AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1019470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1019470 MtrunA17_Chr7g0235211 91.375 429 12 1 1 404 1 429 0.0 770
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1019470 AT3G25130.1 54.688 64 25 2 1 60 1 64 1.88e-11 65.9

Find 67 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAAAAGATAGGAGTTTA+AGG 0.164367 7_1:-41198038 None:intergenic
CAAAGACTAAATGAAGATTT+TGG 0.193613 7_1:+41198716 Msa1019470:CDS
TCAACAGGGAAGATGAATTT+AGG 0.246896 7_1:+41199070 Msa1019470:CDS
TGTTCTAATCTTGGAAGTTT+TGG 0.255756 7_1:+41198797 Msa1019470:CDS
ACACTATGGTCCATTGAAAA+TGG 0.271896 7_1:+41198638 Msa1019470:CDS
GATGATAAAGATGAGGAAAT+TGG 0.284728 7_1:+41198240 Msa1019470:CDS
GATAGGAGTTTAAGGATATA+TGG 0.294167 7_1:-41198030 None:intergenic
TCCAATACCTTTCAAAGCTT+TGG 0.297202 7_1:-41199122 None:intergenic
TCCAAAGCTTTGAAAGGTAT+TGG 0.299212 7_1:+41199121 Msa1019470:CDS
GAAGAAGTTTGTTCTAATCT+TGG 0.301550 7_1:+41198788 Msa1019470:CDS
ATATAAAGGGTGAGAAAATA+TGG 0.310053 7_1:-41197983 None:intergenic
GAGTTTAGTGATGATGAGTT+AGG 0.313788 7_1:+41198998 Msa1019470:CDS
AAAATATGGAGAAACATAAA+TGG 0.320936 7_1:-41197969 None:intergenic
TGGAGAAAAGAAGAGAAAAT+AGG 0.323440 7_1:-41198010 None:intergenic
AGAAGTAGTCAAGCCTATAT+TGG 0.332436 7_1:+41198580 Msa1019470:CDS
TGATGATGAGTTAGGGGAAG+AGG 0.338584 7_1:+41199006 Msa1019470:CDS
CCCTTATGATGAACAAGGTT+TGG 0.357047 7_1:-41198117 None:intergenic
TTGAATTTAGTATCCAATAT+AGG 0.358936 7_1:-41198593 None:intergenic
GGAAGTAGTTGAATCCATTA+AGG 0.375306 7_1:+41198469 Msa1019470:CDS
CAAGCTTTGAAATTCTCAAC+AGG 0.378595 7_1:+41199055 Msa1019470:CDS
GTGAAGGAATGGATATGCTT+TGG 0.388433 7_1:+41198900 Msa1019470:CDS
AGAGAACTCATTGTTCTTGT+TGG 0.389427 7_1:-41197923 None:intergenic
TGAAGGAATGGATATGCTTT+GGG 0.392510 7_1:+41198901 Msa1019470:CDS
ACAAAGGAGAAAGAAAAGAT+AGG 0.408934 7_1:-41198047 None:intergenic
GAGTATGGTGGAAAAGGTAT+AGG 0.411829 7_1:+41198758 Msa1019470:CDS
AAAAGAGGTTTATTGTCAAA+TGG 0.412280 7_1:+41198397 Msa1019470:CDS
AGTTTAGTGATGATGAGTTA+GGG 0.415821 7_1:+41198999 Msa1019470:CDS
AGAAAACAAAGTTGAGAAAG+TGG 0.418260 7_1:+41198448 Msa1019470:CDS
TCCAAACCTTGTTCATCATA+AGG 0.418746 7_1:+41198116 Msa1019470:CDS
AGTATGGTGGAAAAGGTATA+GGG 0.423952 7_1:+41198759 Msa1019470:CDS
TTGGAGAATTTGACAAGGTT+AGG 0.431973 7_1:-41199103 None:intergenic
AAGAAAAGTAACACAAAGAA+AGG 0.440269 7_1:+41198956 Msa1019470:CDS
AGAAAATGTGTCTTGTGAAA+AGG 0.452614 7_1:+41198550 Msa1019470:CDS
GTCTCTATTACCCTTCACTT+TGG 0.467195 7_1:-41198663 None:intergenic
