AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0876550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0876550 MtrunA17_Chr6g0457761 95.024 422 21 0 1 422 1 422 0.0 728
Msa0876550 MtrunA17_Chr7g0250831 48.624 436 161 20 1 398 1 411 1.06e-83 275
Msa0876550 MtrunA17_Chr1g0172971 44.917 423 156 19 35 422 112 492 3.64e-63 213
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0876550 AT1G67040.2 41.159 328 141 16 1 312 1 292 3.01e-53 191
Msa0876550 AT1G67040.1 41.159 328 141 16 1 312 1 292 3.25e-53 191

Find 63 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGAAAATGAAGATTTAT+TGG 0.150712 6_1:-14807682 None:intergenic
TTCTGTCACAATGCCGTTAT+TGG 0.209571 6_1:-14808063 None:intergenic
GATTCTTTGAAGAAGTTTAA+AGG 0.209979 6_1:+14807137 Msa0876550:CDS
CTTTGATTGTAGATTGCTAA+TGG 0.275356 6_1:+14807519 Msa0876550:intron
TGATGATGGTGAGGAGTCTT+TGG 0.307931 6_1:+14807707 Msa0876550:CDS
AATCAATCATGTTATAATTC+TGG 0.310463 6_1:+14808116 Msa0876550:CDS
ACCAAATGGAGTTGGGAATT+AGG 0.310684 6_1:-14807173 None:intergenic
TGCAAGCACATATATTCTTC+TGG 0.326935 6_1:-14808381 None:intergenic
GGAAGATGCAAGAAAACATT+TGG 0.365373 6_1:-14808024 None:intergenic
GCCTAATTCCCAACTCCATT+TGG 0.368909 6_1:+14807172 Msa0876550:CDS
GAAGAGTCCGAGAATTTCTT+CGG 0.392103 6_1:+14807920 Msa0876550:CDS
CGCTGATGCTGAAGAGAAAT+CGG 0.398447 6_1:-14808231 None:intergenic
TTTGATTGTAGATTGCTAAT+GGG 0.399660 6_1:+14807520 Msa0876550:intron
AAGCTAGGTGGTGGTTGTAT+TGG 0.402353 6_1:+14806564 Msa0876550:CDS
GATTTATCTCTCTTTGAAGA+TGG 0.402536 6_1:-14807660 None:intergenic
CTCTTTCCCGAAGAAATTCT+CGG 0.418867 6_1:-14807927 None:intergenic
CACATATATTCTTCTGGAAG+TGG 0.436122 6_1:-14808375 None:intergenic
GCCTCAGAAGCTTCGGAAAA+CGG 0.442167 6_1:+14807764 Msa0876550:CDS
AAGTCTTGTAGCTAGGTTGA+TGG 0.445700 6_1:+14807623 Msa0876550:CDS
CAAACCGCATGGAGGCTTAG+AGG 0.445930 6_1:+14808421 Msa0876550:CDS
GCGAAAACATCTGAAACAAT+AGG 0.446400 6_1:-14808209 None:intergenic
AAGAGTCCGAGAATTTCTTC+GGG 0.450925 6_1:+14807921 Msa0876550:CDS
AGAAGAGCAGTGACTAGGTT+TGG 0.456776 6_1:+14807798 Msa0876550:CDS
CTGTTTGTAGCCTGCAAACC+AGG 0.470209 6_1:-14807999 None:intergenic
TGTTCTTACCAAATGGAGTT+GGG 0.472016 6_1:-14807180 None:intergenic
TTCTGGCATAGACAAGTCAT+TGG 0.478796 6_1:+14808133 Msa0876550:CDS
AGTCAAGGCCTCAGAAGCTT+CGG 0.491390 6_1:+14807757 Msa0876550:CDS
CATAAAACTCGAACACAAGA+AGG 0.496476 6_1:+14808473 Msa0876550:CDS
TAACGGCATTGTGACAGAAA+TGG 0.498435 6_1:+14808067 Msa0876550:CDS
TCAAAGTGTCCTACCAATAA+CGG 0.502704 6_1:+14808050 Msa0876550:CDS
GAAATTCTCGGACTCTTCAA+AGG 0.504286 6_1:-14807915 None:intergenic
ATGTTCTTACCAAATGGAGT+TGG 0.504634 6_1:-14807181 None:intergenic
ATTGGTAGGACACTTTGAAA+TGG 0.506348 6_1:-14808045 None:intergenic
CATGAGTTATGATCTTCTCC+TGG 0.522859 6_1:-14808310 None:intergenic
AAGAAGAATAATCAAAAGCT+AGG 0.529032 6_1:+14806549 Msa0876550:CDS
TCTGGCATAGACAAGTCATT+GGG 0.533419 6_1:+14808134 Msa0876550:CDS
AGTGATGATGCTAGTGTGAA+TGG 0.540323 6_1:+14806501 Msa0876550:CDS
