Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1350440 | KAE9614424.1 | 46.829 | 205 | 79 | 4 | 51 | 225 | 79 | 283 | 2.19e-47 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1350440 | sp|A7SKE9|EIF3G_NEMVE | 47.273 | 110 | 54 | 2 | 118 | 224 | 184 | 292 | 3.12e-24 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1350440 | A0A6A5MI36 | 46.829 | 205 | 79 | 4 | 51 | 225 | 79 | 283 | 1.05e-47 | 168 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033880 | Msa1350440 | 0.824880 | 6.349036e-54 | -8.615850e-47 |
| Msa0706390 | Msa1350440 | 0.818988 | 1.470295e-52 | -8.615850e-47 |
| Msa0781270 | Msa1350440 | 0.810111 | 1.355591e-50 | -8.615850e-47 |
| Msa0838370 | Msa1350440 | 0.804404 | 2.195200e-49 | -8.615850e-47 |
| Msa0127850 | Msa1350440 | 0.817469 | 3.244565e-52 | -8.615850e-47 |
| Msa0174000 | Msa1350440 | 0.834792 | 2.441690e-56 | -8.615850e-47 |
| Msa0177230 | Msa1350440 | 0.803207 | 3.891997e-49 | -8.615850e-47 |
| Msa0221600 | Msa1350440 | 0.827937 | 1.186831e-54 | -8.615850e-47 |
| Msa0229360 | Msa1350440 | 0.802252 | 6.126168e-49 | -8.615850e-47 |
| Msa1256770 | Msa1350440 | 0.808656 | 2.782391e-50 | -8.615850e-47 |
| Msa1293590 | Msa1350440 | 0.818836 | 1.592404e-52 | -8.615850e-47 |
| Msa1340830 | Msa1350440 | 0.800226 | 1.591994e-48 | -8.615850e-47 |
| Msa0387470 | Msa1350440 | 0.887115 | 1.893456e-72 | -8.615850e-47 |
| Msa0419520 | Msa1350440 | 0.810849 | 9.395665e-51 | -8.615850e-47 |
| Msa0478580 | Msa1350440 | 0.805516 | 1.285520e-49 | -8.615850e-47 |
| Msa1025940 | Msa1350440 | 0.807079 | 6.022186e-50 | -8.615850e-47 |
| Msa1029970 | Msa1350440 | 0.802050 | 6.744029e-49 | -8.615850e-47 |
| Msa1083880 | Msa1350440 | 0.825463 | 4.623589e-54 | -8.615850e-47 |
| Msa0339760 | Msa1350440 | 0.859987 | 2.827591e-63 | -8.615850e-47 |
| Msa1114040 | Msa1350440 | 0.801954 | 7.054534e-49 | -8.615850e-47 |
| Msa1176360 | Msa1350440 | 0.801306 | 9.583165e-49 | -8.615850e-47 |
| Msa1176980 | Msa1350440 | 0.811154 | 8.070033e-51 | -8.615850e-47 |
| Msa0858440 | Msa1350440 | 0.812385 | 4.354964e-51 | -8.615850e-47 |
| Msa0895310 | Msa1350440 | 0.804688 | 1.915778e-49 | -8.615850e-47 |
| Msa0921870 | Msa1350440 | 0.841207 | 5.465787e-58 | -8.615850e-47 |
| Msa0963020 | Msa1350440 | 0.805019 | 1.633750e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1350440 | MtrunA17_Chr8g0349601 | 46.575 | 219 | 93 | 6 | 29 | 225 | 64 | 280 | 4.19e-50 | 164 |
| Msa1350440 | MtrunA17_Chr8g0393061 | 48.077 | 208 | 75 | 6 | 51 | 225 | 85 | 292 | 1.49e-49 | 164 |
| Msa1350440 | MtrunA17_Chr5g0402101 | 36.364 | 110 | 67 | 2 | 118 | 225 | 107 | 215 | 1.40e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1350440 | AT3G11400.1 | 60.163 | 123 | 48 | 1 | 104 | 225 | 172 | 294 | 1.48e-44 | 151 |
| Msa1350440 | AT3G11400.2 | 60.163 | 123 | 48 | 1 | 104 | 225 | 199 | 321 | 3.82e-44 | 150 |
| Msa1350440 | AT5G06000.1 | 59.821 | 112 | 44 | 1 | 117 | 227 | 178 | 289 | 4.53e-40 | 140 |
Find 61 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACAGGTTCTATGTATCTT+AGG | 0.176986 | tig0011504:-12288 | Msa1350440:three_prime_UTR |
| TTCCCTTCATAGGTTGTTCT+TGG | 0.237905 | tig0011504:+12419 | None:intergenic |
| TTCTAAATGCTAAACGATAT+TGG | 0.270250 | tig0011504:+12308 | None:intergenic |
| ACCATTAGGGTTTGGGTGTT+CGG | 0.275954 | tig0011504:+13626 | None:intergenic |