GAGTTAGGGGAAGAGGAGGT+AGG 0.471390 7_1:+41199013 Msa1019470:CDS
TTGCATCATGTAGGCAAGAA+TGG 0.480234 7_1:+41199148 Msa1019470:CDS
AATTGGGAGTATGGTGGAAA+AGG 0.481166 7_1:+41198752 Msa1019470:CDS
CCAAACCTTGTTCATCATAA+GGG 0.483006 7_1:+41198117 Msa1019470:CDS
GGATACTAAATTCAATAAAG+TGG 0.514253 7_1:+41198601 Msa1019470:CDS
AGGGAAGATGAATTTAGGAA+TGG 0.516981 7_1:+41199075 Msa1019470:CDS
TGATGAGTTAGGGGAAGAGG+AGG 0.523787 7_1:+41199009 Msa1019470:CDS
AAGCTTTGAAAGGTATTGGA+TGG 0.532498 7_1:+41199125 Msa1019470:CDS
AGAGTAGTGGTAATGAACAA+AGG 0.533254 7_1:-41198063 None:intergenic
GGGAAGATGAATTTAGGAAT+GGG 0.537973 7_1:+41199076 Msa1019470:CDS
TGGTGATGGAAGTGAAGGAA+TGG 0.552101 7_1:+41198889 Msa1019470:CDS
AAGAAAGCAAAGAAACACTA+TGG 0.554986 7_1:+41198624 Msa1019470:CDS
AAAAGAATGGAGAAGGACAT+TGG 0.560357 7_1:+41198835 Msa1019470:CDS
GTTTAGTGATGATGAGTTAG+GGG 0.564101 7_1:+41199000 Msa1019470:CDS
TTGAGAGTTATGAGTCCAAA+TGG 0.565581 7_1:+41198169 Msa1019470:CDS
AGAAAAGTAACACAAAGAAA+GGG 0.575353 7_1:+41198957 Msa1019470:CDS
GAAAGACACAACAATGGTGA+TGG 0.579519 7_1:+41198875 Msa1019470:CDS
AAATTCTCCAAAGCTTTGAA+AGG 0.585068 7_1:+41199115 Msa1019470:CDS
AACAATGGTGATGGAAGTGA+AGG 0.586991 7_1:+41198884 Msa1019470:CDS
TGAAAATGGATCCAAAGTGA+AGG 0.588660 7_1:+41198652 Msa1019470:CDS
GAAAATGGATCCAAAGTGAA+GGG 0.600047 7_1:+41198653 Msa1019470:CDS
AACAAGGAGAAGAAGAGTAG+TGG 0.608591 7_1:-41198076 None:intergenic
AAAAGCAATTGGGAGTATGG+TGG 0.613321 7_1:+41198746 Msa1019470:CDS
TGAAGCTGATGATAAAGATG+AGG 0.620705 7_1:+41198233 Msa1019470:CDS
TACTACCCTTATGATGAACA+AGG 0.626229 7_1:-41198122 None:intergenic
ATTGGATGGTTGCATCATGT+AGG 0.636955 7_1:+41199139 Msa1019470:CDS
AGATGAATTTAGGAATGGGA+AGG 0.640076 7_1:+41199080 Msa1019470:CDS
AAGCTTTGAAATTCTCAACA+GGG 0.664595 7_1:+41199056 Msa1019470:CDS
AATGGAACAAGACAGTGAAG+AGG 0.664688 7_1:-41197951 None:intergenic
AAGCTTTGGAGAATTTGACA+AGG 0.677569 7_1:-41199108 None:intergenic
TTTGAGGAAAGACACAACAA+TGG 0.678386 7_1:+41198869 Msa1019470:CDS
TGAAAGTAAGAAAAGCAACA+AGG 0.686262 7_1:-41198092 None:intergenic
ATATGAGAAAGAATCAAACA+AGG 0.721458 7_1:+41198928 Msa1019470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAATAGGAAAAATATAAA+GGG - chr7_1:41197999-41198018 None:intergenic 15.0%
!! AGAAAATAGGAAAAATATAA+AGG - chr7_1:41198000-41198019 None:intergenic 15.0%
!! GAAAATAGGAAAAATATAAA+GGG - chr7_1:41197999-41198018 None:intergenic 15.0%
!! AGAAAATAGGAAAAATATAA+AGG - chr7_1:41198000-41198019 None:intergenic 15.0%
!! AAAATATGGAGAAACATAAA+TGG - chr7_1:41197972-41197991 None:intergenic 20.0%
