Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339760 | KAE9614424.1 | 46.829 | 205 | 79 | 4 | 51 | 225 | 79 | 283 | 1.89e-47 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339760 | sp|A7SKE9|EIF3G_NEMVE | 47.273 | 110 | 54 | 2 | 118 | 224 | 184 | 292 | 3.02e-24 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077010 | Msa0339760 | 0.804407 | 2.192888e-49 | -8.615850e-47 |
| Msa0339760 | Msa0387470 | 0.945353 | 3.580021e-104 | -8.615850e-47 |
| Msa0339760 | Msa0523680 | 0.813611 | 2.344741e-51 | -8.615850e-47 |
| Msa0339760 | Msa1350440 | 0.859987 | 2.827591e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339760 | MtrunA17_Chr8g0349601 | 46.575 | 219 | 93 | 6 | 29 | 225 | 64 | 280 | 2.44e-50 | 165 |
| Msa0339760 | MtrunA17_Chr8g0393061 | 48.077 | 208 | 75 | 6 | 51 | 225 | 85 | 292 | 1.56e-49 | 164 |
| Msa0339760 | MtrunA17_Chr5g0402101 | 36.364 | 110 | 67 | 2 | 118 | 225 | 107 | 215 | 1.58e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339760 | AT3G11400.1 | 60.163 | 123 | 48 | 1 | 104 | 225 | 172 | 294 | 1.41e-44 | 151 |
| Msa0339760 | AT3G11400.2 | 60.163 | 123 | 48 | 1 | 104 | 225 | 199 | 321 | 3.50e-44 | 151 |
| Msa0339760 | AT5G06000.1 | 59.821 | 112 | 44 | 1 | 117 | 227 | 178 | 289 | 4.57e-40 | 140 |
Find 62 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACAGGTTCTATGTATCTT+AGG | 0.176986 | 2_4:+61030314 | Msa0339760:three_prime_UTR |
| TTCCCTTCATAGGTTGTTCT+TGG | 0.212669 | 2_4:-61030183 | Msa0339770:intron |
| TTCTAAATGCTAAACGATAT+TGG | 0.270250 | 2_4:-61030294 | Msa0339770:intron |
| ACCATTAGGGTTTGGGTGTT+CGG | 0.275954 | 2_4:-61028978 | None:intergenic |
| CGATATTGGAAATTGATAAA+AGG | 0.281581 | 2_4:-61030280 | Msa0339770:intron |
| TATGAGCTATTCAGTTGTTT+TGG | 0.281596 | 2_4:+61030000 | Msa0339760:CDS |
| CCATTAGGGTTTGGGTGTTC+GGG | 0.285720 | 2_4:-61028977 | None:intergenic |
| GACGATGGGTGGTTCATATC+AGG | 0.288856 | 2_4:+61029819 | Msa0339760:CDS |
| TCCCTTCATAGGTTGTTCTT+GGG | 0.309125 | 2_4:-61030182 | Msa0339770:intron |
| TCCATACGAAAAGGTCGTTT+TGG | 0.309321 | 2_4:-61029781 | None:intergenic |
| AGCTACAAATCAAATCAAAT+TGG | 0.342976 | 2_4:+61028866 | Msa0339760:CDS |
| AGAGAAGGACCATTAGGGTT+TGG | 0.347093 | 2_4:-61028986 | None:intergenic |
| AAGTCTCCCATTCCCTTCAT+AGG | 0.363517 | 2_4:-61030193 | Msa0339770:intron |
| GAGAGAGAGAAGGACCATTA+GGG | 0.366798 | 2_4:-61028991 | None:intergenic |
| CCTGCCTTGAGAGGTGGTGC+AGG | 0.367808 | 2_4:+61029886 | Msa0339760:CDS |
| GAGAAGGACCATTAGGGTTT+GGG | 0.373792 | 2_4:-61028985 | None:intergenic |
| TTTGAAGAAAACTCTAACTT+GGG | 0.381459 | 2_4:-61028812 | None:intergenic |
| TAAGAAACATCTACATGAAC+TGG | 0.390855 | 2_4:-61028926 | None:intergenic |
| TCATAGGTTGTTCTTGGGGT+GGG | 0.395702 | 2_4:-61030177 | Msa0339770:intron |
| GGTGGTGCAGGGAGGTCTGT+AGG | 0.417455 | 2_4:+61029898 | Msa0339760:CDS |
| CTACAATAATCTCATCTTGA+AGG | 0.422143 | 2_4:+61030146 | Msa0339760:CDS |
| TCTTGCTTAATTTATGTACA+TGG | 0.428508 | 2_4:-61030365 | Msa0339770:intron |
| AACAGGTTCTATGTATCTTA+GGG | 0.432554 | 2_4:+61030315 | Msa0339760:three_prime_UTR |
| CTGAATAGCTCATACAAATC+AGG | 0.437655 | 2_4:-61029991 | None:intergenic |
