Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338160 | XP_024631628.1 | 100.000 | 140 | 0 | 0 | 5 | 144 | 9 | 148 | 1.21e-96 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338160 | sp|P64956|Y2253_MYCBO | 46.400 | 125 | 66 | 1 | 7 | 130 | 3 | 127 | 8.90e-27 | 105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0227260 | Msa0338160 | 0.852208 | 5.366017e-61 | -8.615850e-47 |
| Msa0262580 | Msa0338160 | 0.957111 | 5.958802e-115 | -8.615850e-47 |
| Msa0306050 | Msa0338160 | 0.955341 | 3.794380e-113 | -8.615850e-47 |
| Msa0338160 | Msa1421290 | 0.960614 | 9.313900e-119 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338160 | MtrunA17_Chr2g0325301 | 100.000 | 140 | 0 | 0 | 5 | 144 | 9 | 148 | 1.11e-100 | 285 |
| Msa0338160 | MtrunA17_Chr6g0451421 | 58.394 | 137 | 57 | 0 | 5 | 141 | 7 | 143 | 1.20e-52 | 163 |
| Msa0338160 | MtrunA17_Chr6g0451411 | 59.559 | 136 | 55 | 0 | 6 | 141 | 176 | 311 | 3.94e-52 | 167 |
| Msa0338160 | MtrunA17_Chr2g0329701 | 51.429 | 140 | 68 | 0 | 5 | 144 | 233 | 372 | 7.22e-46 | 153 |
| Msa0338160 | MtrunA17_Chr7g0264421 | 51.825 | 137 | 66 | 0 | 5 | 141 | 203 | 339 | 1.16e-45 | 151 |
| Msa0338160 | MtrunA17_Chr6g0451441 | 46.528 | 144 | 69 | 1 | 6 | 141 | 320 | 463 | 5.76e-35 | 126 |
| Msa0338160 | MtrunA17_Chr6g0451451 | 50.000 | 82 | 41 | 0 | 60 | 141 | 1 | 82 | 6.57e-25 | 91.3 |
| Msa0338160 | MtrunA17_Chr1g0158081 | 37.190 | 121 | 74 | 1 | 9 | 129 | 1209 | 1327 | 3.03e-16 | 74.3 |
| Msa0338160 | MtrunA17_Chr3g0110591 | 36.364 | 121 | 75 | 1 | 9 | 129 | 25 | 143 | 3.44e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338160 | AT3G01410.2 | 50.000 | 136 | 68 | 0 | 6 | 141 | 154 | 289 | 3.64e-45 | 149 |
| Msa0338160 | AT3G01410.1 | 50.000 | 136 | 68 | 0 | 6 | 141 | 154 | 289 | 3.64e-45 | 149 |
| Msa0338160 | AT5G51080.3 | 53.285 | 137 | 64 | 0 | 5 | 141 | 121 | 257 | 4.74e-45 | 148 |
| Msa0338160 | AT5G51080.1 | 53.676 | 136 | 63 | 0 | 6 | 141 | 185 | 320 | 2.44e-44 | 148 |
| Msa0338160 | AT5G51080.2 | 53.676 | 136 | 63 | 0 | 6 | 141 | 185 | 320 | 2.44e-44 | 148 |
| Msa0338160 | AT1G24090.1 | 52.941 | 136 | 64 | 0 | 6 | 141 | 216 | 351 | 3.80e-41 | 140 |
Find 53 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACAAAGGTTCCTTAAATT+TGG | 0.088756 | 2_4:+58321611 | None:intergenic |
| TGAATATAATGGTCTAATTT+TGG | 0.114690 | 2_4:-58322166 | Msa0338160:CDS |
| TGCCTACTAGTTCAGCATTT+AGG | 0.223331 | 2_4:-58320797 | Msa0338160:three_prime_UTR |
| ATTGCTTAAGTGACTTAAAA+TGG | 0.233393 | 2_4:-58320686 | Msa0338160:three_prime_UTR |
| GCCTACTAGTTCAGCATTTA+GGG | 0.241265 | 2_4:-58320796 | Msa0338160:three_prime_UTR |
| TTCTATCTTCTGTCTTCATT+TGG | 0.279448 | 2_4:-58320609 | Msa0338160:three_prime_UTR |