!! TTGAATTTAGTATCCAATAT+AGG - chr7_1:41198596-41198615 None:intergenic 20.0%
!! AAAATATGGAGAAACATAAA+TGG - chr7_1:41197972-41197991 None:intergenic 20.0%
!! TTGAATTTAGTATCCAATAT+AGG - chr7_1:41198596-41198615 None:intergenic 20.0%
! ATATAAAGGGTGAGAAAATA+TGG - chr7_1:41197986-41198005 None:intergenic 25.0%
! AAAGAAAAGATAGGAGTTTA+AGG - chr7_1:41198041-41198060 None:intergenic 25.0%
! AGAAAGAAAAAAACACCATT+TGG - chr7_1:41198187-41198206 None:intergenic 25.0%
!! CATATCAGTTGAAGATTTTT+CGG + chr7_1:41198334-41198353 Msa1019470:intron 25.0%
! AAAAGAGGTTTATTGTCAAA+TGG + chr7_1:41198397-41198416 Msa1019470:CDS 25.0%
!!! TAACACTTTTTCTTCCTTAA+TGG - chr7_1:41198486-41198505 None:intergenic 25.0%
! GGATACTAAATTCAATAAAG+TGG + chr7_1:41198601-41198620 Msa1019470:CDS 25.0%
!! CAAAGACTAAATGAAGATTT+TGG + chr7_1:41198716-41198735 Msa1019470:CDS 25.0%
! ATATGAGAAAGAATCAAACA+AGG + chr7_1:41198928-41198947 Msa1019470:CDS 25.0%
! AAGAAAAGTAACACAAAGAA+AGG + chr7_1:41198956-41198975 Msa1019470:CDS 25.0%
! AGAAAAGTAACACAAAGAAA+GGG + chr7_1:41198957-41198976 Msa1019470:CDS 25.0%
! ATATAAAGGGTGAGAAAATA+TGG - chr7_1:41197986-41198005 None:intergenic 25.0%
! AAAGAAAAGATAGGAGTTTA+AGG - chr7_1:41198041-41198060 None:intergenic 25.0%
! AGAAAGAAAAAAACACCATT+TGG - chr7_1:41198187-41198206 None:intergenic 25.0%
!! CATATCAGTTGAAGATTTTT+CGG + chr7_1:41198334-41198353 Msa1019470:intron 25.0%
! AAAAGAGGTTTATTGTCAAA+TGG + chr7_1:41198397-41198416 Msa1019470:CDS 25.0%
!!! TAACACTTTTTCTTCCTTAA+TGG - chr7_1:41198486-41198505 None:intergenic 25.0%
! GGATACTAAATTCAATAAAG+TGG + chr7_1:41198601-41198620 Msa1019470:CDS 25.0%
!! CAAAGACTAAATGAAGATTT+TGG + chr7_1:41198716-41198735 Msa1019470:CDS 25.0%
! ATATGAGAAAGAATCAAACA+AGG + chr7_1:41198928-41198947 Msa1019470:CDS 25.0%
! AAGAAAAGTAACACAAAGAA+AGG + chr7_1:41198956-41198975 Msa1019470:CDS 25.0%
! AGAAAAGTAACACAAAGAAA+GGG + chr7_1:41198957-41198976 Msa1019470:CDS 25.0%
TGGAGAAAAGAAGAGAAAAT+AGG - chr7_1:41198013-41198032 None:intergenic 30.0%
GATAGGAGTTTAAGGATATA+TGG - chr7_1:41198033-41198052 None:intergenic 30.0%
ACAAAGGAGAAAGAAAAGAT+AGG - chr7_1:41198050-41198069 None:intergenic 30.0%
TGAAAGTAAGAAAAGCAACA+AGG - chr7_1:41198095-41198114 None:intergenic 30.0%
!! TTTTGCAAACTTTTCTAGCA+TGG + chr7_1:41198208-41198227 Msa1019470:CDS 30.0%
GATGATAAAGATGAGGAAAT+TGG + chr7_1:41198240-41198259 Msa1019470:CDS 30.0%
!! AATTGGTTTGCTTAATGAGT+TGG + chr7_1:41198257-41198276 Msa1019470:intron 30.0%