| CGATATTGGAAATTGATAAA+AGG | 0.281581 | tig0011504:+12322 | None:intergenic |
| TATGAGCTATTCAGTTGTTT+TGG | 0.281596 | tig0011504:-12602 | Msa1350440:CDS |
| CCATTAGGGTTTGGGTGTTC+GGG | 0.285720 | tig0011504:+13627 | None:intergenic |
| GACGATGGGTGGTTCATATC+AGG | 0.288856 | tig0011504:-12783 | Msa1350440:CDS |
| TCCATACGAAAAGGTCGTTT+TGG | 0.309321 | tig0011504:+12821 | None:intergenic |
| TCCCTTCATAGGTTGTTCTT+GGG | 0.318785 | tig0011504:+12420 | None:intergenic |
| AGCTACAAATCAAATCAAAT+TGG | 0.342976 | tig0011504:-13738 | Msa1350440:CDS |
| AGAGAAGGACCATTAGGGTT+TGG | 0.347093 | tig0011504:+13618 | None:intergenic |
| AAGTCTCCAATTCCCTTCAT+AGG | 0.363890 | tig0011504:+12409 | None:intergenic |
| GAGAGAGAGAAGGACCATTA+GGG | 0.366798 | tig0011504:+13613 | None:intergenic |
| CCTGCCTTGAGAGGTGGTGC+AGG | 0.367808 | tig0011504:-12716 | Msa1350440:CDS |
| GAGAAGGACCATTAGGGTTT+GGG | 0.373792 | tig0011504:+13619 | None:intergenic |
| GAACAACCTATGAAGGGAAT+TGG | 0.375387 | tig0011504:-12415 | Msa1350440:CDS |
| TTTGAAGAAAACTCTAACTT+GGG | 0.381459 | tig0011504:+13792 | None:intergenic |
| TAAGAAACATCTACATGAAC+TGG | 0.390855 | tig0011504:+13678 | None:intergenic |
| TCATAGGTTGTTCTTGGGGT+GGG | 0.395702 | tig0011504:+12425 | None:intergenic |
| GGTGGTGCAGGGAGGTCTGT+AGG | 0.417455 | tig0011504:-12704 | Msa1350440:CDS |
| CTACAATAATCTCATCTTGA+AGG | 0.422143 | tig0011504:-12456 | Msa1350440:CDS |
| TCTTGCTTAATTTATGTACA+TGG | 0.428508 | tig0011504:+12237 | None:intergenic |
| AACAGGTTCTATGTATCTTA+GGG | 0.432554 | tig0011504:-12287 | Msa1350440:three_prime_UTR |
| CTGAATAGCTCATACAAATC+AGG | 0.437655 | tig0011504:+12611 | None:intergenic |
| CCCGAACACCCAAACCCTAA+TGG | 0.444115 | tig0011504:-13627 | Msa1350440:intron |
| TATCGTTTAGCATTTAGAAC+AGG | 0.450763 | tig0011504:-12304 | Msa1350440:three_prime_UTR |
| TTCATAGGTTGTTCTTGGGG+TGG | 0.454699 | tig0011504:+12424 | None:intergenic |
| TCAAATTGGTGAGGAAAGAA+TGG | 0.467811 | tig0011504:-13724 | Msa1350440:CDS |
| ATCTCATCTTGAAGGTTGAA+TGG | 0.477563 | tig0011504:-12448 | Msa1350440:CDS |
| ACCCCAAGAACAACCTATGA+AGG | 0.483719 | tig0011504:-12422 | Msa1350440:CDS |
| CCTCATGTTCTTCGAGAGGT+TGG | 0.484277 | tig0011504:+12637 | None:intergenic |
| GCTATGTCACCTTTGTCAGC+AGG | 0.494544 | tig0011504:-12520 | Msa1350440:CDS |
| CCCTTCATAGGTTGTTCTTG+GGG | 0.495515 | tig0011504:+12421 | None:intergenic |
| CCTGCACCACCTCTCAAGGC+AGG | 0.512096 | tig0011504:+12716 | None:intergenic |
| CTGCCTTGAGAGGTGGTGCA+GGG | 0.512726 | tig0011504:-12715 | Msa1350440:CDS |
| GTGGTGCAGGGAGGTCTGTA+GGG | 0.520790 | tig0011504:-12703 | Msa1350440:CDS |
| TAAACAGGTTCAATAAATGA+TGG | 0.523431 | tig0011504:-12854 | Msa1350440:intron |
| GTGATGCATTCCATACGAAA+AGG | 0.547529 | tig0011504:+12812 | None:intergenic |
| CCTCCCTGCACCACCTCTCA+AGG | 0.556170 | tig0011504:+12712 | None:intergenic |
| AGCATCTTCCCTGCTGACAA+AGG | 0.563882 | tig0011504:+12511 | None:intergenic |
| TTGATAAAAGGAAAGACAGA+AGG | 0.569974 | tig0011504:+12334 | None:intergenic |
| TATGTAGCTCCTGCCTTGAG+AGG | 0.579522 | tig0011504:-12725 | Msa1350440:CDS |
| GAACAATGAGATTTACGTGC+GGG | 0.586065 | tig0011504:-12663 | Msa1350440:CDS |
| GTAGCTCCTGCCTTGAGAGG+TGG | 0.590563 | tig0011504:-12722 | Msa1350440:CDS |
| CTATGTCACCTTTGTCAGCA+GGG | 0.596701 | tig0011504:-12519 | Msa1350440:CDS |
