 117 17 123 5.38e-38 137
Msa0336940 AT3G27810.1 57.944 107 44 1 11 117 20 125 7.09e-38 137
Msa0336940 AT5G52260.1 57.944 107 45 0 12 118 13 119 7.73e-38 138
Msa0336940 AT3G11440.3 53.097 113 49 1 6 114 32 144 8.16e-38 144
Msa0336940 AT3G11440.4 53.097 113 49 1 6 114 32 144 8.16e-38 144
Msa0336940 AT3G11440.1 53.097 113 49 1 6 114 32 144 8.16e-38 144
Msa0336940 AT4G26930.1 57.282 103 44 0 11 113 19 121 1.00e-37 141
Msa0336940 AT3G24310.1 59.048 105 43 0 10 114 17 121 1.11e-37 137
Msa0336940 AT4G13480.1 60.194 103 41 0 12 114 7 109 2.56e-37 136
Msa0336940 AT3G48920.1 57.843 102 43 0 12 113 19 120 3.02e-37 136
Msa0336940 AT1G48000.1 56.311 103 45 0 11 113 32 134 6.43e-37 135
Msa0336940 AT5G52600.1 56.731 104 45 0 11 114 12 115 7.45e-37 133
Msa0336940 AT4G25560.1 55.140 107 48 0 12 118 11 117 9.78e-37 135
Msa0336940 AT5G55020.1 58.252 103 43 0 11 113 26 128 1.21e-36 140
Msa0336940 AT3G01530.1 55.340 103 46 0 11 113 25 127 2.10e-36 132
Msa0336940 AT1G68320.1 55.769 104 46 0 11 114 19 122 8.58e-36 133
Msa0336940 AT1G66370.1 55.238 105 47 0 10 114 7 111 1.85e-35 131
Msa0336940 AT2G47190.1 39.583 192 92 5 11 198 20 191 2.29e-35 132
Msa0336940 AT1G25340.1 48.507 134 58 2 12 145 19 141 4.82e-35 131
Msa0336940 AT2G26960.1 56.436 101 44 0 13 113 22 122 1.02e-34 133
Msa0336940 AT5G35550.2 56.863 102 44 0 39 140 45 146 3.88e-34 128
Msa0336940 AT3G46130.1 53.333 105 49 0 10 114 8 112 4.81e-34 127
Msa0336940 AT5G59780.3 53.398 103 48 0 12 114 9 111 9.87e-34 126
Msa0336940 AT1G66380.1 53.913 115 53 0 8 122 5 119 3.33e-33 122
Msa0336940 AT5G14750.3 43.678 174 84 6 23 193 3 165 5.13e-33 122
Msa0336940 AT3G53200.1 52.885 104 49 0 11 114 9 112 5.61e-33 124
Msa0336940 AT1G56650.1 52.991 117 55 0 10 126 7 123 1.18e-32 124
Msa0336940 AT1G66390.1 56.190 105 46 0 10 114 7 111 4.70e-32 122
Msa0336940 AT3G06490.1 49.587 121 60 1 11 131 19 138 5.58e-32 124
Msa0336940 AT5G26660.2 60.920 87 25 1 44 130 14 91 4.34e-31 121
Msa0336940 AT5G49620.1 48.760 121 61 1 11 131 26 145 6.54e-31 120
Msa0336940 AT3G12820.2 69.014 71 22 0 47 117 2 72 1.42e-30 116
Msa0336940 AT1G25340.2 46.269 134 56 3 12 145 19 136 2.21e-30 118
Msa0336940 AT1G25340.3 46.269 134 56 3 12 145 19 136 3.74e-30 118
Msa0336940 AT3G60460.1 50.000 104 51 1 11 113 11 114 1.06e-28 114
Msa0336940 AT3G27810.2 60.526 76 29 1 42 117 2 76 1.52e-28 110
Msa0336940 AT3G47600.2 55.789 95 38 1 23 117 22 112 2.30e-28 114
Msa0336940 AT5G40350.2 60.811 74 29 0 44 117 5 78 5.68e-28 108
Msa0336940 AT3G09230.1 49.123 114 49 2 13 122 55 163 6.78e-28 114
Msa0336940 AT3G27785.1 44.068 118 65 1 5 122 181 297 9.69e-28 114
Msa0336940 AT5G11050.1 33.740 246 124 8 13 249 105 320 1.64e-27 113
Msa0336940 AT5G49620.2 43.704 135 61 2 11 131 26 159 1.96e-27 111
Msa0336940 AT4G18770.1 43.966 116 63 2 11 125 215 329 2.34e-27 113
Msa0336940 AT5G40360.1 46.491 114 56 3 11 123 156 265 3.37e-27 111
Msa0336940 AT3G23250.2 37.349 166 83 4 57 202 1 165 3.74e-27 108
Msa0336940 AT2G26950.1 48.421 95 49 0 13 107 18 112 6.08e-27 111
Msa0336940 AT1G69560.1 46.087 115 59 2 13 126 107 219 1.51e-26 109
Msa0336940 AT1G69560.2 46.087 115 59 2 13 126 123 235 1.73e-26 109
Msa0336940 AT3G46130.3 59.722 72 29 0 43 114 9 80 2.02e-26 106
Msa0336940 AT5G58850.1 41.270 126 64 3 11 135 103 219 2.24e-26 110
Msa0336940 AT5G59780.2 60.563 71 28 0 44 114 20 90 3.82e-26 105
Msa0336940 AT3G46130.4 60.563 71 28 0 44 114 20 90 4.66e-26 105
Msa0336940 AT1G17950.1 46.610 118 51 3 13 129 5 111 1.32e-25 104
Msa0336940 AT3G53200.2 61.972 71 27 0 44 114 9 79 1.35e-25 103
Msa0336940 AT5G67300.1 48.544 103 50 2 13 114 6 106 1.80e-25 105
Msa0336940 AT1G26780.2 44.444 117 62 2 11 126 96 210 1.83e-25 106
Msa0336940 AT1G26780.1 44.444 117 62 2 11 126 96 210 2.89e-25 104
Msa0336940 AT5G11510.3 42.593 108 61 1 8 115 76 182 5.61e-25 108
Msa0336940 AT5G11510.3 34.000 100 64 2 13 111 29 127 1.95e-13 72.8
Msa0336940 AT5G11510.1 42.593 108 61 1 8 115 76 182 5.61e-25 108
Msa0336940 AT5G11510.1 34.000 100 64 2 13 111 29 127 1.95e-13 72.8
Msa0336940 AT5G11510.4 42.593 108 61 1 8 115 76 182 5.61e-25 108
Msa0336940 AT5G11510.4 34.000 100 64 2 13 111 29 127 1.95e-13 72.8
Msa0336940 AT3G50060.1 47.573 103 51 2 13 114 6 106 7.07e-25 103
Msa0336940 AT5G11510.2 42.593 108 61 1 8 115 76 182 7.88e-25 107
Msa0336940 AT5G11510.2 34.000 100 64 2 13 111 29 127 2.23e-13 72.4
Msa0336940 AT5G11510.5 42.593 108 61 1 8 115 76 182 9.89e-25 107
Msa0336940 AT5G11510.5 34.000 100 64 2 13 111 29 127 2.53e-13 72.4
Msa0336940 AT3G55730.1 47.115 104 52 2 13 115 56 157 2.56e-24 104
Msa0336940 AT3G09370.2 45.045 111 52 2 8 114 130 235 2.60e-24 105
Msa0336940 AT3G09370.2 35.000 100 63 2 13 111 83 181 1.06e-12 70.1
Msa0336940 AT3G09370.1 45.045 111 52 2 8 114 125 230 3.29e-24 105