| TACAAAGGTTCCTTAAATTT+GGG | 0.313196 | 2_4:+58321612 | None:intergenic |
| TGCAACAGTTTGAGGGTTCC+TGG | 0.323750 | 2_4:-58321646 | Msa0338160:intron |
| TGGATGCTCCATCAAATTCT+AGG | 0.329321 | 2_4:+58322379 | None:intergenic |
| AAGTCAACAACCCAAATTTA+AGG | 0.331211 | 2_4:-58321622 | Msa0338160:CDS |
| ATTTGGGTTGTTGACTTTCC+AGG | 0.336100 | 2_4:+58321628 | None:intergenic |
| AATGGTGTTGCTTTGATGTT+TGG | 0.346803 | 2_4:-58320668 | Msa0338160:three_prime_UTR |
| TCTTGTATCCTAGAATTTGA+TGG | 0.357172 | 2_4:-58322387 | Msa0338160:CDS |
| CTAGTAGGCACAACCTAAAC+AGG | 0.385949 | 2_4:+58320810 | None:intergenic |
| AATAATTCTGCTGAATATAA+TGG | 0.390357 | 2_4:-58322177 | Msa0338160:CDS |
| GCTCCTGCACCAGACCTTCC+AGG | 0.402463 | 2_4:+58322348 | None:intergenic |
| TGCGTTCTGCTGATGGGAGT+CGG | 0.407658 | 2_4:-58322320 | Msa0338160:CDS |
| CTCTCAGCTTGTTTGCAAGC+AGG | 0.424209 | 2_4:-58322091 | Msa0338160:intron |
| TTTAAGGAACCTTTGTAATG+AGG | 0.445867 | 2_4:-58321606 | Msa0338160:CDS |
| GCTGTTCTGCGTTCTGCTGA+TGG | 0.448826 | 2_4:-58322327 | Msa0338160:CDS |
| TATGTCTCTTTGTAGGTCCA+TGG | 0.454685 | 2_4:-58322228 | Msa0338160:intron |
| GGAGCATCCAGTGGAAATCC+TGG | 0.459158 | 2_4:-58322366 | Msa0338160:CDS |
| GCGTTCTGCTGATGGGAGTC+GGG | 0.465577 | 2_4:-58322319 | Msa0338160:intron |
| AGTGGAAATCCTGGAAGGTC+TGG | 0.475520 | 2_4:-58322357 | Msa0338160:CDS |
| CTGTTCTGCGTTCTGCTGAT+GGG | 0.478692 | 2_4:-58322326 | Msa0338160:CDS |
| TTGTTTGAGTGCCGAGTCCT+TGG | 0.487817 | 2_4:+58322199 | None:intergenic |
| AAAGAAGATTATGCTTATTG+TGG | 0.490141 | 2_4:-58323233 | None:intergenic |
| TCAGTGTCGAACATGTTCCT+AGG | 0.502100 | 2_4:-58321553 | Msa0338160:CDS |
| CATGAACATGCTCATATCCT+TGG | 0.505728 | 2_4:+58322124 | None:intergenic |
| CATGGCGTCAGCCAAGGACT+CGG | 0.511067 | 2_4:-58322210 | Msa0338160:CDS |
| TATGACATGGCCAACATGAC+TGG | 0.542678 | 2_4:-58320559 | Msa0338160:three_prime_UTR |
| CCCCTAAATGCTGAACTAGT+AGG | 0.549991 | 2_4:+58320795 | None:intergenic |
| CGAGTCCTTGGCTGACGCCA+TGG | 0.551131 | 2_4:+58322211 | None:intergenic |
| TAGGTCCATGGCGTCAGCCA+AGG | 0.555171 | 2_4:-58322216 | Msa0338160:CDS |
| AGACCTTCCAGGATTTCCAC+TGG | 0.556723 | 2_4:+58322359 | None:intergenic |
| GAACCTTTGTAATGAGGCTG+TGG | 0.560005 | 2_4:-58321600 | Msa0338160:CDS |
| AATCCTGGAAGGTCTGGTGC+AGG | 0.565510 | 2_4:-58322351 | Msa0338160:CDS |
| GTAGTAATATTCAACTTCGC+CGG | 0.574495 | 2_4:+58320892 | None:intergenic |
| ATGGTGAGATATACACATCA+TGG | 0.586235 | 2_4:+58320707 | None:intergenic |
| CTACTAGTTCAGCATTTAGG+GGG | 0.587673 | 2_4:-58320794 | Msa0338160:three_prime_UTR |
| CAGTGTCGAACATGTTCCTA+GGG | 0.587867 | 2_4:-58321552 | Msa0338160:intron |