| ACGATGGGTGGTTCATATCA+GGG | 0.596881 | tig0011504:-12782 | Msa1350440:CDS |
| AGAGCTGTTAACAAACTCAA+TGG | 0.598173 | tig0011504:-12485 | Msa1350440:CDS |
| GCTCCCTCATGTTCTTCGAG+AGG | 0.602227 | tig0011504:+12633 | None:intergenic |
| TAGGGTCAGACATGAGGCAG+AGG | 0.607730 | tig0011504:-12685 | Msa1350440:CDS |
| CCTTGAGAGGTGGTGCAGGG+AGG | 0.610063 | tig0011504:-12712 | Msa1350440:CDS |
| CCCCAAGAACAACCTATGAA+GGG | 0.616746 | tig0011504:-12421 | Msa1350440:CDS |
| GGAGCTACATATACACCCCT+AGG | 0.622184 | tig0011504:+12737 | None:intergenic |
| GGTCTGTAGGGTCAGACATG+AGG | 0.626411 | tig0011504:-12691 | Msa1350440:CDS |
| CAAATCAAATCAAATTGGTG+AGG | 0.628896 | tig0011504:-13733 | Msa1350440:CDS |
| CCAACCTCTCGAAGAACATG+AGG | 0.632828 | tig0011504:-12637 | Msa1350440:CDS |
| TATACACCCCTAGGAACGAA+TGG | 0.642906 | tig0011504:+12746 | None:intergenic |
| AAAATACTGACATGTGTAGG+GGG | 0.649056 | tig0011504:-12547 | Msa1350440:CDS |
| CAACCTCTCGAAGAACATGA+GGG | 0.663029 | tig0011504:-12636 | Msa1350440:CDS |
| GGAAAGAATGGATCGACAAG+CGG | 0.664958 | tig0011504:-13712 | Msa1350440:CDS |
| GGAACAATGAGATTTACGTG+CGG | 0.721225 | tig0011504:-12664 | Msa1350440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAATCCAACAATTTTTA+GGG | + | tig0011504:12568-12587 | None:intergenic | 15.0% |
| !!! | AATTAAATCCAACAATTTTT+AGG | + | tig0011504:12569-12588 | None:intergenic | 15.0% |
| !!! | ATTAAATCCAACAATTTTTA+GGG | + | tig0011504:12568-12587 | None:intergenic | 15.0% |
| !!! | AATTAAATCCAACAATTTTT+AGG | + | tig0011504:12569-12588 | None:intergenic | 15.0% |
| !!! | GTGAAAATTTTGTTGTTTTA+GGG | + | tig0011504:12238-12257 | None:intergenic | 20.0% |
| !!! | TGTGAAAATTTTGTTGTTTT+AGG | + | tig0011504:12239-12258 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCCATTTGAATCT+AGG | - | tig0011504:12502-12521 | Msa1350440:CDS | 20.0% |
| !! | ATAAAAAACCTAGATTCAAA+TGG | + | tig0011504:12513-12532 | None:intergenic | 20.0% |
| !! | ACTGTTAACTTATTTATCAT+CGG | + | tig0011504:13046-13065 | None:intergenic | 20.0% |
| !!! | GTGAAAATTTTGTTGTTTTA+GGG | + | tig0011504:12238-12257 | None:intergenic | 20.0% |
| !!! | TGTGAAAATTTTGTTGTTTT+AGG | + | tig0011504:12239-12258 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCCATTTGAATCT+AGG | - | tig0011504:12502-12521 | Msa1350440:CDS | 20.0% |
| !! | ATAAAAAACCTAGATTCAAA+TGG | + | tig0011504:12513-12532 | None:intergenic | 20.0% |
| !! | ACTGTTAACTTATTTATCAT+CGG | + | tig0011504:13046-13065 | None:intergenic | 20.0% |
| ! | TTTGAAGAAAACTCTAACTT+GGG | + | tig0011504:12266-12285 | None:intergenic | 25.0% |
| !!! | TTTTGAAGAAAACTCTAACT+TGG | + | tig0011504:12267-12286 | None:intergenic | 25.0% |
| ! | AGCTACAAATCAAATCAAAT+TGG | - | tig0011504:12317-12336 | Msa1350440:three_prime_UTR | 25.0% |
| ! | TATTGAACCCTAAAAATTGT+TGG | - | tig0011504:12558-12577 | Msa1350440:CDS | 25.0% |
| ! | TAGATAGATAGATAGTTGTT+TGG | - | tig0011504:12599-12618 | Msa1350440:CDS | 25.0% |
| ! | TTGTAACACACAATATTGAT+TGG | - | tig0011504:12815-12834 | Msa1350440:CDS | 25.0% |
| !! | TGCATGAAATTTCTTACTTT+TGG | - | tig0011504:12911-12930 | Msa1350440:intron | 25.0% |
| !!! | GCATGAAATTTCTTACTTTT+GGG | - | tig0011504:12912-12931 | Msa1350440:intron | 25.0% |
| !!! | CATGAAATTTCTTACTTTTG+GGG | - | tig0011504:12913-12932 | Msa1350440:intron | 25.0% |
| !!! | ATGAAATTTCTTACTTTTGG+GGG | - | tig0011504:12914-12933 | Msa1350440:intron | 25.0% |