Msa0336940 AT3G09370.1 35.000 100 63 2 13 111 78 176 1.31e-12 69.7
Msa0336940 AT3G09370.3 45.045 111 52 2 8 114 138 243 3.87e-24 104
Msa0336940 AT3G09370.3 35.000 100 63 2 13 111 91 189 1.09e-12 70.1
Msa0336940 AT1G66380.3 55.952 84 37 0 42 125 6 89 4.63e-24 96.3
Msa0336940 AT4G37260.1 47.059 102 53 1 13 114 13 113 4.77e-24 102
Msa0336940 AT5G02320.1 44.954 109 57 2 8 115 122 228 5.73e-24 104
Msa0336940 AT5G02320.1 37.000 100 61 2 13 111 75 173 1.38e-14 75.9
Msa0336940 AT5G02320.2 44.954 109 57 2 8 115 122 228 5.73e-24 104
Msa0336940 AT5G02320.2 37.000 100 61 2 13 111 75 173 1.38e-14 75.9
Msa0336940 AT5G02320.3 44.954 109 57 2 8 115 62 168 8.80e-24 103
Msa0336940 AT5G02320.3 37.000 100 61 2 13 111 15 113 1.93e-14 75.5
Msa0336940 AT5G14750.4 41.429 140 77 4 57 193 1 138 1.09e-23 96.3
Msa0336940 AT5G14750.2 41.429 140 77 4 57 193 1 138 1.09e-23 96.3
Msa0336940 AT1G73410.1 49.515 103 49 2 13 114 6 106 2.01e-23 98.6
Msa0336940 AT4G33450.1 45.455 110 59 1 12 121 18 126 3.60e-23 98.2
Msa0336940 AT2G23290.1 46.602 103 52 2 13 114 13 113 4.71e-23 99.0
Msa0336940 AT2G39880.1 46.226 106 48 2 13 114 50 150 5.24e-23 100
Msa0336940 AT1G71030.2 57.353 68 29 0 50 117 5 72 7.45e-23 95.5
Msa0336940 AT1G73410.2 49.515 103 49 2 13 114 6 106 7.57e-23 95.9
Msa0336940 AT1G71030.1 51.852 81 38 1 37 117 7 86 9.18e-23 95.5
Msa0336940 AT5G17800.1 44.118 102 56 1 13 114 93 193 3.39e-22 97.1
Msa0336940 AT1G66380.2 52.326 86 41 0 8 93 5 90 3.48e-22 91.3
Msa0336940 AT1G22640.3 61.667 60 23 0 57 116 1 60 3.57e-22 94.0
Msa0336940 AT3G29020.2 36.735 147 86 4 13 157 67 208 4.54e-22 96.3
Msa0336940 AT2G25230.1 45.133 113 54 4 13 124 26 131 8.13e-22 94.0
Msa0336940 AT4G32730.5 41.284 109 61 2 8 115 82 188 8.58e-22 98.6
Msa0336940 AT4G32730.5 34.579 107 68 2 13 118 35 140 1.21e-13 73.6
Msa0336940 AT4G32730.4 41.284 109 61 2 8 115 82 188 8.58e-22 98.6
Msa0336940 AT4G32730.4 34.579 107 68 2 13 118 35 140 1.21e-13 73.6
Msa0336940 AT4G32730.3 41.284 109 61 2 8 115 82 188 8.58e-22 98.6
Msa0336940 AT4G32730.3 34.579 107 68 2 13 118 35 140 1.21e-13 73.6
Msa0336940 AT4G32730.2 41.284 109 61 2 8 115 82 188 8.58e-22 98.6
Msa0336940 AT4G32730.2 34.579 107 68 2 13 118 35 140 1.21e-13 73.6
Msa0336940 AT3G29020.1 38.760 129 75 3 13 139 65 191 8.62e-22 94.0
Msa0336940 AT4G32730.1 41.284 109 61 2 8 115 82 188 1.16e-21 98.2
Msa0336940 AT4G32730.1 34.579 107 68 2 13 118 35 140 1.59e-13 73.2
Msa0336940 AT1G18960.1 42.373 118 56 5 1 115 1 109 2.55e-21 94.0
Msa0336940 AT5G40430.1 41.379 116 59 5 11 125 52 159 7.98e-19 85.9
Msa0336940 AT2G37630.1 36.232 138 74 3 16 151 7 132 8.43e-19 87.8
Msa0336940 AT5G39700.1 42.857 105 53 2 12 113 55 155 6.86e-18 81.6
Msa0336940 AT4G00540.2 41.284 109 58 3 11 115 101 207 3.00e-17 83.6
Msa0336940 AT4G00540.2 31.579 114 70 2 13 118 46 159 7.70e-11 63.9
Msa0336940 AT4G00540.1 41.284 109 58 3 11 115 99 205 5.54e-17 82.8
Msa0336940 AT1G14350.2 38.095 126 68 3 15 139 27 143 7.45e-17 82.4
Msa0336940 AT1G14350.1 38.095 126 68 3 15 139 27 143 7.45e-17 82.4
Msa0336940 AT3G18100.1 38.144 97 59 1 12 108 545 640 1.28e-15 79.7
Msa0336940 AT3G18100.3 38.144 97 59 1 12 108 497 592 2.14e-15 79.0
Msa0336940 AT3G18100.4 38.542 96 58 1 12 107 384 478 2.58e-15 78.6
Msa0336940 AT2G02820.1 37.500 112 67 2 15 125 32 141 3.76e-15 77.4
Msa0336940 AT3G18100.2 38.144 97 59 1 12 108 332 427 3.77e-15 77.8
Msa0336940 AT2G02820.2 37.500 112 67 2 15 125 32 141 3.92e-15 77.4
Msa0336940 AT2G02820.3 37.500 112 67 2 15 125 32 141 9.02e-15 75.5
Msa0336940 AT4G25560.2 58.696 46 19 0 72 117 5 50 6.00e-13 68.2
Msa0336940 AT5G59780.1 58.140 43 18 0 72 114 4 46 2.30e-12 65.5
Msa0336940 AT3G46130.2 58.140 43 18 0 72 114 4 46 3.83e-12 65.5

Find 84 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAAACTCCTTCAAATTTAT+TGG 0.117024 2_4:-56513677 None:intergenic
TAAAACTCCTTCAAGTTTAT+TGG 0.126920 2_4:-56514151 None:intergenic
AGGATTTGAGTGAGAATTTC+TGG 0.155231 2_4:+56514328 Msa0336940:CDS
GATATTTGATTTGCAATATT+AGG 0.201381 2_4:-56513715 None:intergenic
TTTCCATTGTAAGGTGATTA+TGG 0.216947 2_4:-56514386 None:intergenic
ATTATTTGAATTTGAATCTT+TGG 0.220751 2_4:-56513635 None:intergenic
TCCATTGTAGGGTGATTATA+GGG 0.235335 2_4:-56513886 None:intergenic
TTCCATTGTAGGGTGATTAT+AGG 0.248697 2_4:-56513887 None:intergenic
TATACTATACCTGCAAATTT+AGG 0.254465 2_4:-56509668 None:intergenic
TTATTGGCTTCTTCCAATAT+AGG 0.256671 2_4:-56513661 None:intergenic
ATGAATAATGCATCCATAAA+AGG 0.286876 2_4:-56514072 None:intergenic
TTCAAATAATCACCCTATAT+TGG 0.288064 2_4:+56513648 Msa0336940:CDS
GACAATCGACTTGCAATATT+AGG 0.293210 2_4:-56514186 None:intergenic
CGTGATTGCTTCAAATTTAC+CGG 0.299900 2_4:+56513519 Msa0336940:CDS
TACTACTACCACCAAATTCT+TGG 0.300654 2_4:-56509493 None:intergenic
TATTGGCTTCTTCCAATATA+GGG 0.314144 2_4:-56513660 None:intergenic