! TAATGAGTTGGAAGCATATT+TGG + chr7_1:41198269-41198288 Msa1019470:intron 30.0%
! GTTTTCAGTTGAAGAAAAAG+AGG + chr7_1:41198382-41198401 Msa1019470:CDS 30.0%
TGAAGAGAAAAAAGTGAACT+TGG + chr7_1:41198421-41198440 Msa1019470:CDS 30.0%
AGAAAACAAAGTTGAGAAAG+TGG + chr7_1:41198448-41198467 Msa1019470:CDS 30.0%
AGAAAATGTGTCTTGTGAAA+AGG + chr7_1:41198550-41198569 Msa1019470:CDS 30.0%
AAGAAAGCAAAGAAACACTA+TGG + chr7_1:41198624-41198643 Msa1019470:CDS 30.0%
! GAAGAAGTTTGTTCTAATCT+TGG + chr7_1:41198788-41198807 Msa1019470:CDS 30.0%
! TGTTCTAATCTTGGAAGTTT+TGG + chr7_1:41198797-41198816 Msa1019470:CDS 30.0%
! AGTTTAGTGATGATGAGTTA+GGG + chr7_1:41198999-41199018 Msa1019470:CDS 30.0%
!! AAGCTTTGAAATTCTCAACA+GGG + chr7_1:41199056-41199075 Msa1019470:CDS 30.0%
!! AAATTCTCCAAAGCTTTGAA+AGG + chr7_1:41199115-41199134 Msa1019470:CDS 30.0%
TGGAGAAAAGAAGAGAAAAT+AGG - chr7_1:41198013-41198032 None:intergenic 30.0%
GATAGGAGTTTAAGGATATA+TGG - chr7_1:41198033-41198052 None:intergenic 30.0%
ACAAAGGAGAAAGAAAAGAT+AGG - chr7_1:41198050-41198069 None:intergenic 30.0%
TGAAAGTAAGAAAAGCAACA+AGG - chr7_1:41198095-41198114 None:intergenic 30.0%
!! TTTTGCAAACTTTTCTAGCA+TGG + chr7_1:41198208-41198227 Msa1019470:CDS 30.0%
GATGATAAAGATGAGGAAAT+TGG + chr7_1:41198240-41198259 Msa1019470:CDS 30.0%
!! AATTGGTTTGCTTAATGAGT+TGG + chr7_1:41198257-41198276 Msa1019470:intron 30.0%
! TAATGAGTTGGAAGCATATT+TGG + chr7_1:41198269-41198288 Msa1019470:intron 30.0%
! GTTTTCAGTTGAAGAAAAAG+AGG + chr7_1:41198382-41198401 Msa1019470:CDS 30.0%
TGAAGAGAAAAAAGTGAACT+TGG + chr7_1:41198421-41198440 Msa1019470:CDS 30.0%
AGAAAACAAAGTTGAGAAAG+TGG + chr7_1:41198448-41198467 Msa1019470:CDS 30.0%
AGAAAATGTGTCTTGTGAAA+AGG + chr7_1:41198550-41198569 Msa1019470:CDS 30.0%
AAGAAAGCAAAGAAACACTA+TGG + chr7_1:41198624-41198643 Msa1019470:CDS 30.0%
! GAAGAAGTTTGTTCTAATCT+TGG + chr7_1:41198788-41198807 Msa1019470:CDS 30.0%
! TGTTCTAATCTTGGAAGTTT+TGG + chr7_1:41198797-41198816 Msa1019470:CDS 30.0%
! AGTTTAGTGATGATGAGTTA+GGG + chr7_1:41198999-41199018 Msa1019470:CDS 30.0%
!! AAGCTTTGAAATTCTCAACA+GGG + chr7_1:41199056-41199075 Msa1019470:CDS 30.0%
!! AAATTCTCCAAAGCTTTGAA+AGG + chr7_1:41199115-41199134 Msa1019470:CDS 30.0%
AGAGAACTCATTGTTCTTGT+TGG - chr7_1:41197926-41197945 None:intergenic 35.0%
! AGAGTAGTGGTAATGAACAA+AGG - chr7_1:41198066-41198085 None:intergenic 35.0%
TCCAAACCTTGTTCATCATA+AGG + chr7_1:41198116-41198135 Msa1019470:CDS 35.0%
CCAAACCTTGTTCATCATAA+GGG + chr7_1:41198117-41198136 Msa1019470:CDS 35.0%
TACTACCCTTATGATGAACA+AGG - chr7_1:41198125-41198144 None:intergenic 35.0%
