AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0523680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0523680 MtrunA17_Chr3g0144321 97.030 101 2 1 1 101 1 100 6.97e-68 198
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0523680 AT2G33585.1 69.792 96 27 1 1 96 98 191 1.68e-46 147
Msa0523680 AT2G33585.2 74.545 55 14 0 1 55 98 152 5.56e-28 99.8

Find 48 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAACAAAGACAAATCATTT+AGG 0.215755 3_4:-77110616 Msa0523680:CDS
CAGGTTACTGGTTTGATATA+TGG 0.242969 3_4:-77110647 Msa0523680:CDS
GAACCCTAGCTTATTATCTT+TGG 0.258975 3_4:-77110869 Msa0523680:CDS
AAAATACTGTATTACTATTA+AGG 0.261649 3_4:-77106575 Msa0523680:three_prime_UTR
GAGGAAGCAACCTCGCTTCT+TGG 0.300549 3_4:-77110902 Msa0523680:CDS
ACTCTTCAATGGCGAGTAAC+TGG 0.320203 3_4:-77110983 Msa0523680:exon
CAACAAAGACAAATCATTTA+GGG 0.367523 3_4:-77110615 Msa0523680:CDS
GTTCTTGGCAGGAATCAAAA+TGG 0.377515 3_4:-77106679 Msa0523680:intron
AGGAAGCAACCTCGCTTCTT+GGG 0.395335 3_4:-77110901 Msa0523680:CDS
TCAAAATGGAAACAATCAAC+AGG 0.395695 3_4:-77106665 Msa0523680:three_prime_UTR
CACTATAACATTTGAAGGGC+GGG 0.444872 3_4:+77106509 None:intergenic
ACGATTGAAGACTCAAACTC+TGG 0.451999 3_4:+77111031 None:intergenic
GAGGAACGAACTTGAGGATC+AGG 0.455383 3_4:+77110744 None:intergenic
AATTACACTATAACATTTGA+AGG 0.455809 3_4:+77106504 None:intergenic
TAAGTAATAGTGGATTATAA+TGG 0.457737 3_4:+77106405 None:intergenic
CGAACTTGAGGATCAGGAAC+AGG 0.471583 3_4:+77110750 None:intergenic
CGAGTTTCAACATAGCGAAA+AGG 0.472893 3_4:+77110777 None:intergenic
CTCGCTTCTTGGGTTGTCGC+CGG 0.477421 3_4:-77110891 Msa0523680:CDS
TTGGTAACAACCCATCCTTC+AGG 0.480089 3_4:-77106459 Msa0523680:three_prime_UTR
TGATCCAAAGATAATAAGCT+AGG 0.483025 3_4:+77110865 None:intergenic
ATAACATATTTCCTGAAGGA+TGG 0.485565 3_4:+77106448 None:intergenic
AAGATAATAAGCTAGGGTTC+CGG 0.497881 3_4:+77110872 None:intergenic
TAACATATTTCCTGAAGGAT+GGG 0.506004 3_4:+77106449 None:intergenic
TCGCGTTTGAGATCTTGATC+AGG 0.521692 3_4:+77110840 None:intergenic
AACTATACTATACTCTTCAA+TGG 0.530667 3_4:-77110994 Msa0523680:exon
ATTAATAACATATTTCCTGA+AGG 0.532087 3_4:+77106444 None:intergenic
GTCGTTCGTGAACAATTCGA+TGG 0.543665 3_4:-77110937 Msa0523680:CDS
TTATCGAAACGAAAGGGTCG+CGG 0.546321 3_4:-77111105 Msa0523680:five_prime_UTR
AAATTAGGGTGTGCCACACA+AGG 0.563596 3_4:+77111157 None:intergenic
TGTTGTTTATCGAAACGAAA+GGG 0.565036 3_4:-77111111 Msa0523680:five_prime_UTR
TAATAGTGGATTATAATGGC+AGG 0.575861 3_4:+77106409 None:intergenic
GATCCAAAGATAATAAGCTA+GGG 0.581242 3_4:+77110866 None:intergenic
TTCGTGAACAATTCGATGGG+TGG 0.584430 3_4:-77110933 Msa0523680:CDS
GAAGAACACTCGGCAACGCA+AGG 0.595860 3_4:-77110959 Msa0523680:CDS
TTGACACATTTACCCTTGTG+TGG 0.600283 3_4:-77111170 None:intergenic
ATTACACTATAACATTTGAA+GGG 0.606449 3_4:+77106505 None:intergenic
TCGTTCGTGAACAATTCGAT+GGG 0.609126 3_4:-77110936 Msa0523680:CDS
AATTCGATGGGTGGTCTGAG+AGG 0.619195 3_4:-77110924 Msa0523680:CDS
TCGATGGGTGGTCTGAGAGG+AGG 0.620565 3_4:-77110921 Msa0523680:CDS
ACACTATAACATTTGAAGGG+CGG 0.628364 3_4:+77106508 None:intergenic
TGTTTGACAGTATGTGTGCA+AGG 0.628493 3_4:+77111062 None:intergenic
TTGTTGTTTATCGAAACGAA+AGG 0.639306 3_4:-77111112 Msa0523680:five_prime_UTR
CGGCGACAACCCAAGAAGCG+AGG 0.662090 3_4:+77110892 None:intergenic
AATTAGGGTGTGCCACACAA+GGG 0.665578 3_4:+77111158 None:intergenic
ATAGCGAAAAGGATCATCAG+AGG 0.666816 3_4:+77110788 None:intergenic
CAAAATGGAAACAATCAACA+GGG 0.671176 3_4:-77106664 Msa0523680:three_prime_UTR
GTTTGACAGTATGTGTGCAA+GGG 0.694466 3_4:+77111063 None:intergenic
AGTAACTGGAGAAGAACACT+CGG 0.697006 3_4:-77110969 Msa0523680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAAAATATATTTTAATA+TGG + chr3_4:77108031-77108050 None:intergenic 0.0%
!!! TAATTTTCAATTTTAATTTC+AGG - chr3_4:77106906-77106925 Msa0523680:intron 10.0%
!! AAATTACTTTATATATTGTA+CGG - chr3_4:77107213-77107232 Msa0523680:intron 10.0%
!!! ATATCTTACATTTTAAAAAT+AGG + chr3_4:77107286-77107305 None:intergenic 10.0%
!! ATAAGTCAAATATTAAATAA+TGG - chr3_4:77107625-77107644 Msa0523680:intron 10.0%
!!! CATATTTTCAATAAATTAAT+GGG + chr3_4:77108113-77108132 None:intergenic 10.0%
!!! ACATATTTTCAATAAATTAA+TGG + chr3_4:77108114-77108133 None:intergenic 10.0%
!! TATTATATTAACACAATATT+AGG - chr3_4:77110218-77110237 Msa0523680:intron 10.0%
!!! TTCATTTTTAAATTTTGTTT+TGG + chr3_4:77110316-77110335 None:intergenic 10.0%