ACAGGCACACACCAAGAATT+TGG 0.315908 2_4:+56509482 Msa0336940:five_prime_UTR
GTGATTCTTTACCTCATTAT+CGG 0.317179 2_4:-56513548 None:intergenic
TTCTTGGTTTCTTCCATTGT+AGG 0.324003 2_4:-56513898 None:intergenic
TATGAATTGTCTATCATATA+TGG 0.327989 2_4:-56513859 None:intergenic
TTTAATGGATGCATTATTCA+TGG 0.332906 2_4:+56514464 Msa0336940:CDS
TGTGAACTGTCTATCATATA+AGG 0.339402 2_4:-56514357 None:intergenic
TAGAAAGTGTCTATCATATA+TGG 0.352614 2_4:-56514126 None:intergenic
GTGTGTGCTGTTCTATATAT+AGG 0.363803 2_4:-56509448 None:intergenic
CTATATATAGGGAGAATAAT+TGG 0.366642 2_4:-56509436 None:intergenic
CGACAACTACCTAAATTTGC+AGG 0.368724 2_4:+56509659 Msa0336940:CDS
AGATAGTGAACTCGTAATAT+TGG 0.395570 2_4:-56513953 None:intergenic
CTAGGTATGGCTGTTGGAAT+TGG 0.399200 2_4:+56509636 Msa0336940:CDS
TTCTATGCCAATAAACTTGA+AGG 0.399423 2_4:+56514144 Msa0336940:CDS
AGAACCCCTTGTGACAATAA+TGG 0.416910 2_4:+56509557 Msa0336940:CDS
AGGTCATTGTCATCAAGAAT+TGG 0.433113 2_4:-56514282 None:intergenic
GAAGAAGCCAATAAATTTGA+AGG 0.437102 2_4:+56513670 Msa0336940:CDS
CTTTATAAAACGCTTCTTCA+AGG 0.438316 2_4:-56513581 None:intergenic
TCTTGGTTTCTTCCATTGTA+GGG 0.439231 2_4:-56513897 None:intergenic
GACAATAATGGATTGAGAAA+AGG 0.457500 2_4:+56509569 Msa0336940:CDS
ATTGCTTATGTAACTAGGTA+TGG 0.467457 2_4:+56509623 Msa0336940:CDS
AGTTGATTGCTTATGTAACT+AGG 0.476172 2_4:+56509618 Msa0336940:CDS
CTCAATCCATTATTGTCACA+AGG 0.493237 2_4:-56509563 None:intergenic
CTGAGGCCAAATATCAAAAG+AGG 0.509978 2_4:+56510259 Msa0336940:CDS
CAAGAGAATCCGCTTGAAGA+TGG 0.512963 2_4:-56513982 None:intergenic
GAAGAAACCAAGAAACTTGA+CGG 0.523731 2_4:+56513907 Msa0336940:CDS
TGTGTGCTGTTCTATATATA+GGG 0.528068 2_4:-56509447 None:intergenic
CAAGACAAATCGCTTGAAGC+TGG 0.530400 2_4:-56513745 None:intergenic
GTTCTCACCATGGTCTCTAA+AGG 0.539675 2_4:-56509539 None:intergenic
TGTATGTTTCCATAAAAGAA+AGG 0.541995 2_4:-56513804 None:intergenic
TGAATGCATCCATAAAATGA+AGG 0.545826 2_4:-56514302 None:intergenic
ACCTCATTATCGGTTCTCCC+CGG 0.550386 2_4:-56513538 None:intergenic
TGGATTCTCATATGATATTG+TGG 0.550630 2_4:-56514262 None:intergenic
GTGGGAAGAGCTGTAGACTA+AGG 0.551758 2_4:+56510224 Msa0336940:CDS
CACACACACCCACACTACAC+AGG 0.552185 2_4:+56509464 Msa0336940:five_prime_UTR
TCACCATGGTCTCTAAAGGC+TGG 0.553133 2_4:-56509535 None:intergenic
TGGTGTGTGCCTGTGTAGTG+TGG 0.555409 2_4:-56509473 None:intergenic
TTTCAGGGCTTGAAAGGTGT+GGG 0.557460 2_4:+56510206 Msa0336940:intron
CAATCCATTATTGTCACAAG+GGG 0.566200 2_4:-56509561 None:intergenic
TGCATTCTCTTGCATAACAA+TGG 0.567171 2_4:+56514227 Msa0336940:CDS
GGTGTGTGCCTGTGTAGTGT+GGG 0.570806 2_4:-56509472 None:intergenic
GTGATTGCTTCAAATTTACC+GGG 0.570836 2_4:+56513520 Msa0336940:CDS
CAAGAGAATGCACTTGAAGA+TGG 0.571011 2_4:-56514216 None:intergenic
AAGAATATTAAGTCTAAGCG+TGG 0.575339 2_4:+56513601 Msa0336940:CDS
ATGGATTGAGAAAAGGCACT+TGG 0.575990 2_4:+56509576 Msa0336940:CDS
ATAATGAGGTAAAGAATCAC+TGG 0.577807 2_4:+56513551 Msa0336940:CDS
ATAATGCATCCATTAAAAGA+AGG 0.578712 2_4:-56514458 None:intergenic
ACCGGGGAGAACCGATAATG+AGG 0.590459 2_4:+56513537 Msa0336940:CDS
AGGGAGAATAATTGGAGGAG+TGG 0.591305 2_4:-56509428 None:intergenic
CGGTAAATTTGAAGCAATCA+CGG 0.592595 2_4:-56513518 None:intergenic
TCAATCCATTATTGTCACAA+GGG 0.597815 2_4:-56509562 None:intergenic
GGCACACACCAAGAATTTGG+TGG 0.600882 2_4:+56509485 Msa0336940:five_prime_UTR
GTCACAAGGGGTTCTCACCA+TGG 0.605010 2_4:-56509549 None:intergenic
TCTTCGCAACCATCTTCAAG+CGG 0.608733 2_4:+56513973 Msa0336940:CDS
ATGTAACTAGGTATGGCTGT+TGG 0.609352 2_4:+56509630 Msa0336940:CDS
CCATTGTAGGGTGATTATAG+GGG 0.613750 2_4:-56513885 None:intergenic
CCCCTATAATCACCCTACAA+TGG 0.613964 2_4:+56513885 Msa0336940:CDS
CTACCAGCCTTTAGAGACCA+TGG 0.614533 2_4:+56509532 Msa0336940:exon
TATATAGGGAGAATAATTGG+AGG 0.617865 2_4:-56509433 None:intergenic
TGAGGCCAAATATCAAAAGA+GGG 0.619320 2_4:+56510260 Msa0336940:CDS
CGATTTGTCTTGCATAACAA+CGG 0.619640 2_4:+56513756 Msa0336940:CDS
TAAGGTGGATGAACTATCTG+AGG 0.621739 2_4:+56510242 Msa0336940:CDS
CCATTGTAAGGTGATTATGG+AGG 0.622467 2_4:-56514383 None:intergenic
CCTCCATAATCACCTTACAA+TGG 0.623207 2_4:+56514383 Msa0336940:CDS
AAAAGGCACTTGGACTCATG+AGG 0.629560 2_4:+56509586 Msa0336940:CDS
ATAATGCATCCATAAAAGGA+AGG 0.636763 2_4:-56514068 None:intergenic
ATATTAAGTCTAAGCGTGGA+AGG 0.639098 2_4:+56513605 Msa0336940:CDS
GGAAGAGCTGTAGACTAAGG+TGG 0.649277 2_4:+56510227 Msa0336940:CDS
TGATTGCTTCAAATTTACCG+GGG 0.729789 2_4:+56513521 Msa0336940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAATATTTTAAATTATT+AGG + chr2_4:56513439-56513458 Msa0336940:intron 0.0%
!! ATTAAGAATAATTATCTTTA+TGG - chr2_4:56510102-56510121 None:intergenic 10.0%
!! TTAATAATTAATGTGTAAAT+TGG + chr2_4:56510117-56510136 Msa0336940:intron 10.0%
!! AAAAAAAAAAAATTCATTGT+TGG - chr2_4:56510548-56510567 None:intergenic 10.0%