ACGAGAGAAGAGCAGTGACT+AGG 0.561080 6_1:+14807793 Msa0876550:CDS
CATGGAGGCTTAGAGGATGA+TGG 0.562488 6_1:+14808428 Msa0876550:CDS
TGTAGTTCTTCTCAGAAGCC+AGG 0.569110 6_1:+14808292 Msa0876550:CDS
AAACAAGTTTATTAGCGTGA+TGG 0.570139 6_1:-14807890 None:intergenic
AGTCTTGTAGCTAGGTTGAT+GGG 0.572119 6_1:+14807624 Msa0876550:CDS
ATCAACCTAGCTACAAGACT+TGG 0.573014 6_1:-14807621 None:intergenic
TGACAGAAATGGCTGGAACT+CGG 0.575576 6_1:+14808078 Msa0876550:CDS
AATAATCAAAAGCTAGGTGG+TGG 0.577202 6_1:+14806555 Msa0876550:CDS
GGCATTGTGACAGAAATGGC+TGG 0.587128 6_1:+14808071 Msa0876550:CDS
AAGCACCAAGTCTTGTAGCT+AGG 0.588985 6_1:+14807616 Msa0876550:CDS
AGAAGAGACTAACCAGGAGG+AGG 0.589050 6_1:-14806657 None:intergenic
CGAATGCAAGGCATGAGTCA+AGG 0.602268 6_1:+14807742 Msa0876550:CDS
AGATCAAAGCTACGAATGCA+AGG 0.611185 6_1:+14807730 Msa0876550:CDS
ATTGCTAATGGGAACAGTGG+AGG 0.612632 6_1:+14807531 Msa0876550:CDS
GATTGATTCTGTATATCTTG+TGG 0.620065 6_1:-14808101 None:intergenic
GTCACAATGCCGTTATTGGT+AGG 0.622935 6_1:-14808059 None:intergenic
ATAAAACTCGAACACAAGAA+GGG 0.626617 6_1:+14808474 Msa0876550:CDS
TTCTGATAGTGATGATGGTG+AGG 0.629680 6_1:+14807698 Msa0876550:CDS
TAGATTGCTAATGGGAACAG+TGG 0.630457 6_1:+14807528 Msa0876550:intron
AGAGTACATCTCGAAGCTCA+AGG 0.642881 6_1:+14807946 Msa0876550:CDS
AAGAATAATCAAAAGCTAGG+TGG 0.660457 6_1:+14806552 Msa0876550:CDS
CTGGCATAGACAAGTCATTG+GGG 0.665747 6_1:+14808135 Msa0876550:CDS
TCATCGCGCAAACCGCATGG+AGG 0.697799 6_1:+14808413 Msa0876550:CDS
TCAGAAGCTTCGGAAAACGG+AGG 0.698643 6_1:+14807767 Msa0876550:CDS
TGGCATAGACAAGTCATTGG+GGG 0.718479 6_1:+14808136 Msa0876550:CDS
TCATCCTCTAAGCCTCCATG+CGG 0.772619 6_1:-14808425 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAGAAAACAAAAGAAA+TGG - chr6_1:14806956-14806975 None:intergenic 15.0%
!! ATTTAAGAAAACAAAAGAAA+TGG - chr6_1:14806956-14806975 None:intergenic 15.0%
!! ATCAGAAAATGAAGATTTAT+TGG - chr6_1:14807685-14807704 None:intergenic 20.0%
!! AATCAATCATGTTATAATTC+TGG + chr6_1:14808116-14808135 Msa0876550:CDS 20.0%
!! ATCAGAAAATGAAGATTTAT+TGG - chr6_1:14807685-14807704 None:intergenic 20.0%
!! AATCAATCATGTTATAATTC+TGG + chr6_1:14808116-14808135 Msa0876550:CDS 20.0%
! AAGAAGAATAATCAAAAGCT+AGG + chr6_1:14806549-14806568 Msa0876550:CDS 25.0%
! TATATATCACTTATGAAGCT+CGG + chr6_1:14806726-14806745 Msa0876550:intron 25.0%
! AAATGTGAAAATTTGACATG+AGG + chr6_1:14807038-14807057 Msa0876550:intron 25.0%
! AATGTGAAAATTTGACATGA+GGG + chr6_1:14807039-14807058 Msa0876550:intron 25.0%
!! GATTCTTTGAAGAAGTTTAA+AGG + chr6_1:14807137-14807156 Msa0876550:CDS 25.0%
! TATCATATGTTCTTACCAAA+TGG - chr6_1:14807190-14807209 None:intergenic 25.0%
! ACAAAATCTATGTATTCACA+CGG + chr6_1:14807281-14807300 Msa0876550:intron 25.0%
!!! CGGTATTTTAGAGTTTAAAA+AGG - chr6_1:14807366-14807385 None:intergenic 25.0%
! TTTGATTGTAGATTGCTAAT+GGG + chr6_1:14807520-14807539 Msa0876550:intron 25.0%
!! TTTTCAAATGCGAAAAAAAG+TGG + chr6_1:14807555-14807574 Msa0876550:CDS 25.0%