| CCTACTAGTTCAGCATTTAG+GGG | 0.616242 | 2_4:-58320795 | Msa0338160:three_prime_UTR |
| GCTCCACAGCCTCATTACAA+AGG | 0.619284 | 2_4:+58321597 | None:intergenic |
| TTAACACCATCCAGTCATGT+TGG | 0.629124 | 2_4:+58320549 | None:intergenic |
| CTGAATGAAGCTAGGAACCA+AGG | 0.629738 | 2_4:-58322141 | Msa0338160:CDS |
| GAATTTGATGGAGCATCCAG+TGG | 0.630666 | 2_4:-58322375 | Msa0338160:CDS |
| TATGAGCATGTTCATGTCCG+AGG | 0.645245 | 2_4:-58322117 | Msa0338160:CDS |
| GCTGATGCTCAAGCAAATCG+CGG | 0.646058 | 2_4:-58321180 | Msa0338160:CDS |
| ACATGGCCAACATGACTGGA+TGG | 0.655888 | 2_4:-58320555 | Msa0338160:three_prime_UTR |
| CATCCAGTGGAAATCCTGGA+AGG | 0.657104 | 2_4:-58322362 | Msa0338160:CDS |
| TAATATATTGTGCTATGACA+TGG | 0.692388 | 2_4:-58320572 | Msa0338160:three_prime_UTR |
| AAACAAGCTGAGAGTCACCT+CGG | 0.700596 | 2_4:+58322100 | None:intergenic |
| GAAATTCAGAAACATTCACA+TGG | 0.721736 | 2_4:+58320629 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTAATAAAAAAAAAAAAAG+AGG | + | chr2_4:58320569-58320588 | None:intergenic | 10.0% |
| !!! | AAAAGTTTTTTATTTGTGAA+GGG | + | chr2_4:58320601-58320620 | None:intergenic | 15.0% |
| !!! | TAAAAGTTTTTTATTTGTGA+AGG | + | chr2_4:58320602-58320621 | None:intergenic | 15.0% |
| !! | AAAATTTACACTAAAAAAAG+TGG | - | chr2_4:58320660-58320679 | Msa0338160:three_prime_UTR | 15.0% |
| !!! | AATAATATTTTGTGAACAAT+CGG | + | chr2_4:58321858-58321877 | None:intergenic | 15.0% |
| !!! | ATTTACCATCATATTTTTAT+TGG | - | chr2_4:58322090-58322109 | Msa0338160:intron | 15.0% |
| !!! | TTTTTATATTTGTATTTGGA+AGG | - | chr2_4:58322783-58322802 | Msa0338160:intron | 15.0% |
| !!! | TTTTATATTTGTATTTGGAA+GGG | - | chr2_4:58322784-58322803 | Msa0338160:intron | 15.0% |
| !! | AACAAAACAAAACAAAATAT+AGG | + | chr2_4:58322830-58322849 | None:intergenic | 15.0% |
| !!! | TACTTTTTATGTATGTGTAT+GGG | - | chr2_4:58320888-58320907 | Msa0338160:exon | 20.0% |
| !!! | GAAAAATAGCATTTTTTTAG+AGG | + | chr2_4:58320967-58320986 | None:intergenic | 20.0% |
| !! | AGTTGTATGTACAATAATTA+CGG | + | chr2_4:58321180-58321199 | None:intergenic | 20.0% |
| !!! | TCATCTTAATGTATTGTTTT+GGG | - | chr2_4:58321233-58321252 | Msa0338160:intron | 20.0% |
| !! | AATAATTCTGCTGAATATAA+TGG | - | chr2_4:58321585-58321604 | Msa0338160:CDS | 20.0% |
| !!! | TGAATATAATGGTCTAATTT+TGG | - | chr2_4:58321596-58321615 | Msa0338160:CDS | 20.0% |
| !!! | GAATATAATGGTCTAATTTT+GGG | - | chr2_4:58321597-58321616 | Msa0338160:CDS | 20.0% |
| !!! | AATATAATGGTCTAATTTTG+GGG | - | chr2_4:58321598-58321617 | Msa0338160:CDS | 20.0% |
| !! | TGTTCACAAAATATTATTAC+AGG | - | chr2_4:58321860-58321879 | Msa0338160:intron | 20.0% |
| !! | ATGTTGTAATTATTACTACA+TGG | - | chr2_4:58321961-58321980 | Msa0338160:intron | 20.0% |