| CCCGAACACCCAAACCCTAA+TGG | 0.444115 | 2_4:+61028977 | Msa0339760:CDS |
| TATCGTTTAGCATTTAGAAC+AGG | 0.450763 | 2_4:+61030298 | Msa0339760:three_prime_UTR |
| TTCATAGGTTGTTCTTGGGG+TGG | 0.454699 | 2_4:-61030178 | Msa0339770:intron |
| TCAAATTGGTGAGGAAAGAA+TGG | 0.467811 | 2_4:+61028880 | Msa0339760:CDS |
| ATCTCATCTTGAAGGTTGAA+TGG | 0.477563 | 2_4:+61030154 | Msa0339760:CDS |
| ACCCCAAGAACAACCTATGA+AGG | 0.483719 | 2_4:+61030180 | Msa0339760:CDS |
| CCTCATGTTCTTCGAGAGGT+TGG | 0.484277 | 2_4:-61029965 | None:intergenic |
| GCTATGTCACCTTTGTCAGC+AGG | 0.494544 | 2_4:+61030082 | Msa0339760:CDS |
| CCCTTCATAGGTTGTTCTTG+GGG | 0.495515 | 2_4:-61030181 | Msa0339770:intron |
| AGAACAACCTATGAAGGGAA+TGG | 0.500669 | 2_4:+61030186 | Msa0339760:CDS |
| GAACAACCTATGAAGGGAAT+GGG | 0.506327 | 2_4:+61030187 | Msa0339760:CDS |
| CCTGCACCACCTCTCAAGGC+AGG | 0.512096 | 2_4:-61029886 | None:intergenic |
| CTGCCTTGAGAGGTGGTGCA+GGG | 0.512726 | 2_4:+61029887 | Msa0339760:CDS |
| GTGGTGCAGGGAGGTCTGTA+GGG | 0.520790 | 2_4:+61029899 | Msa0339760:CDS |
| TAAACAGGTTCAATAAATGA+TGG | 0.523431 | 2_4:+61029748 | Msa0339760:intron |
| GTGATGCATTCCATACGAAA+AGG | 0.547529 | 2_4:-61029790 | None:intergenic |
| CCTCCCTGCACCACCTCTCA+AGG | 0.556170 | 2_4:-61029890 | None:intergenic |
| AGCATCTTCCCTGCTGACAA+AGG | 0.563882 | 2_4:-61030091 | Msa0339770:CDS |
| TTGATAAAAGGAAAGACAGA+AGG | 0.569974 | 2_4:-61030268 | Msa0339770:intron |
| TATGTAGCTCCTGCCTTGAG+AGG | 0.579522 | 2_4:+61029877 | Msa0339760:CDS |
| GAACAATGAGATTTACGTGC+GGG | 0.586065 | 2_4:+61029939 | Msa0339760:CDS |
| GTAGCTCCTGCCTTGAGAGG+TGG | 0.590563 | 2_4:+61029880 | Msa0339760:CDS |
| CTATGTCACCTTTGTCAGCA+GGG | 0.596701 | 2_4:+61030083 | Msa0339760:CDS |
| ACGATGGGTGGTTCATATCA+GGG | 0.596881 | 2_4:+61029820 | Msa0339760:CDS |
| AGAGCTGTTAACAAACTCAA+TGG | 0.598173 | 2_4:+61030117 | Msa0339760:CDS |
| GCTCCCTCATGTTCTTCGAG+AGG | 0.602227 | 2_4:-61029969 | None:intergenic |
| TAGGGTCAGACATGAGGCAG+AGG | 0.607730 | 2_4:+61029917 | Msa0339760:CDS |
| CCTTGAGAGGTGGTGCAGGG+AGG | 0.610063 | 2_4:+61029890 | Msa0339760:CDS |
| CCCCAAGAACAACCTATGAA+GGG | 0.616746 | 2_4:+61030181 | Msa0339760:CDS |
| GGAGCTACATATACACCCCT+AGG | 0.622184 | 2_4:-61029865 | None:intergenic |
| GGTCTGTAGGGTCAGACATG+AGG | 0.626411 | 2_4:+61029911 | Msa0339760:CDS |
| CAAATCAAATCAAATTGGTG+AGG | 0.628896 | 2_4:+61028871 | Msa0339760:CDS |
| CCAACCTCTCGAAGAACATG+AGG | 0.632828 | 2_4:+61029965 | Msa0339760:CDS |
| TATACACCCCTAGGAACGAA+TGG | 0.642906 | 2_4:-61029856 | None:intergenic |
| AAAATACTGACATGTGTAGG+GGG | 0.649056 | 2_4:+61030055 | Msa0339760:CDS |
| CAACCTCTCGAAGAACATGA+GGG | 0.663029 | 2_4:+61029966 | Msa0339760:CDS |
| GGAAAGAATGGATCGACAAG+CGG | 0.664958 | 2_4:+61028892 | Msa0339760:CDS |
| GGAACAATGAGATTTACGTG+CGG | 0.721225 | 2_4:+61029938 | Msa0339760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAATCCAACAATTTTTA+GGG | - | chr2_4:61029115-61029134 | None:intergenic | 15.0% |
| !!! | AATTAAATCCAACAATTTTT+AGG | - | chr2_4:61029116-61029135 | None:intergenic | 15.0% |
| !!! | ATTAAATCCAACAATTTTTA+GGG | - | chr2_4:61029115-61029134 | None:intergenic | 15.0% |
