Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387470 | KAE9614424.1 | 46.829 | 205 | 79 | 4 | 51 | 225 | 79 | 283 | 1.89e-47 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387470 | sp|A7SKE9|EIF3G_NEMVE | 47.273 | 110 | 54 | 2 | 118 | 224 | 184 | 292 | 3.02e-24 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387470 | A0A6A5MI36 | 46.829 | 205 | 79 | 4 | 51 | 225 | 79 | 283 | 9.00e-48 | 168 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006880 | Msa0387470 | 0.805898 | 1.068843e-49 | -8.615850e-47 |
| Msa0033880 | Msa0387470 | 0.821794 | 3.341556e-53 | -8.615850e-47 |
| Msa0043860 | Msa0387470 | 0.800745 | 1.247851e-48 | -8.615850e-47 |
| Msa0055100 | Msa0387470 | 0.806315 | 8.733542e-50 | -8.615850e-47 |
| Msa0068000 | Msa0387470 | 0.814121 | 1.809774e-51 | -8.615850e-47 |
| Msa0068020 | Msa0387470 | 0.809054 | 2.287288e-50 | -8.615850e-47 |
| Msa0077010 | Msa0387470 | 0.809821 | 1.565917e-50 | -8.615850e-47 |
| Msa0108870 | Msa0387470 | 0.800773 | 1.231338e-48 | -8.615850e-47 |
| Msa0115460 | Msa0387470 | 0.800142 | 1.655435e-48 | -8.615850e-47 |
| Msa0115500 | Msa0387470 | 0.801469 | 8.874159e-49 | -8.615850e-47 |
| Msa0127850 | Msa0387470 | 0.813370 | 2.649320e-51 | -8.615850e-47 |
| Msa0174000 | Msa0387470 | 0.818907 | 1.534187e-52 | -8.615850e-47 |
| Msa0177230 | Msa0387470 | 0.825910 | 3.623362e-54 | -8.615850e-47 |
| Msa0219100 | Msa0387470 | 0.800907 | 1.156399e-48 | -8.615850e-47 |
| Msa0387470 | Msa0523680 | 0.825797 | 3.853904e-54 | -8.615850e-47 |
| Msa0387470 | Msa0580950 | 0.805108 | 1.565036e-49 | -8.615850e-47 |
| Msa0387470 | Msa0593700 | 0.817253 | 3.630293e-52 | -8.615850e-47 |
| Msa0387470 | Msa0609000 | 0.819572 | 1.082729e-52 | -8.615850e-47 |
| Msa0387470 | Msa0619920 | 0.819725 | 9.990079e-53 | -8.615850e-47 |
| Msa0387470 | Msa0633570 | 0.803151 | 3.996384e-49 | -8.615850e-47 |
| Msa0387470 | Msa0697720 | 0.806617 | 7.540707e-50 | -8.615850e-47 |
| Msa0387470 | Msa0706390 | 0.801467 | 8.882360e-49 | -8.615850e-47 |
| Msa0387470 | Msa0745200 | 0.813132 | 2.988271e-51 | -8.615850e-47 |
| Msa0387470 | Msa0819540 | 0.802850 | 4.613685e-49 | -8.615850e-47 |
| Msa0387470 | Msa0901450 | 0.809096 | 2.239843e-50 | -8.615850e-47 |
| Msa0387470 | Msa0963020 | 0.801530 | 8.621149e-49 | -8.615850e-47 |
| Msa0387470 | Msa1025940 | 0.817941 | 2.539526e-52 | -8.615850e-47 |
| Msa0387470 | Msa1083880 | 0.829429 | 5.174539e-55 | -8.615850e-47 |
| Msa0387470 | Msa1152520 | 0.818726 | 1.686714e-52 | -8.615850e-47 |
| Msa0387470 | Msa1204830 | 0.812862 | 3.423980e-51 | -8.615850e-47 |
| Msa0387470 | Msa1205850 | 0.808816 | 2.572048e-50 | -8.615850e-47 |
| Msa0387470 | Msa1206650 | 0.805624 | 1.220476e-49 | -8.615850e-47 |
| Msa0387470 | Msa1256770 | 0.836701 | 8.020540e-57 | -8.615850e-47 |
| Msa0387470 | Msa1288510 | 0.801999 | 6.907050e-49 | -8.615850e-47 |
| Msa0387470 | Msa1298050 | 0.802743 | 4.854259e-49 | -8.615850e-47 |
| Msa0387470 | Msa1317270 | 0.802544 | 5.335879e-49 | -8.615850e-47 |
| Msa0387470 | Msa1350440 | 0.887115 | 1.893456e-72 | -8.615850e-47 |
| Msa0387470 | Msa1408150 | 0.801340 | 9.431818e-49 | -8.615850e-47 |
| Msa0339760 | Msa0387470 | 0.945353 | 3.580021e-104 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387470 | MtrunA17_Chr8g0349601 | 46.575 | 219 | 93 | 6 | 29 | 225 | 64 | 280 | 2.44e-50 | 165 |
| Msa0387470 | MtrunA17_Chr8g0393061 | 48.077 | 208 | 75 | 6 | 51 | 225 | 85 | 292 | 1.56e-49 | 164 |