| ! | CTTCTATAACAAATCATATG+TGG | - | tig0011504:13077-13096 | Msa1350440:intron | 25.0% |
| ! | GAGTTATCATGATATTGAAA+GGG | + | tig0011504:13163-13182 | None:intergenic | 25.0% |
| ! | AGAGTTATCATGATATTGAA+AGG | + | tig0011504:13164-13183 | None:intergenic | 25.0% |
| ! | TAAACAGGTTCAATAAATGA+TGG | - | tig0011504:13201-13220 | Msa1350440:intron | 25.0% |
| ! | ATAAAAATACTGACATGTGT+AGG | - | tig0011504:13505-13524 | Msa1350440:intron | 25.0% |
| ! | TAAAAATACTGACATGTGTA+GGG | - | tig0011504:13506-13525 | Msa1350440:intron | 25.0% |
| ! | CGATATTGGAAATTGATAAA+AGG | + | tig0011504:13736-13755 | None:intergenic | 25.0% |
| ! | TTCTAAATGCTAAACGATAT+TGG | + | tig0011504:13750-13769 | None:intergenic | 25.0% |
| ! | TCTTGCTTAATTTATGTACA+TGG | + | tig0011504:13821-13840 | None:intergenic | 25.0% |
| ! | TTTGAAGAAAACTCTAACTT+GGG | + | tig0011504:12266-12285 | None:intergenic | 25.0% |
| !!! | TTTTGAAGAAAACTCTAACT+TGG | + | tig0011504:12267-12286 | None:intergenic | 25.0% |
| ! | AGCTACAAATCAAATCAAAT+TGG | - | tig0011504:12317-12336 | Msa1350440:three_prime_UTR | 25.0% |
| ! | TATTGAACCCTAAAAATTGT+TGG | - | tig0011504:12558-12577 | Msa1350440:CDS | 25.0% |
| ! | TAGATAGATAGATAGTTGTT+TGG | - | tig0011504:12599-12618 | Msa1350440:CDS | 25.0% |
| ! | TTGTAACACACAATATTGAT+TGG | - | tig0011504:12815-12834 | Msa1350440:CDS | 25.0% |
| !! | TGCATGAAATTTCTTACTTT+TGG | - | tig0011504:12911-12930 | Msa1350440:intron | 25.0% |
| !!! | GCATGAAATTTCTTACTTTT+GGG | - | tig0011504:12912-12931 | Msa1350440:intron | 25.0% |
| !!! | CATGAAATTTCTTACTTTTG+GGG | - | tig0011504:12913-12932 | Msa1350440:intron | 25.0% |
| !!! | ATGAAATTTCTTACTTTTGG+GGG | - | tig0011504:12914-12933 | Msa1350440:intron | 25.0% |
| ! | CTTCTATAACAAATCATATG+TGG | - | tig0011504:13077-13096 | Msa1350440:intron | 25.0% |
| ! | GAGTTATCATGATATTGAAA+GGG | + | tig0011504:13163-13182 | None:intergenic | 25.0% |
| ! | AGAGTTATCATGATATTGAA+AGG | + | tig0011504:13164-13183 | None:intergenic | 25.0% |
| ! | TAAACAGGTTCAATAAATGA+TGG | - | tig0011504:13201-13220 | Msa1350440:intron | 25.0% |
| ! | ATAAAAATACTGACATGTGT+AGG | - | tig0011504:13505-13524 | Msa1350440:intron | 25.0% |
| ! | TAAAAATACTGACATGTGTA+GGG | - | tig0011504:13506-13525 | Msa1350440:intron | 25.0% |
| ! | CGATATTGGAAATTGATAAA+AGG | + | tig0011504:13736-13755 | None:intergenic | 25.0% |
| ! | TTCTAAATGCTAAACGATAT+TGG | + | tig0011504:13750-13769 | None:intergenic | 25.0% |
| ! | TCTTGCTTAATTTATGTACA+TGG | + | tig0011504:13821-13840 | None:intergenic | 25.0% |
| CAAATCAAATCAAATTGGTG+AGG | - | tig0011504:12322-12341 | Msa1350440:three_prime_UTR | 30.0% | |
| TAAGAAACATCTACATGAAC+TGG | + | tig0011504:12380-12399 | None:intergenic | 30.0% | |
| ! | ACCTTGCACAATTTTATACT+TGG | - | tig0011504:12729-12748 | Msa1350440:CDS | 30.0% |
| ! | CCTTGCACAATTTTATACTT+GGG | - | tig0011504:12730-12749 | Msa1350440:CDS | 30.0% |
| ! | ACACACAATATTGATTGGAT+TGG | - | tig0011504:12820-12839 | Msa1350440:CDS | 30.0% |
| !!! | TAGGAACGAATGGTTTTTTT+GGG | + | tig0011504:13302-13321 | None:intergenic | 30.0% |
| AAAAAAACCATTCGTTCCTA+GGG | - | tig0011504:13302-13321 | Msa1350440:intron | 30.0% | |
| ! | TATGAGCTATTCAGTTGTTT+TGG | - | tig0011504:13453-13472 | Msa1350440:intron | 30.0% |
| AAAAATACTGACATGTGTAG+GGG | - | tig0011504:13507-13526 | Msa1350440:intron | 30.0% | |