| !!! | AATTAAATCCAACAATTTTT+AGG | - | chr2_4:61029116-61029135 | None:intergenic | 15.0% |
| !!! | GTGAAAATTTTGTTGTTTTA+GGG | - | chr2_4:61028787-61028806 | None:intergenic | 20.0% |
| !!! | TGTGAAAATTTTGTTGTTTT+AGG | - | chr2_4:61028788-61028807 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCCATTTGAATCT+AGG | + | chr2_4:61029049-61029068 | Msa0339760:intron | 20.0% |
| !! | ATAAAAAACCTAGATTCAAA+TGG | - | chr2_4:61029060-61029079 | None:intergenic | 20.0% |
| !! | ACTGTTAACTTATTTATCAT+CGG | - | chr2_4:61029593-61029612 | None:intergenic | 20.0% |
| !!! | GTGAAAATTTTGTTGTTTTA+GGG | - | chr2_4:61028787-61028806 | None:intergenic | 20.0% |
| !!! | TGTGAAAATTTTGTTGTTTT+AGG | - | chr2_4:61028788-61028807 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCCATTTGAATCT+AGG | + | chr2_4:61029049-61029068 | Msa0339760:intron | 20.0% |
| !! | ATAAAAAACCTAGATTCAAA+TGG | - | chr2_4:61029060-61029079 | None:intergenic | 20.0% |
| !! | ACTGTTAACTTATTTATCAT+CGG | - | chr2_4:61029593-61029612 | None:intergenic | 20.0% |
| ! | TTTGAAGAAAACTCTAACTT+GGG | - | chr2_4:61028815-61028834 | None:intergenic | 25.0% |
| !!! | TTTTGAAGAAAACTCTAACT+TGG | - | chr2_4:61028816-61028835 | None:intergenic | 25.0% |
| ! | AGCTACAAATCAAATCAAAT+TGG | + | chr2_4:61028866-61028885 | Msa0339760:CDS | 25.0% |
| ! | TATTGAACCCTAAAAATTGT+TGG | + | chr2_4:61029105-61029124 | Msa0339760:intron | 25.0% |
| ! | TAGATAGATAGATAGTTGTT+TGG | + | chr2_4:61029146-61029165 | Msa0339760:intron | 25.0% |
| !! | TGCATGAAATTTCTTACTTT+TGG | + | chr2_4:61029458-61029477 | Msa0339760:intron | 25.0% |
| !!! | GCATGAAATTTCTTACTTTT+GGG | + | chr2_4:61029459-61029478 | Msa0339760:intron | 25.0% |
| !!! | CATGAAATTTCTTACTTTTG+GGG | + | chr2_4:61029460-61029479 | Msa0339760:intron | 25.0% |
| !!! | ATGAAATTTCTTACTTTTGG+GGG | + | chr2_4:61029461-61029480 | Msa0339760:intron | 25.0% |
| ! | CTTCTATAACAAATCATATG+TGG | + | chr2_4:61029624-61029643 | Msa0339760:intron | 25.0% |
| ! | GAGTTATCATGATATTGAAA+GGG | - | chr2_4:61029710-61029729 | None:intergenic | 25.0% |
| ! | AGAGTTATCATGATATTGAA+AGG | - | chr2_4:61029711-61029730 | None:intergenic | 25.0% |
| ! | TAAACAGGTTCAATAAATGA+TGG | + | chr2_4:61029748-61029767 | Msa0339760:intron | 25.0% |
| ! | ATAAAAATACTGACATGTGT+AGG | + | chr2_4:61030052-61030071 | Msa0339760:CDS | 25.0% |
| ! | TAAAAATACTGACATGTGTA+GGG | + | chr2_4:61030053-61030072 | Msa0339760:CDS | 25.0% |
| ! | CGATATTGGAAATTGATAAA+AGG | - | chr2_4:61030283-61030302 | Msa0339770:intron | 25.0% |
| ! | TTCTAAATGCTAAACGATAT+TGG | - | chr2_4:61030297-61030316 | Msa0339770:intron | 25.0% |
| ! | TCTTGCTTAATTTATGTACA+TGG | - | chr2_4:61030368-61030387 | Msa0339770:intron | 25.0% |
| ! | TTTGAAGAAAACTCTAACTT+GGG | - | chr2_4:61028815-61028834 | None:intergenic | 25.0% |
| !!! | TTTTGAAGAAAACTCTAACT+TGG | - | chr2_4:61028816-61028835 | None:intergenic | 25.0% |
| ! | AGCTACAAATCAAATCAAAT+TGG | + | chr2_4:61028866-61028885 | Msa0339760:CDS | 25.0% |
| ! | TATTGAACCCTAAAAATTGT+TGG | + | chr2_4:61029105-61029124 | Msa0339760:intron | 25.0% |
| ! | TAGATAGATAGATAGTTGTT+TGG | + | chr2_4:61029146-61029165 | Msa0339760:intron | 25.0% |
| !! | TGCATGAAATTTCTTACTTT+TGG | + | chr2_4:61029458-61029477 | Msa0339760:intron | 25.0% |