| Msa0387470 | MtrunA17_Chr5g0402101 | 36.364 | 110 | 67 | 2 | 118 | 225 | 107 | 215 | 1.58e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387470 | AT3G11400.1 | 60.163 | 123 | 48 | 1 | 104 | 225 | 172 | 294 | 1.41e-44 | 151 |
| Msa0387470 | AT3G11400.2 | 60.163 | 123 | 48 | 1 | 104 | 225 | 199 | 321 | 3.50e-44 | 151 |
| Msa0387470 | AT5G06000.1 | 59.821 | 112 | 44 | 1 | 117 | 227 | 178 | 289 | 4.57e-40 | 140 |
Find 62 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACAGGTTCTATGTATCTT+AGG | 0.176986 | 3_1:+91417891 | Msa0387470:three_prime_UTR |
| TTCCCTTCATAGGTTGTTCT+TGG | 0.212669 | 3_1:-91417760 | Msa0387480:intron |
| TTCTAAATGCTAAACGATAT+TGG | 0.270250 | 3_1:-91417871 | Msa0387480:intron |
| ACCATTAGGGTTTGGGTGTT+CGG | 0.275954 | 3_1:-91416562 | None:intergenic |
| CGATATTGGAAATTGATAAA+AGG | 0.281581 | 3_1:-91417857 | Msa0387480:intron |
| TATGAGCTATTCAGTTGTTT+TGG | 0.281596 | 3_1:+91417577 | Msa0387470:CDS |
| CCATTAGGGTTTGGGTGTTC+GGG | 0.285720 | 3_1:-91416561 | None:intergenic |
| GACGATGGGTGGTTCATATC+AGG | 0.288856 | 3_1:+91417396 | Msa0387470:CDS |
| TCCCTTCATAGGTTGTTCTT+GGG | 0.309125 | 3_1:-91417759 | Msa0387480:intron |
| TCCATACGAAAAGGTCGTTT+TGG | 0.309321 | 3_1:-91417358 | None:intergenic |
| AGCTACAAATCAAATCAAAT+TGG | 0.342976 | 3_1:+91416450 | Msa0387470:CDS |
| AGAGAAGGACCATTAGGGTT+TGG | 0.347093 | 3_1:-91416570 | None:intergenic |
| AAGTCTCCCATTCCCTTCAT+AGG | 0.363517 | 3_1:-91417770 | Msa0387480:intron |
| GAGAGAGAGAAGGACCATTA+GGG | 0.366798 | 3_1:-91416575 | None:intergenic |
| CCTGCCTTGAGAGGTGGTGC+AGG | 0.367808 | 3_1:+91417463 | Msa0387470:CDS |
| GAGAAGGACCATTAGGGTTT+GGG | 0.373792 | 3_1:-91416569 | None:intergenic |
| TTTGAAGAAAACTCTAACTT+GGG | 0.381459 | 3_1:-91416396 | None:intergenic |
| TAAGAAACATCTACATGAAC+TGG | 0.390855 | 3_1:-91416510 | None:intergenic |
| TCATAGGTTGTTCTTGGGGT+GGG | 0.395702 | 3_1:-91417754 | Msa0387480:intron |
| GGTGGTGCAGGGAGGTCTGT+AGG | 0.417455 | 3_1:+91417475 | Msa0387470:CDS |
| CTACAATAATCTCATCTTGA+AGG | 0.422143 | 3_1:+91417723 | Msa0387470:CDS |
| TCTTGCTTAATTTATGTACA+TGG | 0.428508 | 3_1:-91417942 | Msa0387480:intron |
| AACAGGTTCTATGTATCTTA+GGG | 0.432554 | 3_1:+91417892 | Msa0387470:three_prime_UTR |
| CTGAATAGCTCATACAAATC+AGG | 0.437655 | 3_1:-91417568 | None:intergenic |
| CCCGAACACCCAAACCCTAA+TGG | 0.444115 | 3_1:+91416561 | Msa0387470:CDS |
| TATCGTTTAGCATTTAGAAC+AGG | 0.450763 | 3_1:+91417875 | Msa0387470:three_prime_UTR |
| TTCATAGGTTGTTCTTGGGG+TGG | 0.454699 | 3_1:-91417755 | Msa0387480:intron |
| TCAAATTGGTGAGGAAAGAA+TGG | 0.467811 | 3_1:+91416464 | Msa0387470:CDS |
| ATCTCATCTTGAAGGTTGAA+TGG | 0.477563 | 3_1:+91417731 | Msa0387470:CDS |
| ACCCCAAGAACAACCTATGA+AGG | 0.483719 | 3_1:+91417757 | Msa0387470:CDS |
| CCTCATGTTCTTCGAGAGGT+TGG | 0.484277 | 3_1:-91417542 | None:intergenic |
| GCTATGTCACCTTTGTCAGC+AGG | 0.494544 | 3_1:+91417659 | Msa0387470:CDS |
| CCCTTCATAGGTTGTTCTTG+GGG | 0.495515 | 3_1:-91417758 | Msa0387480:intron |
| AGAACAACCTATGAAGGGAA+TGG | 0.500669 | 3_1:+91417763 | Msa0387470:CDS |
| GAACAACCTATGAAGGGAAT+GGG | 0.506327 | 3_1:+91417764 | Msa0387470:CDS |
| CCTGCACCACCTCTCAAGGC+AGG | 0.512096 | 3_1:-91417463 | None:intergenic |
| CTGCCTTGAGAGGTGGTGCA+GGG | 0.512726 | 3_1:+91417464 | Msa0387470:CDS |
| GTGGTGCAGGGAGGTCTGTA+GGG | 0.520790 | 3_1:+91417476 | Msa0387470:CDS |
| TAAACAGGTTCAATAAATGA+TGG | 0.523431 | 3_1:+91417325 | Msa0387470:intron |
| GTGATGCATTCCATACGAAA+AGG | 0.547529 | 3_1:-91417367 | None:intergenic |
