AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1395360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1395360 MtrunA17_Chr7g0273791 90.176 397 23 1 1 381 1 397 0.0 742
Msa1395360 MtrunA17_Chr7g0273781 88.030 401 32 1 1 385 34 434 0.0 739
Msa1395360 MtrunA17_Chr7g0273731 81.612 397 57 1 1 381 84 480 0.0 686
Msa1395360 MtrunA17_Chr7g0273761 78.250 400 68 4 1 381 372 771 0.0 652
Msa1395360 MtrunA17_Chr7g0273761 76.800 250 57 1 131 379 32 281 1.67e-139 417
Msa1395360 MtrunA17_Chr5g0433641 77.667 403 73 2 1 386 1 403 0.0 649
Msa1395360 MtrunA17_Chr7g0273721 74.568 405 84 4 1 386 1 405 0.0 630
Msa1395360 MtrunA17_Chr1g0165671 58.706 402 139 5 1 382 18 412 4.61e-174 494
Msa1395360 MtrunA17_Chr1g0165661 54.156 397 161 5 3 381 2 395 2.42e-157 450
Msa1395360 MtrunA17_Chr1g0165681 53.652 397 163 5 3 381 2 395 6.40e-156 447
Msa1395360 MtrunA17_Chr1g0191081 56.608 401 153 5 3 385 11 408 6.11e-153 439
Msa1395360 MtrunA17_Chr1g0165711 50.378 397 139 6 3 382 2 357 1.24e-132 386
Msa1395360 MtrunA17_Chr7g0273741 87.121 132 17 0 1 132 1 132 1.09e-80 244
Msa1395360 MtrunA17_Chr3g0098961 79.545 132 27 0 1 132 4 135 1.10e-72 224
Msa1395360 MtrunA17_Chr6g0471381 54.412 204 84 4 182 381 6 204 5.66e-70 221
Msa1395360 MtrunA17_Chr8g0386141 32.391 389 232 9 8 374 5 384 7.15e-65 213
Msa1395360 MtrunA17_Chr6g0471971 46.748 246 99 6 147 386 2 221 1.74e-63 202
Msa1395360 MtrunA17_Chr6g0471371 66.154 130 44 0 3 132 2 131 5.43e-61 194
Msa1395360 MtrunA17_Chr3g0132001 31.347 386 239 8 10 376 14 392 7.79e-61 202
Msa1395360 MtrunA17_Chr1g0165741 67.188 128 42 0 3 130 2 129 1.34e-60 192
Msa1395360 MtrunA17_Chr8g0353421 65.354 127 44 0 3 129 2 128 6.61e-60 190
Msa1395360 MtrunA17_Chr7g0224391 30.287 383 240 7 14 376 20 395 1.10e-58 197
Msa1395360 MtrunA17_Chr7g0273701 73.504 117 31 0 270 386 1 117 2.06e-56 182
Msa1395360 MtrunA17_Chr3g0141851 31.807 393 226 13 13 376 14 393 2.25e-49 172
Msa1395360 MtrunA17_Chr7g0273691 78.351 97 20 1 150 245 1 97 1.10e-48 160
Msa1395360 MtrunA17_Chr4g0027071 29.847 392 232 13 17 373 19 402 9.62e-45 160
Msa1395360 MtrunA17_Chr2g0306321 29.668 391 240 12 18 376 26 413 1.17e-44 160
Msa1395360 MtrunA17_Chr7g0270771 30.303 297 153 8 6 275 1 270 1.41e-41 147
Msa1395360 MtrunA17_Chr2g0334001 27.820 399 253 11 17 386 10 402 1.42e-41 151
Msa1395360 MtrunA17_Chr4g0001861 27.851 377 233 11 42 386 34 403 4.96e-40 147
Msa1395360 MtrunA17_Chr3g0113821 28.358 402 243 12 9 376 4 394 5.50e-37 139
Msa1395360 MtrunA17_Chr8g0371821 26.230 366 239 9 36 376 28 387 3.00e-35 134
Msa1395360 MtrunA17_Chr6g0471891 41.317 167 71 2 216 381 1 141 8.26e-35 128
Msa1395360 MtrunA17_Chr3g0106691 30.422 332 203 10 17 323 63 391 7.74e-32 125
Msa1395360 MtrunA17_Chr2g0283361 28.493 365 228 10 31 370 25 381 2.78e-31 123
Msa1395360 MtrunA17_Chr3g0087401 26.024 415 238 14 18 378 10 409 9.64e-31 122
Msa1395360 MtrunA17_Chr7g0253501 28.969 359 211 15 17 338 9 360 3.08e-29 118
Msa1395360 MtrunA17_Chr4g0072041 25.182 413 253 14 9 376 15 416 2.16e-28 115
Msa1395360 MtrunA17_Chr6g0470591 29.431 299 175 14 64 333 70 361 7.03e-28 114
Msa1395360 MtrunA17_Chr5g0442691 24.390 410 265 13 8 375 31 437 1.86e-27 113
Msa1395360 MtrunA17_Chr3g0106661 26.551 403 239 13 17 373 17 408 8.34e-27 111
Msa1395360 MtrunA17_Chr2g0311401 28.148 270 175 7 132 386 7 272 1.03e-26 108
Msa1395360 MtrunA17_Chr5g0442701 25.366 410 261 15 8 375 8 414 1.06e-26 110
Msa1395360 MtrunA17_Chr4g0054081 24.103 390 239 12 36 378 34 413 1.76e-26 110
Msa1395360 MtrunA17_Chr7g0253531 27.933 358 214 16 16 336 8 358 1.81e-26 110
Msa1395360 MtrunA17_Chr1g0165731 44.037 109 57 3 147 253 2 108 5.44e-26 100
Msa1395360 MtrunA17_Chr3g0106711 34.574 188 101 4 17 182 17 204 6.49e-26 104
Msa1395360 MtrunA17_Chr3g0106721 27.931 290 179 5 60 323 63 348 1.31e-25 107
Msa1395360 MtrunA17_Chr7g0253541 25.205 365 216 15 47 376 42 384 5.64e-25 105
Msa1395360 MtrunA17_Chr5g0442721 24.507 355 225 11 62 375 64 416 1.34e-24 105
Msa1395360 MtrunA17_Chr7g0273681 97.561 41 1 0 92 132 1 41 4.47e-24 94.0
Msa1395360 MtrunA17_Chr3g0095731 24.000 375 237 12 43 374 43 412 2.83e-23 100
Msa1395360 MtrunA17_Chr3g0095721 24.138 348 223 9 65 374 72 416 1.33e-22 99.0
Msa1395360 MtrunA17_Chr7g0252731 25.064 391 226 13 17 374 24 380 2.14e-22 98.2
Msa1395360 MtrunA17_Chr3g0106761 28.920 287 169 9 79 337 28 307 1.31e-21 95.5
Msa1395360 MtrunA17_Chr7g0273671 95.349 43 2 0 1 43 1 43 2.27e-21 86.3
Msa1395360 MtrunA17_Chr4g0004691 32.749 171 87 6 18 169 12 173 2.64e-21 90.5
Msa1395360 MtrunA17_Chr3g0106741 28.772 285 172 8 79 337 59 338 2.90e-21 95.1
Msa1395360 MtrunA17_Chr8g0354371 24.060 399 252 14 13 381 20 397 1.68e-20 92.8
Msa1395360 MtrunA17_Chr7g0235531 22.192 365 229 11 17 340 11 361 1.02e-19 90.5
Msa1395360 MtrunA17_Chr5g0408911 23.698 384 252 13 23 377 33 404 1.62e-19 89.7
Msa1395360 MtrunA17_Chr5g0438701 23.096 394 243 15 16 374 9 377 1.21e-18 87.0
Msa1395360 MtrunA17_Chr3g0123061 22.333 403 247 20 6 376 1 369 5.99e-18 85.1
Msa1395360 MtrunA17_Chr8g0376891 29.518 166 95 6 16 164 9 169 4.58e-16 79.3
Msa1395360 MtrunA17_Chr3g0134091 25.157 318 196 11 27 315 33 337 1.19e-15 78.2
Msa1395360 MtrunA17_Chr8g0376901 30.120 166 94 6 16 164 9 169 1.37e-15 78.2
Msa1395360 MtrunA17_Chr3g0134061 24.211 380 233 15 37 373 42 409 7.47e-15 75.9