!! ACTAATATAATATTGTAAAT+AGG - chr2_4:56511310-56511329 None:intergenic 10.0%
!!! TTTAATATAACTTTACTTTT+AGG + chr2_4:56511355-56511374 Msa0336940:intron 10.0%
!! CAAAAATCTAAATTAATTTA+AGG - chr2_4:56512759-56512778 None:intergenic 10.0%
!! AAATTTGAAAAAAAAAACAT+AGG + chr2_4:56513181-56513200 Msa0336940:intron 10.0%
!! AATTTGAAAAAAAAAACATA+GGG + chr2_4:56513182-56513201 Msa0336940:intron 10.0%
!!! TTTTAAATTAATTTTCTCAC+AGG + chr2_4:56510034-56510053 Msa0336940:intron 15.0%
!!! AATAAATTAACATACTTTTG+TGG + chr2_4:56510417-56510436 Msa0336940:intron 15.0%
!!! ATTTTGTGTATTTTTATACA+AGG + chr2_4:56511197-56511216 Msa0336940:intron 15.0%
!! TTGCATATATTTAATTAGTT+TGG + chr2_4:56512043-56512062 Msa0336940:intron 15.0%
!!! AGTTTGTTTAGTTAATTTTT+AGG + chr2_4:56512194-56512213 Msa0336940:intron 15.0%
!!! GTTTGTTTAGTTAATTTTTA+GGG + chr2_4:56512195-56512214 Msa0336940:intron 15.0%
!! AGAATATATATAAAAGTGAA+TGG - chr2_4:56512415-56512434 None:intergenic 15.0%
!!! CAAATTTGAAATTGTTTATT+TGG - chr2_4:56513168-56513187 None:intergenic 15.0%
!! ATTTGAAAAAAAAAACATAG+GGG + chr2_4:56513183-56513202 Msa0336940:intron 15.0%
!! TGGATAAAGTTAAAATTATA+AGG + chr2_4:56513378-56513397 Msa0336940:intron 15.0%
!! ATTATTTGAATTTGAATCTT+TGG - chr2_4:56513638-56513657 None:intergenic 15.0%
!! ATGTTAATTTATTCTCTTTG+AGG - chr2_4:56510410-56510429 None:intergenic 20.0%
!!! TGAAATGTTTCTATATATGA+AGG - chr2_4:56510457-56510476 None:intergenic 20.0%
!!! ACTCATGAAACTTATATTTT+AGG + chr2_4:56511138-56511157 Msa0336940:intron 20.0%
!!! TATATTTTAGGATTGTTTGT+TGG + chr2_4:56511150-56511169 Msa0336940:intron 20.0%
!! TTATTATCAAACAATTGGTT+TGG - chr2_4:56511606-56511625 None:intergenic 20.0%
!! CAATCTTATTATCAAACAAT+TGG - chr2_4:56511611-56511630 None:intergenic 20.0%
!! ACTAACTTACAAACATAAAA+GGG - chr2_4:56511649-56511668 None:intergenic 20.0%
!! TACTAACTTACAAACATAAA+AGG - chr2_4:56511650-56511669 None:intergenic 20.0%
!!! TTTGATTCTTTTGGATAATT+TGG + chr2_4:56511687-56511706 Msa0336940:intron 20.0%
!!! ATTTTTCACAAACACATTAT+GGG - chr2_4:56511728-56511747 None:intergenic 20.0%
!! AAATGGCATAATATATCAAA+AGG - chr2_4:56512445-56512464 None:intergenic 20.0%
!!! ATTATGCCATTTGATATTAT+TGG + chr2_4:56512453-56512472 Msa0336940:intron 20.0%
!!! AAATAGAGAAATTTTGTAAG+AGG - chr2_4:56512528-56512547 None:intergenic 20.0%
!! GTTAGATAACAAATAAATCT+TGG - chr2_4:56512617-56512636 None:intergenic 20.0%
!!! TTGTTTGTTATATTCAACAT+CGG - chr2_4:56512651-56512670 None:intergenic 20.0%
!! AGATAAGCAAAATAAAGTTA+TGG + chr2_4:56513232-56513251 Msa0336940:intron 20.0%
!! TAAATAGAATTCTCTTACAA+AGG - chr2_4:56513288-56513307 None:intergenic 20.0%
!!! TTTGAAAGTTCTAATACATA+TGG + chr2_4:56513358-56513377 Msa0336940:intron 20.0%
!!! GAAAACACTTTTTTTTTTGA+AGG - chr2_4:56513416-56513435 None:intergenic 20.0%
!! TAAAACTCCTTCAAATTTAT+TGG - chr2_4:56513680-56513699 None:intergenic 20.0%
!!! GATATTTGATTTGCAATATT+AGG - chr2_4:56513718-56513737 None:intergenic 20.0%
!!! ACAATTTTAGTGAGAATTTT+TGG + chr2_4:56513830-56513849 Msa0336940:CDS 20.0%
!! TATGAATTGTCTATCATATA+TGG - chr2_4:56513862-56513881 None:intergenic 20.0%
! CTATATATAGGGAGAATAAT+TGG - chr2_4:56509439-56509458 None:intergenic 25.0%
! TATACTATACCTGCAAATTT+AGG - chr2_4:56509671-56509690 None:intergenic 25.0%
!! ATCATAAATTTTCGTTGAAG+AGG + chr2_4:56509712-56509731 Msa0336940:intron 25.0%
! ATCAAACTTCATGAAAAACT+GGG + chr2_4:56510313-56510332 Msa0336940:CDS 25.0%
! AAAAAAAATTCATTGTTGGC+TGG - chr2_4:56510544-56510563 None:intergenic 25.0%
!!! AAACATTTGCTATTTAAGAG+AGG - chr2_4:56510616-56510635 None:intergenic 25.0%
! AGACATACACTATACATATT+TGG - chr2_4:56510647-56510666 None:intergenic 25.0%
!! TAAGTTTGTTTGTTCAAAGT+GGG - chr2_4:56510690-56510709 None:intergenic 25.0%
!!! TTATAAAAGAGCCTTTTTTC+TGG + chr2_4:56510939-56510958 Msa0336940:intron 25.0%
! TTTCAATAATGTGTTTGGTT+CGG - chr2_4:56511070-56511089 None:intergenic 25.0%
!! CCAATTTTCAATAATGTGTT+TGG - chr2_4:56511075-56511094 None:intergenic 25.0%
! CCAAACACATTATTGAAAAT+TGG + chr2_4:56511072-56511091 Msa0336940:intron 25.0%
!! TGGATGATTTTATGATTATG+TGG + chr2_4:56511170-56511189 Msa0336940:intron 25.0%
!! GGATGATTTTATGATTATGT+GGG + chr2_4:56511171-56511190 Msa0336940:intron 25.0%
!!! TTGAACATTACGCTTTATTT+TGG + chr2_4:56511220-56511239 Msa0336940:intron 25.0%
! TTTATGAGTAGATTTCTTCT+AGG + chr2_4:56511406-56511425 Msa0336940:intron 25.0%
!!! AAGAACTCTTTTGATTCTTT+TGG + chr2_4:56511678-56511697 Msa0336940:intron 25.0%
!! GATTTTTCACAAACACATTA+TGG - chr2_4:56511729-56511748 None:intergenic 25.0%
! ATTCAAATATGTCTTCAACA+AGG - chr2_4:56511751-56511770 None:intergenic 25.0%
!! AATCAATTGATTCTTCTCTT+TGG + chr2_4:56511821-56511840 Msa0336940:intron 25.0%
!! CTCTATTTGTTCTTCTATTT+TGG + chr2_4:56512020-56512039 Msa0336940:intron 25.0%