! TTTCAAATGCGAAAAAAAGT+GGG + chr6_1:14807556-14807575 Msa0876550:CDS 25.0%
! AAGAAGAATAATCAAAAGCT+AGG + chr6_1:14806549-14806568 Msa0876550:CDS 25.0%
! TATATATCACTTATGAAGCT+CGG + chr6_1:14806726-14806745 Msa0876550:intron 25.0%
! AAATGTGAAAATTTGACATG+AGG + chr6_1:14807038-14807057 Msa0876550:intron 25.0%
! AATGTGAAAATTTGACATGA+GGG + chr6_1:14807039-14807058 Msa0876550:intron 25.0%
!! GATTCTTTGAAGAAGTTTAA+AGG + chr6_1:14807137-14807156 Msa0876550:CDS 25.0%
! TATCATATGTTCTTACCAAA+TGG - chr6_1:14807190-14807209 None:intergenic 25.0%
! ACAAAATCTATGTATTCACA+CGG + chr6_1:14807281-14807300 Msa0876550:intron 25.0%
!!! CGGTATTTTAGAGTTTAAAA+AGG - chr6_1:14807366-14807385 None:intergenic 25.0%
! TTTGATTGTAGATTGCTAAT+GGG + chr6_1:14807520-14807539 Msa0876550:intron 25.0%
!! TTTTCAAATGCGAAAAAAAG+TGG + chr6_1:14807555-14807574 Msa0876550:CDS 25.0%
! TTTCAAATGCGAAAAAAAGT+GGG + chr6_1:14807556-14807575 Msa0876550:CDS 25.0%
AAGAATAATCAAAAGCTAGG+TGG + chr6_1:14806552-14806571 Msa0876550:CDS 30.0%
! TTTTCTCTCAGCTATTTGAT+TGG + chr6_1:14806589-14806608 Msa0876550:CDS 30.0%
GTAATTATATGTGTCAGTGT+CGG + chr6_1:14806816-14806835 Msa0876550:intron 30.0%
! GAACATATGATAATTTGTGC+TGG + chr6_1:14807198-14807217 Msa0876550:intron 30.0%
AACGGTCTAAATTTCAAACT+CGG - chr6_1:14807386-14807405 None:intergenic 30.0%
ATAAGCAACTACTCAAAAGA+AGG - chr6_1:14807473-14807492 None:intergenic 30.0%
!! TTCTTTTGAGTAGTTGCTTA+TGG + chr6_1:14807472-14807491 Msa0876550:intron 30.0%
CTTTGATTGTAGATTGCTAA+TGG + chr6_1:14807519-14807538 Msa0876550:intron 30.0%
! GATTTATCTCTCTTTGAAGA+TGG - chr6_1:14807663-14807682 None:intergenic 30.0%
!! TCATTTTCTGATAGTGATGA+TGG + chr6_1:14807693-14807712 Msa0876550:CDS 30.0%
AAACAAGTTTATTAGCGTGA+TGG - chr6_1:14807893-14807912 None:intergenic 30.0%
! GATTGATTCTGTATATCTTG+TGG - chr6_1:14808104-14808123 None:intergenic 30.0%
! ACTACATCATTTTCATGAGA+CGG - chr6_1:14808278-14808297 None:intergenic 30.0%
!! TGTTCGAGTTTTATGTTTGA+AGG - chr6_1:14808468-14808487 None:intergenic 30.0%
ATAAAACTCGAACACAAGAA+GGG + chr6_1:14808474-14808493 Msa0876550:CDS 30.0%
AAGAATAATCAAAAGCTAGG+TGG + chr6_1:14806552-14806571 Msa0876550:CDS 30.0%
! TTTTCTCTCAGCTATTTGAT+TGG + chr6_1:14806589-14806608 Msa0876550:CDS 30.0%
GTAATTATATGTGTCAGTGT+CGG + chr6_1:14806816-14806835 Msa0876550:intron 30.0%
! GAACATATGATAATTTGTGC+TGG + chr6_1:14807198-14807217 Msa0876550:intron 30.0%
AACGGTCTAAATTTCAAACT+CGG - chr6_1:14807386-14807405 None:intergenic 30.0%
ATAAGCAACTACTCAAAAGA+AGG - chr6_1:14807473-14807492 None:intergenic 30.0%
!! TTCTTTTGAGTAGTTGCTTA+TGG + chr6_1:14807472-14807491 Msa0876550:intron 30.0%
CTTTGATTGTAGATTGCTAA+TGG + chr6_1:14807519-14807538 Msa0876550:intron 30.0%
! GATTTATCTCTCTTTGAAGA+TGG - chr6_1:14807663-14807682 None:intergenic 30.0%
!! TCATTTTCTGATAGTGATGA+TGG + chr6_1:14807693-14807712 Msa0876550:CDS 30.0%
AAACAAGTTTATTAGCGTGA+TGG - chr6_1:14807893-14807912 None:intergenic 30.0%
! GATTGATTCTGTATATCTTG+TGG - chr6_1:14808104-14808123 None:intergenic 30.0%