Msa1395360 MtrunA17_Chr8g0376911 22.304 408 234 16 16 374 9 382 1.20e-14 75.1
Msa1395360 MtrunA17_Chr5g0414431 57.143 56 19 1 52 107 2 52 2.12e-14 67.4
Msa1395360 MtrunA17_Chr1g0199561 22.518 413 255 16 16 383 9 401 4.11e-14 73.6
Msa1395360 MtrunA17_Chr3g0125001 22.656 384 240 15 24 373 25 385 4.96e-14 73.2
Msa1395360 MtrunA17_Chr3g0134121 23.360 381 249 14 25 373 31 400 8.43e-14 72.8
Msa1395360 MtrunA17_Chr1g0165721 62.745 51 19 0 331 381 1 51 9.64e-14 67.4
Msa1395360 MtrunA17_Chr4g0010361 22.276 413 251 19 24 384 25 419 8.77e-13 69.3
Msa1395360 MtrunA17_Chr3g0106631 27.922 154 104 3 132 280 2 153 1.24e-12 65.5
Msa1395360 MtrunA17_Chr8g0361781 27.027 185 103 8 16 177 9 184 3.62e-12 67.4
Msa1395360 MtrunA17_Chr3g0134071 24.522 314 188 12 37 315 44 343 5.02e-12 67.4
Msa1395360 MtrunA17_Chr3g0134041 22.472 356 211 13 62 373 63 397 5.73e-12 67.0
Msa1395360 MtrunA17_Chr1g0169471 35.955 89 47 3 90 168 13 101 6.00e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1395360 AT5G17540.1 49.005 402 179 8 3 383 2 398 2.26e-127 375
Msa1395360 AT3G03480.1 48.762 404 182 8 2 385 11 409 6.77e-123 363
Msa1395360 AT3G48720.1 31.450 407 250 11 1 386 1 399 1.19e-64 213
Msa1395360 AT5G41040.2 30.151 398 249 8 1 376 8 398 7.10e-62 206
Msa1395360 AT5G41040.1 30.151 398 249 8 1 376 24 414 9.06e-62 206
Msa1395360 AT5G63560.1 31.658 398 233 10 3 376 2 384 1.93e-59 199
Msa1395360 AT1G27620.1 32.134 389 224 12 14 376 13 387 1.42e-51 178
Msa1395360 AT1G03390.1 29.293 396 236 13 14 376 26 410 3.45e-40 148
Msa1395360 AT5G57840.1 29.000 400 240 12 10 374 3 393 3.62e-39 145
Msa1395360 AT2G40230.1 28.861 395 230 13 17 376 12 390 4.94e-39 145
Msa1395360 AT5G48930.1 26.781 407 248 12 17 386 10 403 8.24e-39 144
Msa1395360 AT3G62160.1 27.047 403 243 13 6 380 1 380 4.34e-36 137
Msa1395360 AT5G07080.1 27.273 407 250 13 3 373 7 403 1.20e-34 133
Msa1395360 AT2G19070.1 26.485 404 244 12 18 376 12 407 1.43e-34 133
Msa1395360 AT1G28680.1 27.296 392 249 13 7 370 1 384 1.19e-31 125
Msa1395360 AT3G47170.1 25.886 367 217 11 2 323 4 360 1.20e-31 125
Msa1395360 AT1G28680.2 27.901 362 230 11 7 343 1 356 4.00e-31 122
Msa1395360 AT1G65450.1 25.707 389 249 12 17 375 25 403 2.65e-29 118
Msa1395360 AT2G25150.1 26.196 397 239 14 16 373 19 400 1.20e-28 116
Msa1395360 AT2G23510.1 26.485 404 253 15 3 373 6 398 2.55e-27 112
Msa1395360 AT1G31490.1 25.132 378 234 13 31 377 29 388 4.11e-27 112
Msa1395360 AT1G32910.1 26.630 368 222 13 44 375 46 401 2.66e-24 104
Msa1395360 AT1G78990.1 25.205 365 232 12 43 376 45 399 1.28e-22 99.4
Msa1395360 AT3G26040.1 23.114 411 230 15 16 376 9 383 4.45e-22 97.8
Msa1395360 AT5G16410.1 22.444 401 267 14 8 376 34 422 5.30e-19 89.0
Msa1395360 AT4G15390.1 22.951 427 263 16 5 387 3 407 2.19e-18 87.0
Msa1395360 AT4G15390.2 22.951 427 263 16 5 387 3 407 2.19e-18 87.0
Msa1395360 AT3G50280.1 24.548 387 234 15 24 373 28 393 8.25e-18 85.1
Msa1395360 AT5G67150.1 24.519 416 237 15 24 384 30 423 1.97e-17 84.0
Msa1395360 AT5G23970.1 25.000 396 230 14 16 374 9 374 8.60e-16 79.0
Msa1395360 AT5G07860.1 24.935 385 239 14 37 385 45 415 1.00e-15 79.0
Msa1395360 AT4G31910.1 22.011 368 237 12 47 370 46 407 4.59e-15 77.0
Msa1395360 AT1G24430.1 22.167 406 240 12 16 379 11 382 4.88e-15 76.6
Msa1395360 AT5G07850.1 23.889 360 231 14 62 385 67 419 7.32e-15 76.3
Msa1395360 AT1G24420.2 28.832 274 151 10 16 264 11 265 3.28e-14 74.3
Msa1395360 AT1G24420.1 28.832 274 151 10 16 264 11 265 3.28e-14 74.3
Msa1395360 AT5G47950.1 25.357 280 165 8 16 270 12 272 6.37e-14 73.2
Msa1395360 AT5G07870.1 24.384 406 255 16 22 385 32 427 1.16e-13 72.8
Msa1395360 AT3G30280.1 22.167 406 261 14 10 378 6 393 4.87e-13 70.5
Msa1395360 AT3G50270.1 22.596 416 247 15 24 384 30 425 5.79e-13 70.5
Msa1395360 AT1G65450.3 24.082 245 167 7 142 374 1 238 3.09e-11 63.9

Find 137 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTTCCTTAATGGTATT+TGG 0.143670 tig0021940:+3836 None:intergenic
ATAATCAACTTGGCCTAATA+AGG 0.195707 tig0021940:+2910 None:intergenic
AGGCTCTTCGAAGTGAATTT+TGG 0.201766 tig0021940:-3368 Msa1395360:CDS
GCATGTCTAAGAACCTTAAT+AGG 0.234481 tig0021940:+6088 None:intergenic
CACTCGGTGTAAGATGATTT+TGG 0.236072 tig0021940:+3169 None:intergenic
CCTGCAGTGGTGACGGCCGC+TGG 0.241487 tig0021940:+3557 None:intergenic
AGCAGTATCTTCTTCCTTAA+TGG 0.250041 tig0021940:+3829 None:intergenic
GCATTCTGTGGCCGATCTTA+TGG 0.264577 tig0021940:-3456 Msa1395360:CDS
GGCCGATCTTATGGTTATTA+AGG 0.274324 tig0021940:-3447 Msa1395360:CDS
AAATTTGTTCGTATTCAAAA+TGG 0.285497 tig0021940:+3864 None:intergenic
ATCCATTTGCGGGAAGGATT+AGG 0.292545 tig0021940:-6039 Msa1395360:CDS
CCATTCAACCTGTGTGGAAT+AGG 0.307886 tig0021940:-3928 Msa1395360:CDS
TCTCCGTTTATATTCTTGTA+TGG 0.307915 tig0021940:+3273 None:intergenic
CATTGTATGGTTCCAATTCA+TGG 0.325987 tig0021940:+4021 None:intergenic
TCCATTTGCGGGAAGGATTA+GGG 0.331223 tig0021940:-6038 Msa1395360:CDS
TCGGCACTTGTTGGATATTA+CGG 0.332866 tig0021940:-3596 Msa1395360:CDS
GAACATCATATAGGAGTTCT+TGG 0.342842 tig0021940:+5894 None:intergenic
TCTTCAGAGGGCAAACAAAT+TGG 0.343549 tig0021940:+3234 None:intergenic
GGGTCTTTCTCTGCCATTGA+TGG 0.353609 tig0021940:+6109 None:intergenic
TTGATCAATTGAATACAAAA+AGG 0.353831 tig0021940:+2760 None:intergenic
ACAAACTACAACAAACTATA+AGG 0.374547 tig0021940:+3125 None:intergenic
CATAGCCACGCTTCGTCTCT+TGG 0.377968 tig0021940:-3768 Msa1395360:CDS