| CCTCCCTGCACCACCTCTCA+AGG | 0.556170 | 3_1:-91417467 | None:intergenic |
| AGCATCTTCCCTGCTGACAA+AGG | 0.563882 | 3_1:-91417668 | Msa0387480:CDS |
| TTGATAAAAGGAAAGACAGA+AGG | 0.569974 | 3_1:-91417845 | Msa0387480:intron |
| TATGTAGCTCCTGCCTTGAG+AGG | 0.579522 | 3_1:+91417454 | Msa0387470:CDS |
| GAACAATGAGATTTACGTGC+GGG | 0.586065 | 3_1:+91417516 | Msa0387470:CDS |
| GTAGCTCCTGCCTTGAGAGG+TGG | 0.590563 | 3_1:+91417457 | Msa0387470:CDS |
| CTATGTCACCTTTGTCAGCA+GGG | 0.596701 | 3_1:+91417660 | Msa0387470:CDS |
| ACGATGGGTGGTTCATATCA+GGG | 0.596881 | 3_1:+91417397 | Msa0387470:CDS |
| AGAGCTGTTAACAAACTCAA+TGG | 0.598173 | 3_1:+91417694 | Msa0387470:CDS |
| GCTCCCTCATGTTCTTCGAG+AGG | 0.602227 | 3_1:-91417546 | None:intergenic |
| TAGGGTCAGACATGAGGCAG+AGG | 0.607730 | 3_1:+91417494 | Msa0387470:CDS |
| CCTTGAGAGGTGGTGCAGGG+AGG | 0.610063 | 3_1:+91417467 | Msa0387470:CDS |
| CCCCAAGAACAACCTATGAA+GGG | 0.616746 | 3_1:+91417758 | Msa0387470:CDS |
| GGAGCTACATATACACCCCT+AGG | 0.622184 | 3_1:-91417442 | None:intergenic |
| GGTCTGTAGGGTCAGACATG+AGG | 0.626411 | 3_1:+91417488 | Msa0387470:CDS |
| CAAATCAAATCAAATTGGTG+AGG | 0.628896 | 3_1:+91416455 | Msa0387470:CDS |
| CCAACCTCTCGAAGAACATG+AGG | 0.632828 | 3_1:+91417542 | Msa0387470:CDS |
| TATACACCCCTAGGAACGAA+TGG | 0.642906 | 3_1:-91417433 | None:intergenic |
| AAAATACTGACATGTGTAGG+GGG | 0.649056 | 3_1:+91417632 | Msa0387470:CDS |
| CAACCTCTCGAAGAACATGA+GGG | 0.663029 | 3_1:+91417543 | Msa0387470:CDS |
| GGAAAGAATGGATCGACAAG+CGG | 0.664958 | 3_1:+91416476 | Msa0387470:CDS |
| GGAACAATGAGATTTACGTG+CGG | 0.721225 | 3_1:+91417515 | Msa0387470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAATCCAACAATTTTTA+GGG | - | chr3_1:91416692-91416711 | None:intergenic | 15.0% |
| !!! | AATTAAATCCAACAATTTTT+AGG | - | chr3_1:91416693-91416712 | None:intergenic | 15.0% |
| !!! | ATTAAATCCAACAATTTTTA+GGG | - | chr3_1:91416692-91416711 | None:intergenic | 15.0% |
| !!! | AATTAAATCCAACAATTTTT+AGG | - | chr3_1:91416693-91416712 | None:intergenic | 15.0% |
| !!! | GTGAAAATTTTGTTGTTTTA+GGG | - | chr3_1:91416371-91416390 | None:intergenic | 20.0% |
| !!! | TGTGAAAATTTTGTTGTTTT+AGG | - | chr3_1:91416372-91416391 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCCATTTGAATCT+AGG | + | chr3_1:91416626-91416645 | Msa0387470:intron | 20.0% |
| !! | ATAAAAAACCTAGATTCAAA+TGG | - | chr3_1:91416637-91416656 | None:intergenic | 20.0% |
| !! | ACTGTTAACTTATTTATCAT+CGG | - | chr3_1:91417170-91417189 | None:intergenic | 20.0% |
| !!! | GTGAAAATTTTGTTGTTTTA+GGG | - | chr3_1:91416371-91416390 | None:intergenic | 20.0% |
| !!! | TGTGAAAATTTTGTTGTTTT+AGG | - | chr3_1:91416372-91416391 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCCATTTGAATCT+AGG | + | chr3_1:91416626-91416645 | Msa0387470:intron | 20.0% |
| !! | ATAAAAAACCTAGATTCAAA+TGG | - | chr3_1:91416637-91416656 | None:intergenic | 20.0% |
| !! | ACTGTTAACTTATTTATCAT+CGG | - | chr3_1:91417170-91417189 | None:intergenic | 20.0% |
| ! | TTTGAAGAAAACTCTAACTT+GGG | - | chr3_1:91416399-91416418 | None:intergenic | 25.0% |
| !!! | TTTTGAAGAAAACTCTAACT+TGG | - | chr3_1:91416400-91416419 | None:intergenic | 25.0% |
| ! | AGCTACAAATCAAATCAAAT+TGG | + | chr3_1:91416450-91416469 | Msa0387470:CDS | 25.0% |
| ! | TATTGAACCCTAAAAATTGT+TGG | + | chr3_1:91416682-91416701 | Msa0387470:intron | 25.0% |
| ! | TAGATAGATAGATAGTTGTT+TGG | + | chr3_1:91416723-91416742 | Msa0387470:intron | 25.0% |
| ! | TTGTAACACACAATATTGAT+TGG | + | chr3_1:91416939-91416958 | Msa0387470:intron | 25.0% |