! ACTACATCATTTTCATGAGA+CGG - chr6_1:14808278-14808297 None:intergenic 30.0%
!! TGTTCGAGTTTTATGTTTGA+AGG - chr6_1:14808468-14808487 None:intergenic 30.0%
ATAAAACTCGAACACAAGAA+GGG + chr6_1:14808474-14808493 Msa0876550:CDS 30.0%
AATAATCAAAAGCTAGGTGG+TGG + chr6_1:14806555-14806574 Msa0876550:CDS 35.0%
TAGATTAGAAGAGACTAACC+AGG - chr6_1:14806666-14806685 None:intergenic 35.0%
! GATGCTCTCTTTAGATTTTG+AGG + chr6_1:14806901-14806920 Msa0876550:intron 35.0%
GAGGGTCATATACAAATTTG+TGG + chr6_1:14807057-14807076 Msa0876550:intron 35.0%
!! TTTTTGTTGTGAACTGTGAC+AGG + chr6_1:14807101-14807120 Msa0876550:intron 35.0%
TGTTCTTACCAAATGGAGTT+GGG - chr6_1:14807183-14807202 None:intergenic 35.0%
ATGTTCTTACCAAATGGAGT+TGG - chr6_1:14807184-14807203 None:intergenic 35.0%
AGCTTTCTTATAGATTGCAG+CGG + chr6_1:14807256-14807275 Msa0876550:intron 35.0%
AGTGACTATTGGATTGTGAT+CGG + chr6_1:14807314-14807333 Msa0876550:intron 35.0%
!! TTTTGAGTAGTTGCTTATGG+TGG + chr6_1:14807475-14807494 Msa0876550:intron 35.0%
!!! GCTACTAAGATTTTAGAACC+TGG + chr6_1:14807981-14808000 Msa0876550:CDS 35.0%
GGAAGATGCAAGAAAACATT+TGG - chr6_1:14808027-14808046 None:intergenic 35.0%
! ATTGGTAGGACACTTTGAAA+TGG - chr6_1:14808048-14808067 None:intergenic 35.0%
! TCAAAGTGTCCTACCAATAA+CGG + chr6_1:14808050-14808069 Msa0876550:CDS 35.0%
! GCGAAAACATCTGAAACAAT+AGG - chr6_1:14808212-14808231 None:intergenic 35.0%
! CACATATATTCTTCTGGAAG+TGG - chr6_1:14808378-14808397 None:intergenic 35.0%
TGCAAGCACATATATTCTTC+TGG - chr6_1:14808384-14808403 None:intergenic 35.0%
CATAAAACTCGAACACAAGA+AGG + chr6_1:14808473-14808492 Msa0876550:CDS 35.0%
AATAATCAAAAGCTAGGTGG+TGG + chr6_1:14806555-14806574 Msa0876550:CDS 35.0%
TAGATTAGAAGAGACTAACC+AGG - chr6_1:14806666-14806685 None:intergenic 35.0%
! GATGCTCTCTTTAGATTTTG+AGG + chr6_1:14806901-14806920 Msa0876550:intron 35.0%
GAGGGTCATATACAAATTTG+TGG + chr6_1:14807057-14807076 Msa0876550:intron 35.0%
!! TTTTTGTTGTGAACTGTGAC+AGG + chr6_1:14807101-14807120 Msa0876550:intron 35.0%
TGTTCTTACCAAATGGAGTT+GGG - chr6_1:14807183-14807202 None:intergenic 35.0%
ATGTTCTTACCAAATGGAGT+TGG - chr6_1:14807184-14807203 None:intergenic 35.0%
AGCTTTCTTATAGATTGCAG+CGG + chr6_1:14807256-14807275 Msa0876550:intron 35.0%
AGTGACTATTGGATTGTGAT+CGG + chr6_1:14807314-14807333 Msa0876550:intron 35.0%
!! TTTTGAGTAGTTGCTTATGG+TGG + chr6_1:14807475-14807494 Msa0876550:intron 35.0%
!!! GCTACTAAGATTTTAGAACC+TGG + chr6_1:14807981-14808000 Msa0876550:CDS 35.0%
GGAAGATGCAAGAAAACATT+TGG - chr6_1:14808027-14808046 None:intergenic 35.0%
! ATTGGTAGGACACTTTGAAA+TGG - chr6_1:14808048-14808067 None:intergenic 35.0%
! TCAAAGTGTCCTACCAATAA+CGG + chr6_1:14808050-14808069 Msa0876550:CDS 35.0%
! GCGAAAACATCTGAAACAAT+AGG - chr6_1:14808212-14808231 None:intergenic 35.0%
! CACATATATTCTTCTGGAAG+TGG - chr6_1:14808378-14808397 None:intergenic 35.0%
TGCAAGCACATATATTCTTC+TGG - chr6_1:14808384-14808403 None:intergenic 35.0%
CATAAAACTCGAACACAAGA+AGG + chr6_1:14808473-14808492 Msa0876550:CDS 35.0%