ATTCTTGTATGGGACGATAT+AGG 0.378210 tig0021940:+3284 None:intergenic
CATGACTGCATGGGCAGAAA+TGG 0.383185 tig0021940:-3972 Msa1395360:CDS
GGATGGGGTGAAGGCGTGTA+TGG 0.384414 tig0021940:-3347 Msa1395360:CDS
GGCAGAGAAAGACCCTATTA+AGG 0.385270 tig0021940:-6101 Msa1395360:CDS
TCCCTAATCCTTCCCGCAAA+TGG 0.387166 tig0021940:+6037 None:intergenic
TCATCTCTATGATTCTTGTT+AGG 0.388888 tig0021940:+2729 None:intergenic
CTCTAAAGAAGAAAGATTGA+TGG 0.391556 tig0021940:+3798 None:intergenic
GATTCCTGTTAAATAAAGTT+GGG 0.395220 tig0021940:-3094 Msa1395360:three_prime_UTR
CTCAAAAGCACTGCAGTTAG+AGG 0.400279 tig0021940:-3681 Msa1395360:CDS
GGAGAGGAGAGAAGGGAATG+AGG 0.400565 tig0021940:-2809 Msa1395360:three_prime_UTR
GGGAGCTAGGCGCAAGTTGA+TGG 0.401324 tig0021940:-6014 Msa1395360:CDS
GAGGTTTAACGCTAACAATT+CGG 0.409376 tig0021940:-3615 Msa1395360:CDS
GTTTATTACTATCCATTTGC+GGG 0.409976 tig0021940:-6049 Msa1395360:CDS
AAGCTTTGTGGAAACCCATT+TGG 0.411357 tig0021940:-3533 Msa1395360:CDS
AACTCCACTGCATAACCAAA+TGG 0.411556 tig0021940:+3518 None:intergenic
GGTTCATAGTGGCCATGAAT+TGG 0.412673 tig0021940:-4033 Msa1395360:CDS
GCTAACAATTCGGCACTTGT+TGG 0.414011 tig0021940:-3605 Msa1395360:CDS
CTCCGTTTATATTCTTGTAT+GGG 0.416384 tig0021940:+3274 None:intergenic
TGATTCCTGTTAAATAAAGT+TGG 0.425021 tig0021940:-3095 Msa1395360:three_prime_UTR
CCAGCGGCCGTCACCACTGC+AGG 0.431399 tig0021940:-3557 Msa1395360:CDS
GGTGTTTATTTACAACTGTA+AGG 0.432833 tig0021940:-3421 Msa1395360:CDS
CATTCAACCTGTGTGGAATA+GGG 0.435556 tig0021940:-3927 Msa1395360:CDS
GATGTAACACTTGATCAATT+TGG 0.436107 tig0021940:-5947 Msa1395360:CDS
TCATGAGGAGTGGGTGCGGC+TGG 0.441956 tig0021940:+6211 None:intergenic
CCTATTCCACACAGGTTGAA+TGG 0.443311 tig0021940:+3928 None:intergenic
GTCCCATACAAGAATATAAA+CGG 0.444263 tig0021940:-3276 Msa1395360:three_prime_UTR
GAGAGGAGAGAAGGGAATGA+GGG 0.454300 tig0021940:-2808 Msa1395360:three_prime_UTR
TAATCAACTTGGCCTAATAA+GGG 0.454961 tig0021940:+2911 None:intergenic
ACCACTGCAGGGAAGCTTTG+TGG 0.467325 tig0021940:-3545 Msa1395360:CDS
TGGGGTGAAGGCGTGTATGG+TGG 0.470395 tig0021940:-3344 Msa1395360:CDS
CAGCTGCATCACCCATTGTA+TGG 0.471746 tig0021940:+4008 None:intergenic
TTAGTTCTATTCAAATCTGT+TGG 0.472047 tig0021940:-2830 Msa1395360:three_prime_UTR
GAAGAGGTTTGCAAAAGAGT+TGG 0.476327 tig0021940:-3208 Msa1395360:three_prime_UTR
CATGTCTAAGAACCTTAATA+GGG 0.477028 tig0021940:+6089 None:intergenic
GTGCATTGACGAAGGTGAAA+TGG 0.485395 tig0021940:+3743 None:intergenic
AATATATTACAATAACAAAC+AGG 0.491131 tig0021940:+3040 None:intergenic
CTATCGTCACGAACCATCAA+TGG 0.495351 tig0021940:-6122 Msa1395360:CDS
TGTTTATTACTATCCATTTG+CGG 0.499605 tig0021940:-6050 Msa1395360:CDS
GTGGAATAGGGAGATTCTAA+TGG 0.500842 tig0021940:-3915 Msa1395360:CDS
CTGCAGTGGTGACGGCCGCT+GGG 0.500955 tig0021940:+3558 None:intergenic
CTGAGGCTGGAACATCATAT+AGG 0.505153 tig0021940:+5885 None:intergenic
TGGAGTTGCAAAAGGTGGGC+TGG 0.506875 tig0021940:-3324 Msa1395360:CDS
GCGGCTGGAAGCACCAACTC+TGG 0.506946 tig0021940:+6226 None:intergenic
ATCTGTTGGAGAGGAGAGAA+GGG 0.507839 tig0021940:-2816 Msa1395360:three_prime_UTR
GAAGGATTAGGGAGGGAGCT+AGG 0.514002 tig0021940:-6027 Msa1395360:CDS
TTTCAGATTTGACTCGTGCT+AGG 0.515705 tig0021940:-3388 Msa1395360:CDS
AACTTCATGAGGAGTGGGTG+CGG 0.526875 tig0021940:+6207 None:intergenic
AGTTTAACTTCATGAGGAGT+GGG 0.527780 tig0021940:+6202 None:intergenic
AATCTGTTGGAGAGGAGAGA+AGG 0.528523 tig0021940:-2817 Msa1395360:three_prime_UTR
ACTCCACTGCATAACCAAAT+GGG 0.532239 tig0021940:+3519 None:intergenic
AGTTCTTGGAAGCAAGGGAA+TGG 0.536296 tig0021940:+5908 None:intergenic
AAGGTAGACATCACAAAACT+AGG 0.537832 tig0021940:+3144 None:intergenic
AAGCTTCCCTGCAGTGGTGA+CGG 0.539271 tig0021940:+3550 None:intergenic
CATACAATGGGTGATGCAGC+TGG 0.540298 tig0021940:-4007 Msa1395360:CDS
TCCACAAAGCTTCCCTGCAG+TGG 0.542424 tig0021940:+3544 None:intergenic
ATTACTATCCATTTGCGGGA+AGG 0.544097 tig0021940:-6045 Msa1395360:CDS
GTTAAACCTCGAGCGTGCAT+TGG 0.546237 tig0021940:+3628 None:intergenic
TTCCTTAATAACCATAAGAT+CGG 0.546586 tig0021940:+3445 None:intergenic
TCTGACATTGATGATCAAGA+AGG 0.548394 tig0021940:-6175 Msa1395360:CDS
TATAGGAGTTCTTGGAAGCA+AGG 0.549594 tig0021940:+5902 None:intergenic
ATCTTATGGTTATTAAGGAA+CGG 0.549803 tig0021940:-3442 Msa1395360:CDS
ATGAATTGGAACCATACAAT+GGG 0.552002 tig0021940:-4019 Msa1395360:CDS
GCGGAGGTGCCAACCAGAGT+TGG 0.552570 tig0021940:-6239 Msa1395360:CDS
CTGGAAGCACCAACTCTGGT+TGG 0.561668 tig0021940:+6230 None:intergenic
GAGTTTAACTTCATGAGGAG+TGG 0.565045 tig0021940:+6201 None:intergenic
ATTCCTGTTAAATAAAGTTG+GGG 0.566024 tig0021940:-3093 Msa1395360:three_prime_UTR
TGCCCTCTGAAGATATGAAG+AGG 0.566120 tig0021940:-3224 Msa1395360:three_prime_UTR
AACATATGTAAAGCAGCCTA+AGG 0.567330 tig0021940:+2939 None:intergenic
TGAGACAATTCATGACTGCA+TGG 0.568023 tig0021940:-3982 Msa1395360:CDS
GAGAGGAGTTTAACTTCATG+AGG 0.572367 tig0021940:+6196 None:intergenic
GAGACAATTCATGACTGCAT+GGG 0.576060 tig0021940:-3981 Msa1395360:CDS
TGACGATAGATAAATATGAC+AGG 0.579372 tig0021940:+6136 None:intergenic
ATAGGAGTTCTTGGAAGCAA+GGG 0.581422 tig0021940:+5903 None:intergenic
GTCACACGTCTCAAGTGTGG+TGG 0.581788 tig0021940:-4055 Msa1395360:CDS
GTGTATGGTGGAGTTGCAAA+AGG 0.584396 tig0021940:-3332 Msa1395360:CDS
AAACCTCTTCATATCTTCAG+AGG 0.585787 tig0021940:+3221 None:intergenic
TTCCACACAGGTTGAATGGA+AGG 0.590931 tig0021940:+3932 None:intergenic