| CTACAATAATCTCATCTTGA+AGG | - | tig0011504:13599-13618 | Msa1350440:intron | 30.0% | |
| TTGATAAAAGGAAAGACAGA+AGG | + | tig0011504:13724-13743 | None:intergenic | 30.0% | |
| ! | TATCGTTTAGCATTTAGAAC+AGG | - | tig0011504:13751-13770 | Msa1350440:CDS | 30.0% |
| AACAGGTTCTATGTATCTTA+GGG | - | tig0011504:13768-13787 | Msa1350440:CDS | 30.0% | |
| CAAATCAAATCAAATTGGTG+AGG | - | tig0011504:12322-12341 | Msa1350440:three_prime_UTR | 30.0% | |
| TAAGAAACATCTACATGAAC+TGG | + | tig0011504:12380-12399 | None:intergenic | 30.0% | |
| ! | ACCTTGCACAATTTTATACT+TGG | - | tig0011504:12729-12748 | Msa1350440:CDS | 30.0% |
| ! | CCTTGCACAATTTTATACTT+GGG | - | tig0011504:12730-12749 | Msa1350440:CDS | 30.0% |
| ! | ACACACAATATTGATTGGAT+TGG | - | tig0011504:12820-12839 | Msa1350440:CDS | 30.0% |
| !!! | TAGGAACGAATGGTTTTTTT+GGG | + | tig0011504:13302-13321 | None:intergenic | 30.0% |
| AAAAAAACCATTCGTTCCTA+GGG | - | tig0011504:13302-13321 | Msa1350440:intron | 30.0% | |
| ! | TATGAGCTATTCAGTTGTTT+TGG | - | tig0011504:13453-13472 | Msa1350440:intron | 30.0% |
| AAAAATACTGACATGTGTAG+GGG | - | tig0011504:13507-13526 | Msa1350440:intron | 30.0% | |
| CTACAATAATCTCATCTTGA+AGG | - | tig0011504:13599-13618 | Msa1350440:intron | 30.0% | |
| TTGATAAAAGGAAAGACAGA+AGG | + | tig0011504:13724-13743 | None:intergenic | 30.0% | |
| ! | TATCGTTTAGCATTTAGAAC+AGG | - | tig0011504:13751-13770 | Msa1350440:CDS | 30.0% |
| AACAGGTTCTATGTATCTTA+GGG | - | tig0011504:13768-13787 | Msa1350440:CDS | 30.0% | |
| TCAAATTGGTGAGGAAAGAA+TGG | - | tig0011504:12331-12350 | Msa1350440:three_prime_UTR | 35.0% | |
| ! | ATAGTGTAGCTTACTAGCTT+TGG | + | tig0011504:12634-12653 | None:intergenic | 35.0% |
| TGCAAACAAATCACAATGCT+TGG | - | tig0011504:12667-12686 | Msa1350440:CDS | 35.0% | |
| CCCAAGTATAAAATTGTGCA+AGG | + | tig0011504:12733-12752 | None:intergenic | 35.0% | |
| ATCTTGCTGCTATTGTAAAC+AGG | - | tig0011504:13186-13205 | Msa1350440:intron | 35.0% | |
| !!! | CTAGGAACGAATGGTTTTTT+TGG | + | tig0011504:13303-13322 | None:intergenic | 35.0% |
| CAAAAAAACCATTCGTTCCT+AGG | - | tig0011504:13301-13320 | Msa1350440:intron | 35.0% | |
| AAAAAACCATTCGTTCCTAG+GGG | - | tig0011504:13303-13322 | Msa1350440:intron | 35.0% | |
| CTGAATAGCTCATACAAATC+AGG | + | tig0011504:13447-13466 | None:intergenic | 35.0% | |
| AAAATACTGACATGTGTAGG+GGG | - | tig0011504:13508-13527 | Msa1350440:intron | 35.0% | |
| AGAGCTGTTAACAAACTCAA+TGG | - | tig0011504:13570-13589 | Msa1350440:intron | 35.0% | |
| ATCTCATCTTGAAGGTTGAA+TGG | - | tig0011504:13607-13626 | Msa1350440:intron | 35.0% | |
| GAACAGGTTCTATGTATCTT+AGG | - | tig0011504:13767-13786 | Msa1350440:CDS | 35.0% | |
| TCAAATTGGTGAGGAAAGAA+TGG | - | tig0011504:12331-12350 | Msa1350440:three_prime_UTR | 35.0% | |
| ! | ATAGTGTAGCTTACTAGCTT+TGG | + | tig0011504:12634-12653 | None:intergenic | 35.0% |
| TGCAAACAAATCACAATGCT+TGG | - | tig0011504:12667-12686 | Msa1350440:CDS | 35.0% | |
| CCCAAGTATAAAATTGTGCA+AGG | + | tig0011504:12733-12752 | None:intergenic | 35.0% | |
| ATCTTGCTGCTATTGTAAAC+AGG | - | tig0011504:13186-13205 | Msa1350440:intron | 35.0% | |
| !!! | CTAGGAACGAATGGTTTTTT+TGG | + | tig0011504:13303-13322 | None:intergenic | 35.0% |
| CAAAAAAACCATTCGTTCCT+AGG | - | tig0011504:13301-13320 | Msa1350440:intron | 35.0% | |