! AGTGATGATGCTAGTGTGAA+TGG + chr6_1:14806501-14806520 Msa0876550:CDS 40.0%
!!! AGGAGGAGGAAGAAGTTTTT+TGG - chr6_1:14806646-14806665 None:intergenic 40.0%
AAAAAACTTCTTCCTCCTCC+TGG + chr6_1:14806645-14806664 Msa0876550:CDS 40.0%
ATTAGAAGAGACTAACCAGG+AGG - chr6_1:14806663-14806682 None:intergenic 40.0%
TCGGATACAGACACAAACAT+TGG + chr6_1:14806745-14806764 Msa0876550:intron 40.0%
ACAGACACAAACATTGGACA+TGG + chr6_1:14806751-14806770 Msa0876550:intron 40.0%
!! ACTTGAGGTTGGTAGTGTAA+AGG + chr6_1:14806879-14806898 Msa0876550:intron 40.0%
!! TGGAAACTGATGAGAGTGTT+TGG + chr6_1:14807077-14807096 Msa0876550:intron 40.0%
ACCAAATGGAGTTGGGAATT+AGG - chr6_1:14807176-14807195 None:intergenic 40.0%
ACTATTGGATTGTGATCGGA+CGG + chr6_1:14807318-14807337 Msa0876550:intron 40.0%
TAGATTGCTAATGGGAACAG+TGG + chr6_1:14807528-14807547 Msa0876550:intron 40.0%
ATCAACCTAGCTACAAGACT+TGG - chr6_1:14807624-14807643 None:intergenic 40.0%
! AAGTCTTGTAGCTAGGTTGA+TGG + chr6_1:14807623-14807642 Msa0876550:CDS 40.0%
!! AGTCTTGTAGCTAGGTTGAT+GGG + chr6_1:14807624-14807643 Msa0876550:CDS 40.0%
!! TTCTGATAGTGATGATGGTG+AGG + chr6_1:14807698-14807717 Msa0876550:CDS 40.0%
AGATCAAAGCTACGAATGCA+AGG + chr6_1:14807730-14807749 Msa0876550:CDS 40.0%
GAAATTCTCGGACTCTTCAA+AGG - chr6_1:14807918-14807937 None:intergenic 40.0%
GAAGAGTCCGAGAATTTCTT+CGG + chr6_1:14807920-14807939 Msa0876550:CDS 40.0%
AAGAGTCCGAGAATTTCTTC+GGG + chr6_1:14807921-14807940 Msa0876550:CDS 40.0%
CTCTTTCCCGAAGAAATTCT+CGG - chr6_1:14807930-14807949 None:intergenic 40.0%
!!! GATTTTAGAACCTGGTTTGC+AGG + chr6_1:14807989-14808008 Msa0876550:CDS 40.0%
TTCTGTCACAATGCCGTTAT+TGG - chr6_1:14808066-14808085 None:intergenic 40.0%
TAACGGCATTGTGACAGAAA+TGG + chr6_1:14808067-14808086 Msa0876550:CDS 40.0%
TTCTGGCATAGACAAGTCAT+TGG + chr6_1:14808133-14808152 Msa0876550:CDS 40.0%
TCTGGCATAGACAAGTCATT+GGG + chr6_1:14808134-14808153 Msa0876550:CDS 40.0%
GAGCATACGTGCAAAAATTG+CGG + chr6_1:14808158-14808177 Msa0876550:CDS 40.0%
CATGAGTTATGATCTTCTCC+TGG - chr6_1:14808313-14808332 None:intergenic 40.0%
! AGTGATGATGCTAGTGTGAA+TGG + chr6_1:14806501-14806520 Msa0876550:CDS 40.0%
!!! AGGAGGAGGAAGAAGTTTTT+TGG - chr6_1:14806646-14806665 None:intergenic 40.0%
AAAAAACTTCTTCCTCCTCC+TGG + chr6_1:14806645-14806664 Msa0876550:CDS 40.0%
ATTAGAAGAGACTAACCAGG+AGG - chr6_1:14806663-14806682 None:intergenic 40.0%
TCGGATACAGACACAAACAT+TGG + chr6_1:14806745-14806764 Msa0876550:intron 40.0%
ACAGACACAAACATTGGACA+TGG + chr6_1:14806751-14806770 Msa0876550:intron 40.0%
!! ACTTGAGGTTGGTAGTGTAA+AGG + chr6_1:14806879-14806898 Msa0876550:intron 40.0%
!! TGGAAACTGATGAGAGTGTT+TGG + chr6_1:14807077-14807096 Msa0876550:intron 40.0%
ACCAAATGGAGTTGGGAATT+AGG - chr6_1:14807176-14807195 None:intergenic 40.0%
ACTATTGGATTGTGATCGGA+CGG + chr6_1:14807318-14807337 Msa0876550:intron 40.0%
TAGATTGCTAATGGGAACAG+TGG + chr6_1:14807528-14807547 Msa0876550:intron 40.0%
ATCAACCTAGCTACAAGACT+TGG - chr6_1:14807624-14807643 None:intergenic 40.0%