TTGAGAGTTATGAGTCCAAA+TGG + chr7_1:41198169-41198188 Msa1019470:CDS 35.0%
TGAAGCTGATGATAAAGATG+AGG + chr7_1:41198233-41198252 Msa1019470:CDS 35.0%
GAACTTCAAAGATTGAAGCT+TGG - chr7_1:41198302-41198321 None:intergenic 35.0%
GGAAGTAGTTGAATCCATTA+AGG + chr7_1:41198469-41198488 Msa1019470:CDS 35.0%
AGAAGTAGTCAAGCCTATAT+TGG + chr7_1:41198580-41198599 Msa1019470:CDS 35.0%
ACACTATGGTCCATTGAAAA+TGG + chr7_1:41198638-41198657 Msa1019470:CDS 35.0%
! CACTTTGGATCCATTTTCAA+TGG - chr7_1:41198651-41198670 None:intergenic 35.0%
TGAAAATGGATCCAAAGTGA+AGG + chr7_1:41198652-41198671 Msa1019470:CDS 35.0%
GAAAATGGATCCAAAGTGAA+GGG + chr7_1:41198653-41198672 Msa1019470:CDS 35.0%
TTGGAAGTCCAAAAAGCAAT+TGG + chr7_1:41198735-41198754 Msa1019470:CDS 35.0%
TGGAAGTCCAAAAAGCAATT+GGG + chr7_1:41198736-41198755 Msa1019470:CDS 35.0%
! AGTATGGTGGAAAAGGTATA+GGG + chr7_1:41198759-41198778 Msa1019470:CDS 35.0%
!!! AAGTTTTGGTTCAATGAGAG+TGG + chr7_1:41198811-41198830 Msa1019470:CDS 35.0%
CAATGAGAGTGGAAAAAGAA+TGG + chr7_1:41198822-41198841 Msa1019470:CDS 35.0%
AAAAGAATGGAGAAGGACAT+TGG + chr7_1:41198835-41198854 Msa1019470:CDS 35.0%
TTTGAGGAAAGACACAACAA+TGG + chr7_1:41198869-41198888 Msa1019470:CDS 35.0%
TGAAGGAATGGATATGCTTT+GGG + chr7_1:41198901-41198920 Msa1019470:CDS 35.0%
! GAGTTTAGTGATGATGAGTT+AGG + chr7_1:41198998-41199017 Msa1019470:CDS 35.0%
! GTTTAGTGATGATGAGTTAG+GGG + chr7_1:41199000-41199019 Msa1019470:CDS 35.0%
!! CAAGCTTTGAAATTCTCAAC+AGG + chr7_1:41199055-41199074 Msa1019470:CDS 35.0%
TCAACAGGGAAGATGAATTT+AGG + chr7_1:41199070-41199089 Msa1019470:CDS 35.0%
AGGGAAGATGAATTTAGGAA+TGG + chr7_1:41199075-41199094 Msa1019470:CDS 35.0%
GGGAAGATGAATTTAGGAAT+GGG + chr7_1:41199076-41199095 Msa1019470:CDS 35.0%
AGATGAATTTAGGAATGGGA+AGG + chr7_1:41199080-41199099 Msa1019470:CDS 35.0%
TTGGAGAATTTGACAAGGTT+AGG - chr7_1:41199106-41199125 None:intergenic 35.0%
!! AAGCTTTGGAGAATTTGACA+AGG - chr7_1:41199111-41199130 None:intergenic 35.0%
!! TCCAAAGCTTTGAAAGGTAT+TGG + chr7_1:41199121-41199140 Msa1019470:CDS 35.0%
TCCAATACCTTTCAAAGCTT+TGG - chr7_1:41199125-41199144 None:intergenic 35.0%
!! AAGCTTTGAAAGGTATTGGA+TGG + chr7_1:41199125-41199144 Msa1019470:CDS 35.0%
AGAGAACTCATTGTTCTTGT+TGG - chr7_1:41197926-41197945 None:intergenic 35.0%
! AGAGTAGTGGTAATGAACAA+AGG - chr7_1:41198066-41198085 None:intergenic 35.0%
TCCAAACCTTGTTCATCATA+AGG + chr7_1:41198116-41198135 Msa1019470:CDS 35.0%
CCAAACCTTGTTCATCATAA+GGG + chr7_1:41198117-41198136 Msa1019470:CDS 35.0%