| !! | CAAAACCAATAAAAATATGA+TGG | + | chr2_4:58322098-58322117 | None:intergenic | 20.0% |
| !! | TTGTACACAATATTTCTTAA+TGG | + | chr2_4:58322760-58322779 | None:intergenic | 20.0% |
| !! | TTTATATTTGTATTTGGAAG+GGG | - | chr2_4:58322785-58322804 | Msa0338160:intron | 20.0% |
| !!! | TTTTTTTTTTTTTTTGCAGC+CGG | - | chr2_4:58322851-58322870 | Msa0338160:intron | 20.0% |
| !! | AAGTTATGTGTCTAAGTTTT+TGG | - | chr2_4:58320745-58320764 | Msa0338160:three_prime_UTR | 25.0% |
| !!! | CTACTTTTTATGTATGTGTA+TGG | - | chr2_4:58320887-58320906 | Msa0338160:exon | 25.0% |
| !! | ACTTTTTATGTATGTGTATG+GGG | - | chr2_4:58320889-58320908 | Msa0338160:CDS | 25.0% |
| !! | GACATTTGAAGTGTAAATTA+CGG | + | chr2_4:58321215-58321234 | None:intergenic | 25.0% |
| !! | GTCATCTTAATGTATTGTTT+TGG | - | chr2_4:58321232-58321251 | Msa0338160:intron | 25.0% |
| !! | GTTTTCATGATATAAACCTT+AGG | + | chr2_4:58321312-58321331 | None:intergenic | 25.0% |
| ! | ATAGTGCAAAAATGATTTGA+TGG | + | chr2_4:58321481-58321500 | None:intergenic | 25.0% |
| ! | ATGAGTTATAATAGACGTAA+GGG | + | chr2_4:58321703-58321722 | None:intergenic | 25.0% |
| !! | AAATCACCGTGTAATATTTT+GGG | + | chr2_4:58321938-58321957 | None:intergenic | 25.0% |
| ! | ACACTATATATCAAGCAATT+AGG | + | chr2_4:58322033-58322052 | None:intergenic | 25.0% |
| ! | TATAGTGTTCCTATAGTAAT+TGG | - | chr2_4:58322045-58322064 | Msa0338160:intron | 25.0% |
| ! | CAAATCAAACCAATTACTAT+AGG | + | chr2_4:58322057-58322076 | None:intergenic | 25.0% |
| ! | TACAAAGGTTCCTTAAATTT+GGG | + | chr2_4:58322153-58322172 | None:intergenic | 25.0% |
| ! | TTACAAAGGTTCCTTAAATT+TGG | + | chr2_4:58322154-58322173 | None:intergenic | 25.0% |
| !!! | TCATGTTTTTGTATTGTTGA+AGG | - | chr2_4:58322545-58322564 | Msa0338160:intron | 25.0% |
| !!! | CATGTTTTTGTATTGTTGAA+GGG | - | chr2_4:58322546-58322565 | Msa0338160:intron | 25.0% |
| ! | AAACATCTTTCACTTGTATT+TGG | - | chr2_4:58322717-58322736 | Msa0338160:intron | 25.0% |
| !! | CTATGTTAATTTTCCTGTTT+AGG | - | chr2_4:58322939-58322958 | Msa0338160:intron | 25.0% |
| !!! | ATTTTAAGTCACTTAAGCAA+TGG | + | chr2_4:58323077-58323096 | None:intergenic | 25.0% |
| ! | ATTGCTTAAGTGACTTAAAA+TGG | - | chr2_4:58323076-58323095 | Msa0338160:intron | 25.0% |
| ! | TAATATATTGTGCTATGACA+TGG | - | chr2_4:58323190-58323209 | Msa0338160:intron | 25.0% |
| ACTAAAAAAAGTGGTGTGTA+AGG | - | chr2_4:58320669-58320688 | Msa0338160:three_prime_UTR | 30.0% | |
| !! | TTATGTGTCTAAGTTTTTGG+TGG | - | chr2_4:58320748-58320767 | Msa0338160:three_prime_UTR | 30.0% |
| !!! | ATGCTATTTTTCCAAATGAG+TGG | - | chr2_4:58320975-58320994 | Msa0338160:intron | 30.0% |