| !! | TGCATGAAATTTCTTACTTT+TGG | + | chr3_1:91417035-91417054 | Msa0387470:intron | 25.0% |
| !!! | GCATGAAATTTCTTACTTTT+GGG | + | chr3_1:91417036-91417055 | Msa0387470:intron | 25.0% |
| !!! | CATGAAATTTCTTACTTTTG+GGG | + | chr3_1:91417037-91417056 | Msa0387470:intron | 25.0% |
| !!! | ATGAAATTTCTTACTTTTGG+GGG | + | chr3_1:91417038-91417057 | Msa0387470:intron | 25.0% |
| ! | CTTCTATAACAAATCATATG+TGG | + | chr3_1:91417201-91417220 | Msa0387470:intron | 25.0% |
| ! | GAGTTATCATGATATTGAAA+GGG | - | chr3_1:91417287-91417306 | None:intergenic | 25.0% |
| ! | AGAGTTATCATGATATTGAA+AGG | - | chr3_1:91417288-91417307 | None:intergenic | 25.0% |
| ! | TAAACAGGTTCAATAAATGA+TGG | + | chr3_1:91417325-91417344 | Msa0387470:intron | 25.0% |
| ! | ATAAAAATACTGACATGTGT+AGG | + | chr3_1:91417629-91417648 | Msa0387470:CDS | 25.0% |
| ! | TAAAAATACTGACATGTGTA+GGG | + | chr3_1:91417630-91417649 | Msa0387470:CDS | 25.0% |
| ! | CGATATTGGAAATTGATAAA+AGG | - | chr3_1:91417860-91417879 | Msa0387480:intron | 25.0% |
| ! | TTCTAAATGCTAAACGATAT+TGG | - | chr3_1:91417874-91417893 | Msa0387480:intron | 25.0% |
| ! | TCTTGCTTAATTTATGTACA+TGG | - | chr3_1:91417945-91417964 | Msa0387480:intron | 25.0% |
| ! | TTTGAAGAAAACTCTAACTT+GGG | - | chr3_1:91416399-91416418 | None:intergenic | 25.0% |
| !!! | TTTTGAAGAAAACTCTAACT+TGG | - | chr3_1:91416400-91416419 | None:intergenic | 25.0% |
| ! | AGCTACAAATCAAATCAAAT+TGG | + | chr3_1:91416450-91416469 | Msa0387470:CDS | 25.0% |
| ! | TATTGAACCCTAAAAATTGT+TGG | + | chr3_1:91416682-91416701 | Msa0387470:intron | 25.0% |
| ! | TAGATAGATAGATAGTTGTT+TGG | + | chr3_1:91416723-91416742 | Msa0387470:intron | 25.0% |
| ! | TTGTAACACACAATATTGAT+TGG | + | chr3_1:91416939-91416958 | Msa0387470:intron | 25.0% |
| !! | TGCATGAAATTTCTTACTTT+TGG | + | chr3_1:91417035-91417054 | Msa0387470:intron | 25.0% |
| !!! | GCATGAAATTTCTTACTTTT+GGG | + | chr3_1:91417036-91417055 | Msa0387470:intron | 25.0% |
| !!! | CATGAAATTTCTTACTTTTG+GGG | + | chr3_1:91417037-91417056 | Msa0387470:intron | 25.0% |
| !!! | ATGAAATTTCTTACTTTTGG+GGG | + | chr3_1:91417038-91417057 | Msa0387470:intron | 25.0% |
| ! | CTTCTATAACAAATCATATG+TGG | + | chr3_1:91417201-91417220 | Msa0387470:intron | 25.0% |
| ! | GAGTTATCATGATATTGAAA+GGG | - | chr3_1:91417287-91417306 | None:intergenic | 25.0% |
| ! | AGAGTTATCATGATATTGAA+AGG | - | chr3_1:91417288-91417307 | None:intergenic | 25.0% |
| ! | TAAACAGGTTCAATAAATGA+TGG | + | chr3_1:91417325-91417344 | Msa0387470:intron | 25.0% |
| ! | ATAAAAATACTGACATGTGT+AGG | + | chr3_1:91417629-91417648 | Msa0387470:CDS | 25.0% |
| ! | TAAAAATACTGACATGTGTA+GGG | + | chr3_1:91417630-91417649 | Msa0387470:CDS | 25.0% |
| ! | CGATATTGGAAATTGATAAA+AGG | - | chr3_1:91417860-91417879 | Msa0387480:intron | 25.0% |
| ! | TTCTAAATGCTAAACGATAT+TGG | - | chr3_1:91417874-91417893 | Msa0387480:intron | 25.0% |
| ! | TCTTGCTTAATTTATGTACA+TGG | - | chr3_1:91417945-91417964 | Msa0387480:intron | 25.0% |
| CAAATCAAATCAAATTGGTG+AGG | + | chr3_1:91416455-91416474 | Msa0387470:CDS | 30.0% | |
| TAAGAAACATCTACATGAAC+TGG | - | chr3_1:91416513-91416532 | None:intergenic | 30.0% | |
| ! | ACCTTGCACAATTTTATACT+TGG | + | chr3_1:91416853-91416872 | Msa0387470:intron | 30.0% |
| ! | CCTTGCACAATTTTATACTT+GGG | + | chr3_1:91416854-91416873 | Msa0387470:intron | 30.0% |
| ! | ACACACAATATTGATTGGAT+TGG | + | chr3_1:91416944-91416963 | Msa0387470:intron | 30.0% |
| !!! | TAGGAACGAATGGTTTTTTT+GGG | - | chr3_1:91417426-91417445 | None:intergenic | 30.0% |