! AAGTCTTGTAGCTAGGTTGA+TGG + chr6_1:14807623-14807642 Msa0876550:CDS 40.0%
!! AGTCTTGTAGCTAGGTTGAT+GGG + chr6_1:14807624-14807643 Msa0876550:CDS 40.0%
!! TTCTGATAGTGATGATGGTG+AGG + chr6_1:14807698-14807717 Msa0876550:CDS 40.0%
AGATCAAAGCTACGAATGCA+AGG + chr6_1:14807730-14807749 Msa0876550:CDS 40.0%
GAAATTCTCGGACTCTTCAA+AGG - chr6_1:14807918-14807937 None:intergenic 40.0%
GAAGAGTCCGAGAATTTCTT+CGG + chr6_1:14807920-14807939 Msa0876550:CDS 40.0%
AAGAGTCCGAGAATTTCTTC+GGG + chr6_1:14807921-14807940 Msa0876550:CDS 40.0%
CTCTTTCCCGAAGAAATTCT+CGG - chr6_1:14807930-14807949 None:intergenic 40.0%
!!! GATTTTAGAACCTGGTTTGC+AGG + chr6_1:14807989-14808008 Msa0876550:CDS 40.0%
TTCTGTCACAATGCCGTTAT+TGG - chr6_1:14808066-14808085 None:intergenic 40.0%
TAACGGCATTGTGACAGAAA+TGG + chr6_1:14808067-14808086 Msa0876550:CDS 40.0%
TTCTGGCATAGACAAGTCAT+TGG + chr6_1:14808133-14808152 Msa0876550:CDS 40.0%
TCTGGCATAGACAAGTCATT+GGG + chr6_1:14808134-14808153 Msa0876550:CDS 40.0%
GAGCATACGTGCAAAAATTG+CGG + chr6_1:14808158-14808177 Msa0876550:CDS 40.0%
CATGAGTTATGATCTTCTCC+TGG - chr6_1:14808313-14808332 None:intergenic 40.0%
! AAGCTAGGTGGTGGTTGTAT+TGG + chr6_1:14806564-14806583 Msa0876550:CDS 45.0%
TTCGTAGTATCACGCACTTG+AGG + chr6_1:14806864-14806883 Msa0876550:intron 45.0%
TAGTATCACGCACTTGAGGT+TGG + chr6_1:14806868-14806887 Msa0876550:intron 45.0%
GCCTAATTCCCAACTCCATT+TGG + chr6_1:14807172-14807191 Msa0876550:CDS 45.0%
GTCAACACGTCAGTGACTAT+TGG + chr6_1:14807303-14807322 Msa0876550:intron 45.0%
AGCCATAGGTCAAGTTCGAA+CGG - chr6_1:14807404-14807423 None:intergenic 45.0%
GTCAACACATCAGAAGCCAT+AGG - chr6_1:14807418-14807437 None:intergenic 45.0%
ATTGCTAATGGGAACAGTGG+AGG + chr6_1:14807531-14807550 Msa0876550:CDS 45.0%
! AAGCACCAAGTCTTGTAGCT+AGG + chr6_1:14807616-14807635 Msa0876550:CDS 45.0%
!! TGATGATGGTGAGGAGTCTT+TGG + chr6_1:14807707-14807726 Msa0876550:CDS 45.0%
AGAAGAGCAGTGACTAGGTT+TGG + chr6_1:14807798-14807817 Msa0876550:CDS 45.0%
AGAGTACATCTCGAAGCTCA+AGG + chr6_1:14807946-14807965 Msa0876550:CDS 45.0%
GTCACAATGCCGTTATTGGT+AGG - chr6_1:14808062-14808081 None:intergenic 45.0%
TGACAGAAATGGCTGGAACT+CGG + chr6_1:14808078-14808097 Msa0876550:CDS 45.0%
CTGGCATAGACAAGTCATTG+GGG + chr6_1:14808135-14808154 Msa0876550:CDS 45.0%
TGGCATAGACAAGTCATTGG+GGG + chr6_1:14808136-14808155 Msa0876550:CDS 45.0%
CGCTGATGCTGAAGAGAAAT+CGG - chr6_1:14808234-14808253 None:intergenic 45.0%
TGTAGTTCTTCTCAGAAGCC+AGG + chr6_1:14808292-14808311 Msa0876550:CDS 45.0%
! AAGCTAGGTGGTGGTTGTAT+TGG + chr6_1:14806564-14806583 Msa0876550:CDS 45.0%
TTCGTAGTATCACGCACTTG+AGG + chr6_1:14806864-14806883 Msa0876550:intron 45.0%
TAGTATCACGCACTTGAGGT+TGG + chr6_1:14806868-14806887 Msa0876550:intron 45.0%
GCCTAATTCCCAACTCCATT+TGG + chr6_1:14807172-14807191 Msa0876550:CDS 45.0%
GTCAACACGTCAGTGACTAT+TGG + chr6_1:14807303-14807322 Msa0876550:intron 45.0%
AGCCATAGGTCAAGTTCGAA+CGG - chr6_1:14807404-14807423 None:intergenic 45.0%