| !!! | GCATGAAATTTCTTACTTTT+GGG | + | chr2_4:61029459-61029478 | Msa0339760:intron | 25.0% |
| !!! | CATGAAATTTCTTACTTTTG+GGG | + | chr2_4:61029460-61029479 | Msa0339760:intron | 25.0% |
| !!! | ATGAAATTTCTTACTTTTGG+GGG | + | chr2_4:61029461-61029480 | Msa0339760:intron | 25.0% |
| ! | CTTCTATAACAAATCATATG+TGG | + | chr2_4:61029624-61029643 | Msa0339760:intron | 25.0% |
| ! | GAGTTATCATGATATTGAAA+GGG | - | chr2_4:61029710-61029729 | None:intergenic | 25.0% |
| ! | AGAGTTATCATGATATTGAA+AGG | - | chr2_4:61029711-61029730 | None:intergenic | 25.0% |
| ! | TAAACAGGTTCAATAAATGA+TGG | + | chr2_4:61029748-61029767 | Msa0339760:intron | 25.0% |
| ! | ATAAAAATACTGACATGTGT+AGG | + | chr2_4:61030052-61030071 | Msa0339760:CDS | 25.0% |
| ! | TAAAAATACTGACATGTGTA+GGG | + | chr2_4:61030053-61030072 | Msa0339760:CDS | 25.0% |
| ! | CGATATTGGAAATTGATAAA+AGG | - | chr2_4:61030283-61030302 | Msa0339770:intron | 25.0% |
| ! | TTCTAAATGCTAAACGATAT+TGG | - | chr2_4:61030297-61030316 | Msa0339770:intron | 25.0% |
| ! | TCTTGCTTAATTTATGTACA+TGG | - | chr2_4:61030368-61030387 | Msa0339770:intron | 25.0% |
| CAAATCAAATCAAATTGGTG+AGG | + | chr2_4:61028871-61028890 | Msa0339760:CDS | 30.0% | |
| TAAGAAACATCTACATGAAC+TGG | - | chr2_4:61028929-61028948 | None:intergenic | 30.0% | |
| ! | ACCTTGCACAATTTTATACT+TGG | + | chr2_4:61029276-61029295 | Msa0339760:intron | 30.0% |
| ! | CCTTGCACAATTTTATACTT+GGG | + | chr2_4:61029277-61029296 | Msa0339760:intron | 30.0% |
| TTGCAACACACAATATTGAT+TGG | + | chr2_4:61029362-61029381 | Msa0339760:intron | 30.0% | |
| ! | ACACACAATATTGATTGGAT+TGG | + | chr2_4:61029367-61029386 | Msa0339760:intron | 30.0% |
| !!! | TAGGAACGAATGGTTTTTTT+GGG | - | chr2_4:61029849-61029868 | None:intergenic | 30.0% |
| AAAAAAACCATTCGTTCCTA+GGG | + | chr2_4:61029849-61029868 | Msa0339760:CDS | 30.0% | |
| ! | TATGAGCTATTCAGTTGTTT+TGG | + | chr2_4:61030000-61030019 | Msa0339760:CDS | 30.0% |
| AAAAATACTGACATGTGTAG+GGG | + | chr2_4:61030054-61030073 | Msa0339760:CDS | 30.0% | |
| CTACAATAATCTCATCTTGA+AGG | + | chr2_4:61030146-61030165 | Msa0339760:CDS | 30.0% | |
| TTGATAAAAGGAAAGACAGA+AGG | - | chr2_4:61030271-61030290 | Msa0339770:intron | 30.0% | |
| ! | TATCGTTTAGCATTTAGAAC+AGG | + | chr2_4:61030298-61030317 | Msa0339760:three_prime_UTR | 30.0% |
| AACAGGTTCTATGTATCTTA+GGG | + | chr2_4:61030315-61030334 | Msa0339760:three_prime_UTR | 30.0% | |
| CAAATCAAATCAAATTGGTG+AGG | + | chr2_4:61028871-61028890 | Msa0339760:CDS | 30.0% | |
| TAAGAAACATCTACATGAAC+TGG | - | chr2_4:61028929-61028948 | None:intergenic | 30.0% | |
| ! | ACCTTGCACAATTTTATACT+TGG | + | chr2_4:61029276-61029295 | Msa0339760:intron | 30.0% |
| ! | CCTTGCACAATTTTATACTT+GGG | + | chr2_4:61029277-61029296 | Msa0339760:intron | 30.0% |
| TTGCAACACACAATATTGAT+TGG | + | chr2_4:61029362-61029381 | Msa0339760:intron | 30.0% | |
| ! | ACACACAATATTGATTGGAT+TGG | + | chr2_4:61029367-61029386 | Msa0339760:intron | 30.0% |
| !!! | TAGGAACGAATGGTTTTTTT+GGG | - | chr2_4:61029849-61029868 | None:intergenic | 30.0% |
| AAAAAAACCATTCGTTCCTA+GGG | + | chr2_4:61029849-61029868 | Msa0339760:CDS | 30.0% | |