GGGACGATATAGGTTACTCC+AGG 0.594353 tig0021940:+3294 None:intergenic
TCTATTCAAATCTGTTGGAG+AGG 0.596463 tig0021940:-2825 Msa1395360:three_prime_UTR
ATGGTGGATTGTACCGGTGA+GGG 0.599240 tig0021940:-5995 Msa1395360:CDS
TATGGTGGAGTTGCAAAAGG+TGG 0.602580 tig0021940:-3329 Msa1395360:CDS
ATCACAAAACTAGGAGCACT+CGG 0.604510 tig0021940:+3153 None:intergenic
AACCTCTTCATATCTTCAGA+GGG 0.608993 tig0021940:+3222 None:intergenic
AGCTAGGCGCAAGTTGATGG+TGG 0.609062 tig0021940:-6011 Msa1395360:CDS
AAACCCATTTGGTTATGCAG+TGG 0.611003 tig0021940:-3522 Msa1395360:CDS
AATAAACATGACACCCTCAC+CGG 0.617483 tig0021940:+5982 None:intergenic
TCTTGGAAGCAAGGGAATGG+AGG 0.619806 tig0021940:+5911 None:intergenic
CAAGTGTGGTGGGTTCATAG+TGG 0.622481 tig0021940:-4044 Msa1395360:CDS
TCACACGTCTCAAGTGTGGT+GGG 0.628748 tig0021940:-4054 Msa1395360:CDS
TGCTATATAATGATAATGAA+AGG 0.634415 tig0021940:-3063 Msa1395360:three_prime_UTR
ATTAAAAGCTGAAGTTACAG+AGG 0.635766 tig0021940:-3486 Msa1395360:CDS
AAGTTGATGGTGGATTGTAC+CGG 0.636458 tig0021940:-6001 Msa1395360:CDS
TGTCATGTTTATTGAAGCTG+AGG 0.637800 tig0021940:-5972 Msa1395360:CDS
CATGAATTGGAACCATACAA+TGG 0.637861 tig0021940:-4020 Msa1395360:CDS
GTCCTTCCATTCAACCTGTG+TGG 0.637995 tig0021940:-3934 Msa1395360:CDS
AAAGAGTTGGATGAGATGCT+TGG 0.638972 tig0021940:-3195 Msa1395360:three_prime_UTR
GCAGTTAGAGGCAAATGAAG+AGG 0.640371 tig0021940:-3669 Msa1395360:CDS
GGTTGCATGTAATGCGTGGA+GGG 0.643184 tig0021940:+3885 None:intergenic
AGAATCTCCCTATTCCACAC+AGG 0.648794 tig0021940:+3920 None:intergenic
ATGGTGGAGTTGCAAAAGGT+GGG 0.653723 tig0021940:-3328 Msa1395360:CDS
TTCCTGTTAAATAAAGTTGG+GGG 0.657169 tig0021940:-3092 Msa1395360:three_prime_UTR
GCATCGCCAATGCACGCTCG+AGG 0.662333 tig0021940:-3634 Msa1395360:CDS
CAGGTCACACGTCTCAAGTG+TGG 0.663378 tig0021940:-4058 Msa1395360:CDS
TTTGCGGGAAGGATTAGGGA+GGG 0.667184 tig0021940:-6034 Msa1395360:CDS
GATGGTGGATTGTACCGGTG+AGG 0.671021 tig0021940:-5996 Msa1395360:CDS
AGAGGAATACATGCATTCTG+TGG 0.672300 tig0021940:-3468 Msa1395360:CDS
TGGAACCAAGAGACGAAGCG+TGG 0.675197 tig0021940:+3763 None:intergenic
GCATGGGCAGAAATGGCTCG+AGG 0.681407 tig0021940:-3965 Msa1395360:CDS
CTTGATCATCAATGTCAGAG+AGG 0.682333 tig0021940:+6179 None:intergenic
TGAAGTGATAAGATCGAATG+TGG 0.689533 tig0021940:+3721 None:intergenic
AAATGGTTGCATGTAATGCG+TGG 0.690356 tig0021940:+3881 None:intergenic
ATTTGCGGGAAGGATTAGGG+AGG 0.706760 tig0021940:-6035 Msa1395360:CDS
CGAATGTGGTGCATTGACGA+AGG 0.710870 tig0021940:+3735 None:intergenic
TGGTTGCATGTAATGCGTGG+AGG 0.714540 tig0021940:+3884 None:intergenic
CATCGTTAATGTTCACAGTG+CGG 0.731695 tig0021940:-6258 Msa1395360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTTAATTAATTTTT+TGG - tig0021940:3461-3480 Msa1395360:CDS 0.0%
!!! AACTTGATAATTAATATAAT+TGG + tig0021940:3174-3193 None:intergenic 10.0%
!!! ATACTTTTGAAAAAAAAATT+AGG + tig0021940:3914-3933 None:intergenic 10.0%
!!! TATAATTTATTGGTTTTTAA+CGG + tig0021940:4724-4743 None:intergenic 10.0%
!! AATAATAAAAACAAAGAATA+GGG + tig0021940:6019-6038 None:intergenic 10.0%
!! AAATAATAAAAACAAAGAAT+AGG + tig0021940:6020-6039 None:intergenic 10.0%
!!! TTCTTTGTTTTTATTATTTT+CGG - tig0021940:6021-6040 Msa1395360:CDS 10.0%
!!! AAATCGAATTATTTTAGTTA+CGG + tig0021940:3838-3857 None:intergenic 15.0%
!!! TAACTAAAATAATTCGATTT+TGG - tig0021940:3537-3556 Msa1395360:CDS 15.0%
!!! TAACTAAAATAATTCGATTT+TGG + tig0021940:3537-3556 None:intergenic 15.0%
!!! TAACTAAAATAATTCGATTT+TGG + tig0021940:3537-3556 None:intergenic 15.0%
!!! ATTCAAGAATATTATGTTTT+CGG - tig0021940:4238-4257 Msa1395360:intron 15.0%
!!! TTTTTCTTAAAAACATATGA+TGG + tig0021940:4358-4377 None:intergenic 15.0%
!!! TTGATAGTTTTTTATCATTT+GGG + tig0021940:4595-4614 None:intergenic 15.0%
!!! AATTCATATGTTTTCTTTAA+TGG + tig0021940:4796-4815 None:intergenic 15.0%
!! TATTAAGTAAAGATATATCT+AGG + tig0021940:4901-4920 None:intergenic 15.0%
!!! TATTAGATTTAAAATATGAC+AGG - tig0021940:4919-4938 Msa1395360:intron 15.0%
!! AATATATTACAATAACAAAC+AGG + tig0021940:5959-5978 None:intergenic 15.0%
!! ATAATAAAAACAAAGAATAG+GGG + tig0021940:6018-6037 None:intergenic 15.0%
!! TATCCATGTTAATAACATAA+AGG - tig0021940:3318-3337 Msa1395360:CDS 20.0%
!!! AATCGAATTATTTTAGTTAC+GGG + tig0021940:3536-3555 None:intergenic 20.0%
!! ATAAAAAAAATTTACACACC+TGG - tig0021940:3740-3759 Msa1395360:CDS 20.0%
!!! AATCGAATTATTTTAGTTAG+AGG - tig0021940:3839-3858 Msa1395360:CDS 20.0%
!!! ATCGAATTATTTTAGTTAGA+GGG - tig0021940:3840-3859 Msa1395360:CDS 20.0%
!!! AATCGAATTATTTTAGTTAG+AGG - tig0021940:3839-3858 Msa1395360:CDS 20.0%
!!! ATCGAATTATTTTAGTTAGA+GGG - tig0021940:3840-3859 Msa1395360:CDS 20.0%
!!! GTTGATAGTTTTTTATCATT+TGG + tig0021940:4596-4615 None:intergenic 20.0%
!! AAAACCAATAAATTATAACC+AGG - tig0021940:4727-4746 Msa1395360:intron 20.0%
!! TTGTAAACTTGTAATCAATT+CGG + tig0021940:4874-4893 None:intergenic 20.0%
!!! AAATTTGTTCGTATTCAAAA+TGG + tig0021940:5135-5154 None:intergenic 20.0%
!!! TGCTATATAATGATAATGAA+AGG - tig0021940:5933-5952 Msa1395360:CDS 20.0%
!!! AAAAAAAGGTATAATCAACT+TGG + tig0021940:6099-6118 None:intergenic 20.0%
!! TTGATCAATTGAATACAAAA+AGG + tig0021940:6239-6258 None:intergenic 20.0%
! TGTTTATTACTATCCATTTG+CGG - tig0021940:2946-2965 Msa1395360:three_prime_UTR 25.0%
! AAGCCTTTATGTTATTAACA+TGG + tig0021940:3324-3343 None:intergenic 25.0%
!!! ATCGAATTATTTTAGTTACG+GGG + tig0021940:3535-3554 None:intergenic 25.0%