!! TAATAATAGAGAAAAAGAAA+AGG + chr3_4:77106877-77106896 None:intergenic 15.0%
!!! GTTTAAAAAAATAGTGTTTT+CGG - chr3_4:77108498-77108517 Msa0523680:intron 15.0%
!!! CCACTTTTATATTTAAAAAA+TGG + chr3_4:77110509-77110528 None:intergenic 15.0%
!!! CCATTTTTTAAATATAAAAG+TGG - chr3_4:77110506-77110525 Msa0523680:intron 15.0%
!! TACAAGAAAAATAAACATAT+TGG + chr3_4:77110783-77110802 None:intergenic 15.0%
!!! ATGTTTATTTTTCTTGTATT+TGG - chr3_4:77110785-77110804 Msa0523680:CDS 15.0%
!!! TGTTTATTTTTCTTGTATTT+GGG - chr3_4:77110786-77110805 Msa0523680:CDS 15.0%
!!! TTAAATTATTTTTGGATACA+GGG - chr3_4:77110935-77110954 Msa0523680:CDS 15.0%
!! AAAATACTGTATTACTATTA+AGG - chr3_4:77110997-77111016 Msa0523680:exon 15.0%
!! TTAGGGAAAAATATATTCAT+GGG + chr3_4:77108067-77108086 None:intergenic 20.0%
!! ATTAGGGAAAAATATATTCA+TGG + chr3_4:77108068-77108087 None:intergenic 20.0%
!!! AAGTTGATTTTAAAGTGAAA+GGG - chr3_4:77108208-77108227 Msa0523680:intron 20.0%
!! ATATTCATTGCATGTTTAAA+AGG + chr3_4:77108809-77108828 None:intergenic 20.0%
!! AATTAACCTCTATATAACAT+AGG - chr3_4:77109310-77109329 Msa0523680:intron 20.0%
!!! AAGTGAACGTTTTTTTTTAA+TGG + chr3_4:77109585-77109604 None:intergenic 20.0%
!! ATTAAAAAAAAACGTTCACT+TGG - chr3_4:77109584-77109603 Msa0523680:intron 20.0%
!!! TTTTAAATATAAAAGTGGCT+TGG - chr3_4:77110511-77110530 Msa0523680:intron 20.0%
!!! CGTTGTTTTTAATATAAAAG+TGG - chr3_4:77110641-77110660 Msa0523680:CDS 20.0%
!!! TTTTTAATATAAAAGTGGCT+CGG - chr3_4:77110646-77110665 Msa0523680:CDS 20.0%
!!! CTTAAATTATTTTTGGATAC+AGG - chr3_4:77110934-77110953 Msa0523680:CDS 20.0%
!! ATTACACTATAACATTTGAA+GGG + chr3_4:77111070-77111089 None:intergenic 20.0%
!! AATTACACTATAACATTTGA+AGG + chr3_4:77111071-77111090 None:intergenic 20.0%
!! ATTAATAACATATTTCCTGA+AGG + chr3_4:77111131-77111150 None:intergenic 20.0%
! GCACACAAGTAAAAAAATTA+GGG + chr3_4:77106432-77106451 None:intergenic 25.0%
! AGCACACAAGTAAAAAAATT+AGG + chr3_4:77106433-77106452 None:intergenic 25.0%
!!! AATTTTTTTACTTGTGTGCT+AGG - chr3_4:77106433-77106452 Msa0523680:three_prime_UTR 25.0%
! AACTATACTATACTCTTCAA+TGG - chr3_4:77106578-77106597 Msa0523680:three_prime_UTR 25.0%
! AAAAGAAAAGGAAGTAAAAG+TGG + chr3_4:77106865-77106884 None:intergenic 25.0%
!!! CAATTTTAATTTCAGGTTAC+TGG - chr3_4:77106913-77106932 Msa0523680:intron 25.0%
! ACAACAAAGACAAATCATTT+AGG - chr3_4:77106956-77106975 Msa0523680:intron 25.0%
! CAACAAAGACAAATCATTTA+GGG - chr3_4:77106957-77106976 Msa0523680:intron 25.0%
!!! TCAAGTTGGTGAAATAATAA+CGG + chr3_4:77107081-77107100 None:intergenic 25.0%
! GCAAAATAGTGAAATTTGAT+CGG - chr3_4:77107143-77107162 Msa0523680:intron 25.0%
! CAAAATAGTGAAATTTGATC+GGG - chr3_4:77107144-77107163 Msa0523680:intron 25.0%
! AAAATAGTGAAATTTGATCG+GGG - chr3_4:77107145-77107164 Msa0523680:intron 25.0%
! GTAAACCTAATTTACATTGT+TGG - chr3_4:77107178-77107197 Msa0523680:intron 25.0%
! ATACACCAACAATGTAAATT+AGG + chr3_4:77107186-77107205 None:intergenic 25.0%
! ATGTAAGATATTATAGACCT+AGG - chr3_4:77107295-77107314 Msa0523680:intron 25.0%
! TGTTATAATCACAAGTGTTT+AGG + chr3_4:77107559-77107578 None:intergenic 25.0%
! CTTTCCTAACTAATATGTAA+AGG + chr3_4:77107666-77107685 None:intergenic 25.0%
! TATTAGTTAGGAAAGCAAAA+CGG - chr3_4:77107671-77107690 Msa0523680:intron 25.0%
! ATAATCACAAGCAATTTAGT+CGG + chr3_4:77107974-77107993 None:intergenic 25.0%
! TATTCAAAAGATCAAAGAAG+TGG - chr3_4:77108149-77108168 Msa0523680:intron 25.0%
!!! GAAGTTGATTTTAAAGTGAA+AGG - chr3_4:77108207-77108226 Msa0523680:intron 25.0%
!!! AGTTGATTTTAAAGTGAAAG+GGG - chr3_4:77108209-77108228 Msa0523680:intron 25.0%
!! TATGTCGTTTATTATTTGAC+TGG + chr3_4:77108395-77108414 None:intergenic 25.0%
! CTTTACTAGCTAATATGTAA+AGG + chr3_4:77108429-77108448 None:intergenic 25.0%
! TATTAGCTAGTAAAGCAAAA+CGG - chr3_4:77108434-77108453 Msa0523680:intron 25.0%
!!! AATAAATTAAAGGTATTCCG+CGG + chr3_4:77108858-77108877 None:intergenic 25.0%
! ATAGAGGTTAATTATAACCT+TGG + chr3_4:77109303-77109322 None:intergenic 25.0%
!! TGATTGTGAACATAAGATTT+TGG - chr3_4:77109401-77109420 Msa0523680:intron 25.0%
!! ATTCAACACTAATTGTTTCT+GGG - chr3_4:77109488-77109507 Msa0523680:intron 25.0%
! ATTTCCAATATCAGGATTAT+GGG + chr3_4:77109544-77109563 None:intergenic 25.0%
!! ATCATTTGATTTCCAATATC+AGG + chr3_4:77109552-77109571 None:intergenic 25.0%
!!! TTGGTCTCTTTTGTTTAATT+GGG - chr3_4:77109603-77109622 Msa0523680:intron 25.0%