| ! | TATGAGCTATTCAGTTGTTT+TGG | + | chr2_4:61030000-61030019 | Msa0339760:CDS | 30.0% |
| AAAAATACTGACATGTGTAG+GGG | + | chr2_4:61030054-61030073 | Msa0339760:CDS | 30.0% | |
| CTACAATAATCTCATCTTGA+AGG | + | chr2_4:61030146-61030165 | Msa0339760:CDS | 30.0% | |
| TTGATAAAAGGAAAGACAGA+AGG | - | chr2_4:61030271-61030290 | Msa0339770:intron | 30.0% | |
| ! | TATCGTTTAGCATTTAGAAC+AGG | + | chr2_4:61030298-61030317 | Msa0339760:three_prime_UTR | 30.0% |
| AACAGGTTCTATGTATCTTA+GGG | + | chr2_4:61030315-61030334 | Msa0339760:three_prime_UTR | 30.0% | |
| TCAAATTGGTGAGGAAAGAA+TGG | + | chr2_4:61028880-61028899 | Msa0339760:CDS | 35.0% | |
| ! | ATAGTGTAGCTTACTAGCTT+TGG | - | chr2_4:61029181-61029200 | None:intergenic | 35.0% |
| TGCAAACAAATCACAATGCT+TGG | + | chr2_4:61029214-61029233 | Msa0339760:intron | 35.0% | |
| CCCAAGTATAAAATTGTGCA+AGG | - | chr2_4:61029280-61029299 | None:intergenic | 35.0% | |
| ATCTTGCTGCTATTGTAAAC+AGG | + | chr2_4:61029733-61029752 | Msa0339760:intron | 35.0% | |
| !!! | CTAGGAACGAATGGTTTTTT+TGG | - | chr2_4:61029850-61029869 | None:intergenic | 35.0% |
| CAAAAAAACCATTCGTTCCT+AGG | + | chr2_4:61029848-61029867 | Msa0339760:CDS | 35.0% | |
| AAAAAACCATTCGTTCCTAG+GGG | + | chr2_4:61029850-61029869 | Msa0339760:CDS | 35.0% | |
| CTGAATAGCTCATACAAATC+AGG | - | chr2_4:61029994-61030013 | None:intergenic | 35.0% | |
| AAAATACTGACATGTGTAGG+GGG | + | chr2_4:61030055-61030074 | Msa0339760:CDS | 35.0% | |
| AGAGCTGTTAACAAACTCAA+TGG | + | chr2_4:61030117-61030136 | Msa0339760:CDS | 35.0% | |
| ATCTCATCTTGAAGGTTGAA+TGG | + | chr2_4:61030154-61030173 | Msa0339760:CDS | 35.0% | |
| GAACAGGTTCTATGTATCTT+AGG | + | chr2_4:61030314-61030333 | Msa0339760:three_prime_UTR | 35.0% | |
| TCAAATTGGTGAGGAAAGAA+TGG | + | chr2_4:61028880-61028899 | Msa0339760:CDS | 35.0% | |
| ! | ATAGTGTAGCTTACTAGCTT+TGG | - | chr2_4:61029181-61029200 | None:intergenic | 35.0% |
| TGCAAACAAATCACAATGCT+TGG | + | chr2_4:61029214-61029233 | Msa0339760:intron | 35.0% | |
| CCCAAGTATAAAATTGTGCA+AGG | - | chr2_4:61029280-61029299 | None:intergenic | 35.0% | |
| ATCTTGCTGCTATTGTAAAC+AGG | + | chr2_4:61029733-61029752 | Msa0339760:intron | 35.0% | |
| !!! | CTAGGAACGAATGGTTTTTT+TGG | - | chr2_4:61029850-61029869 | None:intergenic | 35.0% |
| CAAAAAAACCATTCGTTCCT+AGG | + | chr2_4:61029848-61029867 | Msa0339760:CDS | 35.0% | |
| AAAAAACCATTCGTTCCTAG+GGG | + | chr2_4:61029850-61029869 | Msa0339760:CDS | 35.0% | |
| CTGAATAGCTCATACAAATC+AGG | - | chr2_4:61029994-61030013 | None:intergenic | 35.0% | |
| AAAATACTGACATGTGTAGG+GGG | + | chr2_4:61030055-61030074 | Msa0339760:CDS | 35.0% | |
| AGAGCTGTTAACAAACTCAA+TGG | + | chr2_4:61030117-61030136 | Msa0339760:CDS | 35.0% | |
| ATCTCATCTTGAAGGTTGAA+TGG | + | chr2_4:61030154-61030173 | Msa0339760:CDS | 35.0% | |
| GAACAGGTTCTATGTATCTT+AGG | + | chr2_4:61030314-61030333 | Msa0339760:three_prime_UTR | 35.0% | |
| ! | TCCAAAACGACCTTTTCGTA+TGG | + | chr2_4:61029780-61029799 | Msa0339760:CDS | 40.0% |
| ! | TCCATACGAAAAGGTCGTTT+TGG | - | chr2_4:61029784-61029803 | None:intergenic | 40.0% |
| GTGATGCATTCCATACGAAA+AGG | - | chr2_4:61029793-61029812 | None:intergenic | 40.0% | |