| AAAAAACCATTCGTTCCTAG+GGG | - | tig0011504:13303-13322 | Msa1350440:intron | 35.0% | |
| CTGAATAGCTCATACAAATC+AGG | + | tig0011504:13447-13466 | None:intergenic | 35.0% | |
| AAAATACTGACATGTGTAGG+GGG | - | tig0011504:13508-13527 | Msa1350440:intron | 35.0% | |
| AGAGCTGTTAACAAACTCAA+TGG | - | tig0011504:13570-13589 | Msa1350440:intron | 35.0% | |
| ATCTCATCTTGAAGGTTGAA+TGG | - | tig0011504:13607-13626 | Msa1350440:intron | 35.0% | |
| GAACAGGTTCTATGTATCTT+AGG | - | tig0011504:13767-13786 | Msa1350440:CDS | 35.0% | |
| ! | TCCAAAACGACCTTTTCGTA+TGG | - | tig0011504:13233-13252 | Msa1350440:intron | 40.0% |
| ! | TCCATACGAAAAGGTCGTTT+TGG | + | tig0011504:13237-13256 | None:intergenic | 40.0% |
| GTGATGCATTCCATACGAAA+AGG | + | tig0011504:13246-13265 | None:intergenic | 40.0% | |
| !!! | ATGCATCACTTTTGAGACGA+TGG | - | tig0011504:13257-13276 | Msa1350440:intron | 40.0% |
| !!! | TGCATCACTTTTGAGACGAT+GGG | - | tig0011504:13258-13277 | Msa1350440:intron | 40.0% |
| GGAACAATGAGATTTACGTG+CGG | - | tig0011504:13391-13410 | Msa1350440:intron | 40.0% | |
| GAACAATGAGATTTACGTGC+GGG | - | tig0011504:13392-13411 | Msa1350440:intron | 40.0% | |
| TCCCTTCATAGGTTGTTCTT+GGG | + | tig0011504:13638-13657 | None:intergenic | 40.0% | |
| TTCCCTTCATAGGTTGTTCT+TGG | + | tig0011504:13639-13658 | None:intergenic | 40.0% | |
| GAACAACCTATGAAGGGAAT+TGG | - | tig0011504:13640-13659 | Msa1350440:CDS | 40.0% | |
| AAGTCTCCAATTCCCTTCAT+AGG | + | tig0011504:13649-13668 | None:intergenic | 40.0% | |
| ! | TCCAAAACGACCTTTTCGTA+TGG | - | tig0011504:13233-13252 | Msa1350440:intron | 40.0% |
| ! | TCCATACGAAAAGGTCGTTT+TGG | + | tig0011504:13237-13256 | None:intergenic | 40.0% |
| GTGATGCATTCCATACGAAA+AGG | + | tig0011504:13246-13265 | None:intergenic | 40.0% | |
| !!! | ATGCATCACTTTTGAGACGA+TGG | - | tig0011504:13257-13276 | Msa1350440:intron | 40.0% |
| !!! | TGCATCACTTTTGAGACGAT+GGG | - | tig0011504:13258-13277 | Msa1350440:intron | 40.0% |
| GGAACAATGAGATTTACGTG+CGG | - | tig0011504:13391-13410 | Msa1350440:intron | 40.0% | |
| GAACAATGAGATTTACGTGC+GGG | - | tig0011504:13392-13411 | Msa1350440:intron | 40.0% | |
| TCCCTTCATAGGTTGTTCTT+GGG | + | tig0011504:13638-13657 | None:intergenic | 40.0% | |
| TTCCCTTCATAGGTTGTTCT+TGG | + | tig0011504:13639-13658 | None:intergenic | 40.0% | |
| GAACAACCTATGAAGGGAAT+TGG | - | tig0011504:13640-13659 | Msa1350440:CDS | 40.0% | |
| AAGTCTCCAATTCCCTTCAT+AGG | + | tig0011504:13649-13668 | None:intergenic | 40.0% | |
| GGAAAGAATGGATCGACAAG+CGG | - | tig0011504:12343-12362 | Msa1350440:three_prime_UTR | 45.0% | |
| ACCATTAGGGTTTGGGTGTT+CGG | + | tig0011504:12432-12451 | None:intergenic | 45.0% | |
| GAGAAGGACCATTAGGGTTT+GGG | + | tig0011504:12439-12458 | None:intergenic | 45.0% | |
| AGAGAAGGACCATTAGGGTT+TGG | + | tig0011504:12440-12459 | None:intergenic | 45.0% | |
| GAGAGAGAGAAGGACCATTA+GGG | + | tig0011504:12445-12464 | None:intergenic | 45.0% | |
| AGAGAGAGAGAAGGACCATT+AGG | + | tig0011504:12446-12465 | None:intergenic | 45.0% | |
| !!! | ATCACTTTTGAGACGATGGG+TGG | - | tig0011504:13261-13280 | Msa1350440:intron | 45.0% |
| ACGATGGGTGGTTCATATCA+GGG | - | tig0011504:13273-13292 | Msa1350440:intron | 45.0% | |
| TATACACCCCTAGGAACGAA+TGG | + | tig0011504:13312-13331 | None:intergenic | 45.0% | |
| CAACCTCTCGAAGAACATGA+GGG | - | tig0011504:13419-13438 | Msa1350440:intron | 45.0% | |