! ATTGAAGTTGAATTCATCAT+CGG + chr3_4:77109766-77109785 None:intergenic 25.0%
!!! AACTTCAATTTTGCTTTGAA+TGG - chr3_4:77109777-77109796 Msa0523680:intron 25.0%
!!! ACTTCAATTTTGCTTTGAAT+GGG - chr3_4:77109778-77109797 Msa0523680:intron 25.0%
!! AACAAGTTCTTCTAAAAGAA+AGG - chr3_4:77110274-77110293 Msa0523680:intron 25.0%
! GGTATAATTCTAATACAGAT+AGG + chr3_4:77110488-77110507 None:intergenic 25.0%
! GATACTTTATCGATATGTAT+AGG - chr3_4:77110668-77110687 Msa0523680:intron 25.0%
! TTTGTGATTGCTTGATTATT+TGG - chr3_4:77110809-77110828 Msa0523680:CDS 25.0%
! TTGTGATTGCTTGATTATTT+GGG - chr3_4:77110810-77110829 Msa0523680:CDS 25.0%
!! TTTTAATGCTCTGATATTAG+AGG - chr3_4:77110833-77110852 Msa0523680:CDS 25.0%
!! TTCATTTATGATGATGTTCT+TGG - chr3_4:77110878-77110897 Msa0523680:CDS 25.0%
!! AGGGAGACTTAAATTATTTT+TGG - chr3_4:77110927-77110946 Msa0523680:CDS 25.0%
!! TTGTTGTTTATCGAAACGAA+AGG - chr3_4:77106460-77106479 Msa0523680:three_prime_UTR 30.0%
! TGTTGTTTATCGAAACGAAA+GGG - chr3_4:77106461-77106480 Msa0523680:three_prime_UTR 30.0%
GATCCAAAGATAATAAGCTA+GGG + chr3_4:77106709-77106728 None:intergenic 30.0%
TGATCCAAAGATAATAAGCT+AGG + chr3_4:77106710-77106729 None:intergenic 30.0%
AAAAGTGGTAAGTAAGAAAG+AGG + chr3_4:77106850-77106869 None:intergenic 30.0%
CAGCACATGATTAAGTAATT+AGG + chr3_4:77107009-77107028 None:intergenic 30.0%
TGGTGTACAATCATTATACT+CGG + chr3_4:77107043-77107062 None:intergenic 30.0%
TTAATTACAACGTGTCAAGT+TGG + chr3_4:77107095-77107114 None:intergenic 30.0%
AAATAGTGAAATTTGATCGG+GGG - chr3_4:77107146-77107165 Msa0523680:intron 30.0%
GTGTTTGGATATGCATAAAA+AGG - chr3_4:77107321-77107340 Msa0523680:intron 30.0%
! TTGAGTATCACAAATTTGCT+TGG - chr3_4:77107348-77107367 Msa0523680:intron 30.0%
GCAACAAACATAATTGTTAG+AGG - chr3_4:77107478-77107497 Msa0523680:intron 30.0%
! CTTATTGAAACACACTGTTT+TGG + chr3_4:77107610-77107629 None:intergenic 30.0%
CAGTCCTTTACATATTAGTT+AGG - chr3_4:77107659-77107678 Msa0523680:intron 30.0%
TCCACGTGTTTAAAAATGAT+AGG - chr3_4:77107730-77107749 Msa0523680:intron 30.0%
CCACGTGTTTAAAAATGATA+GGG - chr3_4:77107731-77107750 Msa0523680:intron 30.0%
TAATCACAAGCAATTTAGTC+GGG + chr3_4:77107973-77107992 None:intergenic 30.0%
ATATTCATGGGACGTTTAAA+AGG + chr3_4:77108055-77108074 None:intergenic 30.0%
!! CGACATTTTGACATTGATTA+GGG + chr3_4:77108084-77108103 None:intergenic 30.0%
! AATCCTCTTTGCAAAGTTTT+TGG - chr3_4:77108933-77108952 Msa0523680:intron 30.0%
! ATCCTCTTTGCAAAGTTTTT+GGG - chr3_4:77108934-77108953 Msa0523680:intron 30.0%
GAATTAGGTTTGAGTAATGA+TGG + chr3_4:77109239-77109258 None:intergenic 30.0%
ATGCGAACTAATGAAGAATT+AGG + chr3_4:77109254-77109273 None:intergenic 30.0%
ATCTTGCTCTATAACTAGTT+CGG - chr3_4:77109370-77109389 Msa0523680:intron 30.0%
GACTGAATTTCAATACGAAT+TGG - chr3_4:77109465-77109484 Msa0523680:intron 30.0%
GATTCAACACTAATTGTTTC+TGG - chr3_4:77109487-77109506 Msa0523680:intron 30.0%
!! TTCAACACTAATTGTTTCTG+GGG - chr3_4:77109489-77109508 Msa0523680:intron 30.0%
GATTTCCAATATCAGGATTA+TGG + chr3_4:77109545-77109564 None:intergenic 30.0%
TGGAAATCAAATGATTGACT+TGG - chr3_4:77109557-77109576 Msa0523680:intron 30.0%
!! CTTGGTCTCTTTTGTTTAAT+TGG - chr3_4:77109602-77109621 Msa0523680:intron 30.0%
CAATTGAAGTCTCATGTAAA+TGG + chr3_4:77109658-77109677 None:intergenic 30.0%
CATTTACATGAGACTTCAAT+TGG - chr3_4:77109656-77109675 Msa0523680:intron 30.0%
TTGAAGTTGAATTCATCATC+GGG + chr3_4:77109765-77109784 None:intergenic 30.0%
!!! TTTACAGCCATTTTTTGGTT+CGG + chr3_4:77109813-77109832 None:intergenic 30.0%
!!! CATGTTTTACAGCCATTTTT+TGG + chr3_4:77109818-77109837 None:intergenic 30.0%
!! CTTTTAGAAGAACTTGTTCA+AGG + chr3_4:77110272-77110291 None:intergenic 30.0%
!!! AGAATCACTGAGTTTTTTTC+TGG - chr3_4:77110374-77110393 Msa0523680:intron 30.0%
TTGCATGTATGAATACTTCA+TGG - chr3_4:77110613-77110632 Msa0523680:CDS 30.0%
! GGTGAAGTATCAAAGAATAT+TGG - chr3_4:77110689-77110708 Msa0523680:intron 30.0%
AAAGAATATTGGTACCGTAT+TGG - chr3_4:77110700-77110719 Msa0523680:intron 30.0%
TAAAGGACACATATCCAATA+CGG + chr3_4:77110717-77110736 None:intergenic 30.0%
TATTGGATATGTGTCCTTTA+TGG - chr3_4:77110717-77110736 Msa0523680:intron 30.0%
ATATATGAATGCATGCTTCA+TGG - chr3_4:77110757-77110776 Msa0523680:CDS 30.0%
TCAAAATGGAAACAATCAAC+AGG - chr3_4:77110907-77110926 Msa0523680:CDS 30.0%
CAAAATGGAAACAATCAACA+GGG - chr3_4:77110908-77110927 Msa0523680:CDS 30.0%
!!! AGTATTTTGATTCCTGCTAA+GGG + chr3_4:77110985-77111004 None:intergenic 30.0%