| !!! | ATGCATCACTTTTGAGACGA+TGG | + | chr2_4:61029804-61029823 | Msa0339760:CDS | 40.0% |
| !!! | TGCATCACTTTTGAGACGAT+GGG | + | chr2_4:61029805-61029824 | Msa0339760:CDS | 40.0% |
| GGAACAATGAGATTTACGTG+CGG | + | chr2_4:61029938-61029957 | Msa0339760:CDS | 40.0% | |
| GAACAATGAGATTTACGTGC+GGG | + | chr2_4:61029939-61029958 | Msa0339760:CDS | 40.0% | |
| TCCCTTCATAGGTTGTTCTT+GGG | - | chr2_4:61030185-61030204 | Msa0339770:intron | 40.0% | |
| TTCCCTTCATAGGTTGTTCT+TGG | - | chr2_4:61030186-61030205 | Msa0339770:intron | 40.0% | |
| AGAACAACCTATGAAGGGAA+TGG | + | chr2_4:61030186-61030205 | Msa0339760:CDS | 40.0% | |
| GAACAACCTATGAAGGGAAT+GGG | + | chr2_4:61030187-61030206 | Msa0339760:CDS | 40.0% | |
| ! | TCCAAAACGACCTTTTCGTA+TGG | + | chr2_4:61029780-61029799 | Msa0339760:CDS | 40.0% |
| ! | TCCATACGAAAAGGTCGTTT+TGG | - | chr2_4:61029784-61029803 | None:intergenic | 40.0% |
| GTGATGCATTCCATACGAAA+AGG | - | chr2_4:61029793-61029812 | None:intergenic | 40.0% | |
| !!! | ATGCATCACTTTTGAGACGA+TGG | + | chr2_4:61029804-61029823 | Msa0339760:CDS | 40.0% |
| !!! | TGCATCACTTTTGAGACGAT+GGG | + | chr2_4:61029805-61029824 | Msa0339760:CDS | 40.0% |
| GGAACAATGAGATTTACGTG+CGG | + | chr2_4:61029938-61029957 | Msa0339760:CDS | 40.0% | |
| GAACAATGAGATTTACGTGC+GGG | + | chr2_4:61029939-61029958 | Msa0339760:CDS | 40.0% | |
| TCCCTTCATAGGTTGTTCTT+GGG | - | chr2_4:61030185-61030204 | Msa0339770:intron | 40.0% | |
| TTCCCTTCATAGGTTGTTCT+TGG | - | chr2_4:61030186-61030205 | Msa0339770:intron | 40.0% | |
| AGAACAACCTATGAAGGGAA+TGG | + | chr2_4:61030186-61030205 | Msa0339760:CDS | 40.0% | |
| GAACAACCTATGAAGGGAAT+GGG | + | chr2_4:61030187-61030206 | Msa0339760:CDS | 40.0% | |
| GGAAAGAATGGATCGACAAG+CGG | + | chr2_4:61028892-61028911 | Msa0339760:CDS | 45.0% | |
| ACCATTAGGGTTTGGGTGTT+CGG | - | chr2_4:61028981-61029000 | None:intergenic | 45.0% | |
| GAGAAGGACCATTAGGGTTT+GGG | - | chr2_4:61028988-61029007 | None:intergenic | 45.0% | |
| AGAGAAGGACCATTAGGGTT+TGG | - | chr2_4:61028989-61029008 | None:intergenic | 45.0% | |
| GAGAGAGAGAAGGACCATTA+GGG | - | chr2_4:61028994-61029013 | None:intergenic | 45.0% | |
| AGAGAGAGAGAAGGACCATT+AGG | - | chr2_4:61028995-61029014 | None:intergenic | 45.0% | |
| !!! | ATCACTTTTGAGACGATGGG+TGG | + | chr2_4:61029808-61029827 | Msa0339760:CDS | 45.0% |
| ACGATGGGTGGTTCATATCA+GGG | + | chr2_4:61029820-61029839 | Msa0339760:CDS | 45.0% | |
| TATACACCCCTAGGAACGAA+TGG | - | chr2_4:61029859-61029878 | None:intergenic | 45.0% | |
| CAACCTCTCGAAGAACATGA+GGG | + | chr2_4:61029966-61029985 | Msa0339760:CDS | 45.0% | |
| CTATGTCACCTTTGTCAGCA+GGG | + | chr2_4:61030083-61030102 | Msa0339760:CDS | 45.0% | |
| TCATAGGTTGTTCTTGGGGT+GGG | - | chr2_4:61030180-61030199 | Msa0339770:intron | 45.0% | |
| TTCATAGGTTGTTCTTGGGG+TGG | - | chr2_4:61030181-61030200 | Msa0339770:intron | 45.0% | |
| ACCCCAAGAACAACCTATGA+AGG | + | chr2_4:61030180-61030199 | Msa0339760:CDS | 45.0% | |
| CCCTTCATAGGTTGTTCTTG+GGG | - | chr2_4:61030184-61030203 | Msa0339770:intron | 45.0% | |
| CCCCAAGAACAACCTATGAA+GGG | + | chr2_4:61030181-61030200 | Msa0339760:CDS | 45.0% | |