GTCAACACATCAGAAGCCAT+AGG - chr6_1:14807418-14807437 None:intergenic 45.0%
ATTGCTAATGGGAACAGTGG+AGG + chr6_1:14807531-14807550 Msa0876550:CDS 45.0%
! AAGCACCAAGTCTTGTAGCT+AGG + chr6_1:14807616-14807635 Msa0876550:CDS 45.0%
!! TGATGATGGTGAGGAGTCTT+TGG + chr6_1:14807707-14807726 Msa0876550:CDS 45.0%
AGAAGAGCAGTGACTAGGTT+TGG + chr6_1:14807798-14807817 Msa0876550:CDS 45.0%
AGAGTACATCTCGAAGCTCA+AGG + chr6_1:14807946-14807965 Msa0876550:CDS 45.0%
GTCACAATGCCGTTATTGGT+AGG - chr6_1:14808062-14808081 None:intergenic 45.0%
TGACAGAAATGGCTGGAACT+CGG + chr6_1:14808078-14808097 Msa0876550:CDS 45.0%
CTGGCATAGACAAGTCATTG+GGG + chr6_1:14808135-14808154 Msa0876550:CDS 45.0%
TGGCATAGACAAGTCATTGG+GGG + chr6_1:14808136-14808155 Msa0876550:CDS 45.0%
CGCTGATGCTGAAGAGAAAT+CGG - chr6_1:14808234-14808253 None:intergenic 45.0%
TGTAGTTCTTCTCAGAAGCC+AGG + chr6_1:14808292-14808311 Msa0876550:CDS 45.0%
AGAAGAGACTAACCAGGAGG+AGG - chr6_1:14806660-14806679 None:intergenic 50.0%
! CAGTGTCGGACATGTGTTCA+AGG + chr6_1:14806830-14806849 Msa0876550:intron 50.0%
GACCGTTCGAACTTGACCTA+TGG + chr6_1:14807399-14807418 Msa0876550:intron 50.0%
CGAATGCAAGGCATGAGTCA+AGG + chr6_1:14807742-14807761 Msa0876550:CDS 50.0%
AGTCAAGGCCTCAGAAGCTT+CGG + chr6_1:14807757-14807776 Msa0876550:CDS 50.0%
GCCTCAGAAGCTTCGGAAAA+CGG + chr6_1:14807764-14807783 Msa0876550:CDS 50.0%
! TCCGTTTTCCGAAGCTTCTG+AGG - chr6_1:14807768-14807787 None:intergenic 50.0%
TCAGAAGCTTCGGAAAACGG+AGG + chr6_1:14807767-14807786 Msa0876550:CDS 50.0%
ACGAGAGAAGAGCAGTGACT+AGG + chr6_1:14807793-14807812 Msa0876550:CDS 50.0%
CTGTTTGTAGCCTGCAAACC+AGG - chr6_1:14808002-14808021 None:intergenic 50.0%
GGCATTGTGACAGAAATGGC+TGG + chr6_1:14808071-14808090 Msa0876550:CDS 50.0%
TCATCCTCTAAGCCTCCATG+CGG - chr6_1:14808428-14808447 None:intergenic 50.0%
CATGGAGGCTTAGAGGATGA+TGG + chr6_1:14808428-14808447 Msa0876550:CDS 50.0%
AGAAGAGACTAACCAGGAGG+AGG - chr6_1:14806660-14806679 None:intergenic 50.0%
! CAGTGTCGGACATGTGTTCA+AGG + chr6_1:14806830-14806849 Msa0876550:intron 50.0%
GACCGTTCGAACTTGACCTA+TGG + chr6_1:14807399-14807418 Msa0876550:intron 50.0%
CGAATGCAAGGCATGAGTCA+AGG + chr6_1:14807742-14807761 Msa0876550:CDS 50.0%
AGTCAAGGCCTCAGAAGCTT+CGG + chr6_1:14807757-14807776 Msa0876550:CDS 50.0%
GCCTCAGAAGCTTCGGAAAA+CGG + chr6_1:14807764-14807783 Msa0876550:CDS 50.0%
! TCCGTTTTCCGAAGCTTCTG+AGG - chr6_1:14807768-14807787 None:intergenic 50.0%
TCAGAAGCTTCGGAAAACGG+AGG + chr6_1:14807767-14807786 Msa0876550:CDS 50.0%
ACGAGAGAAGAGCAGTGACT+AGG + chr6_1:14807793-14807812 Msa0876550:CDS 50.0%
CTGTTTGTAGCCTGCAAACC+AGG - chr6_1:14808002-14808021 None:intergenic 50.0%
GGCATTGTGACAGAAATGGC+TGG + chr6_1:14808071-14808090 Msa0876550:CDS 50.0%
TCATCCTCTAAGCCTCCATG+CGG - chr6_1:14808428-14808447 None:intergenic 50.0%
CATGGAGGCTTAGAGGATGA+TGG + chr6_1:14808428-14808447 Msa0876550:CDS 50.0%
GATTCATCGCGCAAACCGCA+TGG + chr6_1:14808410-14808429 Msa0876550:CDS 55.0%
CAAACCGCATGGAGGCTTAG+AGG + chr6_1:14808421-14808440 Msa0876550:CDS 55.0%