TAACATATTTCCTGAAGGAT+GGG + chr3_4:77111126-77111145 None:intergenic 30.0%
ATAACATATTTCCTGAAGGA+TGG + chr3_4:77111127-77111146 None:intergenic 30.0%
!!! TTTTTTACTTGTGTGCTAGG+AGG - chr3_4:77106436-77106455 Msa0523680:three_prime_UTR 35.0%
AAGATAATAAGCTAGGGTTC+CGG + chr3_4:77106703-77106722 None:intergenic 35.0%
GAACCCTAGCTTATTATCTT+TGG - chr3_4:77106703-77106722 Msa0523680:intron 35.0%
!! CAGGTTACTGGTTTGATATA+TGG - chr3_4:77106925-77106944 Msa0523680:intron 35.0%
AACGGACGTATATACATTGT+TGG + chr3_4:77107063-77107082 None:intergenic 35.0%
CTAGAAGTAATACTATGTCG+TGG - chr3_4:77107121-77107140 Msa0523680:intron 35.0%
AATAGTGAAATTTGATCGGG+GGG - chr3_4:77107147-77107166 Msa0523680:intron 35.0%
TATAGACCTAGGATTGTGTT+TGG - chr3_4:77107306-77107325 Msa0523680:intron 35.0%
! GTAAAACTAGAGCATGGTTT+TGG - chr3_4:77107396-77107415 Msa0523680:intron 35.0%
CAAGTGTTTAGGCTTCATTT+AGG + chr3_4:77107548-77107567 None:intergenic 35.0%
!!! AACACACTGTTTTGGAAAGA+CGG + chr3_4:77107602-77107621 None:intergenic 35.0%
!! CCCTATCATTTTTAAACACG+TGG + chr3_4:77107734-77107753 None:intergenic 35.0%
! CAAGATTACGATTTCTGAGA+AGG + chr3_4:77107853-77107872 None:intergenic 35.0%
!! GCGACATTTTGACATTGATT+AGG + chr3_4:77108085-77108104 None:intergenic 35.0%
!!! TTTTAAAGTGAAAGGGGTAG+AGG - chr3_4:77108215-77108234 Msa0523680:intron 35.0%
! TTTAAAGTGAAAGGGGTAGA+GGG - chr3_4:77108216-77108235 Msa0523680:intron 35.0%
!! TTGAAACACACTGTTTTGGA+AGG + chr3_4:77107606-77107625 None:intergenic 35.0%
AATCAATGGGGGTAGATTAT+AGG - chr3_4:77108664-77108683 Msa0523680:intron 35.0%
TAATCACAAGCAATGTAGTC+AGG + chr3_4:77108728-77108747 None:intergenic 35.0%
ATAAGAGAAAGACATGTCTC+TGG + chr3_4:77108761-77108780 None:intergenic 35.0%
!! CGGCATTTTGACATTGATTA+AGG + chr3_4:77108838-77108857 None:intergenic 35.0%
TAATCAATGTCAAAATGCCG+CGG - chr3_4:77108838-77108857 Msa0523680:intron 35.0%
AAACTTTGCAAAGAGGATTG+TGG + chr3_4:77108932-77108951 None:intergenic 35.0%
! TCCTCTTTGCAAAGTTTTTG+GGG - chr3_4:77108935-77108954 Msa0523680:intron 35.0%
TCACTTGTGAGCTTTCTATT+TGG - chr3_4:77108988-77109007 Msa0523680:intron 35.0%
! CTTTCTATTTGGCTCGTATA+AGG - chr3_4:77108999-77109018 Msa0523680:intron 35.0%
AATGGTTGAATCTCCAAAGA+AGG + chr3_4:77109150-77109169 None:intergenic 35.0%
!! GAATACCATGATGATGGAAT+TGG + chr3_4:77109173-77109192 None:intergenic 35.0%
AAACTACTGGAATGGAAGAA+AGG + chr3_4:77109208-77109227 None:intergenic 35.0%
TTTGAGTAATGATGGCAATG+AGG + chr3_4:77109231-77109250 None:intergenic 35.0%
TTTCACAATTCTTCTCTCCA+AGG - chr3_4:77109283-77109302 Msa0523680:intron 35.0%
TGAGCTCCTATGTTATATAG+AGG + chr3_4:77109319-77109338 None:intergenic 35.0%
! TGACGATGATGATGAAGATA+TGG + chr3_4:77109351-77109370 None:intergenic 35.0%
TCTTGCTCTATAACTAGTTC+GGG - chr3_4:77109371-77109390 Msa0523680:intron 35.0%
!! TCAACACTAATTGTTTCTGG+GGG - chr3_4:77109490-77109509 Msa0523680:intron 35.0%
AGTACCCATAATCCTGATAT+TGG - chr3_4:77109537-77109556 Msa0523680:intron 35.0%
! AAGATTTTACCTCAAAGCTC+AGG + chr3_4:77109682-77109701 None:intergenic 35.0%
TGAAGTTGAATTCATCATCG+GGG + chr3_4:77109764-77109783 None:intergenic 35.0%
!!! CCATTTTTTGGTTCGGATTT+AGG + chr3_4:77109806-77109825 None:intergenic 35.0%
CCTAAATCCGAACCAAAAAA+TGG - chr3_4:77109803-77109822 Msa0523680:intron 35.0%
!!! TAAAACATGCCATTTTTCGC+CGG - chr3_4:77109829-77109848 Msa0523680:intron 35.0%
TTTGTTGCATTGCATGATGA+GGG + chr3_4:77110189-77110208 None:intergenic 35.0%
GATACTCTATGGATATGTGT+GGG - chr3_4:77110533-77110552 Msa0523680:intron 35.0%
TCGAAGAATTGGTATCGTAT+TGG - chr3_4:77110563-77110582 Msa0523680:intron 35.0%
TGCCTTTATGGATACATGAA+GGG - chr3_4:77110589-77110608 Msa0523680:intron 35.0%
ATCCCTTCATGTATCCATAA+AGG + chr3_4:77110594-77110613 None:intergenic 35.0%
TGTCCTTTATGGATACATGA+AGG - chr3_4:77110728-77110747 Msa0523680:intron 35.0%
GTCCTTTATGGATACATGAA+GGG - chr3_4:77110729-77110748 Msa0523680:intron 35.0%
ATCCCTTCATGTATCCATAA+AGG + chr3_4:77110594-77110613 None:intergenic 35.0%
! TTTATGATGATGTTCTTGGC+AGG - chr3_4:77110882-77110901 Msa0523680:CDS 35.0%
!!! CAGTATTTTGATTCCTGCTA+AGG + chr3_4:77110986-77111005 None:intergenic 35.0%
ACACTATAACATTTGAAGGG+CGG + chr3_4:77111067-77111086 None:intergenic 35.0%
GTTTGACAGTATGTGTGCAA+GGG + chr3_4:77106512-77106531 None:intergenic 40.0%
TGTTTGACAGTATGTGTGCA+AGG + chr3_4:77106513-77106532 None:intergenic 40.0%