| AAGTCTCCCATTCCCTTCAT+AGG | - | chr2_4:61030196-61030215 | Msa0339770:intron | 45.0% | |
| GGAAAGAATGGATCGACAAG+CGG | + | chr2_4:61028892-61028911 | Msa0339760:CDS | 45.0% | |
| ACCATTAGGGTTTGGGTGTT+CGG | - | chr2_4:61028981-61029000 | None:intergenic | 45.0% | |
| GAGAAGGACCATTAGGGTTT+GGG | - | chr2_4:61028988-61029007 | None:intergenic | 45.0% | |
| AGAGAAGGACCATTAGGGTT+TGG | - | chr2_4:61028989-61029008 | None:intergenic | 45.0% | |
| GAGAGAGAGAAGGACCATTA+GGG | - | chr2_4:61028994-61029013 | None:intergenic | 45.0% | |
| AGAGAGAGAGAAGGACCATT+AGG | - | chr2_4:61028995-61029014 | None:intergenic | 45.0% | |
| !!! | ATCACTTTTGAGACGATGGG+TGG | + | chr2_4:61029808-61029827 | Msa0339760:CDS | 45.0% |
| ACGATGGGTGGTTCATATCA+GGG | + | chr2_4:61029820-61029839 | Msa0339760:CDS | 45.0% | |
| TATACACCCCTAGGAACGAA+TGG | - | chr2_4:61029859-61029878 | None:intergenic | 45.0% | |
| CAACCTCTCGAAGAACATGA+GGG | + | chr2_4:61029966-61029985 | Msa0339760:CDS | 45.0% | |
| CTATGTCACCTTTGTCAGCA+GGG | + | chr2_4:61030083-61030102 | Msa0339760:CDS | 45.0% | |
| TCATAGGTTGTTCTTGGGGT+GGG | - | chr2_4:61030180-61030199 | Msa0339770:intron | 45.0% | |
| TTCATAGGTTGTTCTTGGGG+TGG | - | chr2_4:61030181-61030200 | Msa0339770:intron | 45.0% | |
| ACCCCAAGAACAACCTATGA+AGG | + | chr2_4:61030180-61030199 | Msa0339760:CDS | 45.0% | |
| CCCTTCATAGGTTGTTCTTG+GGG | - | chr2_4:61030184-61030203 | Msa0339770:intron | 45.0% | |
| CCCCAAGAACAACCTATGAA+GGG | + | chr2_4:61030181-61030200 | Msa0339760:CDS | 45.0% | |
| AAGTCTCCCATTCCCTTCAT+AGG | - | chr2_4:61030196-61030215 | Msa0339770:intron | 45.0% | |
| CCATTAGGGTTTGGGTGTTC+GGG | - | chr2_4:61028980-61028999 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+AGG | - | chr2_4:61029004-61029023 | None:intergenic | 50.0% | |
| GACGATGGGTGGTTCATATC+AGG | + | chr2_4:61029819-61029838 | Msa0339760:CDS | 50.0% | |
| GGAGCTACATATACACCCCT+AGG | - | chr2_4:61029868-61029887 | None:intergenic | 50.0% | |
| TATGTAGCTCCTGCCTTGAG+AGG | + | chr2_4:61029877-61029896 | Msa0339760:CDS | 50.0% | |
| CCTCATGTTCTTCGAGAGGT+TGG | - | chr2_4:61029968-61029987 | None:intergenic | 50.0% | |
| CCAACCTCTCGAAGAACATG+AGG | + | chr2_4:61029965-61029984 | Msa0339760:CDS | 50.0% | |
| GCTATGTCACCTTTGTCAGC+AGG | + | chr2_4:61030082-61030101 | Msa0339760:CDS | 50.0% | |
| AGCATCTTCCCTGCTGACAA+AGG | - | chr2_4:61030094-61030113 | Msa0339770:CDS | 50.0% | |
| CCATTAGGGTTTGGGTGTTC+GGG | - | chr2_4:61028980-61028999 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+AGG | - | chr2_4:61029004-61029023 | None:intergenic | 50.0% | |
| GACGATGGGTGGTTCATATC+AGG | + | chr2_4:61029819-61029838 | Msa0339760:CDS | 50.0% | |
| GGAGCTACATATACACCCCT+AGG | - | chr2_4:61029868-61029887 | None:intergenic | 50.0% | |
| TATGTAGCTCCTGCCTTGAG+AGG | + | chr2_4:61029877-61029896 | Msa0339760:CDS | 50.0% | |
| CCTCATGTTCTTCGAGAGGT+TGG | - | chr2_4:61029968-61029987 | None:intergenic | 50.0% | |
| CCAACCTCTCGAAGAACATG+AGG | + | chr2_4:61029965-61029984 | Msa0339760:CDS | 50.0% | |
| GCTATGTCACCTTTGTCAGC+AGG | + | chr2_4:61030082-61030101 | Msa0339760:CDS | 50.0% | |
| AGCATCTTCCCTGCTGACAA+AGG | - | chr2_4:61030094-61030113 | Msa0339770:CDS | 50.0% | |