| AAAAAAACCATTCGTTCCTA+GGG | + | chr3_1:91417426-91417445 | Msa0387470:CDS | 30.0% | |
| ! | TATGAGCTATTCAGTTGTTT+TGG | + | chr3_1:91417577-91417596 | Msa0387470:CDS | 30.0% |
| AAAAATACTGACATGTGTAG+GGG | + | chr3_1:91417631-91417650 | Msa0387470:CDS | 30.0% | |
| CTACAATAATCTCATCTTGA+AGG | + | chr3_1:91417723-91417742 | Msa0387470:CDS | 30.0% | |
| TTGATAAAAGGAAAGACAGA+AGG | - | chr3_1:91417848-91417867 | Msa0387480:intron | 30.0% | |
| ! | TATCGTTTAGCATTTAGAAC+AGG | + | chr3_1:91417875-91417894 | Msa0387470:three_prime_UTR | 30.0% |
| AACAGGTTCTATGTATCTTA+GGG | + | chr3_1:91417892-91417911 | Msa0387470:three_prime_UTR | 30.0% | |
| CAAATCAAATCAAATTGGTG+AGG | + | chr3_1:91416455-91416474 | Msa0387470:CDS | 30.0% | |
| TAAGAAACATCTACATGAAC+TGG | - | chr3_1:91416513-91416532 | None:intergenic | 30.0% | |
| ! | ACCTTGCACAATTTTATACT+TGG | + | chr3_1:91416853-91416872 | Msa0387470:intron | 30.0% |
| ! | CCTTGCACAATTTTATACTT+GGG | + | chr3_1:91416854-91416873 | Msa0387470:intron | 30.0% |
| ! | ACACACAATATTGATTGGAT+TGG | + | chr3_1:91416944-91416963 | Msa0387470:intron | 30.0% |
| !!! | TAGGAACGAATGGTTTTTTT+GGG | - | chr3_1:91417426-91417445 | None:intergenic | 30.0% |
| AAAAAAACCATTCGTTCCTA+GGG | + | chr3_1:91417426-91417445 | Msa0387470:CDS | 30.0% | |
| ! | TATGAGCTATTCAGTTGTTT+TGG | + | chr3_1:91417577-91417596 | Msa0387470:CDS | 30.0% |
| AAAAATACTGACATGTGTAG+GGG | + | chr3_1:91417631-91417650 | Msa0387470:CDS | 30.0% | |
| CTACAATAATCTCATCTTGA+AGG | + | chr3_1:91417723-91417742 | Msa0387470:CDS | 30.0% | |
| TTGATAAAAGGAAAGACAGA+AGG | - | chr3_1:91417848-91417867 | Msa0387480:intron | 30.0% | |
| ! | TATCGTTTAGCATTTAGAAC+AGG | + | chr3_1:91417875-91417894 | Msa0387470:three_prime_UTR | 30.0% |
| AACAGGTTCTATGTATCTTA+GGG | + | chr3_1:91417892-91417911 | Msa0387470:three_prime_UTR | 30.0% | |
| TCAAATTGGTGAGGAAAGAA+TGG | + | chr3_1:91416464-91416483 | Msa0387470:CDS | 35.0% | |
| ! | ATAGTGTAGCTTACTAGCTT+TGG | - | chr3_1:91416758-91416777 | None:intergenic | 35.0% |
| TGCAAACAAATCACAATGCT+TGG | + | chr3_1:91416791-91416810 | Msa0387470:intron | 35.0% | |
| CCCAAGTATAAAATTGTGCA+AGG | - | chr3_1:91416857-91416876 | None:intergenic | 35.0% | |
| ATCTTGCTGCTATTGTAAAC+AGG | + | chr3_1:91417310-91417329 | Msa0387470:intron | 35.0% | |
| !!! | CTAGGAACGAATGGTTTTTT+TGG | - | chr3_1:91417427-91417446 | None:intergenic | 35.0% |
| CAAAAAAACCATTCGTTCCT+AGG | + | chr3_1:91417425-91417444 | Msa0387470:CDS | 35.0% | |
| AAAAAACCATTCGTTCCTAG+GGG | + | chr3_1:91417427-91417446 | Msa0387470:CDS | 35.0% | |
| CTGAATAGCTCATACAAATC+AGG | - | chr3_1:91417571-91417590 | None:intergenic | 35.0% | |
| AAAATACTGACATGTGTAGG+GGG | + | chr3_1:91417632-91417651 | Msa0387470:CDS | 35.0% | |
| AGAGCTGTTAACAAACTCAA+TGG | + | chr3_1:91417694-91417713 | Msa0387470:CDS | 35.0% | |
| ATCTCATCTTGAAGGTTGAA+TGG | + | chr3_1:91417731-91417750 | Msa0387470:CDS | 35.0% | |
| GAACAGGTTCTATGTATCTT+AGG | + | chr3_1:91417891-91417910 | Msa0387470:three_prime_UTR | 35.0% | |
| TCAAATTGGTGAGGAAAGAA+TGG | + | chr3_1:91416464-91416483 | Msa0387470:CDS | 35.0% | |
| ! | ATAGTGTAGCTTACTAGCTT+TGG | - | chr3_1:91416758-91416777 | None:intergenic | 35.0% |
| TGCAAACAAATCACAATGCT+TGG | + | chr3_1:91416791-91416810 | Msa0387470:intron | 35.0% | |
| CCCAAGTATAAAATTGTGCA+AGG | - | chr3_1:91416857-91416876 | None:intergenic | 35.0% | |
| ATCTTGCTGCTATTGTAAAC+AGG | + | chr3_1:91417310-91417329 | Msa0387470:intron | 35.0% | |