ACGATTGAAGACTCAAACTC+TGG + chr3_4:77106544-77106563 None:intergenic 40.0%
AGTAACTGGAGAAGAACACT+CGG - chr3_4:77106603-77106622 Msa0523680:three_prime_UTR 40.0%
TCGTTCGTGAACAATTCGAT+GGG - chr3_4:77106636-77106655 Msa0523680:three_prime_UTR 40.0%
ATAGCGAAAAGGATCATCAG+AGG + chr3_4:77106787-77106806 None:intergenic 40.0%
CGAGTTTCAACATAGCGAAA+AGG + chr3_4:77106798-77106817 None:intergenic 40.0%
AAGAAAGAGGAACGAACTTG+AGG + chr3_4:77106837-77106856 None:intergenic 40.0%
ATAGTGAAATTTGATCGGGG+GGG - chr3_4:77107148-77107167 Msa0523680:intron 40.0%
GCATATCCAAACACAATCCT+AGG + chr3_4:77107315-77107334 None:intergenic 40.0%
TTCGTCGTAAAACTAGAGCA+TGG - chr3_4:77107390-77107409 Msa0523680:intron 40.0%
!!! AACTAGAGCATGGTTTTGGT+TGG - chr3_4:77107400-77107419 Msa0523680:intron 40.0%
!!! TGGTTTTGGTTGGATGCATT+TGG - chr3_4:77107410-77107429 Msa0523680:intron 40.0%
!!! GGTTTTGGTTGGATGCATTT+GGG - chr3_4:77107411-77107430 Msa0523680:intron 40.0%
! GTTTTCAGTTTCTCGAAACC+AGG - chr3_4:77107753-77107772 Msa0523680:intron 40.0%
TCTTGCTCGAAACGAACATA+AGG - chr3_4:77107818-77107837 Msa0523680:intron 40.0%
TTCAAGCAAGACCACCAAAA+GGG + chr3_4:77107887-77107906 None:intergenic 40.0%
ATTCAAGCAAGACCACCAAA+AGG + chr3_4:77107888-77107907 None:intergenic 40.0%
ATTCCATGGGGCTATATGAT+AGG - chr3_4:77107917-77107936 Msa0523680:intron 40.0%
AGATCAAAGAAGTGGTTCCA+TGG - chr3_4:77108157-77108176 Msa0523680:intron 40.0%
! CTGGTTGAAACACACTGTTT+TGG + chr3_4:77108376-77108395 None:intergenic 40.0%
AATGGGGGTAGATTATAGGA+TGG - chr3_4:77108668-77108687 Msa0523680:intron 40.0%
TCCCCAAAAACTTTGCAAAG+AGG + chr3_4:77108939-77108958 None:intergenic 40.0%
!! TCTTTGCAAAGTTTTTGGGG+AGG - chr3_4:77108938-77108957 Msa0523680:intron 40.0%
AGAAAGCTCACAAGTGAAGA+AGG + chr3_4:77108985-77109004 None:intergenic 40.0%
TCGACACACATCATATTCTG+TGG + chr3_4:77109049-77109068 None:intergenic 40.0%
ATATGATGTGTGTCGAAAGC+AGG - chr3_4:77109053-77109072 Msa0523680:intron 40.0%
AAGAGTTTGGTCATCTGACA+AGG + chr3_4:77109095-77109114 None:intergenic 40.0%
GGACAGGAGATATAAGAGTT+TGG + chr3_4:77109108-77109127 None:intergenic 40.0%
GTTTCTGTCTGTACCTTCTT+TGG - chr3_4:77109134-77109153 Msa0523680:intron 40.0%
!! CCATGATGATGGAATTGGAA+TGG + chr3_4:77109168-77109187 None:intergenic 40.0%
CCATTCCAATTCCATCATCA+TGG - chr3_4:77109165-77109184 Msa0523680:intron 40.0%
! GTTGGTGAATACCATGATGA+TGG + chr3_4:77109179-77109198 None:intergenic 40.0%
!! ATGGAAGAAAGGCATTGTGT+TGG + chr3_4:77109197-77109216 None:intergenic 40.0%
CAATGAGGAAACTACTGGAA+TGG + chr3_4:77109216-77109235 None:intergenic 40.0%
ACTCCAGAAACAGAAGAACA+CGG - chr3_4:77109440-77109459 Msa0523680:intron 40.0%
!! CAACACTAATTGTTTCTGGG+GGG - chr3_4:77109491-77109510 Msa0523680:intron 40.0%
! TTTAGGATTCCGGCGAAAAA+TGG + chr3_4:77109841-77109860 None:intergenic 40.0%
TTGTTGCATTGCATGATGAG+GGG + chr3_4:77110188-77110207 None:intergenic 40.0%
! GTTTGTTGCATTGCATGATG+AGG + chr3_4:77110190-77110209 None:intergenic 40.0%
TCTTTCAACGCATCTGAATG+AGG + chr3_4:77110413-77110432 None:intergenic 40.0%
! AGACAATACGGTTTGGACTT+TGG + chr3_4:77110438-77110457 None:intergenic 40.0%
CAACTTGAGACAATACGGTT+TGG + chr3_4:77110445-77110464 None:intergenic 40.0%
GAGTGCAACTTGAGACAATA+CGG + chr3_4:77110450-77110469 None:intergenic 40.0%
! AAAGTGGCTTGGATACTCTA+TGG - chr3_4:77110522-77110541 Msa0523680:intron 40.0%
GGATACTCTATGGATATGTG+TGG - chr3_4:77110532-77110551 Msa0523680:intron 40.0%
!! TGGGTGAAGTATCGAAGAAT+TGG - chr3_4:77110552-77110571 Msa0523680:intron 40.0%
TCGTATTGGATGTGCCTTTA+TGG - chr3_4:77110577-77110596 Msa0523680:intron 40.0%
GTGCCTTTATGGATACATGA+AGG - chr3_4:77110588-77110607 Msa0523680:intron 40.0%
GTTCTTGGCAGGAATCAAAA+TGG - chr3_4:77110893-77110912 Msa0523680:CDS 40.0%
CACTATAACATTTGAAGGGC+GGG + chr3_4:77111066-77111085 None:intergenic 40.0%
!!! TGAGTTTTGAGAACGACTGT+TGG - chr3_4:77111094-77111113 Msa0523680:five_prime_UTR 40.0%
AATTAGGGTGTGCCACACAA+GGG + chr3_4:77106417-77106436 None:intergenic 45.0%
AAATTAGGGTGTGCCACACA+AGG + chr3_4:77106418-77106437 None:intergenic 45.0%
TTATCGAAACGAAAGGGTCG+CGG - chr3_4:77106467-77106486 Msa0523680:three_prime_UTR 45.0%
ACTCTTCAATGGCGAGTAAC+TGG - chr3_4:77106589-77106608 Msa0523680:three_prime_UTR 45.0%
GTCGTTCGTGAACAATTCGA+TGG - chr3_4:77106635-77106654 Msa0523680:three_prime_UTR 45.0%
TTCGTGAACAATTCGATGGG+TGG - chr3_4:77106639-77106658 Msa0523680:three_prime_UTR 45.0%