! GGTTGTTCATAATTTAACTA+CGG + tig0021940:4469-4488 None:intergenic 25.0%
! ATTCCAAATTATGTAACATC+CGG - tig0021940:4569-4588 Msa1395360:intron 25.0%
! CTTAGTTTACTTTCAATGTT+GGG + tig0021940:4677-4696 None:intergenic 25.0%
! TCTTAGTTTACTTTCAATGT+TGG + tig0021940:4678-4697 None:intergenic 25.0%
! TCAACCTGGTTATAATTTAT+TGG + tig0021940:4734-4753 None:intergenic 25.0%
!! AAGTGCAAAGCTTTTTAAAT+GGG + tig0021940:4757-4776 None:intergenic 25.0%
!! TAAGTGCAAAGCTTTTTAAA+TGG + tig0021940:4758-4777 None:intergenic 25.0%
!! ATCTTATCACTTCATGTTTT+TGG - tig0021940:5284-5303 Msa1395360:intron 25.0%
! TTCCTTAATAACCATAAGAT+CGG + tig0021940:5554-5573 None:intergenic 25.0%
! ATCTTATGGTTATTAAGGAA+CGG - tig0021940:5554-5573 Msa1395360:intron 25.0%
! ACAAACTACAACAAACTATA+AGG + tig0021940:5874-5893 None:intergenic 25.0%
! TGATTCCTGTTAAATAAAGT+TGG - tig0021940:5901-5920 Msa1395360:CDS 25.0%
! GATTCCTGTTAAATAAAGTT+GGG - tig0021940:5902-5921 Msa1395360:CDS 25.0%
! ATTCCTGTTAAATAAAGTTG+GGG - tig0021940:5903-5922 Msa1395360:CDS 25.0%
!!! ATATGTTTTAGTCCCTTATT+AGG - tig0021940:6073-6092 Msa1395360:CDS 25.0%
!! GAAGTAAGTTTTTGTTAGTA+TGG - tig0021940:6142-6161 Msa1395360:CDS 25.0%
!!! TTAGTTCTATTCAAATCTGT+TGG - tig0021940:6166-6185 Msa1395360:CDS 25.0%
! TCAATTGAATACAAAAAGGA+TGG + tig0021940:6235-6254 None:intergenic 25.0%
TGACGATAGATAAATATGAC+AGG + tig0021940:2863-2882 None:intergenic 30.0%
CATGTCTAAGAACCTTAATA+GGG + tig0021940:2910-2929 None:intergenic 30.0%
GTTTATTACTATCCATTTGC+GGG - tig0021940:2947-2966 Msa1395360:three_prime_UTR 30.0%
GATGTAACACTTGATCAATT+TGG - tig0021940:3049-3068 Msa1395360:three_prime_UTR 30.0%
!! AGCATTGACTTAGTCAAAAT+TGG + tig0021940:3401-3420 None:intergenic 30.0%
!!! TTTTGGCTTAATAGCAGTTT+TGG - tig0021940:3478-3497 Msa1395360:CDS 30.0%
! ATTAGGCTTAATAGCAGTTT+TGG + tig0021940:3897-3916 None:intergenic 30.0%
TGACTTGATCAAAATTGCAT+AGG - tig0021940:4057-4076 Msa1395360:CDS 30.0%
GACTTGATCAAAATTGCATA+GGG - tig0021940:4058-4077 Msa1395360:CDS 30.0%
ACTTGATCAAAATTGCATAG+GGG - tig0021940:4059-4078 Msa1395360:intron 30.0%
!!! GTACTCTGTCATTTTATGTT+AGG + tig0021940:4194-4213 None:intergenic 30.0%
! AGAGGGTTTTCCATTAAAAT+AGG - tig0021940:4298-4317 Msa1395360:intron 30.0%
!! TTTGAACACGCCTATTTTAA+TGG + tig0021940:4311-4330 None:intergenic 30.0%
AAGACGTGTTCAATACAATT+TGG - tig0021940:4403-4422 Msa1395360:intron 30.0%
TCAACCAAAATCTTGAAACT+AGG - tig0021940:4430-4449 Msa1395360:intron 30.0%
! ATCACCTAGTTTCAAGATTT+TGG + tig0021940:4437-4456 None:intergenic 30.0%
TCATAAAATTGTTTGACGAG+AGG - tig0021940:4527-4546 Msa1395360:intron 30.0%
!!! TAGTTTTTTATCATTTGGGC+CGG + tig0021940:4591-4610 None:intergenic 30.0%
TTTACTTTCAATGTTGGGAT+GGG + tig0021940:4672-4691 None:intergenic 30.0%
TTTAATGGAGCATGGAAAAA+AGG + tig0021940:4781-4800 None:intergenic 30.0%
! ATGTTTTCTTTAATGGAGCA+TGG + tig0021940:4789-4808 None:intergenic 30.0%
AACTTGTAATCAATTCGGTT+TGG + tig0021940:4869-4888 None:intergenic 30.0%
ATGAATTGGAACCATACAAT+GGG - tig0021940:4977-4996 Msa1395360:intron 30.0%
! TTTTTCGCCAAATACCATTA+AGG - tig0021940:5153-5172 Msa1395360:intron 30.0%
TCTTCTTCCTTAATGGTATT+TGG + tig0021940:5163-5182 None:intergenic 30.0%
! CTCTAAAGAAGAAAGATTGA+TGG + tig0021940:5201-5220 None:intergenic 30.0%
ATTAAAAGCTGAAGTTACAG+AGG - tig0021940:5510-5529 Msa1395360:intron 30.0%
GGTGTTTATTTACAACTGTA+AGG - tig0021940:5575-5594 Msa1395360:intron 30.0%
GTCCCATACAAGAATATAAA+CGG - tig0021940:5720-5739 Msa1395360:intron 30.0%
CTCCGTTTATATTCTTGTAT+GGG + tig0021940:5725-5744 None:intergenic 30.0%
TCTCCGTTTATATTCTTGTA+TGG + tig0021940:5726-5745 None:intergenic 30.0%
TTCCTGTTAAATAAAGTTGG+GGG - tig0021940:5904-5923 Msa1395360:CDS 30.0%
TAATCAACTTGGCCTAATAA+GGG + tig0021940:6088-6107 None:intergenic 30.0%
ATAATCAACTTGGCCTAATA+AGG + tig0021940:6089-6108 None:intergenic 30.0%
! GACTTGGTCAATACAAAAAA+AGG + tig0021940:6113-6132 None:intergenic 30.0%
!!! TTACTTCTCTAGTTTTGACT+TGG + tig0021940:6129-6148 None:intergenic 30.0%
ATACAAAAAGGATGGTTCAA+AGG + tig0021940:6227-6246 None:intergenic 30.0%
TCATCTCTATGATTCTTGTT+AGG + tig0021940:6270-6289 None:intergenic 30.0%
! AGTTTAACTTCATGAGGAGT+GGG + tig0021940:2797-2816 None:intergenic 35.0%
! TCTGACATTGATGATCAAGA+AGG - tig0021940:2821-2840 Msa1395360:three_prime_UTR 35.0%
GCATGTCTAAGAACCTTAAT+AGG + tig0021940:2911-2930 None:intergenic 35.0%
TGTCATGTTTATTGAAGCTG+AGG - tig0021940:3024-3043 Msa1395360:three_prime_UTR 35.0%
GAACATCATATAGGAGTTCT+TGG + tig0021940:3105-3124 None:intergenic 35.0%
ATCGCAACTTCTGTAAACAT+AGG + tig0021940:3868-3887 None:intergenic 35.0%
! GTTTACAGAAGTTGCGATTT+TGG - tig0021940:3366-3385 Msa1395360:CDS 35.0%
! ACTTAGTCAAAATTGGCCTA+GGG + tig0021940:3394-3413 None:intergenic 35.0%
ATCGCAACTTCTTGAAACAT+AGG + tig0021940:4148-4167 None:intergenic 35.0%
! GTTTCAAGAAGTTGCGATTT+TGG - tig0021940:3509-3528 Msa1395360:CDS 35.0%
!! AGCATTGACTTGGTCAAAAT+TGG + tig0021940:3772-3791 None:intergenic 35.0%
!! AGCATTGACTTGGTCAAAAT+TGG - tig0021940:3772-3791 Msa1395360:CDS 35.0%
! GTTTACAGAAGTTGCGATTT+TGG + tig0021940:3366-3385 None:intergenic 35.0%
ATCGCAACTTCTGTAAACAT+AGG - tig0021940:3868-3887 Msa1395360:CDS 35.0%
TCGCAACTTCTGTAAACATA+GGG - tig0021940:3869-3888 Msa1395360:CDS 35.0%
CTTGATCAAAATTGCATAGG+GGG - tig0021940:4060-4079 Msa1395360:intron 35.0%
! GTTTCAAGAAGTTGCGATTT+TGG + tig0021940:3509-3528 None:intergenic 35.0%