| !!! | CTAGGAACGAATGGTTTTTT+TGG | - | chr3_1:91417427-91417446 | None:intergenic | 35.0% |
| CAAAAAAACCATTCGTTCCT+AGG | + | chr3_1:91417425-91417444 | Msa0387470:CDS | 35.0% | |
| AAAAAACCATTCGTTCCTAG+GGG | + | chr3_1:91417427-91417446 | Msa0387470:CDS | 35.0% | |
| CTGAATAGCTCATACAAATC+AGG | - | chr3_1:91417571-91417590 | None:intergenic | 35.0% | |
| AAAATACTGACATGTGTAGG+GGG | + | chr3_1:91417632-91417651 | Msa0387470:CDS | 35.0% | |
| AGAGCTGTTAACAAACTCAA+TGG | + | chr3_1:91417694-91417713 | Msa0387470:CDS | 35.0% | |
| ATCTCATCTTGAAGGTTGAA+TGG | + | chr3_1:91417731-91417750 | Msa0387470:CDS | 35.0% | |
| GAACAGGTTCTATGTATCTT+AGG | + | chr3_1:91417891-91417910 | Msa0387470:three_prime_UTR | 35.0% | |
| ! | TCCAAAACGACCTTTTCGTA+TGG | + | chr3_1:91417357-91417376 | Msa0387470:CDS | 40.0% |
| ! | TCCATACGAAAAGGTCGTTT+TGG | - | chr3_1:91417361-91417380 | None:intergenic | 40.0% |
| GTGATGCATTCCATACGAAA+AGG | - | chr3_1:91417370-91417389 | None:intergenic | 40.0% | |
| !!! | ATGCATCACTTTTGAGACGA+TGG | + | chr3_1:91417381-91417400 | Msa0387470:CDS | 40.0% |
| !!! | TGCATCACTTTTGAGACGAT+GGG | + | chr3_1:91417382-91417401 | Msa0387470:CDS | 40.0% |
| GGAACAATGAGATTTACGTG+CGG | + | chr3_1:91417515-91417534 | Msa0387470:CDS | 40.0% | |
| GAACAATGAGATTTACGTGC+GGG | + | chr3_1:91417516-91417535 | Msa0387470:CDS | 40.0% | |
| TCCCTTCATAGGTTGTTCTT+GGG | - | chr3_1:91417762-91417781 | Msa0387480:intron | 40.0% | |
| TTCCCTTCATAGGTTGTTCT+TGG | - | chr3_1:91417763-91417782 | Msa0387480:intron | 40.0% | |
| AGAACAACCTATGAAGGGAA+TGG | + | chr3_1:91417763-91417782 | Msa0387470:CDS | 40.0% | |
| GAACAACCTATGAAGGGAAT+GGG | + | chr3_1:91417764-91417783 | Msa0387470:CDS | 40.0% | |
| ! | TCCAAAACGACCTTTTCGTA+TGG | + | chr3_1:91417357-91417376 | Msa0387470:CDS | 40.0% |
| ! | TCCATACGAAAAGGTCGTTT+TGG | - | chr3_1:91417361-91417380 | None:intergenic | 40.0% |
| GTGATGCATTCCATACGAAA+AGG | - | chr3_1:91417370-91417389 | None:intergenic | 40.0% | |
| !!! | ATGCATCACTTTTGAGACGA+TGG | + | chr3_1:91417381-91417400 | Msa0387470:CDS | 40.0% |
| !!! | TGCATCACTTTTGAGACGAT+GGG | + | chr3_1:91417382-91417401 | Msa0387470:CDS | 40.0% |
| GGAACAATGAGATTTACGTG+CGG | + | chr3_1:91417515-91417534 | Msa0387470:CDS | 40.0% | |
| GAACAATGAGATTTACGTGC+GGG | + | chr3_1:91417516-91417535 | Msa0387470:CDS | 40.0% | |
| TCCCTTCATAGGTTGTTCTT+GGG | - | chr3_1:91417762-91417781 | Msa0387480:intron | 40.0% | |
| TTCCCTTCATAGGTTGTTCT+TGG | - | chr3_1:91417763-91417782 | Msa0387480:intron | 40.0% | |
| AGAACAACCTATGAAGGGAA+TGG | + | chr3_1:91417763-91417782 | Msa0387470:CDS | 40.0% | |
| GAACAACCTATGAAGGGAAT+GGG | + | chr3_1:91417764-91417783 | Msa0387470:CDS | 40.0% | |
| GGAAAGAATGGATCGACAAG+CGG | + | chr3_1:91416476-91416495 | Msa0387470:CDS | 45.0% | |
| ACCATTAGGGTTTGGGTGTT+CGG | - | chr3_1:91416565-91416584 | None:intergenic | 45.0% | |
| GAGAAGGACCATTAGGGTTT+GGG | - | chr3_1:91416572-91416591 | None:intergenic | 45.0% | |
| AGAGAAGGACCATTAGGGTT+TGG | - | chr3_1:91416573-91416592 | None:intergenic | 45.0% | |
| GAGAGAGAGAAGGACCATTA+GGG | - | chr3_1:91416578-91416597 | None:intergenic | 45.0% | |
| AGAGAGAGAGAAGGACCATT+AGG | - | chr3_1:91416579-91416598 | None:intergenic | 45.0% | |
| !!! | ATCACTTTTGAGACGATGGG+TGG | + | chr3_1:91417385-91417404 | Msa0387470:CDS | 45.0% |
| ACGATGGGTGGTTCATATCA+GGG | + | chr3_1:91417397-91417416 | Msa0387470:CDS | 45.0% | |
| TATACACCCCTAGGAACGAA+TGG | - | chr3_1:91417436-91417455 | None:intergenic | 45.0% | |