GATTCATCGCGCAAACCGCA+TGG + chr6_1:14808410-14808429 Msa0876550:CDS 55.0%
CAAACCGCATGGAGGCTTAG+AGG + chr6_1:14808421-14808440 Msa0876550:CDS 55.0%
TCATCGCGCAAACCGCATGG+AGG + chr6_1:14808413-14808432 Msa0876550:CDS 60.0%
TCATCGCGCAAACCGCATGG+AGG + chr6_1:14808413-14808432 Msa0876550:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 14806498 14808589 14806498 ID=Msa0876550;Name=Msa0876550
chr6_1 mRNA 14806498 14808589 14806498 ID=Msa0876550-mRNA-1;Parent=Msa0876550;Name=Msa0876550-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|1|1|3|0|432
chr6_1 exon 14806498 14806666 14806498 ID=Msa0876550-mRNA-1:exon:4246;Parent=Msa0876550-mRNA-1
chr6_1 exon 14807123 14807193 14807123 ID=Msa0876550-mRNA-1:exon:4247;Parent=Msa0876550-mRNA-1
chr6_1 exon 14807531 14808589 14807531 ID=Msa0876550-mRNA-1:exon:4248;Parent=Msa0876550-mRNA-1
chr6_1 CDS 14806498 14806666 14806498 ID=Msa0876550-mRNA-1:cds;Parent=Msa0876550-mRNA-1
chr6_1 CDS 14807123 14807193 14807123 ID=Msa0876550-mRNA-1:cds;Parent=Msa0876550-mRNA-1
chr6_1 CDS 14807531 14808589 14807531 ID=Msa0876550-mRNA-1:cds;Parent=Msa0876550-mRNA-1
Gene Sequence

>Msa0876550

ATGAGTGATGATGCTAGTGTGAATGGTTCTTCTTGTTTAGCAATAACTGAGAAGAAGAATAATCAAAAGCTAGGTGGTGGTTGTATTGGAATTTTCTCTCAGCTATTTGATTGGAATAGTAGACTCACAAAGAAGAGATTTTTCACCAAAAAACTTCTTCCTCCTCCTGGTAGTGCAAAACAAGATTCTTTGAAGAAGTTTAAAGGAGATGACAAAATGCCTAATTCCCAACTCCATTTGATTGCTAATGGGAACAGTGGAGGTTTTTCAAATGCGAAAAAAAGTGGGAATTGTGTTATAGAAGTAGAACAAAAGCATGAAATGAAAGCACCAAGTCTTGTAGCTAGGTTGATGGGTCTAGAATCAATTCCATCTTCAAAGAGAGATAAATCCAATAAATCTTCATTTTCTGATAGTGATGATGGTGAGGAGTCTTTGGAGATCAAAGCTACGAATGCAAGGCATGAGTCAAGGCCTCAGAAGCTTCGGAAAACGGAGGCGAACGAGAGAAGAGCAGTGACTAGGTTTGGTGCTGATGCATTGCAAATCAAGAGTGTTTTGTCACAAGTGAAAAGATATAATCATCATCGTCACAATCACCATCACGCTAATAAACTTGTTTCGCCTTTGAAGAGTCCGAGAATTTCTTCGGGAAAGAGTACATCTCGAAGCTCAAGGTTGATAGACGCAGCTACTAAGATTTTAGAACCTGGTTTGCAGGCTACAAACAGATCCAAATGTTTTCTTGCATCTTCCATTTCAAAGTGTCCTACCAATAACGGCATTGTGACAGAAATGGCTGGAACTCGGCCACAAGATATACAGAATCAATCATGTTATAATTCTGGCATAGACAAGTCATTGGGGGAGCATACGTGCAAAAATTGCGGCAATTCGCTTGATGTTGAGATCAGAAGACCTATTGTTTCAGATGTTTTCGCCGATTTCTCTTCAGCATCAGCGAAAAACGAAAGATCATTCATACCGTCTCATGAAAATGATGTAGTTCTTCTCAGAAGCCAGGAGAAGATCATAACTCATGTTGATGATGATGTTAAAAAGAATGCTTATGCTTGTAATGAATCCACTTCCAGAAGAATATATGTGCTTGCAAAATGCGATTCATCGCGCAAACCGCATGGAGGCTTAGAGGATGATGGTGTATCGTCTTTTTCCTTCAAACATAAAACTCGAACACAAGAAGGGATGTTAAGCAATGAAAGAATATCATTTGAATCTAGAAATAGTAATATGCAAGAGAAGAGATATAAAAAGATATATTTAATCAACATAATTTAA

Protein sequence

>Msa0876550

MSDDASVNGSSCLAITEKKNNQKLGGGCIGIFSQLFDWNSRLTKKRFFTKKLLPPPGSAKQDSLKKFKGDDKMPNSQLHLIANGNSGGFSNAKKSGNCVIEVEQKHEMKAPSLVARLMGLESIPSSKRDKSNKSSFSDSDDGEESLEIKATNARHESRPQKLRKTEANERRAVTRFGADALQIKSVLSQVKRYNHHRHNHHHANKLVSPLKSPRISSGKSTSRSSRLIDAATKILEPGLQATNRSKCFLASSISKCPTNNGIVTEMAGTRPQDIQNQSCYNSGIDKSLGEHTCKNCGNSLDVEIRRPIVSDVFADFSSASAKNERSFIPSHENDVVLLRSQEKIITHVDDDVKKNAYACNESTSRRIYVLAKCDSSRKPHGGLEDDGVSSFSFKHKTRTQEGMLSNERISFESRNSNMQEKRYKKIYLINII*