| !!! | TAATGTATTGTTTTGGGCAT+TGG | - | chr2_4:58321239-58321258 | Msa0338160:intron | 30.0% |
| CAAAATTGATATCCTCTATC+AGG | - | chr2_4:58321276-58321295 | Msa0338160:intron | 30.0% | |
| TCATGATATAAACCTTAGGA+CGG | + | chr2_4:58321308-58321327 | None:intergenic | 30.0% | |
| TCTTGTATCCTAGAATTTGA+TGG | - | chr2_4:58321375-58321394 | Msa0338160:intron | 30.0% | |
| GATGAGTTATAATAGACGTA+AGG | + | chr2_4:58321704-58321723 | None:intergenic | 30.0% | |
| TGTTAATGCATACACTGTAA+GGG | + | chr2_4:58321759-58321778 | None:intergenic | 30.0% | |
| ATGTTAATGCATACACTGTA+AGG | + | chr2_4:58321760-58321779 | None:intergenic | 30.0% | |
| CATCACTCATTTCATTCATA+TGG | + | chr2_4:58321817-58321836 | None:intergenic | 30.0% | |
| TTGGTACCCAAAATATTACA+CGG | - | chr2_4:58321929-58321948 | Msa0338160:intron | 30.0% | |
| ! | CAAATCACCGTGTAATATTT+TGG | + | chr2_4:58321939-58321958 | None:intergenic | 30.0% |
| TATATATCAAGCAATTAGGC+AGG | + | chr2_4:58322029-58322048 | None:intergenic | 30.0% | |
| AAGTCAACAACCCAAATTTA+AGG | - | chr2_4:58322140-58322159 | Msa0338160:CDS | 30.0% | |
| TTTAAGGAACCTTTGTAATG+AGG | - | chr2_4:58322156-58322175 | Msa0338160:CDS | 30.0% | |
| ! | GTTTCTCTGGAAAACTTAAA+AGG | - | chr2_4:58322314-58322333 | Msa0338160:intron | 30.0% |
| CATAAACGATTCTCAAATGT+TGG | + | chr2_4:58322364-58322383 | None:intergenic | 30.0% | |
| ! | GTTTTTCCTGTTAAAGCATA+TGG | + | chr2_4:58322445-58322464 | None:intergenic | 30.0% |
| !!! | CAAGACTTTTGAGTTCTTAT+AGG | - | chr2_4:58322630-58322649 | Msa0338160:intron | 30.0% |
| !!! | ATGTTTTTCTAAAGCAGCTT+TGG | + | chr2_4:58322703-58322722 | None:intergenic | 30.0% |
| ! | TGATGTTTGGATTTTATGCT+TGG | - | chr2_4:58323107-58323126 | Msa0338160:intron | 30.0% |
| GAAATTCAGAAACATTCACA+TGG | + | chr2_4:58323136-58323155 | None:intergenic | 30.0% | |
| TTCTATCTTCTGTCTTCATT+TGG | - | chr2_4:58323153-58323172 | Msa0338160:intron | 30.0% | |
| !! | TAACTTTGAGATCCCAGATT+CGG | + | chr2_4:58320731-58320750 | None:intergenic | 35.0% |
| !!! | AAGTTTTTGGTGGTGTAACT+AGG | - | chr2_4:58320758-58320777 | Msa0338160:three_prime_UTR | 35.0% |
| ACACAGTATCTTATAGCTGT+AGG | - | chr2_4:58321082-58321101 | Msa0338160:intron | 35.0% | |
| CATGATATAAACCTTAGGAC+GGG | + | chr2_4:58321307-58321326 | None:intergenic | 35.0% | |
| AACCCTTTATGTCTCTTTGT+AGG | - | chr2_4:58321527-58321546 | Msa0338160:intron | 35.0% | |
| GACCTACAAAGAGACATAAA+GGG | + | chr2_4:58321532-58321551 | None:intergenic | 35.0% | |
| ! | TAAATTCCTTGTTTGCAAGC+AGG | - | chr2_4:58321727-58321746 | Msa0338160:intron | 35.0% |
| !! | GTGTAATATTTTGGGTACCA+AGG | + | chr2_4:58321930-58321949 | None:intergenic | 35.0% |
| !!! | ATTGGTTTTGCAACAGTTTG+AGG | - | chr2_4:58322108-58322127 | Msa0338160:CDS | 35.0% |