TACTACCCTTATGATGAACA+AGG - chr7_1:41198125-41198144 None:intergenic 35.0%
TTGAGAGTTATGAGTCCAAA+TGG + chr7_1:41198169-41198188 Msa1019470:CDS 35.0%
TGAAGCTGATGATAAAGATG+AGG + chr7_1:41198233-41198252 Msa1019470:CDS 35.0%
GAACTTCAAAGATTGAAGCT+TGG - chr7_1:41198302-41198321 None:intergenic 35.0%
GGAAGTAGTTGAATCCATTA+AGG + chr7_1:41198469-41198488 Msa1019470:CDS 35.0%
AGAAGTAGTCAAGCCTATAT+TGG + chr7_1:41198580-41198599 Msa1019470:CDS 35.0%
ACACTATGGTCCATTGAAAA+TGG + chr7_1:41198638-41198657 Msa1019470:CDS 35.0%
! CACTTTGGATCCATTTTCAA+TGG - chr7_1:41198651-41198670 None:intergenic 35.0%
TGAAAATGGATCCAAAGTGA+AGG + chr7_1:41198652-41198671 Msa1019470:CDS 35.0%
GAAAATGGATCCAAAGTGAA+GGG + chr7_1:41198653-41198672 Msa1019470:CDS 35.0%
TTGGAAGTCCAAAAAGCAAT+TGG + chr7_1:41198735-41198754 Msa1019470:CDS 35.0%
TGGAAGTCCAAAAAGCAATT+GGG + chr7_1:41198736-41198755 Msa1019470:CDS 35.0%
! AGTATGGTGGAAAAGGTATA+GGG + chr7_1:41198759-41198778 Msa1019470:CDS 35.0%
!!! AAGTTTTGGTTCAATGAGAG+TGG + chr7_1:41198811-41198830 Msa1019470:CDS 35.0%
CAATGAGAGTGGAAAAAGAA+TGG + chr7_1:41198822-41198841 Msa1019470:CDS 35.0%
AAAAGAATGGAGAAGGACAT+TGG + chr7_1:41198835-41198854 Msa1019470:CDS 35.0%
TTTGAGGAAAGACACAACAA+TGG + chr7_1:41198869-41198888 Msa1019470:CDS 35.0%
TGAAGGAATGGATATGCTTT+GGG + chr7_1:41198901-41198920 Msa1019470:CDS 35.0%
! GAGTTTAGTGATGATGAGTT+AGG + chr7_1:41198998-41199017 Msa1019470:CDS 35.0%
! GTTTAGTGATGATGAGTTAG+GGG + chr7_1:41199000-41199019 Msa1019470:CDS 35.0%
!! CAAGCTTTGAAATTCTCAAC+AGG + chr7_1:41199055-41199074 Msa1019470:CDS 35.0%
TCAACAGGGAAGATGAATTT+AGG + chr7_1:41199070-41199089 Msa1019470:CDS 35.0%
AGGGAAGATGAATTTAGGAA+TGG + chr7_1:41199075-41199094 Msa1019470:CDS 35.0%
GGGAAGATGAATTTAGGAAT+GGG + chr7_1:41199076-41199095 Msa1019470:CDS 35.0%
AGATGAATTTAGGAATGGGA+AGG + chr7_1:41199080-41199099 Msa1019470:CDS 35.0%
TTGGAGAATTTGACAAGGTT+AGG - chr7_1:41199106-41199125 None:intergenic 35.0%
!! AAGCTTTGGAGAATTTGACA+AGG - chr7_1:41199111-41199130 None:intergenic 35.0%
!! TCCAAAGCTTTGAAAGGTAT+TGG + chr7_1:41199121-41199140 Msa1019470:CDS 35.0%
TCCAATACCTTTCAAAGCTT+TGG - chr7_1:41199125-41199144 None:intergenic 35.0%
!! AAGCTTTGAAAGGTATTGGA+TGG + chr7_1:41199125-41199144 Msa1019470:CDS 35.0%
AATGGAACAAGACAGTGAAG+AGG - chr7_1:41197954-41197973 None:intergenic 40.0%
AACAAGGAGAAGAAGAGTAG+TGG - chr7_1:41198079-41198098 None:intergenic 40.0%
CCCTTATGATGAACAAGGTT+TGG - chr7_1:41198120-41198139 None:intergenic 40.0%
GTCTCTATTACCCTTCACTT+TGG - chr7_1:41198666-41198685 None:intergenic 40.0%