GCAACTTCTTGAAACATAGA+AGG - tig0021940:4151-4170 Msa1395360:intron 35.0%
! GTTAGGCTTAATAGCAGTTT+TGG + tig0021940:4177-4196 None:intergenic 35.0%
GCGTGTTCAAAGTTATCTAT+AGG - tig0021940:4320-4339 Msa1395360:intron 35.0%
! TGACGAGAGGTTTACAATTT+TGG - tig0021940:4540-4559 Msa1395360:intron 35.0%
ATGGGTTCATGAGCTTAATT+TGG + tig0021940:4654-4673 None:intergenic 35.0%
GTTTACTTTCAATGTTGGGA+TGG + tig0021940:4673-4692 None:intergenic 35.0%
CATTGTATGGTTCCAATTCA+TGG + tig0021940:4978-4997 None:intergenic 35.0%
CATGAATTGGAACCATACAA+TGG - tig0021940:4976-4995 Msa1395360:intron 35.0%
AGCAGTATCTTCTTCCTTAA+TGG + tig0021940:5170-5189 None:intergenic 35.0%
TGAAGTGATAAGATCGAATG+TGG + tig0021940:5278-5297 None:intergenic 35.0%
GAGGTTTAACGCTAACAATT+CGG - tig0021940:5381-5400 Msa1395360:intron 35.0%
! TCTTCGAAGTGAATTTTGGA+TGG - tig0021940:5632-5651 Msa1395360:intron 35.0%
! CTTCGAAGTGAATTTTGGAT+GGG - tig0021940:5633-5652 Msa1395360:intron 35.0%
! TTCGAAGTGAATTTTGGATG+GGG - tig0021940:5634-5653 Msa1395360:intron 35.0%
ATTCTTGTATGGGACGATAT+AGG + tig0021940:5715-5734 None:intergenic 35.0%
AACCTCTTCATATCTTCAGA+GGG + tig0021940:5777-5796 None:intergenic 35.0%
AAACCTCTTCATATCTTCAG+AGG + tig0021940:5778-5797 None:intergenic 35.0%
AAGGTAGACATCACAAAACT+AGG + tig0021940:5855-5874 None:intergenic 35.0%
AACATATGTAAAGCAGCCTA+AGG + tig0021940:6060-6079 None:intergenic 35.0%
TCTATTCAAATCTGTTGGAG+AGG - tig0021940:6171-6190 Msa1395360:CDS 35.0%
CATCGTTAATGTTCACAGTG+CGG - tig0021940:2738-2757 Msa1395360:three_prime_UTR 40.0%
! GAGTTTAACTTCATGAGGAG+TGG + tig0021940:2798-2817 None:intergenic 40.0%
! GAGAGGAGTTTAACTTCATG+AGG + tig0021940:2803-2822 None:intergenic 40.0%
CTTGATCATCAATGTCAGAG+AGG + tig0021940:2820-2839 None:intergenic 40.0%
ATTACTATCCATTTGCGGGA+AGG - tig0021940:2951-2970 Msa1395360:three_prime_UTR 40.0%
!! AAGTTGATGGTGGATTGTAC+CGG - tig0021940:2995-3014 Msa1395360:three_prime_UTR 40.0%
AATAAACATGACACCCTCAC+CGG + tig0021940:3017-3036 None:intergenic 40.0%
ATAGGAGTTCTTGGAAGCAA+GGG + tig0021940:3096-3115 None:intergenic 40.0%
TATAGGAGTTCTTGGAAGCA+AGG + tig0021940:3097-3116 None:intergenic 40.0%
TCCAGCCTCAGAACAAATTA+TGG - tig0021940:3123-3142 Msa1395360:three_prime_UTR 40.0%
!! TCCATAATTTGTTCTGAGGC+TGG + tig0021940:3127-3146 None:intergenic 40.0%
!! ACGGTCCATAATTTGTTCTG+AGG + tig0021940:3131-3150 None:intergenic 40.0%
GCAACTTCTGTAAACATAGG+CGG + tig0021940:3871-3890 None:intergenic 40.0%
! TTAGTCAAAATTGGCCTAGG+GGG + tig0021940:3392-3411 None:intergenic 40.0%
! CTTAGTCAAAATTGGCCTAG+GGG + tig0021940:3393-3412 None:intergenic 40.0%
! GACTTAGTCAAAATTGGCCT+AGG + tig0021940:3395-3414 None:intergenic 40.0%
GCAACTTCTTGAAACATAGG+AGG + tig0021940:3504-3523 None:intergenic 40.0%
! TTGGTCAAAATTGGCCTAAG+GGG + tig0021940:3595-3614 None:intergenic 40.0%
! CTTGGTCAAAATTGGCCTAA+GGG + tig0021940:3596-3615 None:intergenic 40.0%
! ACTTGGTCAAAATTGGCCTA+AGG + tig0021940:3779-3798 None:intergenic 40.0%
! ACTTGGTCAAAATTGGCCTA+GGG - tig0021940:3779-3798 Msa1395360:CDS 40.0%
CGCAACTTCTGTAAACATAG+GGG - tig0021940:3870-3889 Msa1395360:CDS 40.0%
GCAACTTCTGTAAACATAGG+GGG - tig0021940:3871-3890 Msa1395360:CDS 40.0%
!! ACTCAAGTGTTGAGTTTGTG+TGG + tig0021940:4506-4525 None:intergenic 40.0%
AGAGCTTCATCGTATCTTAG+TGG - tig0021940:4695-4714 Msa1395360:intron 40.0%
GAGCTTCATCGTATCTTAGT+GGG - tig0021940:4696-4715 Msa1395360:intron 40.0%
! GCTTTTTAAATGGGTCAACC+TGG + tig0021940:4748-4767 None:intergenic 40.0%
TGAGACAATTCATGACTGCA+TGG - tig0021940:5014-5033 Msa1395360:intron 40.0%
GAGACAATTCATGACTGCAT+GGG - tig0021940:5015-5034 Msa1395360:intron 40.0%
CATTCAACCTGTGTGGAATA+GGG - tig0021940:5069-5088 Msa1395360:intron 40.0%
GTGGAATAGGGAGATTCTAA+TGG - tig0021940:5081-5100 Msa1395360:intron 40.0%
AAATGGTTGCATGTAATGCG+TGG + tig0021940:5118-5137 None:intergenic 40.0%
! TCGGCACTTGTTGGATATTA+CGG - tig0021940:5400-5419 Msa1395360:intron 40.0%
! TAACTGTTTTGCTTACCCAG+CGG - tig0021940:5423-5442 Msa1395360:intron 40.0%
! AAGCTTTGTGGAAACCCATT+TGG - tig0021940:5463-5482 Msa1395360:intron 40.0%
AAACCCATTTGGTTATGCAG+TGG - tig0021940:5474-5493 Msa1395360:intron 40.0%
ACTCCACTGCATAACCAAAT+GGG + tig0021940:5480-5499 None:intergenic 40.0%
AACTCCACTGCATAACCAAA+TGG + tig0021940:5481-5500 None:intergenic 40.0%
AGAGGAATACATGCATTCTG+TGG - tig0021940:5528-5547 Msa1395360:intron 40.0%
GGCCGATCTTATGGTTATTA+AGG - tig0021940:5549-5568 Msa1395360:intron 40.0%
! TTTCAGATTTGACTCGTGCT+AGG - tig0021940:5608-5627 Msa1395360:intron 40.0%
! AGGCTCTTCGAAGTGAATTT+TGG - tig0021940:5628-5647 Msa1395360:intron 40.0%
TCTTCAGAGGGCAAACAAAT+TGG + tig0021940:5765-5784 None:intergenic 40.0%
GAAGAGGTTTGCAAAAGAGT+TGG - tig0021940:5788-5807 Msa1395360:intron 40.0%
AAAGAGTTGGATGAGATGCT+TGG - tig0021940:5801-5820 Msa1395360:intron 40.0%
!!! CACTCGGTGTAAGATGATTT+TGG + tig0021940:5830-5849 None:intergenic 40.0%
!! ATCACAAAACTAGGAGCACT+CGG + tig0021940:5846-5865 None:intergenic 40.0%
! AGCCCCCAACTTTATTTAAC+AGG + tig0021940:5909-5928 None:intergenic 40.0%
!!! CGGCTGTTTTATTTAGCCTT+AGG - tig0021940:6041-6060 Msa1395360:CDS 40.0%
CTATCGTCACGAACCATCAA+TGG - tig0021940:2874-2893 Msa1395360:three_prime_UTR 45.0%
GGCAGAGAAAGACCCTATTA+AGG - tig0021940:2895-2914 Msa1395360:three_prime_UTR 45.0%
ATCCATTTGCGGGAAGGATT+AGG - tig0021940:2957-2976 Msa1395360:three_prime_UTR 45.0%