! AGAGTTCCAATAATATCAAA+TGG - chr2_4:56512462-56512481 None:intergenic 25.0%
!! AATTTCTCTATTTGTTAGAG+AGG + chr2_4:56512535-56512554 Msa0336940:intron 25.0%
! ACAAACAAAACATTCACATT+TGG + chr2_4:56512663-56512682 Msa0336940:intron 25.0%
! AATGATTTATAAAGTGCAGA+TGG + chr2_4:56513494-56513513 Msa0336940:intron 25.0%
! TTCAAATAATCACCCTATAT+TGG + chr2_4:56513648-56513667 Msa0336940:CDS 25.0%
! TGTATGTTTCCATAAAAGAA+AGG - chr2_4:56513807-56513826 None:intergenic 25.0%
!! TTCTTTTATGGAAACATACA+TGG + chr2_4:56513807-56513826 Msa0336940:CDS 25.0%
!! TGAATTTTCATGTGATATAG+TGG - chr2_4:56514031-56514050 None:intergenic 25.0%
!! CATGAAAATTCAGTTTTTGA+TGG + chr2_4:56514039-56514058 Msa0336940:CDS 25.0%
! ATGAATAATGCATCCATAAA+AGG - chr2_4:56514075-56514094 None:intergenic 25.0%
!! TTTTATGGATGCATTATTCA+TGG + chr2_4:56514074-56514093 Msa0336940:CDS 25.0%
!!! TAGAAAGTGTCTATCATATA+TGG - chr2_4:56514129-56514148 None:intergenic 25.0%
!! TAAAACTCCTTCAAGTTTAT+TGG - chr2_4:56514154-56514173 None:intergenic 25.0%
!! AAGTAACATTTTCCATTGTA+AGG - chr2_4:56514398-56514417 None:intergenic 25.0%
!! AAAATTTTCATGTGATGTTG+TGG - chr2_4:56514421-56514440 None:intergenic 25.0%
!! TGAAAATGACCTTCTTTTAA+TGG + chr2_4:56514449-56514468 Msa0336940:CDS 25.0%
! ATAATGCATCCATTAAAAGA+AGG - chr2_4:56514461-56514480 None:intergenic 25.0%
!! TTTAATGGATGCATTATTCA+TGG + chr2_4:56514464-56514483 Msa0336940:CDS 25.0%
TATATAGGGAGAATAATTGG+AGG - chr2_4:56509436-56509455 None:intergenic 30.0%
! TGTGTGCTGTTCTATATATA+GGG - chr2_4:56509450-56509469 None:intergenic 30.0%
TCAATCCATTATTGTCACAA+GGG - chr2_4:56509565-56509584 None:intergenic 30.0%
!! GACAATAATGGATTGAGAAA+AGG + chr2_4:56509569-56509588 Msa0336940:CDS 30.0%
AGTTGATTGCTTATGTAACT+AGG + chr2_4:56509618-56509637 Msa0336940:CDS 30.0%
ATTGCTTATGTAACTAGGTA+TGG + chr2_4:56509623-56509642 Msa0336940:CDS 30.0%
TGCAGGTATAGTATAAGAAA+AGG + chr2_4:56509676-56509695 Msa0336940:intron 30.0%
TTTGGTTGTGACCAAAAAAT+AGG + chr2_4:56509874-56509893 Msa0336940:intron 30.0%
TTGGTTGTGACCAAAAAATA+GGG + chr2_4:56509875-56509894 Msa0336940:intron 30.0%
AACATACGACATTGAATGAT+TGG - chr2_4:56509955-56509974 None:intergenic 30.0%
AACAATTCTCTCGAGTTTAA+AGG - chr2_4:56510187-56510206 None:intergenic 30.0%
! AAGTTCCCTCTTTTGATATT+TGG - chr2_4:56510268-56510287 None:intergenic 30.0%
CATCAAACTTCATGAAAAAC+TGG + chr2_4:56510312-56510331 Msa0336940:CDS 30.0%
TTCATGAAAAACTGGGTAAT+AGG + chr2_4:56510320-56510339 Msa0336940:CDS 30.0%
AACATATCAACACTCTATCA+TGG + chr2_4:56510347-56510366 Msa0336940:intron 30.0%
TCATAAAAAATCCATGGGTT+AGG - chr2_4:56510373-56510392 None:intergenic 30.0%
CGTGTTCATAAAAAATCCAT+GGG - chr2_4:56510378-56510397 None:intergenic 30.0%
TCGTGTTCATAAAAAATCCA+TGG - chr2_4:56510379-56510398 None:intergenic 30.0%
TTTCTATATATGAAGGCAAG+AGG - chr2_4:56510450-56510469 None:intergenic 30.0%
! AAGTTTGTTTGTTCAAAGTG+GGG - chr2_4:56510689-56510708 None:intergenic 30.0%
! CTAAGTTTGTTTGTTCAAAG+TGG - chr2_4:56510691-56510710 None:intergenic 30.0%
!!! TTGCGTTTTTAAGTGTGAAT+CGG + chr2_4:56510803-56510822 Msa0336940:intron 30.0%
GAAAAATTGGACCAGAAAAA+AGG - chr2_4:56510953-56510972 None:intergenic 30.0%
TCGGAAAGAAGAAGAAAAAT+TGG - chr2_4:56510966-56510985 None:intergenic 30.0%
GCTAACAATGATACAAATCA+AGG - chr2_4:56511467-56511486 None:intergenic 30.0%
TAAGATTGAGCTTATGCTAT+TGG + chr2_4:56511623-56511642 Msa0336940:intron 30.0%
ATTAACAAAGAGAGAAACCA+AGG - chr2_4:56511804-56511823 None:intergenic 30.0%
CTAATCTTTCTTCTCAATGT+TGG + chr2_4:56511858-56511877 Msa0336940:intron 30.0%
GATTAGATTTCTCACTTTAG+TGG + chr2_4:56511913-56511932 Msa0336940:intron 30.0%
!!! TCACTTTAGTGGCTTTTTTT+TGG + chr2_4:56511924-56511943 Msa0336940:intron 30.0%
TTGTAATAAGCTCAAAGCTT+TGG + chr2_4:56512224-56512243 Msa0336940:intron 30.0%
GAAAGTTTCACATATTAGAG+TGG - chr2_4:56512587-56512606 None:intergenic 30.0%
ACAAATAAATCTTGGCACTT+AGG - chr2_4:56512609-56512628 None:intergenic 30.0%
AACAAAACATTCACATTTGG+TGG + chr2_4:56512666-56512685 Msa0336940:intron 30.0%
AATTACTGTAAACCAGTTGA+TGG - chr2_4:56512723-56512742 None:intergenic 30.0%
CTTATATTCAAGACCAAAGA+AGG + chr2_4:56512920-56512939 Msa0336940:intron 30.0%
GAATAAGACAAGAAACTCAA+TGG + chr2_4:56512985-56513004 Msa0336940:intron 30.0%
GTGATTCTTTACCTCATTAT+CGG - chr2_4:56513551-56513570 None:intergenic 30.0%
ATAATGAGGTAAAGAATCAC+TGG + chr2_4:56513551-56513570 Msa0336940:CDS 30.0%
CTTTATAAAACGCTTCTTCA+AGG - chr2_4:56513584-56513603 None:intergenic 30.0%
AAGAATATTAAGTCTAAGCG+TGG + chr2_4:56513601-56513620 Msa0336940:CDS 30.0%
!! TATTGGCTTCTTCCAATATA+GGG - chr2_4:56513663-56513682 None:intergenic 30.0%
!! TTATTGGCTTCTTCCAATAT+AGG - chr2_4:56513664-56513683 None:intergenic 30.0%
GAAGAAGCCAATAAATTTGA+AGG + chr2_4:56513670-56513689 Msa0336940:CDS 30.0%