| CAACCTCTCGAAGAACATGA+GGG | + | chr3_1:91417543-91417562 | Msa0387470:CDS | 45.0% | |
| CTATGTCACCTTTGTCAGCA+GGG | + | chr3_1:91417660-91417679 | Msa0387470:CDS | 45.0% | |
| TCATAGGTTGTTCTTGGGGT+GGG | - | chr3_1:91417757-91417776 | Msa0387480:intron | 45.0% | |
| TTCATAGGTTGTTCTTGGGG+TGG | - | chr3_1:91417758-91417777 | Msa0387480:intron | 45.0% | |
| ACCCCAAGAACAACCTATGA+AGG | + | chr3_1:91417757-91417776 | Msa0387470:CDS | 45.0% | |
| CCCTTCATAGGTTGTTCTTG+GGG | - | chr3_1:91417761-91417780 | Msa0387480:intron | 45.0% | |
| CCCCAAGAACAACCTATGAA+GGG | + | chr3_1:91417758-91417777 | Msa0387470:CDS | 45.0% | |
| AAGTCTCCCATTCCCTTCAT+AGG | - | chr3_1:91417773-91417792 | Msa0387480:intron | 45.0% | |
| GGAAAGAATGGATCGACAAG+CGG | + | chr3_1:91416476-91416495 | Msa0387470:CDS | 45.0% | |
| ACCATTAGGGTTTGGGTGTT+CGG | - | chr3_1:91416565-91416584 | None:intergenic | 45.0% | |
| GAGAAGGACCATTAGGGTTT+GGG | - | chr3_1:91416572-91416591 | None:intergenic | 45.0% | |
| AGAGAAGGACCATTAGGGTT+TGG | - | chr3_1:91416573-91416592 | None:intergenic | 45.0% | |
| GAGAGAGAGAAGGACCATTA+GGG | - | chr3_1:91416578-91416597 | None:intergenic | 45.0% | |
| AGAGAGAGAGAAGGACCATT+AGG | - | chr3_1:91416579-91416598 | None:intergenic | 45.0% | |
| !!! | ATCACTTTTGAGACGATGGG+TGG | + | chr3_1:91417385-91417404 | Msa0387470:CDS | 45.0% |
| ACGATGGGTGGTTCATATCA+GGG | + | chr3_1:91417397-91417416 | Msa0387470:CDS | 45.0% | |
| TATACACCCCTAGGAACGAA+TGG | - | chr3_1:91417436-91417455 | None:intergenic | 45.0% | |
| CAACCTCTCGAAGAACATGA+GGG | + | chr3_1:91417543-91417562 | Msa0387470:CDS | 45.0% | |
| CTATGTCACCTTTGTCAGCA+GGG | + | chr3_1:91417660-91417679 | Msa0387470:CDS | 45.0% | |
| TCATAGGTTGTTCTTGGGGT+GGG | - | chr3_1:91417757-91417776 | Msa0387480:intron | 45.0% | |
| TTCATAGGTTGTTCTTGGGG+TGG | - | chr3_1:91417758-91417777 | Msa0387480:intron | 45.0% | |
| ACCCCAAGAACAACCTATGA+AGG | + | chr3_1:91417757-91417776 | Msa0387470:CDS | 45.0% | |
| CCCTTCATAGGTTGTTCTTG+GGG | - | chr3_1:91417761-91417780 | Msa0387480:intron | 45.0% | |
| CCCCAAGAACAACCTATGAA+GGG | + | chr3_1:91417758-91417777 | Msa0387470:CDS | 45.0% | |
| AAGTCTCCCATTCCCTTCAT+AGG | - | chr3_1:91417773-91417792 | Msa0387480:intron | 45.0% | |
| CCATTAGGGTTTGGGTGTTC+GGG | - | chr3_1:91416564-91416583 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+AGG | - | chr3_1:91416588-91416607 | None:intergenic | 50.0% | |
| GACGATGGGTGGTTCATATC+AGG | + | chr3_1:91417396-91417415 | Msa0387470:CDS | 50.0% | |
| GGAGCTACATATACACCCCT+AGG | - | chr3_1:91417445-91417464 | None:intergenic | 50.0% | |
| TATGTAGCTCCTGCCTTGAG+AGG | + | chr3_1:91417454-91417473 | Msa0387470:CDS | 50.0% | |
| CCTCATGTTCTTCGAGAGGT+TGG | - | chr3_1:91417545-91417564 | None:intergenic | 50.0% | |
| CCAACCTCTCGAAGAACATG+AGG | + | chr3_1:91417542-91417561 | Msa0387470:CDS | 50.0% | |
| GCTATGTCACCTTTGTCAGC+AGG | + | chr3_1:91417659-91417678 | Msa0387470:CDS | 50.0% | |
| AGCATCTTCCCTGCTGACAA+AGG | - | chr3_1:91417671-91417690 | Msa0387480:CDS | 50.0% | |
| CCATTAGGGTTTGGGTGTTC+GGG | - | chr3_1:91416564-91416583 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+AGG | - | chr3_1:91416588-91416607 | None:intergenic | 50.0% | |
| GACGATGGGTGGTTCATATC+AGG | + | chr3_1:91417396-91417415 | Msa0387470:CDS | 50.0% | |
| GGAGCTACATATACACCCCT+AGG | - | chr3_1:91417445-91417464 | None:intergenic | 50.0% | |
| TATGTAGCTCCTGCCTTGAG+AGG | + | chr3_1:91417454-91417473 | Msa0387470:CDS | 50.0% | |