TCCATTTGCGGGAAGGATTA+GGG - tig0021940:2958-2977 Msa1395360:three_prime_UTR 45.0%
AGTTCTTGGAAGCAAGGGAA+TGG + tig0021940:3091-3110 None:intergenic 45.0%
CTGAGGCTGGAACATCATAT+AGG + tig0021940:3114-3133 None:intergenic 45.0%
TGGACCTGTATGAGTCGAAT+GGG + tig0021940:3154-3173 None:intergenic 45.0%
TTGGACCTGTATGAGTCGAA+TGG + tig0021940:3155-3174 None:intergenic 45.0%
TGACTAAGTCAATGCTGACG+TGG - tig0021940:3405-3424 Msa1395360:CDS 45.0%
CAAAGGGGGCAAAACATAGA+GGG + tig0021940:3563-3582 None:intergenic 45.0%
! TTTTGCCCCCTTTGCACTTT+TGG - tig0021940:3569-3588 Msa1395360:CDS 45.0%
! TAAGGGGCCAAAAGTGCAAA+GGG + tig0021940:3579-3598 None:intergenic 45.0%
! GACTTGGTCAAAATTGGCCT+AGG - tig0021940:3778-3797 Msa1395360:CDS 45.0%
! CTTGGTCAAAATTGGCCTAG+GGG - tig0021940:3780-3799 Msa1395360:CDS 45.0%
! TTTTGCCCCCTTTGCACTTT+TGG + tig0021940:3569-3588 None:intergenic 45.0%
TGCAAAGGGGGCAAAACATA+GGG - tig0021940:3810-3829 Msa1395360:CDS 45.0%
TGATCAAGTCAATGCTGACG+TGG + tig0021940:4048-4067 None:intergenic 45.0%
! TTTTGCCCCCTTTGCACTTT+TGG + tig0021940:3569-3588 None:intergenic 45.0%
TGCAAAGGGGGCAAAACATA+GGG - tig0021940:3810-3829 Msa1395360:CDS 45.0%
TGTGTGGAGTCAGACAAATG+AGG + tig0021940:4490-4509 None:intergenic 45.0%
GGGCCGGATGTTACATAATT+TGG + tig0021940:4575-4594 None:intergenic 45.0%
GGTTCATAGTGGCCATGAAT+TGG - tig0021940:4963-4982 Msa1395360:intron 45.0%
! TTCCACACAGGTTGAATGGA+AGG + tig0021940:5067-5086 None:intergenic 45.0%
! CCTATTCCACACAGGTTGAA+TGG + tig0021940:5071-5090 None:intergenic 45.0%
CCATTCAACCTGTGTGGAAT+AGG - tig0021940:5068-5087 Msa1395360:intron 45.0%
AGAATCTCCCTATTCCACAC+AGG + tig0021940:5079-5098 None:intergenic 45.0%
! GTGCATTGACGAAGGTGAAA+TGG + tig0021940:5256-5275 None:intergenic 45.0%
!! CTCAAAAGCACTGCAGTTAG+AGG - tig0021940:5315-5334 Msa1395360:intron 45.0%
GCAGTTAGAGGCAAATGAAG+AGG - tig0021940:5327-5346 Msa1395360:intron 45.0%
GCTAACAATTCGGCACTTGT+TGG - tig0021940:5391-5410 Msa1395360:intron 45.0%
! GTGAATTTTGGATGGGGTGA+AGG - tig0021940:5640-5659 Msa1395360:intron 45.0%
! GTGTATGGTGGAGTTGCAAA+AGG - tig0021940:5664-5683 Msa1395360:intron 45.0%
! TATGGTGGAGTTGCAAAAGG+TGG - tig0021940:5667-5686 Msa1395360:intron 45.0%
! ATGGTGGAGTTGCAAAAGGT+GGG - tig0021940:5668-5687 Msa1395360:intron 45.0%
! TGCCCTCTGAAGATATGAAG+AGG - tig0021940:5772-5791 Msa1395360:intron 45.0%
AATCTGTTGGAGAGGAGAGA+AGG - tig0021940:6179-6198 Msa1395360:CDS 45.0%
ATCTGTTGGAGAGGAGAGAA+GGG - tig0021940:6180-6199 Msa1395360:CDS 45.0%
!! TATATATATATATATATTAG+AGG - tig0021940:4280-4299 Msa1395360:intron 5.0%
!! ATATATATATATATATTAGA+GGG - tig0021940:4281-4300 Msa1395360:intron 5.0%
CGTTAATGTTCACAGTGCGG+AGG - tig0021940:2741-2760 Msa1395360:three_prime_UTR 50.0%
AACTTCATGAGGAGTGGGTG+CGG + tig0021940:2792-2811 None:intergenic 50.0%
GGGTCTTTCTCTGCCATTGA+TGG + tig0021940:2890-2909 None:intergenic 50.0%
TCCCTAATCCTTCCCGCAAA+TGG + tig0021940:2962-2981 None:intergenic 50.0%
ATTTGCGGGAAGGATTAGGG+AGG - tig0021940:2961-2980 Msa1395360:three_prime_UTR 50.0%
TTTGCGGGAAGGATTAGGGA+GGG - tig0021940:2962-2981 Msa1395360:three_prime_UTR 50.0%
!! ATGGTGGATTGTACCGGTGA+GGG - tig0021940:3001-3020 Msa1395360:three_prime_UTR 50.0%
TCTTGGAAGCAAGGGAATGG+AGG + tig0021940:3088-3107 None:intergenic 50.0%
CCTGTATGAGTCGAATGGGA+CGG + tig0021940:3150-3169 None:intergenic 50.0%
GCAAAGGGGGCAAAACATAG+AGG + tig0021940:3811-3830 None:intergenic 50.0%
! AAGGGGCCAAAAGTGCAAAG+GGG + tig0021940:3578-3597 None:intergenic 50.0%
! CTAAGGGGCCAAAAGTGCAA+AGG + tig0021940:3580-3599 None:intergenic 50.0%
! CTTTGCACTTTTGGCCCCTT+AGG - tig0021940:3578-3597 Msa1395360:CDS 50.0%
TGACCAAGTCAATGCTGACG+TGG - tig0021940:3608-3627 Msa1395360:CDS 50.0%
TGACCAAGTCAATGCTGACG+TGG + tig0021940:3608-3627 None:intergenic 50.0%
! CTAGGGGCCAAAAGTGCAAA+GGG - tig0021940:3796-3815 Msa1395360:CDS 50.0%
! TAGGGGCCAAAAGTGCAAAG+GGG - tig0021940:3797-3816 Msa1395360:CDS 50.0%
GTGCAAAGGGGGCAAAACAT+AGG - tig0021940:3809-3828 Msa1395360:CDS 50.0%
GCAAAGGGGGCAAAACATAG+GGG - tig0021940:3811-3830 Msa1395360:CDS 50.0%
CAAAGGGGGCAAAACATAGG+GGG - tig0021940:3812-3831 Msa1395360:CDS 50.0%
! ATAGGGGGCCAAAAGTGCAA+AGG - tig0021940:4075-4094 Msa1395360:intron 50.0%
! TAGGGGGCCAAAAGTGCAAA+GGG - tig0021940:4076-4095 Msa1395360:intron 50.0%
GTGCAAAGGGGGCAAAACAT+AGG - tig0021940:3809-3828 Msa1395360:CDS 50.0%
GCAAAGGGGGCAAAACATAG+GGG - tig0021940:3811-3830 Msa1395360:CDS 50.0%
CAAAGGGGGCAAAACATAGG+GGG - tig0021940:3812-3831 Msa1395360:CDS 50.0%
GCATCCAACTCAAAGTCGAG+AGG - tig0021940:4626-4645 Msa1395360:intron 50.0%
TCACACGTCTCAAGTGTGGT+GGG - tig0021940:4942-4961 Msa1395360:intron 50.0%
!! CAAGTGTGGTGGGTTCATAG+TGG - tig0021940:4952-4971 Msa1395360:intron 50.0%
CAGCTGCATCACCCATTGTA+TGG + tig0021940:4991-5010 None:intergenic 50.0%
CATACAATGGGTGATGCAGC+TGG - tig0021940:4989-5008 Msa1395360:intron 50.0%
CATGACTGCATGGGCAGAAA+TGG - tig0021940:5024-5043 Msa1395360:intron 50.0%
GTCCTTCCATTCAACCTGTG+TGG - tig0021940:5062-5081 Msa1395360:intron 50.0%
GGTTGCATGTAATGCGTGGA+GGG + tig0021940:5114-5133 None:intergenic 50.0%
TGGTTGCATGTAATGCGTGG+AGG + tig0021940:5115-5134 None:intergenic 50.0%
! CGAATGTGGTGCATTGACGA+AGG + tig0021940:5264-5283 None:intergenic 50.0%
GTTAAACCTCGAGCGTGCAT+TGG + tig0021940:5371-5390 None:intergenic 50.0%
GCATTCTGTGGCCGATCTTA+TGG - tig0021940:5540-5559 Msa1395360:intron 50.0%