| CTATGTCACCTTTGTCAGCA+GGG | - | tig0011504:13536-13555 | Msa1350440:intron | 45.0% | |
| TCATAGGTTGTTCTTGGGGT+GGG | + | tig0011504:13633-13652 | None:intergenic | 45.0% | |
| TTCATAGGTTGTTCTTGGGG+TGG | + | tig0011504:13634-13653 | None:intergenic | 45.0% | |
| ACCCCAAGAACAACCTATGA+AGG | - | tig0011504:13633-13652 | Msa1350440:CDS | 45.0% | |
| CCCTTCATAGGTTGTTCTTG+GGG | + | tig0011504:13637-13656 | None:intergenic | 45.0% | |
| CCCCAAGAACAACCTATGAA+GGG | - | tig0011504:13634-13653 | Msa1350440:CDS | 45.0% | |
| GGAAAGAATGGATCGACAAG+CGG | - | tig0011504:12343-12362 | Msa1350440:three_prime_UTR | 45.0% | |
| ACCATTAGGGTTTGGGTGTT+CGG | + | tig0011504:12432-12451 | None:intergenic | 45.0% | |
| GAGAAGGACCATTAGGGTTT+GGG | + | tig0011504:12439-12458 | None:intergenic | 45.0% | |
| AGAGAAGGACCATTAGGGTT+TGG | + | tig0011504:12440-12459 | None:intergenic | 45.0% | |
| GAGAGAGAGAAGGACCATTA+GGG | + | tig0011504:12445-12464 | None:intergenic | 45.0% | |
| AGAGAGAGAGAAGGACCATT+AGG | + | tig0011504:12446-12465 | None:intergenic | 45.0% | |
| !!! | ATCACTTTTGAGACGATGGG+TGG | - | tig0011504:13261-13280 | Msa1350440:intron | 45.0% |
| ACGATGGGTGGTTCATATCA+GGG | - | tig0011504:13273-13292 | Msa1350440:intron | 45.0% | |
| TATACACCCCTAGGAACGAA+TGG | + | tig0011504:13312-13331 | None:intergenic | 45.0% | |
| CAACCTCTCGAAGAACATGA+GGG | - | tig0011504:13419-13438 | Msa1350440:intron | 45.0% | |
| CTATGTCACCTTTGTCAGCA+GGG | - | tig0011504:13536-13555 | Msa1350440:intron | 45.0% | |
| TCATAGGTTGTTCTTGGGGT+GGG | + | tig0011504:13633-13652 | None:intergenic | 45.0% | |
| TTCATAGGTTGTTCTTGGGG+TGG | + | tig0011504:13634-13653 | None:intergenic | 45.0% | |
| ACCCCAAGAACAACCTATGA+AGG | - | tig0011504:13633-13652 | Msa1350440:CDS | 45.0% | |
| CCCTTCATAGGTTGTTCTTG+GGG | + | tig0011504:13637-13656 | None:intergenic | 45.0% | |
| CCCCAAGAACAACCTATGAA+GGG | - | tig0011504:13634-13653 | Msa1350440:CDS | 45.0% | |
| CCATTAGGGTTTGGGTGTTC+GGG | + | tig0011504:12431-12450 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+AGG | + | tig0011504:12455-12474 | None:intergenic | 50.0% | |
| GACGATGGGTGGTTCATATC+AGG | - | tig0011504:13272-13291 | Msa1350440:intron | 50.0% | |
| GGAGCTACATATACACCCCT+AGG | + | tig0011504:13321-13340 | None:intergenic | 50.0% | |
| TATGTAGCTCCTGCCTTGAG+AGG | - | tig0011504:13330-13349 | Msa1350440:intron | 50.0% | |
| CCTCATGTTCTTCGAGAGGT+TGG | + | tig0011504:13421-13440 | None:intergenic | 50.0% | |
| CCAACCTCTCGAAGAACATG+AGG | - | tig0011504:13418-13437 | Msa1350440:intron | 50.0% | |
| GCTATGTCACCTTTGTCAGC+AGG | - | tig0011504:13535-13554 | Msa1350440:intron | 50.0% | |
| AGCATCTTCCCTGCTGACAA+AGG | + | tig0011504:13547-13566 | None:intergenic | 50.0% | |
| CCATTAGGGTTTGGGTGTTC+GGG | + | tig0011504:12431-12450 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+AGG | + | tig0011504:12455-12474 | None:intergenic | 50.0% | |
| GACGATGGGTGGTTCATATC+AGG | - | tig0011504:13272-13291 | Msa1350440:intron | 50.0% | |
| GGAGCTACATATACACCCCT+AGG | + | tig0011504:13321-13340 | None:intergenic | 50.0% | |
| TATGTAGCTCCTGCCTTGAG+AGG | - | tig0011504:13330-13349 | Msa1350440:intron | 50.0% | |
| CCTCATGTTCTTCGAGAGGT+TGG | + | tig0011504:13421-13440 | None:intergenic | 50.0% | |
| CCAACCTCTCGAAGAACATG+AGG | - | tig0011504:13418-13437 | Msa1350440:intron | 50.0% | |