| !!! | TTGGTTTTGCAACAGTTTGA+GGG | - | chr2_4:58322109-58322128 | Msa0338160:CDS | 35.0% |
| GGTATACACTTTGTCTCATT+TGG | - | chr2_4:58322231-58322250 | Msa0338160:intron | 35.0% | |
| CTGGAAAACTTAAAAGGTTG+AGG | - | chr2_4:58322320-58322339 | Msa0338160:CDS | 35.0% | |
| ! | GAGAGGCATGCTAATTAAAA+AGG | + | chr2_4:58322405-58322424 | None:intergenic | 35.0% |
| TCACTTGTATTTGGTTGCAA+TGG | - | chr2_4:58322726-58322745 | Msa0338160:intron | 35.0% | |
| GTAGTAATATTCAACTTCGC+CGG | + | chr2_4:58322873-58322892 | None:intergenic | 35.0% | |
| ATGCCACTGTCAAAAACTAT+TGG | - | chr2_4:58322913-58322932 | Msa0338160:intron | 35.0% | |
| ! | TTGCCAATAGTTTTTGACAG+TGG | + | chr2_4:58322919-58322938 | None:intergenic | 35.0% |
| ATGGTGAGATATACACATCA+TGG | + | chr2_4:58323058-58323077 | None:intergenic | 35.0% | |
| !! | AATGGTGTTGCTTTGATGTT+TGG | - | chr2_4:58323094-58323113 | Msa0338160:intron | 35.0% |
| ! | ATGACACTTTTACCCGAATC+TGG | - | chr2_4:58320715-58320734 | Msa0338160:three_prime_UTR | 40.0% |
| ! | TGACACTTTTACCCGAATCT+GGG | - | chr2_4:58320716-58320735 | Msa0338160:three_prime_UTR | 40.0% |
| !! | AACTTTGAGATCCCAGATTC+GGG | + | chr2_4:58320730-58320749 | None:intergenic | 40.0% |
| !! | AAGAGTGTTGTCCACTCATT+TGG | + | chr2_4:58320989-58321008 | None:intergenic | 40.0% |
| TGGATGCTCCATCAAATTCT+AGG | + | chr2_4:58321386-58321405 | None:intergenic | 40.0% | |
| GGACCTACAAAGAGACATAA+AGG | + | chr2_4:58321533-58321552 | None:intergenic | 40.0% | |
| TATGTCTCTTTGTAGGTCCA+TGG | - | chr2_4:58321534-58321553 | Msa0338160:intron | 40.0% | |
| CATGAACATGCTCATATCCT+TGG | + | chr2_4:58321641-58321660 | None:intergenic | 40.0% | |
| AACTAACCTGCTTGCAAACA+AGG | + | chr2_4:58321680-58321699 | None:intergenic | 40.0% | |
| TCTGCATTAACAGCAATGCA+AGG | - | chr2_4:58321986-58322005 | Msa0338160:intron | 40.0% | |
| !! | ATTTGGGTTGTTGACTTTCC+AGG | + | chr2_4:58322137-58322156 | None:intergenic | 40.0% |
| TGAGACAAAGTGTATACCCT+AGG | + | chr2_4:58322229-58322248 | None:intergenic | 40.0% | |
| ACCTTGATTGTGTGTTTCTC+TGG | - | chr2_4:58322301-58322320 | Msa0338160:intron | 40.0% | |
| TCCAGAGAAACACACAATCA+AGG | + | chr2_4:58322305-58322324 | None:intergenic | 40.0% | |
| ! | TAGTTTTTGACAGTGGCATG+CGG | + | chr2_4:58322912-58322931 | None:intergenic | 40.0% |
| TGCCTACTAGTTCAGCATTT+AGG | - | chr2_4:58322965-58322984 | Msa0338160:intron | 40.0% | |
| GCCTACTAGTTCAGCATTTA+GGG | - | chr2_4:58322966-58322985 | Msa0338160:intron | 40.0% | |
| CCTACTAGTTCAGCATTTAG+GGG | - | chr2_4:58322967-58322986 | Msa0338160:intron | 40.0% | |
| CTACTAGTTCAGCATTTAGG+GGG | - | chr2_4:58322968-58322987 | Msa0338160:intron | 40.0% | |