!! TGATAGTGACCTTTCTTTTA+TGG + chr2_4:56513795-56513814 Msa0336940:CDS 30.0%
AGATAGTGAACTCGTAATAT+TGG - chr2_4:56513956-56513975 None:intergenic 30.0%
ATAATGCATCCATAAAAGGA+AGG - chr2_4:56514071-56514090 None:intergenic 30.0%
TTCTATGCCAATAAACTTGA+AGG + chr2_4:56514144-56514163 Msa0336940:CDS 30.0%
TGGATTCTCATATGATATTG+TGG - chr2_4:56514265-56514284 None:intergenic 30.0%
! TGACAATGACCTTCATTTTA+TGG + chr2_4:56514293-56514312 Msa0336940:CDS 30.0%
TGAATGCATCCATAAAATGA+AGG - chr2_4:56514305-56514324 None:intergenic 30.0%
! TTTTATGGATGCATTCATAG+AGG + chr2_4:56514308-56514327 Msa0336940:CDS 30.0%
TGTGAACTGTCTATCATATA+AGG - chr2_4:56514360-56514379 None:intergenic 30.0%
TTTCCATTGTAAGGTGATTA+TGG - chr2_4:56514389-56514408 None:intergenic 30.0%
! GTGTGTGCTGTTCTATATAT+AGG - chr2_4:56509451-56509470 None:intergenic 35.0%
TACTACTACCACCAAATTCT+TGG - chr2_4:56509496-56509515 None:intergenic 35.0%
CAATCCATTATTGTCACAAG+GGG - chr2_4:56509564-56509583 None:intergenic 35.0%
CTCAATCCATTATTGTCACA+AGG - chr2_4:56509566-56509585 None:intergenic 35.0%
TTGGTCACAACCAAAGAAAT+GGG - chr2_4:56509869-56509888 None:intergenic 35.0%
TTTGGTCACAACCAAAGAAA+TGG - chr2_4:56509870-56509889 None:intergenic 35.0%
TGTGACCAAAAAATAGGGTT+TGG + chr2_4:56509880-56509899 Msa0336940:intron 35.0%
AGAGATGGAAAATACTTGTG+TGG - chr2_4:56509914-56509933 None:intergenic 35.0%
TTGGAGTAACATGTAAGAGA+TGG - chr2_4:56509929-56509948 None:intergenic 35.0%
! GACATTGAATGATTGGTCAT+TGG - chr2_4:56509948-56509967 None:intergenic 35.0%
TATGTGCTATCTCAGTATCT+TGG + chr2_4:56510153-56510172 Msa0336940:intron 35.0%
! AACTCGAGAGAATTGTTTTC+AGG + chr2_4:56510190-56510209 Msa0336940:intron 35.0%
! ACTCGAGAGAATTGTTTTCA+GGG + chr2_4:56510191-56510210 Msa0336940:intron 35.0%
!! AATTGTTTTCAGGGCTTGAA+AGG + chr2_4:56510200-56510219 Msa0336940:intron 35.0%
TGAGGCCAAATATCAAAAGA+GGG + chr2_4:56510260-56510279 Msa0336940:CDS 35.0%
! TTGTTGGCTGGTAACAATTT+CGG - chr2_4:56510532-56510551 None:intergenic 35.0%
TTTCCCTCATAGCTATTGAA+TGG + chr2_4:56510716-56510735 Msa0336940:intron 35.0%
TCACCATTCAATAGCTATGA+GGG - chr2_4:56510722-56510741 None:intergenic 35.0%
!!! CCGATTTCACTGATTTTGTT+GGG - chr2_4:56510881-56510900 None:intergenic 35.0%
CCCAACAAAATCAGTGAAAT+CGG + chr2_4:56510878-56510897 Msa0336940:intron 35.0%
!!! TCCGATTTCACTGATTTTGT+TGG - chr2_4:56510882-56510901 None:intergenic 35.0%
CACACGTTTAATGAGCTTAT+GGG - chr2_4:56510989-56511008 None:intergenic 35.0%
TCTATGGAAGATGAGTTGTT+TGG - chr2_4:56511033-56511052 None:intergenic 35.0%
GGTCGTTTAAGTGTAATCTA+TGG - chr2_4:56511049-56511068 None:intergenic 35.0%
!! AGAAAGCATTCCTAACGATA+TGG - chr2_4:56511519-56511538 None:intergenic 35.0%
TTGATGTTGGATCTATGTAG+CGG - chr2_4:56511551-56511570 None:intergenic 35.0%
!! TATATCAATGGGGTTGATGT+TGG - chr2_4:56511564-56511583 None:intergenic 35.0%
AACATCAACCCCATTGATAT+AGG + chr2_4:56511563-56511582 Msa0336940:intron 35.0%
TCGACTCAACCTATATCAAT+GGG - chr2_4:56511575-56511594 None:intergenic 35.0%
!! CTTTGTTGATTCTTCCCATT+TGG + chr2_4:56512114-56512133 Msa0336940:intron 35.0%
CTTAGGTGATCACATAAAGA+AGG - chr2_4:56512490-56512509 None:intergenic 35.0%
CTTCTTTATGTGATCACCTA+AGG + chr2_4:56512488-56512507 Msa0336940:intron 35.0%
GGTGAAATATGTCTAACCTT+AGG - chr2_4:56512507-56512526 None:intergenic 35.0%
AGTTTCACATATTAGAGTGG+TGG - chr2_4:56512584-56512603 None:intergenic 35.0%
!! ACCAAAGAAGGTATCTCTTT+AGG + chr2_4:56512932-56512951 Msa0336940:intron 35.0%
!! CCAAAGAAGGTATCTCTTTA+GGG + chr2_4:56512933-56512952 Msa0336940:intron 35.0%
AAGAAACTCAATGGATGAGA+TGG + chr2_4:56512994-56513013 Msa0336940:intron 35.0%
AGAAACTCAATGGATGAGAT+GGG + chr2_4:56512995-56513014 Msa0336940:intron 35.0%
! CGGTAAATTTGAAGCAATCA+CGG - chr2_4:56513521-56513540 None:intergenic 35.0%
CGTGATTGCTTCAAATTTAC+CGG + chr2_4:56513519-56513538 Msa0336940:CDS 35.0%
GTGATTGCTTCAAATTTACC+GGG + chr2_4:56513520-56513539 Msa0336940:CDS 35.0%
TGATTGCTTCAAATTTACCG+GGG + chr2_4:56513521-56513540 Msa0336940:CDS 35.0%
ATATTAAGTCTAAGCGTGGA+AGG + chr2_4:56513605-56513624 Msa0336940:CDS 35.0%
CGATTTGTCTTGCATAACAA+CGG + chr2_4:56513756-56513775 Msa0336940:CDS 35.0%
TCCATTGTAGGGTGATTATA+GGG - chr2_4:56513889-56513908 None:intergenic 35.0%
TTCCATTGTAGGGTGATTAT+AGG - chr2_4:56513890-56513909 None:intergenic 35.0%
!! GACAATCGACTTGCAATATT+AGG - chr2_4:56514189-56514208 None:intergenic 35.0%
TGCATTCTCTTGCATAACAA+TGG + chr2_4:56514227-56514246 Msa0336940:CDS 35.0%
AGGTCATTGTCATCAAGAAT+TGG - chr2_4:56514285-56514304 None:intergenic 35.0%
AGGATTTGAGTGAGAATTTC+TGG + chr2_4:56514328-56514347 Msa0336940:CDS 35.0%
AGAACCCCTTGTGACAATAA+TGG + chr2_4:56509557-56509576 Msa0336940:CDS 40.0%
!! ATGGATTGAGAAAAGGCACT+TGG + chr2_4:56509576-56509595 Msa0336940:CDS 40.0%
ATGTAACTAGGTATGGCTGT+TGG + chr2_4:56509630-56509649 Msa0336940:CDS 40.0%