GGGACGATATAGGTTACTCC+AGG + tig0021940:5705-5724 None:intergenic 50.0%
GAGAGGAGAGAAGGGAATGA+GGG - tig0021940:6188-6207 Msa1395360:CDS 50.0%
!! CTGGAAGCACCAACTCTGGT+TGG + tig0021940:2769-2788 None:intergenic 55.0%
GAAGGATTAGGGAGGGAGCT+AGG - tig0021940:2969-2988 Msa1395360:three_prime_UTR 55.0%
!! AGCTAGGCGCAAGTTGATGG+TGG - tig0021940:2985-3004 Msa1395360:three_prime_UTR 55.0%
!! GATGGTGGATTGTACCGGTG+AGG - tig0021940:3000-3019 Msa1395360:three_prime_UTR 55.0%
CCGTCCCATTCGACTCATAC+AGG - tig0021940:3147-3166 Msa1395360:three_prime_UTR 55.0%
!! AGTTGCGATTTTGGCCCCCT+AGG - tig0021940:3375-3394 Msa1395360:CDS 55.0%
! AGGGGCCAAAAGTGCAAAGG+GGG + tig0021940:3798-3817 None:intergenic 55.0%
!! ACGCCACGTCAGCATTGACT+TGG + tig0021940:4042-4061 None:intergenic 55.0%
! CCTTTGCACTTTTGGCCCCT+AGG + tig0021940:3577-3596 None:intergenic 55.0%
! CCTAGGGGCCAAAAGTGCAA+AGG - tig0021940:3795-3814 Msa1395360:CDS 55.0%
! AGGGGCCAAAAGTGCAAAGG+GGG - tig0021940:3798-3817 Msa1395360:CDS 55.0%
! AGGGGGCCAAAAGTGCAAAG+GGG - tig0021940:4077-4096 Msa1395360:intron 55.0%
GGAGCCTCTCGACTTTGAGT+TGG + tig0021940:4633-4652 None:intergenic 55.0%
CAGGTCACACGTCTCAAGTG+TGG - tig0021940:4938-4957 Msa1395360:intron 55.0%
GTCACACGTCTCAAGTGTGG+TGG - tig0021940:4941-4960 Msa1395360:intron 55.0%
CATAGCCACGCTTCGTCTCT+TGG - tig0021940:5228-5247 Msa1395360:intron 55.0%
TGGAACCAAGAGACGAAGCG+TGG + tig0021940:5236-5255 None:intergenic 55.0%
AAGCTTCCCTGCAGTGGTGA+CGG + tig0021940:5449-5468 None:intergenic 55.0%
ACCACTGCAGGGAAGCTTTG+TGG - tig0021940:5451-5470 Msa1395360:intron 55.0%
TCCACAAAGCTTCCCTGCAG+TGG + tig0021940:5455-5474 None:intergenic 55.0%
TGGAGTTGCAAAAGGTGGGC+TGG - tig0021940:5672-5691 Msa1395360:intron 55.0%
!!! AGGTGGGCTGGAACTTTTCC+TGG - tig0021940:5684-5703 Msa1395360:intron 55.0%
GGAGAGGAGAGAAGGGAATG+AGG - tig0021940:6187-6206 Msa1395360:CDS 55.0%
! GGGAGCTAGGCGCAAGTTGA+TGG - tig0021940:2982-3001 Msa1395360:three_prime_UTR 60.0%
!! GCGCCACGTCAGCATTGACT+TGG - tig0021940:3762-3781 Msa1395360:CDS 60.0%
! GGGGGCCAAAAGTGCAAAGG+GGG - tig0021940:4078-4097 Msa1395360:intron 60.0%
GCATGGGCAGAAATGGCTCG+AGG - tig0021940:5031-5050 Msa1395360:intron 60.0%
! GGATGGGGTGAAGGCGTGTA+TGG - tig0021940:5649-5668 Msa1395360:intron 60.0%
! TGGGGTGAAGGCGTGTATGG+TGG - tig0021940:5652-5671 Msa1395360:intron 60.0%
!! GCGGAGGTGCCAACCAGAGT+TGG - tig0021940:2757-2776 Msa1395360:three_prime_UTR 65.0%
!! GCGGCTGGAAGCACCAACTC+TGG + tig0021940:2773-2792 None:intergenic 65.0%
TCATGAGGAGTGGGTGCGGC+TGG + tig0021940:2788-2807 None:intergenic 65.0%
GTCAATGCTGACGTGGCGCC+AGG + tig0021940:3761-3780 None:intergenic 65.0%
GCATCGCCAATGCACGCTCG+AGG - tig0021940:5362-5381 Msa1395360:intron 65.0%
!! CTGCAGTGGTGACGGCCGCT+GGG + tig0021940:5441-5460 None:intergenic 70.0%
CAGCGGCCGTCACCACTGCA+GGG - tig0021940:5440-5459 Msa1395360:intron 70.0%
!! CCTGCAGTGGTGACGGCCGC+TGG + tig0021940:5442-5461 None:intergenic 75.0%
CCAGCGGCCGTCACCACTGC+AGG - tig0021940:5439-5458 Msa1395360:intron 75.0%
Chromosome Type Strat End Strand Name
tig0021940 gene 2728 6290 2728 ID=Msa1395360;Name=Msa1395360
tig0021940 mRNA 2728 6290 2728 ID=Msa1395360-mRNA-1;Parent=Msa1395360;Name=Msa1395360-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0.5|1|1|1|2|579|387
tig0021940 exon 2728 4077 2728 ID=Msa1395360-mRNA-1:exon:14903;Parent=Msa1395360-mRNA-1
tig0021940 exon 5898 6290 5898 ID=Msa1395360-mRNA-1:exon:14902;Parent=Msa1395360-mRNA-1
tig0021940 CDS 5898 6290 5898 ID=Msa1395360-mRNA-1:cds;Parent=Msa1395360-mRNA-1
tig0021940 CDS 3307 4077 3307 ID=Msa1395360-mRNA-1:cds;Parent=Msa1395360-mRNA-1
tig0021940 three_prime_UTR 2728 3306 2728 ID=Msa1395360-mRNA-1:three_prime_utr;Parent=Msa1395360-mRNA-1
Gene Sequence

>Msa1395360

ATGACTTCATCATCGTTAATGTTCACAGTGCGGAGGTGCCAACCAGAGTTGGTGCTTCCAGCCGCACCCACTCCTCATGAAGTTAAACTCCTCTCTGACATTGATGATCAAGAAGGTTTGCGTTTCAATATTCCTGTCATATTTATCTATCGTCACGAACCATCAATGGCAGAGAAAGACCCTATTAAGGTTCTTAGACATGCACTCTCACAAGCACTTGTTTATTACTATCCATTTGCGGGAAGGATTAGGGAGGGAGCTAGGCGCAAGTTGATGGTGGATTGTACCGGTGAGGGTGTCATGTTTATTGAAGCTGAGGCTGATGTAACACTTGATCAATTTGGTGATGCTCTGCATCCTCCATTCCCTTGCTTCCAAGAACTCCTATATGATGTCACACGTCTCAAGTGTGGTGGGTTCATAGTGGCCATGAATTGGAACCATACAATGGGTGATGCAGCTGGTTTGAGACAATTCATGACTGCATGGGCAGAAATGGCTCGAGGAGCACATCGTCCTTCCATTCAACCTGTGTGGAATAGGGAGATTCTAATGGCAAGAGACCCTCCACGCATTACATGCAACCATTTTGAATACGAACAAATTTTTTCGCCAAATACCATTAAGGAAGAAGATACTGCTTCTCTAGTCCATCAATCTTTCTTCTTTAGAGCTTCTGACATAGCCACGCTTCGTCTCTTGGTTCCATTTCACCTTCGTCAATGCACCACATTCGATCTTATCACTTCATGTTTTTGGCGTTGTCGCTCAAAAGCACTGCAGTTAGAGGCAAATGAAGAGGTACGAATGATGTGCATCGCCAATGCACGCTCGAGGTTTAACGCTAACAATTCGGCACTTGTTGGATATTACGGTAACTGTTTTGCTTACCCAGCGGCCGTCACCACTGCAGGGAAGCTTTGTGGAAACCCATTTGGTTATGCAGTGGAGTTGATAAGAAAATTAAAAGCTGAAGTTACAGAGGAATACATGCATTCTGTGGCCGATCTTATGGTTATTAAGGAACGGTGTTTATTTACAACTGTAAGGTCTTGTATTATTTCAGATTTGACTCGTGCTAGGCTCTTCGAAGTGAATTTTGGATGGGGTGAAGGCGTGTATGGTGGAGTTGCAAAAGGTGGGCTGGAACTTTTCCTGGAGTAA

Protein sequence

>Msa1395360

MTSSSLMFTVRRCQPELVLPAAPTPHEVKLLSDIDDQEGLRFNIPVIFIYRHEPSMAEKDPIKVLRHALSQALVYYYPFAGRIREGARRKLMVDCTGEGVMFIEAEADVTLDQFGDALHPPFPCFQELLYDVTRLKCGGFIVAMNWNHTMGDAAGLRQFMTAWAEMARGAHRPSIQPVWNREILMARDPPRITCNHFEYEQIFSPNTIKEEDTASLVHQSFFFRASDIATLRLLVPFHLRQCTTFDLITSCFWRCRSKALQLEANEEVRMMCIANARSRFNANNSALVGYYGNCFAYPAAVTTAGKLCGNPFGYAVELIRKLKAEVTEEYMHSVADLMVIKERCLFTTVRSCIISDLTRARLFEVNFGWGEGVYGGVAKGGLELFLE*