| TTAACACCATCCAGTCATGT+TGG | + | chr2_4:58323216-58323235 | None:intergenic | 40.0% | |
| ! | GAATTTGATGGAGCATCCAG+TGG | - | chr2_4:58321387-58321406 | Msa0338160:intron | 45.0% |
| !!! | TTTTGGGGCTGAATGAAGCT+AGG | - | chr2_4:58321613-58321632 | Msa0338160:CDS | 45.0% |
| CTGAATGAAGCTAGGAACCA+AGG | - | chr2_4:58321621-58321640 | Msa0338160:CDS | 45.0% | |
| TATGAGCATGTTCATGTCCG+AGG | - | chr2_4:58321645-58321664 | Msa0338160:intron | 45.0% | |
| AAACAAGCTGAGAGTCACCT+CGG | + | chr2_4:58321665-58321684 | None:intergenic | 45.0% | |
| GAACCTTTGTAATGAGGCTG+TGG | - | chr2_4:58322162-58322181 | Msa0338160:CDS | 45.0% | |
| ! | TCAGTGTCGAACATGTTCCT+AGG | - | chr2_4:58322209-58322228 | Msa0338160:CDS | 45.0% |
| ! | CAGTGTCGAACATGTTCCTA+GGG | - | chr2_4:58322210-58322229 | Msa0338160:CDS | 45.0% |
| ATCGCGTGACTTATGTAGAG+AGG | + | chr2_4:58322422-58322441 | None:intergenic | 45.0% | |
| CGCGATCCATATGCTTTAAC+AGG | - | chr2_4:58322436-58322455 | Msa0338160:intron | 45.0% | |
| GCAAATCGCGGCAAAAATCT+TGG | - | chr2_4:58322594-58322613 | Msa0338160:intron | 45.0% | |
| AATCGCGGCAAAAATCTTGG+AGG | - | chr2_4:58322597-58322616 | Msa0338160:intron | 45.0% | |
| CTAGTAGGCACAACCTAAAC+AGG | + | chr2_4:58322955-58322974 | None:intergenic | 45.0% | |
| CCCCTAAATGCTGAACTAGT+AGG | + | chr2_4:58322970-58322989 | None:intergenic | 45.0% | |
| TATGACATGGCCAACATGAC+TGG | - | chr2_4:58323203-58323222 | Msa0338160:intron | 45.0% | |
| !!! | ATTTTTTTTATATTTGTATT+TGG | - | chr2_4:58322779-58322798 | Msa0338160:intron | 5.0% |
| CATCCAGTGGAAATCCTGGA+AGG | - | chr2_4:58321400-58321419 | Msa0338160:intron | 50.0% | |
| AGACCTTCCAGGATTTCCAC+TGG | + | chr2_4:58321406-58321425 | None:intergenic | 50.0% | |
| AGTGGAAATCCTGGAAGGTC+TGG | - | chr2_4:58321405-58321424 | Msa0338160:intron | 50.0% | |
| CTGTTCTGCGTTCTGCTGAT+GGG | - | chr2_4:58321436-58321455 | Msa0338160:intron | 50.0% | |
| !! | TTGTTTGAGTGCCGAGTCCT+TGG | + | chr2_4:58321566-58321585 | None:intergenic | 50.0% |
| ! | CTCTCAGCTTGTTTGCAAGC+AGG | - | chr2_4:58321671-58321690 | Msa0338160:intron | 50.0% |
| !! | GTTTTCCTATGCGTCGACCT+TGG | - | chr2_4:58321910-58321929 | Msa0338160:intron | 50.0% |
| TGCAACAGTTTGAGGGTTCC+TGG | - | chr2_4:58322116-58322135 | Msa0338160:CDS | 50.0% | |
| GCTCCACAGCCTCATTACAA+AGG | + | chr2_4:58322168-58322187 | None:intergenic | 50.0% | |
| GCTGATGCTCAAGCAAATCG+CGG | - | chr2_4:58322582-58322601 | Msa0338160:intron | 50.0% | |
| ACATGGCCAACATGACTGGA+TGG | - | chr2_4:58323207-58323226 | Msa0338160:intron | 50.0% | |
| ! | GGAGCATCCAGTGGAAATCC+TGG | - | chr2_4:58321396-58321415 | Msa0338160:intron | 55.0% |
| AATCCTGGAAGGTCTGGTGC+AGG | - | chr2_4:58321411-58321430 | Msa0338160:intron | 55.0% | |