!! CCATACTCCCAATTGCTTTT+TGG - chr7_1:41198746-41198765 None:intergenic 40.0%
CCAAAAAGCAATTGGGAGTA+TGG + chr7_1:41198743-41198762 Msa1019470:CDS 40.0%
! AAAAGCAATTGGGAGTATGG+TGG + chr7_1:41198746-41198765 Msa1019470:CDS 40.0%
! AATTGGGAGTATGGTGGAAA+AGG + chr7_1:41198752-41198771 Msa1019470:CDS 40.0%
! GAGTATGGTGGAAAAGGTAT+AGG + chr7_1:41198758-41198777 Msa1019470:CDS 40.0%
GAGTGGAAAAAGAATGGAGA+AGG + chr7_1:41198828-41198847 Msa1019470:CDS 40.0%
!!! ATTGGCTTGCAAGCTTTTTG+AGG + chr7_1:41198853-41198872 Msa1019470:CDS 40.0%
GAAAGACACAACAATGGTGA+TGG + chr7_1:41198875-41198894 Msa1019470:CDS 40.0%
!! AACAATGGTGATGGAAGTGA+AGG + chr7_1:41198884-41198903 Msa1019470:CDS 40.0%
GTGAAGGAATGGATATGCTT+TGG + chr7_1:41198900-41198919 Msa1019470:CDS 40.0%
ATTGGATGGTTGCATCATGT+AGG + chr7_1:41199139-41199158 Msa1019470:CDS 40.0%
TTGCATCATGTAGGCAAGAA+TGG + chr7_1:41199148-41199167 Msa1019470:CDS 40.0%
AATGGAACAAGACAGTGAAG+AGG - chr7_1:41197954-41197973 None:intergenic 40.0%
AACAAGGAGAAGAAGAGTAG+TGG - chr7_1:41198079-41198098 None:intergenic 40.0%
CCCTTATGATGAACAAGGTT+TGG - chr7_1:41198120-41198139 None:intergenic 40.0%
GTCTCTATTACCCTTCACTT+TGG - chr7_1:41198666-41198685 None:intergenic 40.0%
!! CCATACTCCCAATTGCTTTT+TGG - chr7_1:41198746-41198765 None:intergenic 40.0%
CCAAAAAGCAATTGGGAGTA+TGG + chr7_1:41198743-41198762 Msa1019470:CDS 40.0%
! AAAAGCAATTGGGAGTATGG+TGG + chr7_1:41198746-41198765 Msa1019470:CDS 40.0%
! AATTGGGAGTATGGTGGAAA+AGG + chr7_1:41198752-41198771 Msa1019470:CDS 40.0%
! GAGTATGGTGGAAAAGGTAT+AGG + chr7_1:41198758-41198777 Msa1019470:CDS 40.0%
GAGTGGAAAAAGAATGGAGA+AGG + chr7_1:41198828-41198847 Msa1019470:CDS 40.0%
!!! ATTGGCTTGCAAGCTTTTTG+AGG + chr7_1:41198853-41198872 Msa1019470:CDS 40.0%
GAAAGACACAACAATGGTGA+TGG + chr7_1:41198875-41198894 Msa1019470:CDS 40.0%
!! AACAATGGTGATGGAAGTGA+AGG + chr7_1:41198884-41198903 Msa1019470:CDS 40.0%
GTGAAGGAATGGATATGCTT+TGG + chr7_1:41198900-41198919 Msa1019470:CDS 40.0%
ATTGGATGGTTGCATCATGT+AGG + chr7_1:41199139-41199158 Msa1019470:CDS 40.0%
TTGCATCATGTAGGCAAGAA+TGG + chr7_1:41199148-41199167 Msa1019470:CDS 40.0%
!! TGGTGATGGAAGTGAAGGAA+TGG + chr7_1:41198889-41198908 Msa1019470:CDS 45.0%
! TGATGATGAGTTAGGGGAAG+AGG + chr7_1:41199006-41199025 Msa1019470:CDS 45.0%
!! TGGTGATGGAAGTGAAGGAA+TGG + chr7_1:41198889-41198908 Msa1019470:CDS 45.0%
! TGATGATGAGTTAGGGGAAG+AGG + chr7_1:41199006-41199025 Msa1019470:CDS 45.0%
TGATGAGTTAGGGGAAGAGG+AGG + chr7_1:41199009-41199028 Msa1019470:CDS 50.0%