| CCTCATGTTCTTCGAGAGGT+TGG | - | chr3_1:91417545-91417564 | None:intergenic | 50.0% | |
| CCAACCTCTCGAAGAACATG+AGG | + | chr3_1:91417542-91417561 | Msa0387470:CDS | 50.0% | |
| GCTATGTCACCTTTGTCAGC+AGG | + | chr3_1:91417659-91417678 | Msa0387470:CDS | 50.0% | |
| AGCATCTTCCCTGCTGACAA+AGG | - | chr3_1:91417671-91417690 | Msa0387480:CDS | 50.0% | |
| CCCGAACACCCAAACCCTAA+TGG | + | chr3_1:91416561-91416580 | Msa0387470:CDS | 55.0% | |
| GGTCTGTAGGGTCAGACATG+AGG | + | chr3_1:91417488-91417507 | Msa0387470:CDS | 55.0% | |
| TAGGGTCAGACATGAGGCAG+AGG | + | chr3_1:91417494-91417513 | Msa0387470:CDS | 55.0% | |
| GCTCCCTCATGTTCTTCGAG+AGG | - | chr3_1:91417549-91417568 | None:intergenic | 55.0% | |
| ACTGACATGTGTAGGGGGTG+TGG | + | chr3_1:91417637-91417656 | Msa0387470:CDS | 55.0% | |
| CCCGAACACCCAAACCCTAA+TGG | + | chr3_1:91416561-91416580 | Msa0387470:CDS | 55.0% | |
| GGTCTGTAGGGTCAGACATG+AGG | + | chr3_1:91417488-91417507 | Msa0387470:CDS | 55.0% | |
| TAGGGTCAGACATGAGGCAG+AGG | + | chr3_1:91417494-91417513 | Msa0387470:CDS | 55.0% | |
| GCTCCCTCATGTTCTTCGAG+AGG | - | chr3_1:91417549-91417568 | None:intergenic | 55.0% | |
| ACTGACATGTGTAGGGGGTG+TGG | + | chr3_1:91417637-91417656 | Msa0387470:CDS | 55.0% | |
| GTAGCTCCTGCCTTGAGAGG+TGG | + | chr3_1:91417457-91417476 | Msa0387470:CDS | 60.0% | |
| CTGCCTTGAGAGGTGGTGCA+GGG | + | chr3_1:91417464-91417483 | Msa0387470:CDS | 60.0% | |
| GTGGTGCAGGGAGGTCTGTA+GGG | + | chr3_1:91417476-91417495 | Msa0387470:CDS | 60.0% | |
| GTAGCTCCTGCCTTGAGAGG+TGG | + | chr3_1:91417457-91417476 | Msa0387470:CDS | 60.0% | |
| CTGCCTTGAGAGGTGGTGCA+GGG | + | chr3_1:91417464-91417483 | Msa0387470:CDS | 60.0% | |
| GTGGTGCAGGGAGGTCTGTA+GGG | + | chr3_1:91417476-91417495 | Msa0387470:CDS | 60.0% | |
| CCTGCACCACCTCTCAAGGC+AGG | - | chr3_1:91417466-91417485 | None:intergenic | 65.0% | |
| CCTGCCTTGAGAGGTGGTGC+AGG | + | chr3_1:91417463-91417482 | Msa0387470:CDS | 65.0% | |
| CCTCCCTGCACCACCTCTCA+AGG | - | chr3_1:91417470-91417489 | None:intergenic | 65.0% | |
| CCTTGAGAGGTGGTGCAGGG+AGG | + | chr3_1:91417467-91417486 | Msa0387470:CDS | 65.0% | |
| GGTGGTGCAGGGAGGTCTGT+AGG | + | chr3_1:91417475-91417494 | Msa0387470:CDS | 65.0% | |
| CCTGCACCACCTCTCAAGGC+AGG | - | chr3_1:91417466-91417485 | None:intergenic | 65.0% | |
| CCTGCCTTGAGAGGTGGTGC+AGG | + | chr3_1:91417463-91417482 | Msa0387470:CDS | 65.0% | |
| CCTCCCTGCACCACCTCTCA+AGG | - | chr3_1:91417470-91417489 | None:intergenic | 65.0% | |
| CCTTGAGAGGTGGTGCAGGG+AGG | + | chr3_1:91417467-91417486 | Msa0387470:CDS | 65.0% | |
| GGTGGTGCAGGGAGGTCTGT+AGG | + | chr3_1:91417475-91417494 | Msa0387470:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 91416348 | 91417986 | 91416348 | ID=Msa0387470;Name=Msa0387470 |
| chr3_1 | mRNA | 91416348 | 91417986 | 91416348 | ID=Msa0387470-mRNA-1;Parent=Msa0387470;Name=Msa0387470-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|1|1|1|1|2|188|233 |
| chr3_1 | exon | 91416348 | 91416582 | 91416348 | ID=Msa0387470-mRNA-1:exon:25452;Parent=Msa0387470-mRNA-1 |
| chr3_1 | exon | 91417332 | 91417986 | 91417332 | ID=Msa0387470-mRNA-1:exon:25453;Parent=Msa0387470-mRNA-1 |
| chr3_1 | CDS | 91416348 | 91416582 | 91416348 | ID=Msa0387470-mRNA-1:cds;Parent=Msa0387470-mRNA-1 |
| chr3_1 | CDS | 91417332 | 91417798 | 91417332 | ID=Msa0387470-mRNA-1:cds;Parent=Msa0387470-mRNA-1 |
| chr3_1 | three_prime_UTR | 91417799 | 91417986 | 91417799 | ID=Msa0387470-mRNA-1:three_prime_utr;Parent=Msa0387470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