| GCTGTTCTGCGTTCTGCTGA+TGG | - | chr2_4:58321435-58321454 | Msa0338160:intron | 55.0% | |
| TGCGTTCTGCTGATGGGAGT+CGG | - | chr2_4:58321442-58321461 | Msa0338160:intron | 55.0% | |
| ! | ATCAGGCGTTGCCCGTCCTA+AGG | - | chr2_4:58321293-58321312 | Msa0338160:intron | 60.0% |
| GCGTTCTGCTGATGGGAGTC+GGG | - | chr2_4:58321443-58321462 | Msa0338160:intron | 60.0% | |
| TAGGTCCATGGCGTCAGCCA+AGG | - | chr2_4:58321546-58321565 | Msa0338160:intron | 60.0% | |
| CATGGCGTCAGCCAAGGACT+CGG | - | chr2_4:58321552-58321571 | Msa0338160:intron | 60.0% | |
| GGGTACCAAGGTCGACGCAT+AGG | + | chr2_4:58321918-58321937 | None:intergenic | 60.0% | |
| GGACGGGCAACGCCTGATAG+AGG | + | chr2_4:58321291-58321310 | None:intergenic | 65.0% | |
| GCTCCTGCACCAGACCTTCC+AGG | + | chr2_4:58321417-58321436 | None:intergenic | 65.0% | |
| CGAGTCCTTGGCTGACGCCA+TGG | + | chr2_4:58321554-58321573 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 58320539 | 58323245 | 58320539 | ID=Msa0338160;Name=Msa0338160 |
| chr2_4 | mRNA | 58320539 | 58323245 | 58320539 | ID=Msa0338160-mRNA-1;Parent=Msa0338160;Name=Msa0338160-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.8|0.66|0.83|1|1|6|350|144 |
| chr2_4 | exon | 58320539 | 58320914 | 58320539 | ID=Msa0338160-mRNA-1:exon:17964;Parent=Msa0338160-mRNA-1 |
| chr2_4 | exon | 58321166 | 58321217 | 58321166 | ID=Msa0338160-mRNA-1:exon:17963;Parent=Msa0338160-mRNA-1 |
| chr2_4 | exon | 58321553 | 58321660 | 58321553 | ID=Msa0338160-mRNA-1:exon:17962;Parent=Msa0338160-mRNA-1 |
| chr2_4 | exon | 58322092 | 58322235 | 58322092 | ID=Msa0338160-mRNA-1:exon:17961;Parent=Msa0338160-mRNA-1 |
| chr2_4 | exon | 58322320 | 58322412 | 58322320 | ID=Msa0338160-mRNA-1:exon:17960;Parent=Msa0338160-mRNA-1 |
| chr2_4 | exon | 58323234 | 58323245 | 58323234 | ID=Msa0338160-mRNA-1:exon:17959;Parent=Msa0338160-mRNA-1 |
| chr2_4 | CDS | 58323234 | 58323245 | 58323234 | ID=Msa0338160-mRNA-1:cds;Parent=Msa0338160-mRNA-1 |
| chr2_4 | CDS | 58322320 | 58322412 | 58322320 | ID=Msa0338160-mRNA-1:cds;Parent=Msa0338160-mRNA-1 |
| chr2_4 | CDS | 58322092 | 58322235 | 58322092 | ID=Msa0338160-mRNA-1:cds;Parent=Msa0338160-mRNA-1 |
| chr2_4 | CDS | 58321553 | 58321660 | 58321553 | ID=Msa0338160-mRNA-1:cds;Parent=Msa0338160-mRNA-1 |
| chr2_4 | CDS | 58321166 | 58321217 | 58321166 | ID=Msa0338160-mRNA-1:cds;Parent=Msa0338160-mRNA-1 |
| chr2_4 | CDS | 58320889 | 58320914 | 58320889 | ID=Msa0338160-mRNA-1:cds;Parent=Msa0338160-mRNA-1 |
| chr2_4 | three_prime_UTR | 58320539 | 58320888 | 58320539 | ID=Msa0338160-mRNA-1:three_prime_utr;Parent=Msa0338160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