! TCGCGTTTGAGATCTTGATC+AGG + chr3_4:77106735-77106754 None:intergenic 45.0%
TAGTGAAATTTGATCGGGGG+GGG - chr3_4:77107149-77107168 Msa0523680:intron 45.0%
! TGGTTGGATGCATTTGGGTT+TGG - chr3_4:77107416-77107435 Msa0523680:intron 45.0%
ACGGTGCGTTTACATTAGTG+AGG - chr3_4:77107690-77107709 Msa0523680:intron 45.0%
!! CAAACAGCACGTACTGACTT+GGG + chr3_4:77107793-77107812 None:intergenic 45.0%
!! ACAAACAGCACGTACTGACT+TGG + chr3_4:77107794-77107813 None:intergenic 45.0%
! TTGACCACGAAGTTCCCTTT+TGG - chr3_4:77107870-77107889 Msa0523680:intron 45.0%
TGAATTGCAGCACGATTCCA+TGG - chr3_4:77107903-77107922 Msa0523680:intron 45.0%
GAATTGCAGCACGATTCCAT+GGG - chr3_4:77107904-77107923 Msa0523680:intron 45.0%
AATTGCAGCACGATTCCATG+GGG - chr3_4:77107905-77107924 Msa0523680:intron 45.0%
CATCCTATCATATAGCCCCA+TGG + chr3_4:77107923-77107942 None:intergenic 45.0%
CATGGGGCTATATGATAGGA+TGG - chr3_4:77107921-77107940 Msa0523680:intron 45.0%
TGGTTCCATGGATGTTTGCA+AGG - chr3_4:77108169-77108188 Msa0523680:intron 45.0%
GGTTCCATGGATGTTTGCAA+GGG - chr3_4:77108170-77108189 Msa0523680:intron 45.0%
AAAGGGGTAGAGGGAAAAGT+TGG - chr3_4:77108225-77108244 Msa0523680:intron 45.0%
!!! AACACACTGTTTTGGAAGGC+TGG + chr3_4:77108368-77108387 None:intergenic 45.0%
TAAACACGTTCTGCTGCGTT+TGG + chr3_4:77108483-77108502 None:intergenic 45.0%
! GTTTTCGGTTTCTCGAAACC+AGG - chr3_4:77108513-77108532 Msa0523680:intron 45.0%
TTGCAAAGCCCAACTCAAGT+CGG - chr3_4:77108536-77108555 Msa0523680:intron 45.0%
TTCAAGCGAGAAGAGACGAA+CGG + chr3_4:77108568-77108587 None:intergenic 45.0%
! ATTGATTCAAGCAAGACCGC+CGG + chr3_4:77108651-77108670 None:intergenic 45.0%
GCGGTCTTGCTTGAATCAAT+GGG - chr3_4:77108651-77108670 Msa0523680:intron 45.0%
CGGTCTTGCTTGAATCAATG+GGG - chr3_4:77108652-77108671 Msa0523680:intron 45.0%
GGTCTTGCTTGAATCAATGG+GGG - chr3_4:77108653-77108672 Msa0523680:intron 45.0%
GTGCTAGCATAGTAGCATGT+AGG + chr3_4:77108700-77108719 None:intergenic 45.0%
CACAAGCAATGTAGTCAGGA+TGG + chr3_4:77108724-77108743 None:intergenic 45.0%
TTGCAAAGAGGATTGTGGCA+CGG + chr3_4:77108927-77108946 None:intergenic 45.0%
!! TTGCAAAGTTTTTGGGGAGG+AGG - chr3_4:77108941-77108960 Msa0523680:intron 45.0%
CATATTCTGTGGTCTGAGAG+TGG + chr3_4:77109038-77109057 None:intergenic 45.0%
CTGACAAGGAAATCAGCATC+AGG + chr3_4:77109081-77109100 None:intergenic 45.0%
AGACAGAAACAGAGTTGGAC+AGG + chr3_4:77109124-77109143 None:intergenic 45.0%
GGTACAGACAGAAACAGAGT+TGG + chr3_4:77109129-77109148 None:intergenic 45.0%
GATGGCAATGAGGAAACTAC+TGG + chr3_4:77109221-77109240 None:intergenic 45.0%
CTCCAGAAACAGAAGAACAC+GGG - chr3_4:77109441-77109460 Msa0523680:intron 45.0%
TCCAGAAACAGAAGAACACG+GGG - chr3_4:77109442-77109461 Msa0523680:intron 45.0%
!! ACTAATTGTTTCTGGGGGGA+TGG - chr3_4:77109495-77109514 Msa0523680:intron 45.0%
!! CTAATTGTTTCTGGGGGGAT+GGG - chr3_4:77109496-77109515 Msa0523680:intron 45.0%
!! TAATTGTTTCTGGGGGGATG+GGG - chr3_4:77109497-77109516 Msa0523680:intron 45.0%
CTCATCCATTGTGATGCATG+AGG + chr3_4:77109633-77109652 None:intergenic 45.0%
! TTCAATTGGCCTGAGCTTTG+AGG - chr3_4:77109670-77109689 Msa0523680:intron 45.0%
! TTTGCGGGTGTTTAGGATTC+CGG + chr3_4:77109851-77109870 None:intergenic 45.0%
TCCTAAACACCCGCAAACTT+CGG - chr3_4:77109854-77109873 Msa0523680:intron 45.0%
CAGGTCTGATTCTTTCTGTG+GGG + chr3_4:77109918-77109937 None:intergenic 45.0%
CCAGGTCTGATTCTTTCTGT+GGG + chr3_4:77109919-77109938 None:intergenic 45.0%
CCACAGAAAGAATCAGACCT+GGG - chr3_4:77109917-77109936 Msa0523680:intron 45.0%
CACAGAAAGAATCAGACCTG+GGG - chr3_4:77109918-77109937 Msa0523680:intron 45.0%
CGGGAATCCATCTTCAACAA+CGG + chr3_4:77110027-77110046 None:intergenic 45.0%
TAGAGGACCAGTCATCTTCA+CGG + chr3_4:77110053-77110072 None:intergenic 45.0%
! TGAAGATGACTGGTCCTCTA+TGG - chr3_4:77110053-77110072 Msa0523680:intron 45.0%
TTGACGAGTCATGGAGAATG+CGG + chr3_4:77110113-77110132 None:intergenic 45.0%
ACTGGGTAATTGACGAGTCA+TGG + chr3_4:77110122-77110141 None:intergenic 45.0%
GGAAGAAGTGATCACTCACT+GGG + chr3_4:77110139-77110158 None:intergenic 45.0%
! AATTTTCCGGTCAGTGGGAA+CGG + chr3_4:77110162-77110181 None:intergenic 45.0%
! TGATGAGGGGGTGAATTTTC+CGG + chr3_4:77110175-77110194 None:intergenic 45.0%
TGTTGCATTGCATGATGAGG+GGG + chr3_4:77110187-77110206 None:intergenic 45.0%
!! TGTTTTTGCTCTCCCTTAGC+AGG - chr3_4:77110970-77110989 Msa0523680:CDS 45.0%
! TTGGTAACAACCCATCCTTC+AGG - chr3_4:77111113-77111132 Msa0523680:five_prime_UTR 45.0%