TGATGAGTTAGGGGAAGAGG+AGG + chr7_1:41199009-41199028 Msa1019470:CDS 50.0%
GAGTTAGGGGAAGAGGAGGT+AGG + chr7_1:41199013-41199032 Msa1019470:CDS 55.0%
GAGTTAGGGGAAGAGGAGGT+AGG + chr7_1:41199013-41199032 Msa1019470:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 41197895 41199189 41197895 ID=Msa1019470;Name=Msa1019470
chr7_1 mRNA 41197895 41199189 41197895 ID=Msa1019470-mRNA-1;Parent=Msa1019470;Name=Msa1019470-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|404
chr7_1 exon 41197895 41198261 41197895 ID=Msa1019470-mRNA-1:exon:8017;Parent=Msa1019470-mRNA-1
chr7_1 exon 41198342 41199189 41198342 ID=Msa1019470-mRNA-1:exon:8018;Parent=Msa1019470-mRNA-1
chr7_1 CDS 41197895 41198261 41197895 ID=Msa1019470-mRNA-1:cds;Parent=Msa1019470-mRNA-1
chr7_1 CDS 41198342 41199189 41198342 ID=Msa1019470-mRNA-1:cds;Parent=Msa1019470-mRNA-1
Gene Sequence

>Msa1019470

ATGAGTGAGTTATCTTTCTCAAATGCTTCCAACAAGAACAATGAGTTCTCTAGTAACCTCTTCACTGTCTTGTTCCATTTATGTTTCTCCATATTTTCTCACCCTTTATATTTTTCCTATTTTCTCTTCTTTTCTCCATATATCCTTAAACTCCTATCTTTTCTTTCTCCTTTGTTCATTACCACTACTCTTCTTCTCCTTGTTGCTTTTCTTACTTTCACTCCAAACCTTGTTCATCATAAGGGTAGTAGCAAAAGTACTAGTACTAGTAGTGTTGAGAGTTATGAGTCCAAATGGTGTTTTTTTCTTTCTATTTTGCAAACTTTTCTAGCATGGTTTGAAGCTGATGATAAAGATGAGGAAATTGTTGAAGATTTTTCGGAAGAGTTTGAAGAAGTAGATGAAGAGTTTTCAGTTGAAGAAAAAGAGGTTTATTGTCAAATGGATGAAGAGAAAAAAGTGAACTTGGATGAAGAAAACAAAGTTGAGAAAGTGGAAGTAGTTGAATCCATTAAGGAAGAAAAAGTGTTAGATGTGAAGAGTTTAGTAACTTTGTTTCAAGAATATGCAGAGTTAGAAAATGTGTCTTGTGAAAAGGAAGAAAAAGAAGTAGTCAAGCCTATATTGGATACTAAATTCAATAAAGTGGAAGAAAGCAAAGAAACACTATGGTCCATTGAAAATGGATCCAAAGTGAAGGGTAATAGAGACATGTATGCAAATAAAGTGAAAGTGAAATCTCAAAGACTAAATGAAGATTTTGGAAGTCCAAAAAGCAATTGGGAGTATGGTGGAAAAGGTATAGGGAATAATGAAGAAGTTTGTTCTAATCTTGGAAGTTTTGGTTCAATGAGAGTGGAAAAAGAATGGAGAAGGACATTGGCTTGCAAGCTTTTTGAGGAAAGACACAACAATGGTGATGGAAGTGAAGGAATGGATATGCTTTGGGAGACATATGAGAAAGAATCAAACAAGGTTGTGAAGAAAAGTAACACAAAGAAAGGGAAGAAATTAAGTGAAGTTGAGTTTAGTGATGATGAGTTAGGGGAAGAGGAGGTAGGAGCTAAGTTATGTTGTTTACAAGCTTTGAAATTCTCAACAGGGAAGATGAATTTAGGAATGGGAAGGCCTAACCTTGTCAAATTCTCCAAAGCTTTGAAAGGTATTGGATGGTTGCATCATGTAGGCAAGAATGGAAAGAAGAATAACCACTAA

Protein sequence

>Msa1019470

MSELSFSNASNKNNEFSSNLFTVLFHLCFSIFSHPLYFSYFLFFSPYILKLLSFLSPLFITTTLLLLVAFLTFTPNLVHHKGSSKSTSTSSVESYESKWCFFLSILQTFLAWFEADDKDEEIVEDFSEEFEEVDEEFSVEEKEVYCQMDEEKKVNLDEENKVEKVEVVESIKEEKVLDVKSLVTLFQEYAELENVSCEKEEKEVVKPILDTKFNKVEESKETLWSIENGSKVKGNRDMYANKVKVKSQRLNEDFGSPKSNWEYGGKGIGNNEEVCSNLGSFGSMRVEKEWRRTLACKLFEERHNNGDGSEGMDMLWETYEKESNKVVKKSNTKKGKKLSEVEFSDDELGEEEVGAKLCCLQALKFSTGKMNLGMGRPNLVKFSKALKGIGWLHHVGKNGKKNNH*