| GCTATGTCACCTTTGTCAGC+AGG | - | tig0011504:13535-13554 | Msa1350440:intron | 50.0% | |
| AGCATCTTCCCTGCTGACAA+AGG | + | tig0011504:13547-13566 | None:intergenic | 50.0% | |
| CCCGAACACCCAAACCCTAA+TGG | - | tig0011504:12428-12447 | Msa1350440:CDS | 55.0% | |
| GGTCTGTAGGGTCAGACATG+AGG | - | tig0011504:13364-13383 | Msa1350440:intron | 55.0% | |
| TAGGGTCAGACATGAGGCAG+AGG | - | tig0011504:13370-13389 | Msa1350440:intron | 55.0% | |
| GCTCCCTCATGTTCTTCGAG+AGG | + | tig0011504:13425-13444 | None:intergenic | 55.0% | |
| ACTGACATGTGTAGGGGGTG+TGG | - | tig0011504:13513-13532 | Msa1350440:intron | 55.0% | |
| CCCGAACACCCAAACCCTAA+TGG | - | tig0011504:12428-12447 | Msa1350440:CDS | 55.0% | |
| GGTCTGTAGGGTCAGACATG+AGG | - | tig0011504:13364-13383 | Msa1350440:intron | 55.0% | |
| TAGGGTCAGACATGAGGCAG+AGG | - | tig0011504:13370-13389 | Msa1350440:intron | 55.0% | |
| GCTCCCTCATGTTCTTCGAG+AGG | + | tig0011504:13425-13444 | None:intergenic | 55.0% | |
| ACTGACATGTGTAGGGGGTG+TGG | - | tig0011504:13513-13532 | Msa1350440:intron | 55.0% | |
| GTAGCTCCTGCCTTGAGAGG+TGG | - | tig0011504:13333-13352 | Msa1350440:intron | 60.0% | |
| CTGCCTTGAGAGGTGGTGCA+GGG | - | tig0011504:13340-13359 | Msa1350440:intron | 60.0% | |
| GTGGTGCAGGGAGGTCTGTA+GGG | - | tig0011504:13352-13371 | Msa1350440:intron | 60.0% | |
| GTAGCTCCTGCCTTGAGAGG+TGG | - | tig0011504:13333-13352 | Msa1350440:intron | 60.0% | |
| CTGCCTTGAGAGGTGGTGCA+GGG | - | tig0011504:13340-13359 | Msa1350440:intron | 60.0% | |
| GTGGTGCAGGGAGGTCTGTA+GGG | - | tig0011504:13352-13371 | Msa1350440:intron | 60.0% | |
| CCTGCACCACCTCTCAAGGC+AGG | + | tig0011504:13342-13361 | None:intergenic | 65.0% | |
| CCTGCCTTGAGAGGTGGTGC+AGG | - | tig0011504:13339-13358 | Msa1350440:intron | 65.0% | |
| CCTCCCTGCACCACCTCTCA+AGG | + | tig0011504:13346-13365 | None:intergenic | 65.0% | |
| CCTTGAGAGGTGGTGCAGGG+AGG | - | tig0011504:13343-13362 | Msa1350440:intron | 65.0% | |
| GGTGGTGCAGGGAGGTCTGT+AGG | - | tig0011504:13351-13370 | Msa1350440:intron | 65.0% | |
| CCTGCACCACCTCTCAAGGC+AGG | + | tig0011504:13342-13361 | None:intergenic | 65.0% | |
| CCTGCCTTGAGAGGTGGTGC+AGG | - | tig0011504:13339-13358 | Msa1350440:intron | 65.0% | |
| CCTCCCTGCACCACCTCTCA+AGG | + | tig0011504:13346-13365 | None:intergenic | 65.0% | |
| CCTTGAGAGGTGGTGCAGGG+AGG | - | tig0011504:13343-13362 | Msa1350440:intron | 65.0% | |
| GGTGGTGCAGGGAGGTCTGT+AGG | - | tig0011504:13351-13370 | Msa1350440:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0011504 | gene | 12215 | 13862 | 12215 | ID=Msa1350440;Name=Msa1350440 |
| tig0011504 | mRNA | 12215 | 13862 | 12215 | ID=Msa1350440-mRNA-1;Parent=Msa1350440;Name=Msa1350440-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|1|1|1|1|2|188|233 |
| tig0011504 | exon | 12215 | 12869 | 12215 | ID=Msa1350440-mRNA-1:exon:7399;Parent=Msa1350440-mRNA-1 |
| tig0011504 | exon | 13628 | 13862 | 13628 | ID=Msa1350440-mRNA-1:exon:7398;Parent=Msa1350440-mRNA-1 |
| tig0011504 | CDS | 13628 | 13862 | 13628 | ID=Msa1350440-mRNA-1:cds;Parent=Msa1350440-mRNA-1 |
| tig0011504 | CDS | 12403 | 12869 | 12403 | ID=Msa1350440-mRNA-1:cds;Parent=Msa1350440-mRNA-1 |
| tig0011504 | three_prime_UTR | 12215 | 12402 | 12215 | ID=Msa1350440-mRNA-1:three_prime_utr;Parent=Msa1350440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