!!! ATTAATATATTTTTTTAATG+TGG + chr3_4:77108784-77108803 None:intergenic 5.0%
!!! ACATATTTTAAATAAATTAA+AGG + chr3_4:77108868-77108887 None:intergenic 5.0%
AATTCGATGGGTGGTCTGAG+AGG - chr3_4:77106648-77106667 Msa0523680:three_prime_UTR 50.0%
AGGAAGCAACCTCGCTTCTT+GGG - chr3_4:77106671-77106690 Msa0523680:three_prime_UTR 50.0%
CGAACTTGAGGATCAGGAAC+AGG + chr3_4:77106825-77106844 None:intergenic 50.0%
GAGGAACGAACTTGAGGATC+AGG + chr3_4:77106831-77106850 None:intergenic 50.0%
AGTGAAATTTGATCGGGGGG+GGG - chr3_4:77107150-77107169 Msa0523680:intron 50.0%
! ACCACGAAGTTCCCTTTTGG+TGG - chr3_4:77107873-77107892 Msa0523680:intron 50.0%
ACCACCAAAAGGGAACTTCG+TGG + chr3_4:77107877-77107896 None:intergenic 50.0%
CTCTCCCTTGCAAACATCCA+TGG + chr3_4:77108177-77108196 None:intergenic 50.0%
TGTTTGCAAGGGAGAGAGAG+TGG - chr3_4:77108181-77108200 Msa0523680:intron 50.0%
GTTTGCAAGGGAGAGAGAGT+GGG - chr3_4:77108182-77108201 Msa0523680:intron 50.0%
TTTGCAAGGGAGAGAGAGTG+GGG - chr3_4:77108183-77108202 Msa0523680:intron 50.0%
TCCGCAAGTGAGAATGAGTG+AGG - chr3_4:77108248-77108267 Msa0523680:intron 50.0%
CCCTCACTCATTCTCACTTG+CGG + chr3_4:77108252-77108271 None:intergenic 50.0%
CCGCAAGTGAGAATGAGTGA+GGG - chr3_4:77108249-77108268 Msa0523680:intron 50.0%
CGCAAGTGAGAATGAGTGAG+GGG - chr3_4:77108250-77108269 Msa0523680:intron 50.0%
ACCGTGACGTCTCTGGTATA+TGG - chr3_4:77108283-77108302 Msa0523680:intron 50.0%
CCCATATACCAGAGACGTCA+CGG + chr3_4:77108287-77108306 None:intergenic 50.0%
CCGTGACGTCTCTGGTATAT+GGG - chr3_4:77108284-77108303 Msa0523680:intron 50.0%
ACGTCTCTGGTATATGGGAG+TGG - chr3_4:77108289-77108308 Msa0523680:intron 50.0%
CGTCTCTGGTATATGGGAGT+GGG - chr3_4:77108290-77108309 Msa0523680:intron 50.0%
ACGGTGCGTTCAGATTAGTG+AGG - chr3_4:77108453-77108472 Msa0523680:intron 50.0%
!! TTGAGTTGGGCTTTGCAACC+TGG + chr3_4:77108534-77108553 None:intergenic 50.0%
TTGACCACGAAACTCCCTTC+CGG - chr3_4:77108629-77108648 Msa0523680:intron 50.0%
GGCGGTCTTGCTTGAATCAA+TGG - chr3_4:77108650-77108669 Msa0523680:intron 50.0%
CCAGAAACAGAAGAACACGG+GGG - chr3_4:77109443-77109462 Msa0523680:intron 50.0%
!! AATTGTTTCTGGGGGGATGG+GGG - chr3_4:77109498-77109517 Msa0523680:intron 50.0%
GTGCTCCTCATGCATCACAA+TGG - chr3_4:77109625-77109644 Msa0523680:intron 50.0%
CCTAAACACCCGCAAACTTC+GGG - chr3_4:77109855-77109874 Msa0523680:intron 50.0%
TTCTGCCGGAGAAGCAAAGT+CGG - chr3_4:77109878-77109897 Msa0523680:intron 50.0%
CCCACAGAAAGAATCAGACC+TGG - chr3_4:77109916-77109935 Msa0523680:intron 50.0%
CCCAGGTCTGATTCTTTCTG+TGG + chr3_4:77109920-77109939 None:intergenic 50.0%
TATGACTTTGCCGGCGTCTT+TGG + chr3_4:77109977-77109996 None:intergenic 50.0%
AAAGACGCCGGCAAAGTCAT+AGG - chr3_4:77109976-77109995 Msa0523680:intron 50.0%
ATGGACGCCTATGACTTTGC+CGG + chr3_4:77109986-77110005 None:intergenic 50.0%
! AGGCGTCCATCTTTTTGCCT+CGG - chr3_4:77109996-77110015 Msa0523680:intron 50.0%
GTGTCTCCGAGGCAAAAAGA+TGG + chr3_4:77110005-77110024 None:intergenic 50.0%
GGAGACACCGTTGTTGAAGA+TGG - chr3_4:77110017-77110036 Msa0523680:intron 50.0%
ACCAGTCATCTTCACGGACA+CGG + chr3_4:77110047-77110066 None:intergenic 50.0%
ACTGGTCCTCTATGGATCAC+TGG - chr3_4:77110061-77110080 Msa0523680:intron 50.0%
TCATCGCCAGTGATCCATAG+AGG + chr3_4:77110070-77110089 None:intergenic 50.0%
GAGTCATGGAGAATGCGGAT+GGG + chr3_4:77110108-77110127 None:intergenic 50.0%
GGGAAGAAGTGATCACTCAC+TGG + chr3_4:77110140-77110159 None:intergenic 50.0%
! ATTTTCCGGTCAGTGGGAAC+GGG + chr3_4:77110161-77110180 None:intergenic 50.0%
! GGGTGAATTTTCCGGTCAGT+GGG + chr3_4:77110167-77110186 None:intergenic 50.0%
GAAGAACACTCGGCAACGCA+AGG - chr3_4:77106613-77106632 Msa0523680:three_prime_UTR 55.0%
GAGGAAGCAACCTCGCTTCT+TGG - chr3_4:77106670-77106689 Msa0523680:three_prime_UTR 55.0%
AACACGTGGAACGCTGCGTT+TGG + chr3_4:77107720-77107739 None:intergenic 55.0%
! TGGGTTGGACTTCTGCAACC+TGG + chr3_4:77107774-77107793 None:intergenic 55.0%
!! CAGCACGTACTGACTTGGGT+TGG + chr3_4:77107789-77107808 None:intergenic 55.0%
!! GGTATATGGGAGTGGGCTGT+AGG - chr3_4:77108297-77108316 Msa0523680:intron 55.0%
!! GGCACAGACCGACTTGAGTT+GGG + chr3_4:77108547-77108566 None:intergenic 55.0%
TTCAAGCAAGACCGCCGGAA+GGG + chr3_4:77108646-77108665 None:intergenic 55.0%
ATTCAAGCAAGACCGCCGGA+AGG + chr3_4:77108647-77108666 None:intergenic 55.0%
TTCTGTGGTCTGAGAGTGGC+TGG + chr3_4:77109034-77109053 None:intergenic 55.0%