| CCCGAACACCCAAACCCTAA+TGG | + | chr2_4:61028977-61028996 | Msa0339760:CDS | 55.0% | |
| GGTCTGTAGGGTCAGACATG+AGG | + | chr2_4:61029911-61029930 | Msa0339760:CDS | 55.0% | |
| TAGGGTCAGACATGAGGCAG+AGG | + | chr2_4:61029917-61029936 | Msa0339760:CDS | 55.0% | |
| GCTCCCTCATGTTCTTCGAG+AGG | - | chr2_4:61029972-61029991 | None:intergenic | 55.0% | |
| ACTGACATGTGTAGGGGGTG+TGG | + | chr2_4:61030060-61030079 | Msa0339760:CDS | 55.0% | |
| CCCGAACACCCAAACCCTAA+TGG | + | chr2_4:61028977-61028996 | Msa0339760:CDS | 55.0% | |
| GGTCTGTAGGGTCAGACATG+AGG | + | chr2_4:61029911-61029930 | Msa0339760:CDS | 55.0% | |
| TAGGGTCAGACATGAGGCAG+AGG | + | chr2_4:61029917-61029936 | Msa0339760:CDS | 55.0% | |
| GCTCCCTCATGTTCTTCGAG+AGG | - | chr2_4:61029972-61029991 | None:intergenic | 55.0% | |
| ACTGACATGTGTAGGGGGTG+TGG | + | chr2_4:61030060-61030079 | Msa0339760:CDS | 55.0% | |
| GTAGCTCCTGCCTTGAGAGG+TGG | + | chr2_4:61029880-61029899 | Msa0339760:CDS | 60.0% | |
| CTGCCTTGAGAGGTGGTGCA+GGG | + | chr2_4:61029887-61029906 | Msa0339760:CDS | 60.0% | |
| GTGGTGCAGGGAGGTCTGTA+GGG | + | chr2_4:61029899-61029918 | Msa0339760:CDS | 60.0% | |
| GTAGCTCCTGCCTTGAGAGG+TGG | + | chr2_4:61029880-61029899 | Msa0339760:CDS | 60.0% | |
| CTGCCTTGAGAGGTGGTGCA+GGG | + | chr2_4:61029887-61029906 | Msa0339760:CDS | 60.0% | |
| GTGGTGCAGGGAGGTCTGTA+GGG | + | chr2_4:61029899-61029918 | Msa0339760:CDS | 60.0% | |
| CCTGCACCACCTCTCAAGGC+AGG | - | chr2_4:61029889-61029908 | None:intergenic | 65.0% | |
| CCTGCCTTGAGAGGTGGTGC+AGG | + | chr2_4:61029886-61029905 | Msa0339760:CDS | 65.0% | |
| CCTCCCTGCACCACCTCTCA+AGG | - | chr2_4:61029893-61029912 | None:intergenic | 65.0% | |
| CCTTGAGAGGTGGTGCAGGG+AGG | + | chr2_4:61029890-61029909 | Msa0339760:CDS | 65.0% | |
| GGTGGTGCAGGGAGGTCTGT+AGG | + | chr2_4:61029898-61029917 | Msa0339760:CDS | 65.0% | |
| CCTGCACCACCTCTCAAGGC+AGG | - | chr2_4:61029889-61029908 | None:intergenic | 65.0% | |
| CCTGCCTTGAGAGGTGGTGC+AGG | + | chr2_4:61029886-61029905 | Msa0339760:CDS | 65.0% | |
| CCTCCCTGCACCACCTCTCA+AGG | - | chr2_4:61029893-61029912 | None:intergenic | 65.0% | |
| CCTTGAGAGGTGGTGCAGGG+AGG | + | chr2_4:61029890-61029909 | Msa0339760:CDS | 65.0% | |
| GGTGGTGCAGGGAGGTCTGT+AGG | + | chr2_4:61029898-61029917 | Msa0339760:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 61028764 | 61030409 | 61028764 | ID=Msa0339760;Name=Msa0339760 |
| chr2_4 | mRNA | 61028764 | 61030409 | 61028764 | ID=Msa0339760-mRNA-1;Parent=Msa0339760;Name=Msa0339760-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|1|1|1|1|2|188|233 |
| chr2_4 | exon | 61028764 | 61028998 | 61028764 | ID=Msa0339760-mRNA-1:exon:19023;Parent=Msa0339760-mRNA-1 |
| chr2_4 | exon | 61029755 | 61030409 | 61029755 | ID=Msa0339760-mRNA-1:exon:19024;Parent=Msa0339760-mRNA-1 |
| chr2_4 | CDS | 61028764 | 61028998 | 61028764 | ID=Msa0339760-mRNA-1:cds;Parent=Msa0339760-mRNA-1 |
| chr2_4 | CDS | 61029755 | 61030221 | 61029755 | ID=Msa0339760-mRNA-1:cds;Parent=Msa0339760-mRNA-1 |
| chr2_4 | three_prime_UTR | 61030222 | 61030409 | 61030222 | ID=Msa0339760-mRNA-1:three_prime_utr;Parent=Msa0339760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