CGACAACTACCTAAATTTGC+AGG + chr2_4:56509659-56509678 Msa0336940:CDS 40.0%
!! TCGTTGAAGAGGTATCTCTT+AGG + chr2_4:56509723-56509742 Msa0336940:intron 40.0%
TCTTAGGAGAAAGACTTGTG+TGG + chr2_4:56509739-56509758 Msa0336940:intron 40.0%
TGGTCACACACATAAACACA+TGG + chr2_4:56509784-56509803 Msa0336940:intron 40.0%
TCTCTTCTCTCCCATTTCTT+TGG + chr2_4:56509856-56509875 Msa0336940:intron 40.0%
!!! AGGGACCAAACCCTATTTTT+TGG - chr2_4:56509888-56509907 None:intergenic 40.0%
! AAAAAATAGGGTTTGGTCCC+TGG + chr2_4:56509887-56509906 Msa0336940:intron 40.0%
GAAAATACTTGTGTGGACCA+GGG - chr2_4:56509907-56509926 None:intergenic 40.0%
GAGAATTCTTTGCAGTATCC+TGG - chr2_4:56510080-56510099 None:intergenic 40.0%
TAAGGTGGATGAACTATCTG+AGG + chr2_4:56510242-56510261 Msa0336940:CDS 40.0%
CTGAGGCCAAATATCAAAAG+AGG + chr2_4:56510259-56510278 Msa0336940:CDS 40.0%
! TGTTGGCTGGTAACAATTTC+GGG - chr2_4:56510531-56510550 None:intergenic 40.0%
! TTTCTTCCGTTTTGCTACCA+TGG + chr2_4:56510570-56510589 Msa0336940:intron 40.0%
AGAGAGGCAATCTATGAGAA+TGG - chr2_4:56510600-56510619 None:intergenic 40.0%
GTCACCATTCAATAGCTATG+AGG - chr2_4:56510723-56510742 None:intergenic 40.0%
!!! CGTTTTTAAGTGTGAATCGG+TGG + chr2_4:56510806-56510825 Msa0336940:intron 40.0%
CGTTTAATGAGCTTATGGGT+CGG - chr2_4:56510985-56511004 None:intergenic 40.0%
CCACACGTTTAATGAGCTTA+TGG - chr2_4:56510990-56511009 None:intergenic 40.0%
CCATAAGCTCATTAAACGTG+TGG + chr2_4:56510987-56511006 Msa0336940:intron 40.0%
!! GGTCATGTGACTTGTTCTAT+TGG - chr2_4:56511495-56511514 None:intergenic 40.0%
AAGCATTCCTAACGATATGG+AGG - chr2_4:56511516-56511535 None:intergenic 40.0%
CGACTCAACCTATATCAATG+GGG - chr2_4:56511574-56511593 None:intergenic 40.0%
! GTCGACTCAACCTATATCAA+TGG - chr2_4:56511576-56511595 None:intergenic 40.0%
ACAAAGAGAGAAACCAAGGA+GGG - chr2_4:56511800-56511819 None:intergenic 40.0%
AACAAAGAGAGAAACCAAGG+AGG - chr2_4:56511801-56511820 None:intergenic 40.0%
GGTATAAGTGCTTCTCTAGT+TGG + chr2_4:56512161-56512180 Msa0336940:intron 40.0%
TTGTTGCATCGTGAGTTTGA+AGG + chr2_4:56512326-56512345 Msa0336940:intron 40.0%
TGTTGCATCGTGAGTTTGAA+GGG + chr2_4:56512327-56512346 Msa0336940:intron 40.0%
ACTAACTTCTCACCATCAAC+TGG + chr2_4:56512708-56512727 Msa0336940:intron 40.0%
CCCTAAAGAGATACCTTCTT+TGG - chr2_4:56512936-56512955 None:intergenic 40.0%
!! GTATCTCTTTAGGGTTCGTT+TGG + chr2_4:56512942-56512961 Msa0336940:intron 40.0%
CCATTGTAGGGTGATTATAG+GGG - chr2_4:56513888-56513907 None:intergenic 40.0%
! TGGCAATGACCTTCCTTTTA+TGG + chr2_4:56514059-56514078 Msa0336940:CDS 40.0%
CAAGAGAATGCACTTGAAGA+TGG - chr2_4:56514219-56514238 None:intergenic 40.0%
CCATTGTAAGGTGATTATGG+AGG - chr2_4:56514386-56514405 None:intergenic 40.0%
CCTCCATAATCACCTTACAA+TGG + chr2_4:56514383-56514402 Msa0336940:CDS 40.0%
AGGGAGAATAATTGGAGGAG+TGG - chr2_4:56509431-56509450 None:intergenic 45.0%
ACAGGCACACACCAAGAATT+TGG + chr2_4:56509482-56509501 Msa0336940:five_prime_UTR 45.0%
GTTCTCACCATGGTCTCTAA+AGG - chr2_4:56509542-56509561 None:intergenic 45.0%
!! AAAAGGCACTTGGACTCATG+AGG + chr2_4:56509586-56509605 Msa0336940:CDS 45.0%
CTAGGTATGGCTGTTGGAAT+TGG + chr2_4:56509636-56509655 Msa0336940:CDS 45.0%
TGGACCAAGACCACACAATT+GGG + chr2_4:56509759-56509778 Msa0336940:intron 45.0%
CAAACCCAATTGTGTGGTCT+TGG - chr2_4:56509766-56509785 None:intergenic 45.0%
CAAGACCACACAATTGGGTT+TGG + chr2_4:56509764-56509783 Msa0336940:intron 45.0%
TGTGACCAAACCCAATTGTG+TGG - chr2_4:56509772-56509791 None:intergenic 45.0%
GGAAAATACTTGTGTGGACC+AGG - chr2_4:56509908-56509927 None:intergenic 45.0%
ACTTGTTCCAACAGAACTCC+AGG + chr2_4:56510059-56510078 Msa0336940:intron 45.0%
!! TTTTCAGGGCTTGAAAGGTG+TGG + chr2_4:56510205-56510224 Msa0336940:intron 45.0%
! TTTCAGGGCTTGAAAGGTGT+GGG + chr2_4:56510206-56510225 Msa0336940:intron 45.0%
!! GCTGGTAACAATTTCGGGTT+GGG - chr2_4:56510526-56510545 None:intergenic 45.0%
TCTATGAGAATGGCAAGCCA+TGG - chr2_4:56510590-56510609 None:intergenic 45.0%
ATCAGAGCTTGCAGATTGAG+CGG + chr2_4:56510848-56510867 Msa0336940:intron 45.0%
CACATGACCTCCATATCGTT+AGG + chr2_4:56511506-56511525 Msa0336940:intron 45.0%
! TATAGGTTGAGTCGACGACT+TGG + chr2_4:56511580-56511599 Msa0336940:intron 45.0%
!! GAGAGAAGCATCAGCCAAAT+GGG - chr2_4:56512131-56512150 None:intergenic 45.0%
!! AGAGAGAAGCATCAGCCAAA+TGG - chr2_4:56512132-56512151 None:intergenic 45.0%
TTGGCTGATGCTTCTCTCTA+TGG + chr2_4:56512133-56512152 Msa0336940:intron 45.0%
ATGCTTCTCTCTATGGCTGA+TGG + chr2_4:56512140-56512159 Msa0336940:intron 45.0%
!! TCTCTTTAGGGTTCGTTTGG+TGG + chr2_4:56512945-56512964 Msa0336940:intron 45.0%
CAAGACAAATCGCTTGAAGC+TGG - chr2_4:56513748-56513767 None:intergenic 45.0%
CCCCTATAATCACCCTACAA+TGG + chr2_4:56513885-56513904 Msa0336940:CDS 45.0%
TCTTCGCAACCATCTTCAAG+CGG + chr2_4:56513973-56513992 Msa0336940:CDS 45.0%