CCCCCGTGTTCTTCTGTTTC+TGG + chr3_4:77109446-77109465 None:intergenic 55.0%
!! ATTGTTTCTGGGGGGATGGG+GGG - chr3_4:77109499-77109518 Msa0523680:intron 55.0%
ACAAGGAGCTGAGCCATCTC+CGG + chr3_4:77109734-77109753 None:intergenic 55.0%
ATCATCGGGGCTGAGCTACA+AGG + chr3_4:77109751-77109770 None:intergenic 55.0%
CCCGAAGTTTGCGGGTGTTT+AGG + chr3_4:77109858-77109877 None:intergenic 55.0%
! AGCAGCCGACTTTGCTTCTC+CGG + chr3_4:77109886-77109905 None:intergenic 55.0%
ACCTGGGGAATTTGTGCGTG+AGG - chr3_4:77109933-77109952 Msa0523680:intron 55.0%
ACCTCACGCACAAATTCCCC+AGG + chr3_4:77109937-77109956 None:intergenic 55.0%
TGGGGAATTTGTGCGTGAGG+TGG - chr3_4:77109936-77109955 Msa0523680:intron 55.0%
! GCGTCTTTGGAGATCCACCT+AGG + chr3_4:77109964-77109983 None:intergenic 55.0%
AGGTGGATCTCCAAAGACGC+CGG - chr3_4:77109964-77109983 Msa0523680:intron 55.0%
CTTCAACAACGGTGTCTCCG+AGG + chr3_4:77110016-77110035 None:intergenic 55.0%
CCAGTCATCTTCACGGACAC+GGG + chr3_4:77110046-77110065 None:intergenic 55.0%
CGAGTCATGGAGAATGCGGA+TGG + chr3_4:77110109-77110128 None:intergenic 55.0%
! TTTTCCGGTCAGTGGGAACG+GGG + chr3_4:77110160-77110179 None:intergenic 55.0%
! GGGGTGAATTTTCCGGTCAG+TGG + chr3_4:77110168-77110187 None:intergenic 55.0%
TCGATGGGTGGTCTGAGAGG+AGG - chr3_4:77106651-77106670 Msa0523680:three_prime_UTR 60.0%
! CTCGCTTCTTGGGTTGTCGC+CGG - chr3_4:77106681-77106700 Msa0523680:intron 60.0%
TTGCGTGACCGTGACGTCTC+TGG - chr3_4:77108276-77108295 Msa0523680:intron 60.0%
!! ATGGGAGTGGGCTGTAGGAG+TGG - chr3_4:77108302-77108321 Msa0523680:intron 60.0%
!! CGGCACAGACCGACTTGAGT+TGG + chr3_4:77108548-77108567 None:intergenic 60.0%
ACCACGAAACTCCCTTCCGG+CGG - chr3_4:77108632-77108651 Msa0523680:intron 60.0%
CCAGCGGGTCAGTGATGACA+TGG + chr3_4:77109711-77109730 None:intergenic 60.0%
CCATGTCATCACTGACCCGC+TGG - chr3_4:77109708-77109727 Msa0523680:intron 60.0%
CGGCAGAACCCGAAGTTTGC+GGG + chr3_4:77109866-77109885 None:intergenic 60.0%
CCGGCAGAACCCGAAGTTTG+CGG + chr3_4:77109867-77109886 None:intergenic 60.0%
! CCGCAAACTTCGGGTTCTGC+CGG - chr3_4:77109864-77109883 Msa0523680:intron 60.0%
TTGTGCGTGAGGTGGCTCCT+AGG - chr3_4:77109944-77109963 Msa0523680:intron 60.0%
CCCGTGTCCGTGAAGATGAC+TGG - chr3_4:77110043-77110062 Msa0523680:intron 60.0%
TCTTCCCCGTTCCCACTGAC+CGG - chr3_4:77110153-77110172 Msa0523680:intron 60.0%
CGGCGACAACCCAAGAAGCG+AGG + chr3_4:77106683-77106702 None:intergenic 65.0%
ACCGCCGGAAGGGAGTTTCG+TGG + chr3_4:77108636-77108655 None:intergenic 65.0%
GTCATCACTGACCCGCTGGC+CGG - chr3_4:77109712-77109731 Msa0523680:intron 65.0%
TGCGTGAGGTGGCTCCTAGG+TGG - chr3_4:77109947-77109966 Msa0523680:intron 65.0%
ACTGACCCGCTGGCCGGAGA+TGG - chr3_4:77109718-77109737 Msa0523680:intron 70.0%
CTGAGCCATCTCCGGCCAGC+GGG + chr3_4:77109726-77109745 None:intergenic 70.0%
GCTGAGCCATCTCCGGCCAG+CGG + chr3_4:77109727-77109746 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 77106414 77111180 77106414 ID=Msa0523680;Name=Msa0523680
chr3_4 mRNA 77106414 77111180 77106414 ID=Msa0523680-mRNA-1;Parent=Msa0523680;Name=Msa0523680-mRNA-1;_AED=0.00;_eAED=0.00;_QI=183|1|1|1|0.5|0.33|3|280|101
chr3_4 exon 77106414 77106690 77106414 ID=Msa0523680-mRNA-1:exon:22546;Parent=Msa0523680-mRNA-1
chr3_4 exon 77110601 77110666 77110601 ID=Msa0523680-mRNA-1:exon:22545;Parent=Msa0523680-mRNA-1
chr3_4 exon 77110755 77111180 77110755 ID=Msa0523680-mRNA-1:exon:22544;Parent=Msa0523680-mRNA-1
chr3_4 five_prime_UTR 77110998 77111180 77110998 ID=Msa0523680-mRNA-1:five_prime_utr;Parent=Msa0523680-mRNA-1
chr3_4 CDS 77110755 77110997 77110755 ID=Msa0523680-mRNA-1:cds;Parent=Msa0523680-mRNA-1
chr3_4 CDS 77110604 77110666 77110604 ID=Msa0523680-mRNA-1:cds;Parent=Msa0523680-mRNA-1
chr3_4 three_prime_UTR 77110601 77110603 77110601 ID=Msa0523680-mRNA-1:three_prime_utr;Parent=Msa0523680-mRNA-1
chr3_4 three_prime_UTR 77106414 77106690 77106414 ID=Msa0523680-mRNA-1:three_prime_utr;Parent=Msa0523680-mRNA-1
Gene Sequence

>Msa0523680

ATGGCGAGTAACTGGAGAAGAACACTCGGCAACGCAAGGTCGTTCGTGAACAATTCGATGGGTGGTCTGAGAGGAGGAAGCAACCTCGCTTCTTGGGTTGTCGCCGGAACCCTAGCTTATTATCTTTGGATCAAACCTGATCAAGATCTCAAACGCGAACAACAAGCTAAAGCTGCTATTGCTGCTTCCTCTGATGATCCTTTTCGCTATGTTGAAACTCGAAAACCTGTTCCTGATCCTCAAGTTACTGGTTTGATATATGGAAACAACAACAACAAAGACAAATCATTTAGGGCAGATGATTAG
Protein sequence

>Msa0523680

MASNWRRTLGNARSFVNNSMGGLRGGSNLASWVVAGTLAYYLWIKPDQDLKREQQAKAAIAASSDDPFRYVETRKPVPDPQVTGLIYGNNNNKDKSFRADD*