CAAGAGAATCCGCTTGAAGA+TGG - chr2_4:56513985-56514004 None:intergenic 45.0%
!! AAAAATCTAAATTAATTTAA+GGG - chr2_4:56512758-56512777 None:intergenic 5.0%
!!! AAAAATATCAAAAATTATTT+TGG - chr2_4:56513089-56513108 None:intergenic 5.0%
!!! TTAATATTTCATTAAATTTT+AGG - chr2_4:56513112-56513131 None:intergenic 5.0%
GGCACACACCAAGAATTTGG+TGG + chr2_4:56509485-56509504 Msa0336940:five_prime_UTR 50.0%
! CTACCAGCCTTTAGAGACCA+TGG + chr2_4:56509532-56509551 Msa0336940:exon 50.0%
! TCACCATGGTCTCTAAAGGC+TGG - chr2_4:56509538-56509557 None:intergenic 50.0%
GTGGACCAAGACCACACAAT+TGG + chr2_4:56509758-56509777 Msa0336940:intron 50.0%
GCAGTATCCTGGAGTTCTGT+TGG - chr2_4:56510069-56510088 None:intergenic 50.0%
GTGGGAAGAGCTGTAGACTA+AGG + chr2_4:56510224-56510243 Msa0336940:CDS 50.0%
GGAAGAGCTGTAGACTAAGG+TGG + chr2_4:56510227-56510246 Msa0336940:CDS 50.0%
CTCTATCATGGCCTAACCCA+TGG + chr2_4:56510359-56510378 Msa0336940:intron 50.0%
! GGCTGGTAACAATTTCGGGT+TGG - chr2_4:56510527-56510546 None:intergenic 50.0%
GGCAAGCCATGGTAGCAAAA+CGG - chr2_4:56510579-56510598 None:intergenic 50.0%
GGGGCTGTCAAGTGTACAAA+CGG - chr2_4:56510670-56510689 None:intergenic 50.0%
AGAGAGAAACCAAGGAGGGA+GGG - chr2_4:56511796-56511815 None:intergenic 50.0%
AAGAGAGAAACCAAGGAGGG+AGG - chr2_4:56511797-56511816 None:intergenic 50.0%
!! GCTCAAAGCTTTGGCTTGAG+TGG + chr2_4:56512233-56512252 Msa0336940:intron 50.0%
!! ACCTCATTATCGGTTCTCCC+CGG - chr2_4:56513541-56513560 None:intergenic 50.0%
CACACACACCCACACTACAC+AGG + chr2_4:56509464-56509483 Msa0336940:five_prime_UTR 55.0%
GGTGTGTGCCTGTGTAGTGT+GGG - chr2_4:56509475-56509494 None:intergenic 55.0%
TGGTGTGTGCCTGTGTAGTG+TGG - chr2_4:56509476-56509495 None:intergenic 55.0%
GTCACAAGGGGTTCTCACCA+TGG - chr2_4:56509552-56509571 None:intergenic 55.0%
AGAAACCAAGGAGGGAGGGA+GGG - chr2_4:56511792-56511811 None:intergenic 55.0%
ACCGGGGAGAACCGATAATG+AGG + chr2_4:56513537-56513556 Msa0336940:CDS 55.0%
GAGAAACCAAGGAGGGAGGG+AGG - chr2_4:56511793-56511812 None:intergenic 60.0%
TCTCTCCCTCCCTCCCTCCT+TGG + chr2_4:56511784-56511803 Msa0336940:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 56509416 56514494 56509416 ID=Msa0336940;Name=Msa0336940
chr2_4 mRNA 56509416 56514494 56509416 ID=Msa0336940-mRNA-1;Parent=Msa0336940;Name=Msa0336940-mRNA-1;_AED=0.30;_eAED=0.30;_QI=135|0.5|0.66|1|1|0.66|3|0|414
chr2_4 exon 56509416 56509680 56509416 ID=Msa0336940-mRNA-1:exon:17264;Parent=Msa0336940-mRNA-1
chr2_4 exon 56510212 56510341 56510212 ID=Msa0336940-mRNA-1:exon:17265;Parent=Msa0336940-mRNA-1
chr2_4 exon 56513513 56514494 56513513 ID=Msa0336940-mRNA-1:exon:17266;Parent=Msa0336940-mRNA-1
chr2_4 five_prime_UTR 56509416 56509550 56509416 ID=Msa0336940-mRNA-1:five_prime_utr;Parent=Msa0336940-mRNA-1
chr2_4 CDS 56509551 56509680 56509551 ID=Msa0336940-mRNA-1:cds;Parent=Msa0336940-mRNA-1
chr2_4 CDS 56510212 56510341 56510212 ID=Msa0336940-mRNA-1:cds;Parent=Msa0336940-mRNA-1
chr2_4 CDS 56513513 56514494 56513513 ID=Msa0336940-mRNA-1:cds;Parent=Msa0336940-mRNA-1
Gene Sequence

>Msa0336940

ATGGTGAGAACCCCTTGTGACAATAATGGATTGAGAAAAGGCACTTGGACTCATGAGGAAGACAAAAAGTTGATTGCTTATGTAACTAGGTATGGCTGTTGGAATTGGCGACAACTACCTAAATTTGCAGGGCTTGAAAGGTGTGGGAAGAGCTGTAGACTAAGGTGGATGAACTATCTGAGGCCAAATATCAAAAGAGGGAACTTTAATCAACAAGAAGAAGAGATTATCATCAAACTTCATGAAAAACTGGGTAATAGATGGACCGTGATTGCTTCAAATTTACCGGGGAGAACCGATAATGAGGTAAAGAATCACTGGCACACTACCTTGAAGAAGCGTTTTATAAAGAATATTAAGTCTAAGCGTGGAAGGAGAAAAGCCAAAGATTCAAATTCAAATAATCACCCTATATTGGAAGAAGCCAATAAATTTGAAGGAGTTTTAGAGAACAACAATGATCCTAATATTGCAAATCAAATATCTTCACAACCAGCTTCAAGCGATTTGTCTTGCATAACAACGGAAACTGCAATTTTTGATGATAGTGACCTTTCTTTTATGGAAACATACATGGACAATTTTAGTGAGAATTTTTGGACAGAGCCATATATGATAGACAATTCATATGTCCCCTATAATCACCCTACAATGGAAGAAACCAAGAAACTTGACGGAGTTTTTGAGAACAACATCGATGCCAATATTACGAGTTCACTATCTTCGCAACCATCTTCAAGCGGATTCTCTTGCATAACAACAGAAAATTTAGCTTCCACTATATCACATGAAAATTCAGTTTTTGATGGCAATGACCTTCCTTTTATGGATGCATTATTCATGGAGACTGTGAGTGAAAATTTTATGACTGAGCCATATATGATAGACACTTTCTATGCCAATAAACTTGAAGGAGTTTTAGAGAACAGTGATCCTAATATTGCAAGTCGATTGTCTTCACAACCATCTTCAAGTGCATTCTCTTGCATAACAATGGATACTGCATCTACCACAATATCATATGAGAATCCAATTCTTGATGACAATGACCTTCATTTTATGGATGCATTCATAGAGGATTTGAGTGAGAATTTCTGGTCAGAGCCTTATATGATAGACAGTTCACATGTCCTCCATAATCACCTTACAATGGAAAATGTTACTTCCACAACATCACATGAAAATTTTGTTCTTGATGAAAATGACCTTCTTTTAATGGATGCATTATTCATGGAGACTGAG
Protein sequence

>Msa0336940

MVRTPCDNNGLRKGTWTHEEDKKLIAYVTRYGCWNWRQLPKFAGLERCGKSCRLRWMNYLRPNIKRGNFNQQEEEIIIKLHEKLGNRWTVIASNLPGRTDNEVKNHWHTTLKKRFIKNIKSKRGRRKAKDSNSNNHPILEEANKFEGVLENNNDPNIANQISSQPASSDLSCITTETAIFDDSDLSFMETYMDNFSENFWTEPYMIDNSYVPYNHPTMEETKKLDGVFENNIDANITSSLSSQPSSSGFSCITTENLASTISHENSVFDGNDLPFMDALFMETVSENFMTEPYMIDTFYANKLEGVLENSDPNIASRLSSQPSSSAFSCITMDTASTTISYENPILDDNDLHFMDAFIEDLSENFWSEPYMIDSSHVLHNHLTMENVTSTTSHENFVLDENDLLLMDALFMETE